Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AGXT2	0	genome.wustl.edu	37	5	35013131	35013131	+	Silent	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	5	35013131	35013131	C	T	SNP	AGXT2	ENST00000231420	human	ensembl	69_37n	-1	known	silent	c.1116	p.A372	0.272	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2	HGNC	ENSG00000113492	22	0	0.00	12	13	52.00	-	-	-
ATP8B2	0	genome.wustl.edu	37	1	154303935	154303935	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	154303935	154303935	G	A	SNP	ATP8B2	ENST00000368489	human	ensembl	69_37n	+1	known	missense	c.418	p.D140N	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B2	HGNC	ENSG00000143515	27	0	0.00	28	39	58.21	-	-	-
CYP4Z1	0	genome.wustl.edu	37	1	47533338	47533338	+	Missense_Mutation	SNP	A	A	C			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	47533338	47533338	A	C	SNP	CYP4Z1	ENST00000334194	human	ensembl	69_37n	+1	known	missense	c.176	p.E59A	0.060	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4Z1	HGNC	ENSG00000186160	28	0	0.00	27	19	41.30	-	-	-
FCGR2B	0	genome.wustl.edu	37	1	161641360	161641360	+	Silent	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	161641360	161641360	C	T	SNP	FCGR2B	ENST00000358671	human	ensembl	69_37n	+1	known	silent	c.312	p.N104	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCGR2B	HGNC	ENSG00000072694	30	0	0.00	37	13	26.00	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115862	8115863	+	Frame_Shift_Ins	INS	-	-	C			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	10	8115862	8115863	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1211_1212	p.S405fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	59	0	0.00	22	5	18.52	-	-	-
GRIK2	0	genome.wustl.edu	37	6	102337557	102337557	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	6	102337557	102337557	C	T	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	+1	known	nonsense	c.1567	p.R523*	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	36	0	0.00	51	18	26.09	-	-	-
IFT80	0	genome.wustl.edu	37	3	160095282	160095282	+	Silent	SNP	T	T	A			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	3	160095282	160095282	T	A	SNP	IFT80	ENST00000326448	human	ensembl	69_37n	-1	known	silent	c.306	p.V102	0.850	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT80	HGNC	ENSG00000068885	94	0	0.00	114	60	34.48	-	-	-
KCTD3	0	genome.wustl.edu	37	1	215759936	215759936	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	215759936	215759936	C	T	SNP	KCTD3	ENST00000259154	human	ensembl	69_37n	+1	known	missense	c.725	p.P242L	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	64	0	0.00	52	43	45.26	-	-	-
KIAA0182	0	genome.wustl.edu	37	16	85701963	85701963	+	Frame_Shift_Del	DEL	G	G	-			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	16	85701963	85701963	G	-	DEL	KIAA0182	ENST00000253458	human	ensembl	69_37n	+1	known	frame_shift_del	c.3348	p.E1117fs	0.370	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	23	0	0.00	14	10	40.00	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	11998898	11998898	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	17	11998898	11998898	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	missense	c.433	p.R145W	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	118	0	0.00	97	64	39.75	-	-	-
MLL3	0	genome.wustl.edu	37	7	151945601	151945601	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	7	151945601	151945601	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.1918	p.E640*	0.108	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	31	0	0.00	49	32	39.51	-	-	-
MUC16	0	genome.wustl.edu	37	19	9005718	9005718	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	19	9005718	9005718	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.39688	p.G13230R	0.016	pfam_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	21	0	0.00	24	14	35.90	-	-	-
RNF217	0	genome.wustl.edu	37	6	125397899	125397899	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	6	125397899	125397899	C	T	SNP	RNF217	ENST00000560949	human	ensembl	69_37n	+1	known	nonsense	c.673	p.R225*	1.000	smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373	37	0	0.00	43	36	45.57	-	-	-
SACS	0	genome.wustl.edu	37	13	23909753	23909753	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	13	23909753	23909753	C	A	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.8262	p.K2754N	0.021	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	45	0	0.00	69	28	28.87	-	-	-
SLC22A25	0	genome.wustl.edu	37	11	62931501	62931501	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	11	62931501	62931501	C	T	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	missense	c.1439	p.G480E	0.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	40	0	0.00	46	22	32.35	-	-	-
SSR4	0	genome.wustl.edu	37	X	153063795	153063795	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	X	153063795	153063795	C	T	SNP	SSR4	ENST00000447375	human	ensembl	69_37n	+1	known	missense	c.269	p.T90M	0.177	pfam_TRAP-delta	pfam_TRAP-delta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SSR4	HGNC	ENSG00000180879	25	0	0.00	17	20	54.05	-	-	-
VIL1	0	genome.wustl.edu	37	2	219301940	219301940	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	2	219301940	219301940	C	A	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	+1	known	missense	c.2065	p.R689S	1.000	pfam_Gelsolin_dom,smart_Gelsolin,prints_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	18	0	0.00	16	7	30.43	-	-	-
WDR3	0	genome.wustl.edu	37	1	118491067	118491067	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	118491067	118491067	C	A	SNP	WDR3	ENST00000349139	human	ensembl	69_37n	+1	known	missense	c.1462	p.L488M	0.996	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183	37	0	0.00	34	30	46.88	-	-	-
ZNF229	0	genome.wustl.edu	37	19	44933794	44933794	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	19	44933794	44933794	G	A	SNP	ZNF229	ENST00000588931	human	ensembl	69_37n	-1	known	nonsense	c.1162	p.R388*	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	37	0	0.00	23	31	57.41	-	-	-
