Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB11	0	genome.wustl.edu	37	2	169869945	169869945	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	2	169869945	169869945	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	nonsense	c.226	p.Q76*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	650	0	0.00	329	201	37.92	-	-	-
ABCB11	0	genome.wustl.edu	37	2	169869945	169869945	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	2	169869945	169869945	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	nonsense	c.226	p.Q76*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	459	0	0.00	329	201	37.92	-	-	-
ABCC5	0	genome.wustl.edu	37	3	183665211	183665211	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	183665211	183665211	G	C	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.3315	p.I1105M	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	34	0	0.00	21	6	18.75	-	-	-
ABCC5	0	genome.wustl.edu	37	3	183665211	183665211	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	3	183665211	183665211	G	C	SNP	ABCC5	ENST00000334444	human	ensembl	69_37n	-1	known	missense	c.3315	p.I1105M	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC	ENSG00000114770	30	0	0.00	21	6	18.75	-	-	-
ADCYAP1R1	0	genome.wustl.edu	37	7	31104525	31104525	+	Silent	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	7	31104525	31104525	C	T	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	+1	known	silent	c.130	p.L44	0.843	pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	25	0	0.00	11	11	50.00	-	-	-
ADCYAP1R1	0	genome.wustl.edu	37	7	31104525	31104525	+	Silent	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	7	31104525	31104525	C	T	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	+1	known	silent	c.130	p.L44	0.843	pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	21	0	0.00	11	11	50.00	-	-	-
ARL10	0	genome.wustl.edu	37	5	175798850	175798850	+	Silent	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	5	175798850	175798850	G	A	SNP	ARL10	ENST00000310389	human	ensembl	69_37n	+1	known	silent	c.687	p.E229	0.001	smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL10	HGNC	ENSG00000175414	32	0	0.00	15	7	31.82	-	-	-
ARL10	0	genome.wustl.edu	37	5	175798850	175798850	+	Silent	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	5	175798850	175798850	G	A	SNP	ARL10	ENST00000310389	human	ensembl	69_37n	+1	known	silent	c.687	p.E229	0.001	smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL10	HGNC	ENSG00000175414	24	0	0.00	15	7	31.82	-	-	-
ARRDC4	0	genome.wustl.edu	37	15	98512383	98512383	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	15	98512383	98512383	A	-	DEL	ARRDC4	ENST00000268042	human	ensembl	69_37n	+1	known	frame_shift_del	c.656	p.N220fs	1.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC4	HGNC	ENSG00000140450	123	0	0.00	55	28	33.33	-	-	-
ARRDC4	0	genome.wustl.edu	37	15	98512383	98512383	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	15	98512383	98512383	A	-	DEL	ARRDC4	ENST00000268042	human	ensembl	69_37n	+1	known	frame_shift_del	c.656	p.N220fs	1.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC4	HGNC	ENSG00000140450	101	0	0.00	55	28	33.33	-	-	-
CALM1	0	genome.wustl.edu	37	14	90870228	90870228	+	Silent	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	14	90870228	90870228	C	T	SNP	CALM1	ENST00000356978	human	ensembl	69_37n	+1	known	silent	c.201	p.P67	0.184	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	CALM1	HGNC	ENSG00000198668	135	0	0.00	52	27	34.18	-	-	-
CALM1	0	genome.wustl.edu	37	14	90870228	90870228	+	Silent	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	14	90870228	90870228	C	T	SNP	CALM1	ENST00000356978	human	ensembl	69_37n	+1	known	silent	c.201	p.P67	0.184	pfam_EF-hand,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	CALM1	HGNC	ENSG00000198668	117	1	0.85	52	27	34.18	-	-	-
CD300A	0	genome.wustl.edu	37	17	72469816	72469816	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	17	72469816	72469816	T	C	SNP	CD300A	ENST00000360141	human	ensembl	69_37n	+1	known	missense	c.182	p.I61T	0.018	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300A	HGNC	ENSG00000167851	165	0	0.00	103	58	36.02	-	-	-
CD300A	0	genome.wustl.edu	37	17	72469816	72469816	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	17	72469816	72469816	T	C	SNP	CD300A	ENST00000360141	human	ensembl	69_37n	+1	known	missense	c.182	p.I61T	0.018	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300A	HGNC	ENSG00000167851	151	0	0.00	103	58	36.02	-	-	-
COX10	0	genome.wustl.edu	37	17	14110164	14110165	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	17	14110164	14110165	-	T	INS	COX10	ENST00000261643	human	ensembl	69_37n	+1	known	frame_shift_ins	c.966_967	p.P323fs	1.000:1.000	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	158	0	0.00	81	19	19.00	-	-	-
COX10	0	genome.wustl.edu	37	17	14110164	14110165	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	17	14110164	14110165	-	T	INS	COX10	ENST00000261643	human	ensembl	69_37n	+1	known	frame_shift_ins	c.966_967	p.P323fs	1.000:1.000	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695	146	0	0.00	81	19	19.00	-	-	-
CSMD1	0	genome.wustl.edu	37	8	2975975	2975975	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	8	2975975	2975975	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.6379	p.T2127A	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	122	0	0.00	35	31	46.97	-	-	-
CSMD1	0	genome.wustl.edu	37	8	2975975	2975975	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	8	2975975	2975975	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.6379	p.T2127A	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	88	0	0.00	35	31	46.97	-	-	-
EFCAB13	0	genome.wustl.edu	37	17	45405748	45405748	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	17	45405748	45405748	A	T	SNP	EFCAB13	ENST00000331493	human	ensembl	69_37n	+1	known	missense	c.29	p.Q10L	0.963	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852	304	0	0.00	142	88	38.10	-	-	-
EFCAB13	0	genome.wustl.edu	37	17	45405748	45405748	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	17	45405748	45405748	A	T	SNP	EFCAB13	ENST00000331493	human	ensembl	69_37n	+1	known	missense	c.29	p.Q10L	0.963	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852	381	0	0.00	142	88	38.10	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49175784	49175784	+	Silent	SNP	T	T	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	11	49175784	49175784	T	C	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.1884	p.S628	1.000	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	258	0	0.00	72	105	59.32	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49175784	49175784	+	Silent	SNP	T	T	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	11	49175784	49175784	T	C	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	silent	c.1884	p.S628	1.000	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	225	0	0.00	72	105	59.32	-	-	-
FRMD4A	0	genome.wustl.edu	37	10	13696451	13696452	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	10	13696451	13696452	-	G	INS	FRMD4A	ENST00000357447	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3015_3014	p.S1006fs	0.992:1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474	52	0	0.00	23	3	11.54	-	-	-
GSK3A	0	genome.wustl.edu	37	19	42738787	42738787	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	19	42738787	42738787	G	A	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	missense	c.710	p.S237F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	48	0	0.00	26	19	42.22	-	-	-
GSK3A	0	genome.wustl.edu	37	19	42738787	42738787	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	19	42738787	42738787	G	A	SNP	GSK3A	ENST00000222330	human	ensembl	69_37n	-1	known	missense	c.710	p.S237F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723	44	0	0.00	26	19	42.22	-	-	-
HEPH	0	genome.wustl.edu	37	X	65418840	65418840	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	X	65418840	65418840	G	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	+1	known	missense	c.1996	p.E666K	0.070	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	314	0	0.00	240	38	13.67	-	-	-
HEPH	0	genome.wustl.edu	37	X	65418840	65418840	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	X	65418840	65418840	G	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	+1	known	missense	c.1996	p.E666K	0.070	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	243	0	0.00	240	38	13.67	-	-	-
HIST1H2BC	0	genome.wustl.edu	37	6	26123793	26123793	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	6	26123793	26123793	C	T	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	missense	c.340	p.E114K	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	265	0	0.00	139	26	15.76	-	-	-
HIST1H2BC	0	genome.wustl.edu	37	6	26123793	26123793	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	6	26123793	26123793	C	T	SNP	HIST1H2BC	ENST00000314332	human	ensembl	69_37n	-1	known	missense	c.340	p.E114K	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596	204	0	0.00	139	26	15.76	-	-	-
IGDCC4	0	genome.wustl.edu	37	15	65681239	65681240	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	15	65681239	65681240	-	G	INS	IGDCC4	ENST00000352385	human	ensembl	69_37n	-1	novel	frame_shift_ins	c.2614_2613	p.T871fs	0.007:0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC4	HGNC	ENSG00000103742	25	0	0.00	16	2	11.11	-	-	-
INTS7	0	genome.wustl.edu	37	1	212148582	212148582	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	1	212148582	212148582	C	T	SNP	INTS7	ENST00000366994	human	ensembl	69_37n	-1	known	missense	c.1741	p.E581K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	INTS7	HGNC	ENSG00000143493	173	0	0.00	223	61	21.40	-	-	-
KIAA1211	0	genome.wustl.edu	37	4	57180592	57180592	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	4	57180592	57180592	T	-	DEL	KIAA1211	ENST00000504228	human	ensembl	69_37n	+1	known	frame_shift_del	c.924	p.E309fs	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	11	0	0.00	4	3	42.86	-	-	-
NKIRAS1	0	genome.wustl.edu	37	3	23934723	23934723	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	23934723	23934723	C	G	SNP	NKIRAS1	ENST00000388759	human	ensembl	69_37n	-1	known	missense	c.442	p.E148Q	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS1	HGNC	ENSG00000197885	421	0	0.00	249	124	33.24	-	-	-
NKIRAS1	0	genome.wustl.edu	37	3	23934723	23934723	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	3	23934723	23934723	C	G	SNP	NKIRAS1	ENST00000388759	human	ensembl	69_37n	-1	known	missense	c.442	p.E148Q	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS1	HGNC	ENSG00000197885	280	0	0.00	249	124	33.24	-	-	-
NLRP1	0	genome.wustl.edu	37	17	5462379	5462379	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	17	5462379	5462379	G	A	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.1637	p.T546I	0.814	pfscan_NACHT_NTPase	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	188	0	0.00	124	54	30.34	-	-	-
NLRP1	0	genome.wustl.edu	37	17	5462379	5462379	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	17	5462379	5462379	G	A	SNP	NLRP1	ENST00000572272	human	ensembl	69_37n	-1	known	missense	c.1637	p.T546I	0.814	pfscan_NACHT_NTPase	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	143	0	0.00	124	54	30.34	-	-	-
OR4M1	0	genome.wustl.edu	37	14	20248544	20248544	+	Silent	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	14	20248544	20248544	G	A	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	+1	known	silent	c.63	p.R21	0.575	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	705	0	0.00	740	165	18.23	-	-	-
OR4M1	0	genome.wustl.edu	37	14	20248544	20248544	+	Silent	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	14	20248544	20248544	G	A	SNP	OR4M1	ENST00000315957	human	ensembl	69_37n	+1	known	silent	c.63	p.R21	0.575	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR4M1	HGNC	ENSG00000176299	667	0	0.00	740	165	18.23	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	101	0	0.00	62	41	39.81	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	104	0	0.00	62	41	39.81	-	-	-
PORCN	0	genome.wustl.edu	37	X	48370989	48370990	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	X	48370989	48370990	-	T	INS	PORCN	ENST00000326194	human	ensembl	69_37n	+1	known	frame_shift_ins	c.568_569	p.Q191fs	1.000:1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	13	0	0.00	5	5	50.00	-	-	-
PORCN	0	genome.wustl.edu	37	X	48370989	48370990	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	X	48370989	48370990	-	T	INS	PORCN	ENST00000326194	human	ensembl	69_37n	+1	known	frame_shift_ins	c.568_569	p.Q191fs	1.000:1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	16	0	0.00	5	5	50.00	-	-	-
PPHLN1	0	genome.wustl.edu	37	12	42835228	42835228	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	12	42835228	42835228	A	C	SNP	PPHLN1	ENST00000395568	human	ensembl	69_37n	+1	known	missense	c.1021	p.I341L	1.000	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	141	0	0.00	115	57	32.95	-	-	-
PPHLN1	0	genome.wustl.edu	37	12	42835228	42835228	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	12	42835228	42835228	A	C	SNP	PPHLN1	ENST00000395568	human	ensembl	69_37n	+1	known	missense	c.1021	p.I341L	1.000	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	160	0	0.00	115	57	32.95	-	-	-
PSMD13	0	genome.wustl.edu	37	11	244466	244466	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	11	244466	244466	G	A	SNP	PSMD13	ENST00000526783	human	ensembl	69_37n	+1	novel	missense	c.38	p.R13K	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMD13	HGNC	ENSG00000185627	162	0	0.00	83	16	16.16	-	-	-
PSMD13	0	genome.wustl.edu	37	11	244466	244466	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	11	244466	244466	G	A	SNP	PSMD13	ENST00000526783	human	ensembl	69_37n	+1	novel	missense	c.38	p.R13K	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMD13	HGNC	ENSG00000185627	62	0	0.00	83	16	16.16	-	-	-
RP1L1	0	genome.wustl.edu	37	8	10465798	10465798	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	8	10465798	10465798	C	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.5810	p.G1937V	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	312	1	0.32	156	162	50.47	-	-	-
RP1L1	0	genome.wustl.edu	37	8	10465798	10465798	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	8	10465798	10465798	C	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.5810	p.G1937V	0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	634	0	0.00	156	162	50.47	-	-	-
SEC13	0	genome.wustl.edu	37	3	10354287	10354287	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	3	10354287	10354287	C	T	SNP	SEC13	ENST00000350697	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC13	HGNC	ENSG00000157020	85	0	0.00	40	20	33.33	-	-	-
SEC13	0	genome.wustl.edu	37	3	10354287	10354287	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	3	10354287	10354287	C	T	SNP	SEC13	ENST00000350697	human	ensembl	69_37n	-1	known	missense	c.292	p.E98K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC13	HGNC	ENSG00000157020	47	0	0.00	40	20	33.33	-	-	-
SH2D4B	0	genome.wustl.edu	37	10	82369254	82369254	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	10	82369254	82369254	C	T	SNP	SH2D4B	ENST00000470604	human	ensembl	69_37n	+1	known	missense	c.929	p.P310L	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217	176	0	0.00	66	38	36.54	-	-	-
SH2D4B	0	genome.wustl.edu	37	10	82369254	82369254	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	10	82369254	82369254	C	T	SNP	SH2D4B	ENST00000470604	human	ensembl	69_37n	+1	known	missense	c.929	p.P310L	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217	165	0	0.00	66	38	36.54	-	-	-
SNX25	0	genome.wustl.edu	37	4	186188284	186188284	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	4	186188284	186188284	G	A	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	+1	known	missense	c.574	p.D192N	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	264	0	0.00	126	32	20.25	-	-	-
SNX25	0	genome.wustl.edu	37	4	186188284	186188284	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	4	186188284	186188284	G	A	SNP	SNX25	ENST00000264694	human	ensembl	69_37n	+1	known	missense	c.574	p.D192N	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Regulat_G_prot_signal,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX25	HGNC	ENSG00000109762	214	0	0.00	126	32	20.25	-	-	-
SSPO	0	genome.wustl.edu	37	7	149481940	149481940	+	RNA	SNP	G	G	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	7	149481940	149481940	G	T	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	32	0	0.00	11	4	26.67	-	-	-
SSPO	0	genome.wustl.edu	37	7	149481940	149481940	+	RNA	SNP	G	G	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	7	149481940	149481940	G	T	SNP	SSPO	ENST00000262089	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	44	0	0.00	11	4	26.67	-	-	-
THEMIS2	0	genome.wustl.edu	37	1	28211957	28211957	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	1	28211957	28211957	A	T	SNP	THEMIS2	ENST00000373921	human	ensembl	69_37n	+1	known	missense	c.1871	p.D624V	0.000	NULL	NULL	-	no_errors	THEMIS2	HGNC	ENSG00000130775	35	0	0.00	22	9	29.03	-	-	-
THEMIS2	0	genome.wustl.edu	37	1	28211957	28211957	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	1	28211957	28211957	A	T	SNP	THEMIS2	ENST00000373921	human	ensembl	69_37n	+1	known	missense	c.1871	p.D624V	0.000	NULL	NULL	-	no_errors	THEMIS2	HGNC	ENSG00000130775	52	0	0.00	22	9	29.03	-	-	-
TMEM132D	0	genome.wustl.edu	37	12	130184704	130184705	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	12	130184704	130184705	-	G	INS	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	frame_shift_ins	c.619_618	p.T206fs	0.073:0.027	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	22	0	0.00	15	4	21.05	-	-	-
UBL3	0	genome.wustl.edu	37	13	30351391	30351391	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	13	30351391	30351391	G	A	SNP	UBL3	ENST00000380680	human	ensembl	69_37n	-1	known	missense	c.37	p.R13C	1.000	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	-	no_errors	UBL3	HGNC	ENSG00000122042	119	0	0.00	39	15	27.78	-	-	-
UBL3	0	genome.wustl.edu	37	13	30351391	30351391	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	13	30351391	30351391	G	A	SNP	UBL3	ENST00000380680	human	ensembl	69_37n	-1	known	missense	c.37	p.R13C	1.000	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	-	no_errors	UBL3	HGNC	ENSG00000122042	93	0	0.00	39	15	27.78	-	-	-
USP36	0	genome.wustl.edu	37	17	76799860	76799861	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	17	76799860	76799861	-	G	INS	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2417_2416	p.Q806fs	0.000:0.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	30	0	0.00	5	2	28.57	-	-	-
ZFHX4	0	genome.wustl.edu	37	8	77766283	77766283	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	b843963e-eb76-4c5b-9b0d-e9c85ce8da9c	8	77766283	77766283	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	+1	known	missense	c.7126	p.A2376T	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	390	0	0.00	204	98	32.45	-	-	-
ZFHX4	0	genome.wustl.edu	37	8	77766283	77766283	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BV-01A-11W-A019-09	TCGA-BH-A0BV-11A-31W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ac613ae-249a-4f24-9ecd-8a9b583b2966	0af2a93f-7254-4396-af65-c45fcbdc9f49	8	77766283	77766283	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	+1	known	missense	c.7126	p.A2376T	0.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	288	0	0.00	204	98	32.45	-	-	-
