Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BTBD17	0	genome.wustl.edu	37	17	72352897	72352897	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	17	72352897	72352897	C	A	SNP	BTBD17	ENST00000375366	human	ensembl	69_37n	-1	known	missense	c.1336	p.D446Y	1.000	NULL	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347	99	1	0.99	105	29	21.48	-	-	-
BTBD17	0	genome.wustl.edu	37	17	72353000	72353000	+	Silent	SNP	C	C	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	17	72353000	72353000	C	T	SNP	BTBD17	ENST00000375366	human	ensembl	69_37n	-1	known	silent	c.1233	p.K411	1.000	NULL	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347	19	0	0.00	21	7	25.00	-	-	-
CACNA1C	0	genome.wustl.edu	37	12	2602428	2602428	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	12	2602428	2602428	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	+1	known	missense	c.989	p.T330M	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	84	0	0.00	94	24	20.17	-	-	-
DISP2	0	genome.wustl.edu	37	15	40660863	40660863	+	Silent	SNP	C	C	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	15	40660863	40660863	C	T	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	+1	known	silent	c.2550	p.C850	0.198	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	11	0	0.00	9	4	30.77	-	-	-
EBF1	0	genome.wustl.edu	37	5	158523388	158523388	+	Silent	SNP	G	G	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	5	158523388	158523388	G	A	SNP	EBF1	ENST00000313708	human	ensembl	69_37n	-1	known	silent	c.318	p.N106	0.968	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,superfamily_HLH_DNA-bd,smart_IPT_TIG_rcpt	-	no_errors	EBF1	HGNC	ENSG00000164330	209	2	0.94	132	47	26.11	-	-	-
FAM131C	0	genome.wustl.edu	37	1	16386065	16386065	+	Silent	SNP	T	T	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	1	16386065	16386065	T	A	SNP	FAM131C	ENST00000375662	human	ensembl	69_37n	-1	known	silent	c.486	p.T162	0.178	NULL	superfamily_Chromodomain-like	-	no_errors	FAM131C	HGNC	ENSG00000185519	26	0	0.00	15	3	16.67	-	-	-
FAM185A	0	genome.wustl.edu	37	7	102390050	102390050	+	Silent	SNP	G	G	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	7	102390050	102390050	G	T	SNP	FAM185A	ENST00000413034	human	ensembl	69_37n	+1	known	silent	c.396	p.V132	0.139	NULL	NULL	-	no_errors	FAM185A	HGNC	ENSG00000222011	15	0	0.00	25	8	24.24	-	-	-
FCGRT	0	genome.wustl.edu	37	19	50017150	50017150	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	19	50017150	50017150	T	A	SNP	FCGRT	ENST00000221466	human	ensembl	69_37n	+1	known	missense	c.85	p.S29T	0.151	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	FCGRT	HGNC	ENSG00000104870	205	2	0.95	212	51	19.10	-	-	-
FREM3	0	genome.wustl.edu	37	4	144545442	144545442	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	4	144545442	144545442	C	T	SNP	FREM3	ENST00000329798	human	ensembl	69_37n	-1	putative	nonsense	c.5472	p.W1824*	0.998	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM3	HGNC	ENSG00000183090	310	2	0.64	177	69	27.94	-	-	-
HSPG2	0	genome.wustl.edu	37	1	22167762	22167762	+	Silent	SNP	G	G	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	1	22167762	22167762	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	silent	c.9345	p.S3115	0.622	smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	36	0	0.00	30	6	16.67	-	-	-
IDH1	0	genome.wustl.edu	37	2	209106864	209106864	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	2	209106864	209106864	T	C	SNP	IDH1	ENST00000345146	human	ensembl	69_37n	-1	known	missense	c.704	p.Y235C	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP_euk-typ,tigrfam_Isocitrate_DH_NADP_euk-typ	-	no_errors	IDH1	HGNC	ENSG00000138413	120	1	0.83	100	27	21.26	-	-	-
IFITM3	0	genome.wustl.edu	37	11	319874	319874	+	Silent	SNP	G	G	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	11	319874	319874	G	A	SNP	IFITM3	ENST00000399808	human	ensembl	69_37n	-1	known	silent	c.366	p.I122	0.000	pfam_Interferon-induced_TM_protein	pfam_Interferon-induced_TM_protein	-	no_errors	IFITM3	HGNC	ENSG00000142089	121	1	0.82	191	42	18.03	-	-	-
LAMC3	0	genome.wustl.edu	37	9	133945108	133945108	+	Silent	SNP	C	C	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	9	133945108	133945108	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	69_37n	+1	known	silent	c.2940	p.N980	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	16	0	0.00	22	8	26.67	-	-	-
MUC12	0	genome.wustl.edu	37	7	100639210	100639211	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	7	100639210	100639211	-	A	INS	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5795_5796	p.A1933fs	0.000:0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	21	0	0.00	13	3	18.75	-	-	-
MYL9	0	genome.wustl.edu	37	20	35177631	35177631	+	Silent	SNP	C	C	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	20	35177631	35177631	C	T	SNP	MYL9	ENST00000279022	human	ensembl	69_37n	+1	known	silent	c.498	p.G166	0.611	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYL9	HGNC	ENSG00000101335	74	0	0.00	99	23	18.85	-	-	-
NOSTRIN	0	genome.wustl.edu	37	2	169711935	169711936	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	2	169711935	169711936	AG	-	DEL	NOSTRIN	ENST00000444448	human	ensembl	69_37n	+1	known	frame_shift_del	c.1100_1101	p.D369fs	0.993:0.663	superfamily_HR1_rho-bd	pfam_SH3_domain,pfam_SH3_2,pfam_FCH,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072	137	1	0.72	79	43	34.96	-	-	-
PCDHGA9	0	genome.wustl.edu	37	5	140782907	140782907	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	5	140782907	140782907	G	A	SNP	PCDHGA9	ENST00000573521	human	ensembl	69_37n	+1	known	missense	c.388	p.A130T	0.342	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	54	0	0.00	27	11	28.95	-	-	-
PKN1	0	genome.wustl.edu	37	19	14581448	14581448	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	19	14581448	14581448	G	A	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	+1	known	missense	c.2516	p.R839H	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	29	0	0.00	48	13	20.97	-	-	-
PTPRR	0	genome.wustl.edu	37	12	71286478	71286478	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	12	71286478	71286478	G	A	SNP	PTPRR	ENST00000283228	human	ensembl	69_37n	-1	known	missense	c.338	p.A113V	0.987	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233	375	3	0.79	370	134	26.33	-	-	-
RPS6	0	genome.wustl.edu	37	9	19380191	19380191	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	9	19380191	19380191	C	T	SNP	RPS6	ENST00000380394	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154	133	1	0.75	150	67	30.88	-	-	-
SIN3B	0	genome.wustl.edu	37	19	16965008	16965008	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	19	16965008	16965008	G	A	SNP	SIN3B	ENST00000379803	human	ensembl	69_37n	+1	known	missense	c.994	p.A332T	0.987	pfam_PAH,superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511	77	0	0.00	92	17	15.60	-	-	-
ZNF366	0	genome.wustl.edu	37	5	71739899	71739899	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1a59cd97-2ee8-4f82-b542-e2f35171bc01	a2afc239-b11b-4105-a2da-b183e9e78247	5	71739899	71739899	T	A	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.1919	p.Q640L	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	59	0	0.00	60	28	31.46	-	-	-
