Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADPGK	0	genome.wustl.edu	37	15	73048722	73048722	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	15	73048722	73048722	T	C	SNP	ADPGK	ENST00000311669	human	ensembl	69_37n	-1	known	missense	c.710	p.N237S	1.000	pfam_ADP_PFK/GK	pfam_ADP_PFK/GK	-	no_errors	ADPGK	HGNC	ENSG00000159322	347	0	0.00	170	95	35.85	-	-	-
CDAN1	0	genome.wustl.edu	37	15	43023885	43023886	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	15	43023885	43023886	-	C	INS	CDAN1	ENST00000356231	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1672_1671	p.P557fs	1.000:0.026	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326	36	0	0.00	18	2	10.00	-	-	-
CDH3	0	genome.wustl.edu	37	16	68714903	68714903	+	Silent	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	16	68714903	68714903	C	T	SNP	CDH3	ENST00000264012	human	ensembl	69_37n	+1	known	silent	c.900	p.A300	0.291	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038	55	0	0.00	65	14	17.72	-	-	-
CTSB	0	genome.wustl.edu	37	8	11703257	11703257	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	8	11703257	11703257	C	T	SNP	CTSB	ENST00000353047	human	ensembl	69_37n	-1	known	missense	c.835	p.A279T	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Propeptide_C1A,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSB	HGNC	ENSG00000164733	44	0	0.00	22	16	42.11	-	-	-
EPHA1	0	genome.wustl.edu	37	7	143096020	143096021	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	7	143096020	143096021	-	G	INS	EPHA1	ENST00000275815	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1010_1009	p.R337fs	0.023:0.149	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	22	0	0.00	9	2	18.18	-	-	-
FAM187B	0	genome.wustl.edu	37	19	35716083	35716084	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	19	35716083	35716084	-	G	INS	FAM187B	ENST00000324675	human	ensembl	69_37n	-1	known	frame_shift_ins	c.755_754	p.L252fs	0.372:0.160	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558	9	0	0.00	7	2	22.22	-	-	-
FN3KRP	0	genome.wustl.edu	37	17	80674690	80674691	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	17	80674690	80674691	-	G	INS	FN3KRP	ENST00000269373	human	ensembl	69_37n	+1	known	frame_shift_ins	c.59_60	p.G23fs	0.730:0.064	pfam_Fructo-/Ketosamine-3-kinase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3KRP	HGNC	ENSG00000141560	10	0	0.00	8	2	20.00	-	-	-
GGT3P	0	genome.wustl.edu	37	22	18766253	18766253	+	RNA	SNP	T	T	C			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	22	18766253	18766253	T	C	SNP	GGT3P	ENST00000412448	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GGT3P	HGNC	ENSG00000197421	10	0	0.00	3	2	40.00	-	-	-
HECW2	0	genome.wustl.edu	37	2	197081794	197081794	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	2	197081794	197081794	T	C	SNP	HECW2	ENST00000260983	human	ensembl	69_37n	-1	known	missense	c.4432	p.I1478V	1.000	pfam_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW2	HGNC	ENSG00000138411	286	0	0.00	104	70	40.23	-	-	-
HIST1H3G	0	genome.wustl.edu	37	6	26271388	26271388	+	Silent	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	6	26271388	26271388	G	A	SNP	HIST1H3G	ENST00000305910	human	ensembl	69_37n	-1	known	silent	c.225	p.I75	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018	65	0	0.00	59	26	30.59	-	-	-
IQCG	0	genome.wustl.edu	37	3	197670853	197670853	+	Silent	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	3	197670853	197670853	G	A	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	silent	c.78	p.G26	0.000	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	46	0	0.00	24	14	35.00	-	-	-
KIAA0922	0	genome.wustl.edu	37	4	154556719	154556719	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	4	154556719	154556719	C	T	SNP	KIAA0922	ENST00000409959	human	ensembl	69_37n	+1	known	missense	c.4553	p.S1518F	0.839	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	70	0	0.00	80	18	18.37	-	-	-
KIF21B	0	genome.wustl.edu	37	1	200958025	200958025	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	1	200958025	200958025	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.3167	p.R1056Q	1.000	superfamily_Prefoldin	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	37	0	0.00	35	7	16.67	-	-	-
MLL3	0	genome.wustl.edu	37	7	151859396	151859396	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	7	151859396	151859396	C	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.11266	p.A3756fs	0.001	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	105	0	0.00	60	10	13.70	-	-	-
MXRA5	0	genome.wustl.edu	37	X	3238811	3238811	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	X	3238811	3238811	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.4915	p.P1639S	0.006	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	144	0	0.00	135	68	33.50	-	-	-
MYB	0	genome.wustl.edu	37	6	135511376	135511377	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	6	135511376	135511377	-	CA	INS	MYB	ENST00000341911	human	ensembl	69_37n	+1	known	frame_shift_ins	c.418_419	p.E141fs	1.000:1.000	superfamily_Homeodomain-like,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	144	0	0.00	97	37	27.61	-	-	-
OSBPL10	0	genome.wustl.edu	37	3	31725367	31725367	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	3	31725367	31725367	C	T	SNP	OSBPL10	ENST00000429492	human	ensembl	69_37n	-1	putative	missense	c.791	p.R264K	0.991	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OSBPL10	HGNC	ENSG00000144645	161	0	0.00	132	16	10.74	-	-	-
PIWIL3	0	genome.wustl.edu	37	22	25158460	25158460	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	22	25158460	25158460	C	T	SNP	PIWIL3	ENST00000332271	human	ensembl	69_37n	-1	known	missense	c.7	p.G3S	0.736	NULL	pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571	110	0	0.00	83	15	15.31	-	-	-
RABL6	0	genome.wustl.edu	37	9	139718076	139718076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	9	139718076	139718076	A	-	DEL	RABL6	ENST00000371663	human	ensembl	69_37n	+1	known	frame_shift_del	c.230	p.E77fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642	32	0	0.00	27	30	52.63	-	-	-
RABL6	0	genome.wustl.edu	37	9	139718080	139718081	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	9	139718080	139718081	-	A	INS	RABL6	ENST00000371663	human	ensembl	69_37n	+1	known	frame_shift_ins	c.234_235	p.Q78fs	1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642	32	0	0.00	26	29	52.73	-	-	-
RABL6	0	genome.wustl.edu	37	9	139718081	139718082	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	9	139718081	139718082	-	G	INS	RABL6	ENST00000371663	human	ensembl	69_37n	+1	known	frame_shift_ins	c.235_236	p.Q79fs	1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642	32	0	0.00	24	29	54.72	-	-	-
RDH11	0	genome.wustl.edu	37	14	68157923	68157923	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	14	68157923	68157923	C	T	SNP	RDH11	ENST00000381346	human	ensembl	69_37n	-1	known	missense	c.388	p.V130M	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH11	HGNC	ENSG00000072042	81	0	0.00	144	32	18.18	-	-	-
SDK2	0	genome.wustl.edu	37	17	71394281	71394282	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	17	71394281	71394282	-	G	INS	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3247_3246	p.S1082fs	1.000:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	44	0	0.00	32	4	11.11	-	-	-
SFTA3	0	genome.wustl.edu	37	14	36946266	36946266	+	Silent	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	14	36946266	36946266	G	A	SNP	SFTA3	ENST00000518002	human	ensembl	69_37n	-1	known	silent	c.171	p.V57	0.002	NULL	NULL	-	no_errors	SFTA3	HGNC	ENSG00000229415	187	0	0.00	84	45	34.88	-	-	-
SHCBP1	0	genome.wustl.edu	37	16	46617506	46617506	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	16	46617506	46617506	T	G	SNP	SHCBP1	ENST00000303383	human	ensembl	69_37n	-1	known	missense	c.1615	p.N539H	1.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241	192	1	0.52	46	28	37.84	-	-	-
SNRNP40	0	genome.wustl.edu	37	1	31769548	31769548	+	Silent	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	1	31769548	31769548	G	A	SNP	SNRNP40	ENST00000446633	human	ensembl	69_37n	-1	known	silent	c.51	p.V17	0.849	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SNRNP40	HGNC	ENSG00000060688	39	0	0.00	25	13	34.21	-	-	-
TBX3	0	genome.wustl.edu	37	12	115118782	115118782	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	12	115118782	115118782	G	A	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.559	p.H187Y	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	91	0	0.00	80	16	16.67	-	-	-
TENC1	0	genome.wustl.edu	37	12	53454755	53454756	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	12	53454755	53454756	-	C	INS	TENC1	ENST00000314276	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3095_3096	p.D1035fs	0.719:0.438	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077	16	0	0.00	15	3	16.67	-	-	-
TMEM150A	0	genome.wustl.edu	37	2	85826426	85826426	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	2	85826426	85826426	C	T	SNP	TMEM150A	ENST00000334462	human	ensembl	69_37n	-1	known	missense	c.589	p.V197I	0.966	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150A	HGNC	ENSG00000168890	25	0	0.00	20	4	16.67	-	-	-
TRIM14	0	genome.wustl.edu	37	9	100862246	100862246	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	9	100862246	100862246	G	A	SNP	TRIM14	ENST00000475147	human	ensembl	69_37n	-1	known	nonsense	c.220	p.Q74*	0.005	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM14	HGNC	ENSG00000106785	57	0	0.00	51	18	26.09	-	-	-
VCL	0	genome.wustl.edu	37	10	75843202	75843202	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	10	75843202	75843202	G	T	SNP	VCL	ENST00000211998	human	ensembl	69_37n	+1	known	missense	c.953	p.R318L	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	183	1	0.54	130	64	32.99	-	-	-
WHAMMP2	0	genome.wustl.edu	37	15	29000046	29000046	+	RNA	DEL	A	A	-			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	15	29000046	29000046	A	-	DEL	WHAMMP2	ENST00000512149	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.836	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334	75	0	0.00	18	2	10.00	-	-	-
ZFHX3	0	genome.wustl.edu	37	16	72830109	72830109	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0HQ-01A-11W-A050-09	TCGA-BH-A0HQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f03af67f-3119-4ee4-a4b0-227d36f493ba	006ff264-ef7d-4021-a879-77080c0440cf	16	72830109	72830109	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	nonsense	c.6472	p.R2158*	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	81	0	0.00	19	37	66.07	-	-	-
