Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS7	0	genome.wustl.edu	37	15	79056047	79056047	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	15	79056047	79056047	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	nonsense	c.4734	p.W1578*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	101	0	0.00	73	10	12.05	-	-	-
AKR1C2	0	genome.wustl.edu	37	10	5041580	5041580	+	RNA	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	10	5041580	5041580	C	T	SNP	AKR1C2	ENST00000460124	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKR1C2	HGNC	ENSG00000151632	23	0	0.00	28	10	26.32	-	-	-
ANKRD30BL	0	genome.wustl.edu	37	2	133015522	133015522	+	RNA	SNP	C	C	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	2	133015522	133015522	C	A	SNP	ANKRD30BL	ENST00000470729	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	62	0	0.00	77	9	10.47	-	-	-
ASPHD2	0	genome.wustl.edu	37	22	26839131	26839131	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	22	26839131	26839131	G	A	SNP	ASPHD2	ENST00000215906	human	ensembl	69_37n	+1	known	missense	c.1069	p.E357K	1.000	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203	36	0	0.00	52	6	10.34	-	-	-
ATP13A3	0	genome.wustl.edu	37	3	194147817	194147817	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	194147817	194147817	G	T	SNP	ATP13A3	ENST00000256031	human	ensembl	69_37n	-1	known	missense	c.3112	p.H1038N	0.984	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A3	HGNC	ENSG00000133657	36	0	0.00	35	4	10.26	-	-	-
BAZ2B	0	genome.wustl.edu	37	2	160206348	160206348	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	2	160206348	160206348	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	69_37n	-1	known	missense	c.4734	p.M1578I	0.004	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	29	0	0.00	32	5	13.51	-	-	-
BTK	0	genome.wustl.edu	37	X	100617172	100617172	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	X	100617172	100617172	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.577	p.E193K	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	48	0	0.00	39	15	27.78	-	-	-
CDADC1	0	genome.wustl.edu	37	13	49841963	49841963	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	13	49841963	49841963	G	A	SNP	CDADC1	ENST00000251108	human	ensembl	69_37n	+1	known	missense	c.768	p.M256I	1.000	NULL	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	CDADC1	HGNC	ENSG00000102543	28	0	0.00	44	9	16.98	-	-	-
CIR1	0	genome.wustl.edu	37	2	175213341	175213341	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	2	175213341	175213341	C	T	SNP	CIR1	ENST00000342016	human	ensembl	69_37n	-1	known	missense	c.1237	p.E413K	0.899	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433	72	0	0.00	91	20	18.02	-	-	-
DEPDC5	0	genome.wustl.edu	37	22	32297755	32297755	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	22	32297755	32297755	G	A	SNP	DEPDC5	ENST00000266091	human	ensembl	69_37n	+1	known	missense	c.4337	p.R1446Q	1.000	NULL	pfam_DUF3608,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150	44	0	0.00	43	16	27.12	-	-	-
HHLA3	0	genome.wustl.edu	37	1	70820695	70820695	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	1	70820695	70820695	G	A	SNP	HHLA3	ENST00000432224	human	ensembl	69_37n	+1	known	missense	c.61	p.E21K	0.000	NULL	NULL	-	no_errors	HHLA3	HGNC	ENSG00000197568	45	0	0.00	70	12	14.63	-	-	-
HLA-DPB1	0	genome.wustl.edu	37	6	33053652	33053652	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	6	33053652	33053652	G	T	SNP	HLA-DPB1	ENST00000416804	human	ensembl	69_37n	+1	known	nonsense	c.643	p.G215*	0.000	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HLA-DPB1	HGNC	ENSG00000223865	36	0	0.00	35	4	10.26	-	-	-
HLA-DQB1	0	genome.wustl.edu	37	6	32629935	32629935	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	6	32629935	32629935	C	G	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	missense	c.470	p.G157A	0.001	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	18	0	0.00	16	11	40.74	-	-	-
KBTBD12	0	genome.wustl.edu	37	3	127642153	127642153	+	Silent	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	127642153	127642153	G	A	SNP	KBTBD12	ENST00000405109	human	ensembl	69_37n	+1	known	silent	c.249	p.S83	0.011	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715	20	0	0.00	34	7	17.07	-	-	-
LAMA5	0	genome.wustl.edu	37	20	60889469	60889469	+	Silent	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	20	60889469	60889469	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	silent	c.8395	p.L2799	0.991	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	50	0	0.00	43	6	12.24	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56177011	56177014	+	Frame_Shift_Del	DEL	ATAG	ATAG	-			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	ATAG	ATAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	5	56177011	56177014	ATAG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.2281_2284	p.R763fs	0.994:0.998:0.969:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	33	0	0.00	43	5	10.42	-	-	-
MUC12	0	genome.wustl.edu	37	7	100644027	100644027	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	7	100644027	100644027	C	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.10612	p.P3538T	0.016	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	10	0	0.00	2	2	50.00	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1269731	1269731	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	11	1269731	1269731	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.11630	p.T3877K	0.010	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	75	0	0.00	90	23	20.35	-	-	-
NBEAL1	0	genome.wustl.edu	37	2	203962315	203962315	+	RNA	SNP	G	G	C			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	2	203962315	203962315	G	C	SNP	NBEAL1	ENST00000483147	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	NBEAL1	HGNC	ENSG00000144426	39	0	0.00	34	7	16.67	-	-	-
NLGN4X	0	genome.wustl.edu	37	X	5947366	5947366	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	X	5947366	5947366	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	69_37n	-1	known	missense	c.640	p.G214R	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	61	0	0.00	91	18	16.51	-	-	-
OR4F15	0	genome.wustl.edu	37	15	102358817	102358817	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	15	102358817	102358817	A	G	SNP	OR4F15	ENST00000332238	human	ensembl	69_37n	+1	known	missense	c.428	p.Y143C	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854	65	0	0.00	65	11	14.29	-	-	-
PALMD	0	genome.wustl.edu	37	1	100127929	100127929	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	1	100127929	100127929	G	A	SNP	PALMD	ENST00000263174	human	ensembl	69_37n	+1	known	missense	c.100	p.D34N	1.000	NULL	pfam_Paralemmin	-	no_errors	PALMD	HGNC	ENSG00000099260	32	0	0.00	55	7	11.29	-	-	-
PARP4	0	genome.wustl.edu	37	13	25021263	25021263	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	13	25021263	25021263	T	C	SNP	PARP4	ENST00000381989	human	ensembl	69_37n	-1	known	missense	c.3176	p.Q1059R	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699	34	0	0.00	36	6	14.29	-	-	-
PCDHAC1	0	genome.wustl.edu	37	5	140307594	140307594	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	5	140307594	140307594	G	T	SNP	PCDHAC1	ENST00000253807	human	ensembl	69_37n	+1	known	missense	c.1117	p.G373C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	28	0	0.00	31	4	11.43	-	-	-
PCF11	0	genome.wustl.edu	37	11	82892090	82892090	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	11	82892090	82892090	C	T	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	+1	known	nonsense	c.4024	p.Q1342*	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	41	0	0.00	47	7	12.96	-	-	-
PCNXL2	0	genome.wustl.edu	37	1	233296053	233296053	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	1	233296053	233296053	C	G	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.3493	p.E1165Q	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	15	0	0.00	25	6	18.75	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0.00	52	11	17.46	-	-	-
PTPRJ	0	genome.wustl.edu	37	11	48146604	48146604	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	11	48146604	48146604	C	T	SNP	PTPRJ	ENST00000418331	human	ensembl	69_37n	+1	known	missense	c.959	p.S320F	0.000	smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	23	0	0.00	33	6	15.38	-	-	-
RAC2	0	genome.wustl.edu	37	22	37627984	37627984	+	Silent	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	22	37627984	37627984	G	A	SNP	RAC2	ENST00000249071	human	ensembl	69_37n	-1	known	silent	c.276	p.N92	0.996	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAC2	HGNC	ENSG00000128340	44	0	0.00	42	8	16.00	-	-	-
SCPEP1	0	genome.wustl.edu	37	17	55055526	55055526	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	17	55055526	55055526	G	T	SNP	SCPEP1	ENST00000262288	human	ensembl	69_37n	+1	known	missense	c.6	p.E2D	1.000	NULL	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064	25	0	0.00	26	4	13.33	-	-	-
SIRT6	0	genome.wustl.edu	37	19	4174718	4174718	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	19	4174718	4174718	G	A	SNP	SIRT6	ENST00000337491	human	ensembl	69_37n	-1	known	nonsense	c.964	p.Q322*	0.024	NULL	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT6	HGNC	ENSG00000077463	41	0	0.00	29	5	14.71	-	-	-
SIX4	0	genome.wustl.edu	37	14	61180304	61180304	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	14	61180304	61180304	C	G	SNP	SIX4	ENST00000216513	human	ensembl	69_37n	-1	known	missense	c.2167	p.E723Q	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	SIX4	HGNC	ENSG00000100625	34	0	0.00	24	4	14.29	-	-	-
SMARCC1	0	genome.wustl.edu	37	3	47629620	47629620	+	RNA	SNP	G	G	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	3	47629620	47629620	G	T	SNP	SMARCC1	ENST00000425518	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	SMARCC1	HGNC	ENSG00000173473	22	0	0.00	29	5	14.71	-	-	-
TRIM66	0	genome.wustl.edu	37	11	8639492	8639492	+	Silent	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	11	8639492	8639492	C	T	SNP	TRIM66	ENST00000299550	human	ensembl	69_37n	-1	known	silent	c.3650	p.*1217	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_B-box,smart_Znf_PHD,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	TRIM66	HGNC	ENSG00000166436	35	0	0.00	19	8	29.63	-	-	-
TUBB2B	0	genome.wustl.edu	37	6	3225580	3225580	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	6	3225580	3225580	G	A	SNP	TUBB2B	ENST00000259818	human	ensembl	69_37n	-1	known	missense	c.743	p.A248V	1.000	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285	15	0	0.00	28	7	20.00	-	-	-
VCX	0	genome.wustl.edu	37	X	7811962	7811962	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	X	7811962	7811962	C	T	SNP	VCX	ENST00000381059	human	ensembl	69_37n	+1	known	nonsense	c.526	p.Q176*	0.083	NULL	NULL	-	no_errors	VCX	HGNC	ENSG00000182583	68	0	0.00	140	22	13.58	-	-	-
ZNF407	0	genome.wustl.edu	37	18	72347245	72347245	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	18	72347245	72347245	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	69_37n	+1	known	missense	c.4270	p.D1424N	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	36	0	0.00	40	11	21.57	-	-	-
ZNF585B	0	genome.wustl.edu	37	19	37677381	37677381	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A42V-01A-11D-A243-09	TCGA-BH-A42V-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	672163b5-fe8c-4e28-bdd1-d6f5f18f4170	89acbcda-52f5-44e6-b820-fc64a2d6ddc5	19	37677381	37677381	G	C	SNP	ZNF585B	ENST00000532828	human	ensembl	69_37n	-1	known	missense	c.1058	p.S353C	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680	41	0	0.00	56	7	11.11	-	-	-
