Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFF2	0	genome.wustl.edu	37	X	148037578	148037578	+	Missense_Mutation	SNP	G	G	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	X	148037578	148037578	G	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	+1	known	missense	c.2003	p.R668I	0.997	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	151	1	0.65	79	59	42.75	-	-	-
APOB	0	genome.wustl.edu	37	2	21224835	21224835	+	Frame_Shift_Del	DEL	T	T	-			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	2	21224835	21224835	T	-	DEL	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	frame_shift_del	c.13459	p.I4487fs	0.420	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	173	0	0.00	123	87	41.04	-	-	-
ASCC2	0	genome.wustl.edu	37	22	30189408	30189408	+	Silent	SNP	G	G	A			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	22	30189408	30189408	G	A	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	silent	c.1860	p.Y620	0.986	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	88	0	0.00	56	9	13.85	-	-	-
CKAP2	0	genome.wustl.edu	37	13	53048072	53048072	+	Missense_Mutation	SNP	T	T	G			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	13	53048072	53048072	T	G	SNP	CKAP2	ENST00000378037	human	ensembl	69_37n	+1	known	missense	c.1658	p.L553R	0.000	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108	263	0	0.00	154	119	43.43	-	-	-
CNTN1	0	genome.wustl.edu	37	12	41316230	41316230	+	Missense_Mutation	SNP	T	T	A			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	12	41316230	41316230	T	A	SNP	CNTN1	ENST00000347616	human	ensembl	69_37n	+1	known	missense	c.400	p.Y134N	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN1	HGNC	ENSG00000018236	238	0	0.00	125	105	45.65	-	-	-
DMWD	0	genome.wustl.edu	37	19	46294321	46294321	+	Missense_Mutation	SNP	C	C	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	19	46294321	46294321	C	T	SNP	DMWD	ENST00000270223	human	ensembl	69_37n	-1	known	missense	c.466	p.D156N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMWD	HGNC	ENSG00000185800	570	2	0.35	255	122	32.28	-	-	-
FBXL5	0	genome.wustl.edu	37	4	15627295	15627295	+	Missense_Mutation	SNP	G	G	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	4	15627295	15627295	G	T	SNP	FBXL5	ENST00000341285	human	ensembl	69_37n	-1	known	missense	c.1430	p.P477H	1.000	NULL	pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL5	HGNC	ENSG00000118564	424	1	0.23	209	193	47.77	-	-	-
MBD4	0	genome.wustl.edu	37	3	129152964	129152964	+	Missense_Mutation	SNP	C	C	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	3	129152964	129152964	C	T	SNP	MBD4	ENST00000249910	human	ensembl	69_37n	-1	known	missense	c.1217	p.R406Q	1.000	pirsf_Me_CpG-bd_MBD4	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_integrase-typ,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071	588	1	0.17	295	236	44.44	-	-	-
MUC12	0	genome.wustl.edu	37	7	100639971	100639971	+	Missense_Mutation	SNP	G	G	C			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	7	100639971	100639971	G	C	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.6556	p.V2186L	0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	15	0	0.00	6	3	33.33	-	-	-
MYB	0	genome.wustl.edu	37	6	135511361	135511361	+	Missense_Mutation	SNP	C	C	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	6	135511361	135511361	C	T	SNP	MYB	ENST00000341911	human	ensembl	69_37n	+1	known	missense	c.403	p.H135Y	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513	275	0	0.00	159	108	40.30	-	-	-
NCOR1	0	genome.wustl.edu	37	17	15965146	15965146	+	Missense_Mutation	SNP	G	G	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	15965146	15965146	G	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5450	p.A1817D	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	40	0	0.00	19	32	62.75	-	-	-
NCOR1	0	genome.wustl.edu	37	17	15965147	15965147	+	Missense_Mutation	SNP	C	C	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	15965147	15965147	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.5449	p.A1817T	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	40	0	0.00	19	31	60.78	-	-	-
PDE4C	0	genome.wustl.edu	37	19	18333013	18333013	+	Silent	SNP	C	C	G			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	19	18333013	18333013	C	G	SNP	PDE4C	ENST00000355502	human	ensembl	69_37n	-1	known	silent	c.363	p.L121	0.998	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650	95	0	0.00	34	25	42.37	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	207	1	0.48	134	95	41.48	-	-	-
PRSS37	0	genome.wustl.edu	37	7	141537798	141537798	+	Missense_Mutation	SNP	C	C	A			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	7	141537798	141537798	C	A	SNP	PRSS37	ENST00000350549	human	ensembl	69_37n	-1	known	missense	c.292	p.D98Y	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS37	HGNC	ENSG00000165076	409	0	0.00	195	157	44.60	-	-	-
PSMB6	0	genome.wustl.edu	37	17	4700075	4700075	+	Missense_Mutation	SNP	C	C	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	4700075	4700075	C	T	SNP	PSMB6	ENST00000270586	human	ensembl	69_37n	+1	known	missense	c.155	p.S52F	1.000	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB6	HGNC	ENSG00000142507	236	0	0.00	101	74	42.05	-	-	-
RIMBP2	0	genome.wustl.edu	37	12	130912757	130912757	+	Missense_Mutation	SNP	C	C	A			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	12	130912757	130912757	C	A	SNP	RIMBP2	ENST00000261655	human	ensembl	69_37n	-1	known	missense	c.2328	p.R776S	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	82	0	0.00	39	21	35.00	-	-	-
RMND1	0	genome.wustl.edu	37	6	151743699	151743699	+	Nonsense_Mutation	SNP	C	C	A			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	6	151743699	151743699	C	A	SNP	RMND1	ENST00000367303	human	ensembl	69_37n	-1	known	nonsense	c.979	p.E327*	1.000	pfam_DUF155	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906	110	0	0.00	92	30	24.59	-	-	-
RREB1	0	genome.wustl.edu	37	6	7189439	7189439	+	Silent	SNP	A	A	G			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	6	7189439	7189439	A	G	SNP	RREB1	ENST00000379938	human	ensembl	69_37n	+1	known	silent	c.309	p.G103	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782	72	0	0.00	22	30	57.69	-	-	-
SREBF1	0	genome.wustl.edu	37	17	17716752	17716752	+	Missense_Mutation	SNP	G	G	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	17	17716752	17716752	G	T	SNP	SREBF1	ENST00000578469	human	ensembl	69_37n	-1	known	missense	c.5	p.P2Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SREBF1	HGNC	ENSG00000072310	22	0	0.00	8	8	50.00	-	-	-
SULT1A2	0	genome.wustl.edu	37	16	28603690	28603690	+	Missense_Mutation	SNP	C	C	T			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	16	28603690	28603690	C	T	SNP	SULT1A2	ENST00000335715	human	ensembl	69_37n	-1	known	missense	c.669	p.M223I	0.002	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	SULT1A2	HGNC	ENSG00000197165	644	0	0.00	268	227	45.86	-	-	-
TEAD4	0	genome.wustl.edu	37	12	3104024	3104024	+	Missense_Mutation	SNP	T	T	G			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	12	3104024	3104024	T	G	SNP	TEAD4	ENST00000359864	human	ensembl	69_37n	+1	known	missense	c.92	p.L31R	0.996	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905	59	0	0.00	18	20	52.63	-	-	-
TRPC4AP	0	genome.wustl.edu	37	20	33591392	33591392	+	Silent	SNP	G	G	A			TCGA-C8-A133-01A-32D-A12B-09	TCGA-C8-A133-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	641e848d-e3e2-46a7-ad42-5e5672639816	3f217fec-f788-4fea-9a68-e28e5245f7e7	20	33591392	33591392	G	A	SNP	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	silent	c.2077	p.L693	1.000	pfam_DUF3689	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	52	0	0.00	22	17	43.59	-	-	-
