Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ASCC2	0	genome.wustl.edu	37	22	30210708	30210708	+	Missense_Mutation	SNP	T	T	G			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	22	30210708	30210708	T	G	SNP	ASCC2	ENST00000307790	human	ensembl	69_37n	-1	known	missense	c.658	p.N220H	0.755	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325	65	0	0.00	36	16	30.77	-	-	-
BEST1	0	genome.wustl.edu	37	11	61725644	61725644	+	Silent	SNP	C	C	T			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	11	61725644	61725644	C	T	SNP	BEST1	ENST00000449131	human	ensembl	69_37n	+1	known	silent	c.561	p.F187	1.000	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST1	HGNC	ENSG00000167995	89	0	0.00	57	16	21.92	-	-	-
C5orf52	0	genome.wustl.edu	37	5	157098676	157098676	+	Silent	SNP	C	C	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	5	157098676	157098676	C	A	SNP	C5orf52	ENST00000409999	human	ensembl	69_37n	+1	known	silent	c.54	p.I18	0.000	NULL	NULL	-	no_errors	C5orf52	HGNC	ENSG00000187658	12	0	0.00	3	6	66.67	-	-	-
CBFB	0	genome.wustl.edu	37	16	67116170	67116170	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	16	67116170	67116170	G	-	DEL	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	frame_shift_del	c.454	p.E152fs	1.000	pfam_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	60	0	0.00	16	17	50.00	-	-	-
COL15A1	0	genome.wustl.edu	37	9	101767249	101767249	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	9	101767249	101767249	G	T	SNP	COL15A1	ENST00000375001	human	ensembl	69_37n	+1	known	missense	c.1270	p.G424W	0.000	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291	34	0	0.00	26	4	13.33	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40383905	40383905	+	Silent	SNP	G	G	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	19	40383905	40383905	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.9705	p.C3235	0.488	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	12	0	0.00	12	7	36.84	-	-	-
GOLGA2	0	genome.wustl.edu	37	9	131024001	131024001	+	Silent	SNP	C	C	T			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	9	131024001	131024001	C	T	SNP	GOLGA2	ENST00000421699	human	ensembl	69_37n	-1	known	silent	c.1089	p.Q363	1.000	superfamily_CofA_tubulin-bd	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	46	0	0.00	24	17	41.46	-	-	-
HMGXB4	0	genome.wustl.edu	37	22	35661544	35661544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	22	35661544	35661544	A	-	DEL	HMGXB4	ENST00000216106	human	ensembl	69_37n	+1	known	frame_shift_del	c.1163	p.K391fs	1.000	superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	18	0	0.00	17	2	10.00	-	-	-
IGSF10	0	genome.wustl.edu	37	3	151163762	151163762	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	151163762	151163762	G	T	SNP	IGSF10	ENST00000282466	human	ensembl	69_37n	-1	known	missense	c.4007	p.T1336K	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF10	HGNC	ENSG00000152580	101	1	0.98	55	32	36.36	-	-	-
IRF8	0	genome.wustl.edu	37	16	85952387	85952387	+	Silent	SNP	C	C	T			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	16	85952387	85952387	C	T	SNP	IRF8	ENST00000268638	human	ensembl	69_37n	+1	known	silent	c.966	p.F322	0.990	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF8	HGNC	ENSG00000140968	24	0	0.00	3	8	72.73	-	-	-
MYLIP	0	genome.wustl.edu	37	6	16145378	16145378	+	Missense_Mutation	SNP	T	T	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	6	16145378	16145378	T	A	SNP	MYLIP	ENST00000356840	human	ensembl	69_37n	+1	known	missense	c.1078	p.C360S	1.000	NULL	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	MYLIP	HGNC	ENSG00000007944	37	0	0.00	22	8	26.67	-	-	-
NLRC3	0	genome.wustl.edu	37	16	3598192	3598192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	16	3598192	3598192	C	-	DEL	NLRC3	ENST00000448023	human	ensembl	69_37n	-1	known	frame_shift_del	c.2852	p.G951fs	0.023	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984	49	0	0.00	55	18	24.66	-	-	-
P2RY1	0	genome.wustl.edu	37	3	152554180	152554180	+	Silent	SNP	C	C	T			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	152554180	152554180	C	T	SNP	P2RY1	ENST00000305097	human	ensembl	69_37n	+1	known	silent	c.609	p.Y203	0.467	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	P2RY1	HGNC	ENSG00000169860	111	0	0.00	60	40	40.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	48	0	0.00	27	23	46.00	-	-	-
PLEKHA2	0	genome.wustl.edu	37	8	38775523	38775523	+	Silent	SNP	C	C	T			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	8	38775523	38775523	C	T	SNP	PLEKHA2	ENST00000420274	human	ensembl	69_37n	+1	known	silent	c.76	p.L26	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499	86	0	0.00	68	39	36.45	-	-	-
PM20D1	0	genome.wustl.edu	37	1	205813220	205813220	+	Silent	SNP	G	G	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	1	205813220	205813220	G	A	SNP	PM20D1	ENST00000367136	human	ensembl	69_37n	-1	known	silent	c.702	p.I234	0.994	pfam_Peptidase_M20	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877	41	0	0.00	30	26	46.43	-	-	-
POTEF	0	genome.wustl.edu	37	2	130832873	130832873	+	Silent	SNP	G	G	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	2	130832873	130832873	G	A	SNP	POTEF	ENST00000357462	human	ensembl	69_37n	-1	known	silent	c.2172	p.D724	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	POTEF	HGNC	ENSG00000196604	35	0	0.00	44	7	13.73	-	-	-
RIF1	0	genome.wustl.edu	37	2	152320011	152320011	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	2	152320011	152320011	A	G	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	+1	known	missense	c.3977	p.N1326S	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	41	0	0.00	48	16	25.00	-	-	-
RRM1	0	genome.wustl.edu	37	11	4127418	4127418	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	11	4127418	4127418	C	G	SNP	RRM1	ENST00000300738	human	ensembl	69_37n	+1	known	missense	c.251	p.S84C	1.000	pfam_ATP-cone,superfamily_Ribnucl_Rdtase_R1-su_N,pfscan_ATP-cone	pfam_Ribncl_red_lg_C,pfam_Ribncl_Rdtase_lsu_N,pfam_ATP-cone,superfamily_Ribnucl_Rdtase_R1-su_N,pfscan_ATP-cone,prints_Ribncl_red_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325	39	0	0.00	20	21	51.22	-	-	-
SLC7A14	0	genome.wustl.edu	37	3	170244644	170244644	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	3	170244644	170244644	G	A	SNP	SLC7A14	ENST00000231706	human	ensembl	69_37n	-1	known	missense	c.82	p.R28C	1.000	NULL	pfam_AA-permease_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	77	0	0.00	66	44	40.00	-	-	-
ST3GAL1	0	genome.wustl.edu	37	8	134477071	134477071	+	Silent	SNP	G	G	A			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	8	134477071	134477071	G	A	SNP	ST3GAL1	ENST00000319914	human	ensembl	69_37n	-1	known	silent	c.633	p.T211	0.596	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513	42	0	0.00	104	24	18.75	-	-	-
THADA	0	genome.wustl.edu	37	2	43798926	43798926	+	Missense_Mutation	SNP	A	A	C			TCGA-D8-A1XS-01A-11D-A14K-09	TCGA-D8-A1XS-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5d302c04-302e-4040-9429-37cd672e8d53	9b6db1ae-c8eb-4b02-9913-76070077fedf	2	43798926	43798926	A	C	SNP	THADA	ENST00000405006	human	ensembl	69_37n	-1	known	missense	c.1984	p.W662G	1.000	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	57	0	0.00	36	21	36.84	-	-	-
