Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB11	0	genome.wustl.edu	37	2	169814622	169814622	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	2	169814622	169814622	A	C	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	missense	c.2195	p.V732G	0.663	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	80	0	0.00	29	17	36.96	-	-	-
AK8	0	genome.wustl.edu	37	9	135702351	135702351	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	9	135702351	135702351	G	T	SNP	AK8	ENST00000298545	human	ensembl	69_37n	-1	known	missense	c.647	p.A216D	0.021	pfam_Adenylate_kin	pfam_Adenylate_kin,superfamily_Adenylate_kinase_lid-dom,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin	-	no_errors	AK8	HGNC	ENSG00000165695	266	0	0.00	101	32	24.06	-	-	-
ANGPT4	0	genome.wustl.edu	37	20	896760	896760	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	20	896760	896760	C	T	SNP	ANGPT4	ENST00000381922	human	ensembl	69_37n	-1	known	missense	c.98	p.C33Y	0.004	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT4	HGNC	ENSG00000101280	171	0	0.00	62	14	18.42	-	-	-
BCOR	0	genome.wustl.edu	37	X	39937122	39937122	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	X	39937122	39937122	G	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.61	p.R21C	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	153	0	0.00	90	31	25.62	-	-	-
BMP3	0	genome.wustl.edu	37	4	81967479	81967479	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	4	81967479	81967479	C	T	SNP	BMP3	ENST00000282701	human	ensembl	69_37n	+1	known	missense	c.904	p.L302F	1.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785	131	0	0.00	19	30	61.22	-	-	-
BMP6	0	genome.wustl.edu	37	6	7845540	7845540	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	6	7845540	7845540	C	G	SNP	BMP6	ENST00000283147	human	ensembl	69_37n	+1	known	missense	c.832	p.Q278E	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162	171	0	0.00	76	84	52.50	-	-	-
BTBD10	0	genome.wustl.edu	37	11	13410404	13410404	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	13410404	13410404	G	A	SNP	BTBD10	ENST00000278174	human	ensembl	69_37n	-1	known	missense	c.1402	p.P468S	1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925	113	0	0.00	38	12	24.00	-	-	-
C12orf39	0	genome.wustl.edu	37	12	21679844	21679844	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	21679844	21679844	A	G	SNP	C12orf39	ENST00000256969	human	ensembl	69_37n	+1	known	missense	c.31	p.T11A	0.000	NULL	NULL	-	no_errors	C12orf39	HGNC	ENSG00000134548	382	1	0.26	143	130	47.62	-	-	-
CASP2	0	genome.wustl.edu	37	7	142991361	142991361	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	7	142991361	142991361	G	T	SNP	CASP2	ENST00000310447	human	ensembl	69_37n	+1	known	missense	c.514	p.V172F	0.962	pirsf_Caspase_IL-1_beta	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP2	HGNC	ENSG00000106144	347	0	0.00	122	96	44.04	-	-	-
CCDC50	0	genome.wustl.edu	37	3	191093245	191093245	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	191093245	191093245	A	T	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	+1	known	missense	c.843	p.Q281H	0.742	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	202	0	0.00	102	16	13.56	-	-	-
CD38	0	genome.wustl.edu	37	4	15818139	15818139	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	4	15818139	15818139	T	C	SNP	CD38	ENST00000226279	human	ensembl	69_37n	+1	known	missense	c.239	p.V80A	0.000	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	CD38	HGNC	ENSG00000004468	178	0	0.00	49	42	46.15	-	-	-
CHAD	0	genome.wustl.edu	37	17	48545782	48545782	+	Silent	SNP	G	G	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	17	48545782	48545782	G	A	SNP	CHAD	ENST00000258969	human	ensembl	69_37n	-1	known	silent	c.393	p.D131	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CHAD	HGNC	ENSG00000136457	94	0	0.00	40	36	46.75	-	-	-
CTNNB1	0	genome.wustl.edu	37	3	41268806	41268806	+	Silent	SNP	T	T	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	41268806	41268806	T	A	SNP	CTNNB1	ENST00000349496	human	ensembl	69_37n	+1	known	silent	c.1044	p.S348	0.987	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,prints_Beta-catenin,pfscan_Armadillo	-	no_errors	CTNNB1	HGNC	ENSG00000168036	220	0	0.00	82	69	45.70	-	-	-
CTRB2	0	genome.wustl.edu	37	16	75239875	75239875	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	16	75239875	75239875	G	T	SNP	CTRB2	ENST00000303037	human	ensembl	69_37n	-1	known	missense	c.172	p.H58N	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CTRB2	HGNC	ENSG00000168928	11	0	0.00	2	2	50.00	-	-	-
CYP2F1	0	genome.wustl.edu	37	19	41627952	41627952	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	41627952	41627952	G	T	SNP	CYP2F1	ENST00000331105	human	ensembl	69_37n	+1	known	missense	c.736	p.A246S	0.224	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446	149	0	0.00	53	64	54.70	-	-	-
DALRD3	0	genome.wustl.edu	37	3	49053757	49053757	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	49053757	49053757	G	C	SNP	DALRD3	ENST00000341949	human	ensembl	69_37n	-1	known	missense	c.1163	p.A388G	0.000	NULL	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd	-	no_errors	DALRD3	HGNC	ENSG00000178149	132	0	0.00	72	14	16.28	-	-	-
ENSG00000257033	0	genome.wustl.edu	37	1	20977053	20977053	+	Splice_Site	SNP	T	T	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	20977053	20977053	T	G	SNP	ENSG00000257033	ENST00000535128	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.001	-	-	-	no_coding_region:pseudogene	AL391357.1	Clone_based_ensembl_gene	ENSG00000257033	152	0	0.00	44	24	35.29	-	-	-
F2	0	genome.wustl.edu	37	11	46744957	46744957	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	46744957	46744957	G	T	SNP	F2	ENST00000311907	human	ensembl	69_37n	+1	known	missense	c.448	p.A150S	0.171	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pirsf_Peptidase_S1A_prothrombin,pfscan_Kringle	pfam_Peptidase_S1_S6,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1_S6,pirsf_Peptidase_S1A_prothrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A_prothrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210	87	0	0.00	44	30	40.54	-	-	-
FAT2	0	genome.wustl.edu	37	5	150905430	150905430	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	5	150905430	150905430	C	A	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	missense	c.10405	p.G3469W	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	108	0	0.00	81	37	31.36	-	-	-
FAT2	0	genome.wustl.edu	37	5	150924172	150924172	+	Silent	SNP	C	C	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	5	150924172	150924172	C	T	SNP	FAT2	ENST00000261800	human	ensembl	69_37n	-1	known	silent	c.6516	p.Q2172	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	84	0	0.00	22	26	54.17	-	-	-
FHOD1	0	genome.wustl.edu	37	16	67265611	67265611	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	16	67265611	67265611	C	A	SNP	FHOD1	ENST00000258201	human	ensembl	69_37n	-1	known	missense	c.2314	p.A772S	0.971	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHOD1	HGNC	ENSG00000135723	266	0	0.00	58	37	38.95	-	-	-
GHITM	0	genome.wustl.edu	37	10	85901316	85901316	+	Silent	SNP	T	T	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	10	85901316	85901316	T	G	SNP	GHITM	ENST00000372134	human	ensembl	69_37n	+1	known	silent	c.60	p.A20	0.000	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GHITM	HGNC	ENSG00000165678	232	0	0.00	147	29	16.48	-	-	-
GPR98	0	genome.wustl.edu	37	5	89939720	89939720	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	5	89939720	89939720	A	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	+1	known	missense	c.2654	p.D885V	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	324	0	0.00	98	103	51.24	-	-	-
HMCN1	0	genome.wustl.edu	37	1	185984569	185984569	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	185984569	185984569	G	C	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.4909	p.V1637L	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	234	0	0.00	58	32	35.56	-	-	-
IGSF1	0	genome.wustl.edu	37	X	130409100	130409100	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	X	130409100	130409100	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	nonsense	c.3360	p.Y1120*	0.997	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	215	0	0.00	72	101	58.38	-	-	-
KRTAP5-10	0	genome.wustl.edu	37	11	71276905	71276905	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	71276905	71276905	A	C	SNP	KRTAP5-10	ENST00000398531	human	ensembl	69_37n	+1	known	missense	c.272	p.K91T	0.636	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572	107	0	0.00	63	33	34.38	-	-	-
LMBR1L	0	genome.wustl.edu	37	12	49499717	49499717	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	49499717	49499717	T	C	SNP	LMBR1L	ENST00000267102	human	ensembl	69_37n	-1	known	missense	c.181	p.N61D	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1L	HGNC	ENSG00000139636	264	0	0.00	236	46	16.31	-	-	-
LTF	0	genome.wustl.edu	37	3	46501161	46501161	+	Silent	SNP	A	A	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	3	46501161	46501161	A	G	SNP	LTF	ENST00000231751	human	ensembl	69_37n	-1	known	silent	c.192	p.C64	0.531	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	LTF	HGNC	ENSG00000012223	274	0	0.00	115	85	42.50	-	-	-
MBOAT1	0	genome.wustl.edu	37	6	20144468	20144468	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	6	20144468	20144468	G	A	SNP	MBOAT1	ENST00000541730	human	ensembl	69_37n	-1	known	missense	c.11	p.S4L	0.999	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	276	0	0.00	242	32	11.68	-	-	-
NFYB	0	genome.wustl.edu	37	12	104519903	104519903	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	104519903	104519903	G	A	SNP	NFYB	ENST00000240055	human	ensembl	69_37n	-1	known	nonsense	c.220	p.Q74*	1.000	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold,prints_Transcrpt_fac_CBFA/NFYB_topo	-	no_errors	NFYB	HGNC	ENSG00000120837	714	0	0.00	360	68	15.85	-	-	-
NLRP12	0	genome.wustl.edu	37	19	54312951	54312951	+	Silent	SNP	C	C	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	54312951	54312951	C	T	SNP	NLRP12	ENST00000391773	human	ensembl	69_37n	-1	known	silent	c.1962	p.L654	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	97	0	0.00	35	9	20.45	-	-	-
PGK2	0	genome.wustl.edu	37	6	49753845	49753845	+	Silent	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	6	49753845	49753845	G	T	SNP	PGK2	ENST00000304801	human	ensembl	69_37n	-1	known	silent	c.1056	p.T352	0.998	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK2	HGNC	ENSG00000170950	325	0	0.00	149	35	19.02	-	-	-
PIP4K2C	0	genome.wustl.edu	37	12	57987825	57987825	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	12	57987825	57987825	G	T	SNP	PIP4K2C	ENST00000354947	human	ensembl	69_37n	+1	known	missense	c.192	p.Q64H	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908	242	0	0.00	107	132	55.23	-	-	-
POU2F2	0	genome.wustl.edu	37	19	42596350	42596350	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	42596350	42596350	C	T	SNP	POU2F2	ENST00000342301	human	ensembl	69_37n	-1	known	missense	c.1271	p.G424E	1.000	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277	8	0	0.00	25	15	37.50	-	-	-
PTGER3	0	genome.wustl.edu	37	1	71318542	71318542	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	71318542	71318542	C	G	SNP	PTGER3	ENST00000460330	human	ensembl	69_37n	-1	known	missense	c.1105	p.E369Q	0.987	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_supfam,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628	198	0	0.00	72	58	44.62	-	-	-
SCN2A	0	genome.wustl.edu	37	2	166179821	166179822	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	2	166179821	166179822	CT	-	DEL	SCN2A	ENST00000283256	human	ensembl	69_37n	+1	known	frame_shift_del	c.1827_1828	p.L611fs	1.000:1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	169	0	0.00	47	20	29.85	-	-	-
SHROOM4	0	genome.wustl.edu	37	X	50350476	50350476	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	X	50350476	50350476	G	C	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.3666	p.H1222Q	0.000	pfam_ASD2	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	202	0	0.00	74	47	38.84	-	-	-
SMC1B	0	genome.wustl.edu	37	22	45804622	45804622	+	Silent	SNP	G	G	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	22	45804622	45804622	G	A	SNP	SMC1B	ENST00000357450	human	ensembl	69_37n	-1	known	silent	c.267	p.G89	0.803	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935	180	0	0.00	46	28	37.84	-	-	-
THEM5	0	genome.wustl.edu	37	1	151823599	151823599	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	151823599	151823599	A	G	SNP	THEM5	ENST00000368817	human	ensembl	69_37n	-1	known	missense	c.394	p.F132L	1.000	NULL	pfam_Thioestr_supf	-	no_errors	THEM5	HGNC	ENSG00000196407	257	1	0.39	145	89	37.87	-	-	-
TMEM91	0	genome.wustl.edu	37	19	41889743	41889743	+	Silent	SNP	C	C	T			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	19	41889743	41889743	C	T	SNP	TMEM91	ENST00000392002	human	ensembl	69_37n	+1	known	silent	c.484	p.L162	1.000	NULL	pfam_Interferon-induced_TM_protein	-	no_errors	TMEM91	HGNC	ENSG00000142046	71	0	0.00	63	13	17.11	-	-	-
TPCN2	0	genome.wustl.edu	37	11	68825062	68825062	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	11	68825062	68825062	G	C	SNP	TPCN2	ENST00000294309	human	ensembl	69_37n	+1	known	missense	c.446	p.W149S	0.992	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341	384	0	0.00	195	117	37.38	-	-	-
TRAF5	0	genome.wustl.edu	37	1	211545718	211545718	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	211545718	211545718	G	-	DEL	TRAF5	ENST00000261464	human	ensembl	69_37n	+1	known	frame_shift_del	c.1348	p.D451fs	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF5	HGNC	ENSG00000082512	93	0	0.00	56	15	21.13	-	-	-
UCK2	0	genome.wustl.edu	37	1	165859581	165859581	+	Silent	SNP	G	G	A			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	1	165859581	165859581	G	A	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	+1	known	silent	c.240	p.Q80	1.000	pfam_PRK/URK,pfam_Depp_CoAkinase,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	251	0	0.00	149	27	15.34	-	-	-
USPL1	0	genome.wustl.edu	37	13	31232168	31232168	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	13	31232168	31232168	A	G	SNP	USPL1	ENST00000255304	human	ensembl	69_37n	+1	known	missense	c.1954	p.I652V	0.000	NULL	pfscan_Peptidase_C19	-	no_errors	USPL1	HGNC	ENSG00000132952	166	0	0.00	11	38	77.55	-	-	-
ZWILCH	0	genome.wustl.edu	37	15	66829513	66829513	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A15S-01A-11D-A10Y-09	TCGA-E2-A15S-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd	9c963e55-136d-498c-b440-09d4fc3f74de	15	66829513	66829513	A	C	SNP	ZWILCH	ENST00000307897	human	ensembl	69_37n	+1	known	missense	c.1486	p.I496L	1.000	pfam_RZZ-complex_zwilch	pfam_RZZ-complex_zwilch	-	no_errors	ZWILCH	HGNC	ENSG00000174442	286	1	0.35	146	25	14.62	-	-	-
