Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS5	0	genome.wustl.edu	37	21	28305265	28305265	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	21	28305265	28305265	G	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.1788	p.N596K	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	182	0	0.00	100	54	35.06	-	-	-
ATP8B3	0	genome.wustl.edu	37	19	1802548	1802548	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	19	1802548	1802548	A	C	SNP	ATP8B3	ENST00000539485	human	ensembl	69_37n	-1	known	missense	c.1001	p.L334R	0.984	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8B3	HGNC	ENSG00000130270	220	0	0.00	113	51	30.91	-	-	-
BMP8B	0	genome.wustl.edu	37	1	40226145	40226145	+	Silent	SNP	A	A	G			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	40226145	40226145	A	G	SNP	BMP8B	ENST00000372827	human	ensembl	69_37n	-1	known	silent	c.1155	p.N385	0.946	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP8B	HGNC	ENSG00000116985	78	0	0.00	38	5	11.63	-	-	-
CD96	0	genome.wustl.edu	37	3	111304209	111304209	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	3	111304209	111304209	C	A	SNP	CD96	ENST00000283285	human	ensembl	69_37n	+1	known	missense	c.839	p.T280K	0.000	pfscan_Ig-like	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD96	HGNC	ENSG00000153283	278	0	0.00	192	117	37.86	-	-	-
CDHR2	0	genome.wustl.edu	37	5	176004515	176004515	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	176004515	176004515	C	T	SNP	CDHR2	ENST00000261944	human	ensembl	69_37n	+1	known	missense	c.1310	p.A437V	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276	80	0	0.00	29	14	31.82	-	-	-
DNAH5	0	genome.wustl.edu	37	5	13902213	13902213	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	13902213	13902213	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	69_37n	-1	known	missense	c.1679	p.A560V	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139	210	0	0.00	238	93	28.01	-	-	-
DOCK3	0	genome.wustl.edu	37	3	51393602	51393602	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	3	51393602	51393602	C	A	SNP	DOCK3	ENST00000266037	human	ensembl	69_37n	+1	known	missense	c.4332	p.S1444R	1.000	pfam_DOCK	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	222	0	0.00	127	67	34.18	-	-	-
DSG1	0	genome.wustl.edu	37	18	28934692	28934692	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	18	28934692	28934692	G	C	SNP	DSG1	ENST00000257192	human	ensembl	69_37n	+1	known	missense	c.2533	p.D845H	0.997	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmo_cadherin,pfscan_Cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760	148	0	0.00	83	56	40.29	-	-	-
ELAC2	0	genome.wustl.edu	37	17	12897055	12897055	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	17	12897055	12897055	G	A	SNP	ELAC2	ENST00000584650	human	ensembl	69_37n	-1	novel	missense	c.1601	p.S534F	0.996	NULL	pfam_Beta-lactamas-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ELAC2	HGNC	ENSG00000006744	148	0	0.00	83	36	30.00	-	-	-
ENOX1	0	genome.wustl.edu	37	13	43810874	43810874	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	13	43810874	43810874	C	A	SNP	ENOX1	ENST00000261488	human	ensembl	69_37n	-1	known	nonsense	c.1612	p.E538*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	316	1	0.32	238	150	38.56	-	-	-
FCHO1	0	genome.wustl.edu	37	19	17883272	17883272	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	19	17883272	17883272	C	T	SNP	FCHO1	ENST00000252771	human	ensembl	69_37n	+1	known	nonsense	c.601	p.Q201*	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH,superfamily_Clathrin_mu_C,smart_FCH,pfscan_FCH	-	no_errors	FCHO1	HGNC	ENSG00000130475	137	0	0.00	52	43	44.79	-	-	-
GP1BA	0	genome.wustl.edu	37	17	4837651	4837651	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	17	4837651	4837651	G	C	SNP	GP1BA	ENST00000329125	human	ensembl	69_37n	+1	known	missense	c.1752	p.R584S	0.281	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245	121	0	0.00	48	29	37.66	-	-	-
HIP1R	0	genome.wustl.edu	37	12	123345688	123345688	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	12	123345688	123345688	T	G	SNP	HIP1R	ENST00000253083	human	ensembl	69_37n	+1	known	missense	c.2901	p.D967E	1.000	pfam_ILWEQ,smart_ILWEQ,pfscan_ILWEQ	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1R	HGNC	ENSG00000130787	43	0	0.00	16	12	42.86	-	-	-
KATNB1	0	genome.wustl.edu	37	16	57786814	57786814	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	16	57786814	57786814	G	A	SNP	KATNB1	ENST00000379661	human	ensembl	69_37n	+1	known	missense	c.829	p.D277N	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854	30	0	0.00	3	8	66.67	-	-	-
KLHL30	0	genome.wustl.edu	37	2	239049614	239049614	+	Silent	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	2	239049614	239049614	C	T	SNP	KLHL30	ENST00000409223	human	ensembl	69_37n	+1	known	silent	c.219	p.R73	0.612	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL30	HGNC	ENSG00000168427	27	0	0.00	9	10	52.63	-	-	-
KRBA1	0	genome.wustl.edu	37	7	149427674	149427674	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	7	149427674	149427674	C	T	SNP	KRBA1	ENST00000496259	human	ensembl	69_37n	+1	known	missense	c.1849	p.P617S	0.005	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KRBA1	HGNC	ENSG00000133619	17	0	0.00	7	7	50.00	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56178085	56178085	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	56178085	56178085	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	nonsense	c.3058	p.Q1020*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	117	0	0.00	64	58	47.54	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56178466	56178467	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	5	56178466	56178467	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.3439_3440	p.T1148fs	1.000:0.998	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	158	0	0.00	130	55	29.73	-	-	-
NPHP4	0	genome.wustl.edu	37	1	5964847	5964847	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	5964847	5964847	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.1973	p.R658Q	0.001	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	108	0	0.00	47	30	37.97	-	-	-
OLFML2A	0	genome.wustl.edu	37	9	127563854	127563854	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	9	127563854	127563854	G	T	SNP	OLFML2A	ENST00000373580	human	ensembl	69_37n	+1	known	missense	c.831	p.K277N	1.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585	64	0	0.00	34	17	33.33	-	-	-
PCNXL2	0	genome.wustl.edu	37	1	233136233	233136233	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	233136233	233136233	C	A	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	nonsense	c.5146	p.E1716*	1.000	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	143	0	0.00	65	36	35.64	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	221	0	0.00	222	121	35.28	-	-	-
PNMAL2	0	genome.wustl.edu	37	19	46998318	46998318	+	Silent	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	19	46998318	46998318	C	T	SNP	PNMAL2	ENST00000377655	human	ensembl	69_37n	-1	known	silent	c.405	p.T135	0.001	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851	37	0	0.00	15	8	34.78	-	-	-
POLR2J	0	genome.wustl.edu	37	7	102119254	102119256	+	Splice_Site	DEL	CTT	CTT	-			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	7	102119254	102119256	CTT	-	DEL	POLR2J	ENST00000393794	human	ensembl	69_37n	-1	known	splice_site_del	c.53+3_53+1	e2-1	1.000:1.000:1.000	-	-	-	no_errors	POLR2J	HGNC	ENSG00000005075	13	0	0.00	5	3	37.50	-	-	-
RGS3	0	genome.wustl.edu	37	9	116346360	116346360	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	9	116346360	116346360	G	A	SNP	RGS3	ENST00000350696	human	ensembl	69_37n	+1	known	missense	c.2668	p.E890K	0.806	NULL	pfam_Regulat_G_prot_signal,pfam_C2_Ca-dep,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,smart_C2_Ca-dep,smart_PDZ,smart_Regulat_G_prot_signal,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS3	HGNC	ENSG00000138835	161	0	0.00	50	38	43.18	-	-	-
SDHB	0	genome.wustl.edu	37	1	17355201	17355201	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	17355201	17355201	T	C	SNP	SDHB	ENST00000375499	human	ensembl	69_37n	-1	known	missense	c.317	p.N106S	0.998	superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Succ_DH/fum_Rdtase_Fe-S	superfamily_Helical_ferredxn,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Succ_DH/fum_Rdtase_Fe-S	-	no_errors	SDHB	HGNC	ENSG00000117118	341	0	0.00	200	106	34.53	-	-	-
SLC52A2	0	genome.wustl.edu	37	8	145584626	145584626	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	8	145584626	145584626	A	G	SNP	SLC52A2	ENST00000329994	human	ensembl	69_37n	+1	known	missense	c.1289	p.Y430C	0.999	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A2	HGNC	ENSG00000185803	97	0	0.00	32	26	44.07	-	-	-
SMARCA2	0	genome.wustl.edu	37	9	2088587	2088587	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	9	2088587	2088587	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	+1	known	missense	c.2857	p.E953K	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	173	0	0.00	48	131	73.18	-	-	-
SNORA48	0	genome.wustl.edu	37	17	7478063	7478063	+	RNA	SNP	G	G	C			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	17	7478063	7478063	G	C	SNP	SNORA48	ENST00000386847	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORA48	HGNC	ENSG00000209582	23	0	0.00	18	10	35.71	-	-	-
SPATA1	0	genome.wustl.edu	37	1	85018792	85018792	+	RNA	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	1	85018792	85018792	C	T	SNP	SPATA1	ENST00000460286	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.616	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	26	0	0.00	42	25	37.31	-	-	-
STAG2	0	genome.wustl.edu	37	X	123211834	123211834	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	X	123211834	123211834	A	G	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	+1	known	missense	c.2701	p.K901E	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972	341	0	0.00	262	136	34.17	-	-	-
TMSB15A	0	genome.wustl.edu	37	X	101769050	101769050	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	X	101769050	101769050	T	G	SNP	TMSB15A	ENST00000289373	human	ensembl	69_37n	-1	known	missense	c.103	p.I35L	0.948	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_chordata	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_chordata	-	no_errors	TMSB15A	HGNC	ENSG00000158164	509	0	0.00	356	191	34.92	-	-	-
TPTE	0	genome.wustl.edu	37	21	10921971	10921971	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	21	10921971	10921971	G	A	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.1052	p.A351V	0.221	pfam_Dual-sp_phosphatase_cat-dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	375	0	0.00	338	65	15.97	-	-	-
USP34	0	genome.wustl.edu	37	2	61492669	61492669	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	2	61492669	61492669	A	G	SNP	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	missense	c.5641	p.Y1881H	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	190	0	0.00	129	74	36.45	-	-	-
XYLT2	0	genome.wustl.edu	37	17	48433561	48433561	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	17	48433561	48433561	T	C	SNP	XYLT2	ENST00000017003	human	ensembl	69_37n	+1	known	missense	c.1421	p.I474T	1.000	pfam_Glyco_trans_14	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	68	0	0.00	27	19	41.30	-	-	-
ZNF718	0	genome.wustl.edu	37	4	155283	155283	+	RNA	SNP	C	C	T			TCGA-E2-A1B4-01A-11D-A12Q-09	TCGA-E2-A1B4-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6aa4529-7996-4b66-9632-2559293db35d	45514149-d01b-4bc9-864b-ed556da905c1	4	155283	155283	C	T	SNP	ZNF718	ENST00000400172	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	132	0	0.00	100	60	37.50	-	-	-
