Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ASXL3	0	genome.wustl.edu	37	18	31326555	31326555	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	18	31326555	31326555	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	+1	known	missense	c.6743	p.R2248Q	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	67	0	0.00	31	7	17.95	-	-	-
C20orf72	0	genome.wustl.edu	37	20	17950658	17950658	+	Silent	SNP	C	C	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	20	17950658	17950658	C	T	SNP	C20orf72	ENST00000377710	human	ensembl	69_37n	+1	known	silent	c.156	p.Y52	0.229	NULL	superfamily_Restrct_endonuc-II-like	-	no_errors	C20orf72	HGNC	ENSG00000125871	36	0	0.00	22	6	21.43	-	-	-
C5orf56	0	genome.wustl.edu	37	5	131796262	131796262	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	5	131796262	131796262	C	T	SNP	C5orf56	ENST00000337752	human	ensembl	69_37n	+1	novel	nonsense	c.97	p.Q33*	0.001	NULL	NULL	-	no_errors	C5orf56	HGNC	ENSG00000197536	154	1	0.65	69	13	15.85	-	-	-
CHD7	0	genome.wustl.edu	37	8	61766023	61766023	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	8	61766023	61766023	G	T	SNP	CHD7	ENST00000307121	human	ensembl	69_37n	+1	known	missense	c.6739	p.D2247Y	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	34	0	0.00	14	12	46.15	-	-	-
DOCK10	0	genome.wustl.edu	37	2	225662592	225662592	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	2	225662592	225662592	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.4601	p.A1534E	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	61	0	0.00	31	5	13.89	-	-	-
EIF2B1	0	genome.wustl.edu	37	12	124110991	124110991	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	12	124110991	124110991	C	G	SNP	EIF2B1	ENST00000424014	human	ensembl	69_37n	-1	known	missense	c.532	p.V178L	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361	104	0	0.00	29	28	49.12	-	-	-
ENSG00000257921	0	genome.wustl.edu	37	12	58177049	58177049	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	12	58177049	58177049	G	A	SNP	ENSG00000257921	ENST00000546504	human	ensembl	69_37n	+1	putative	nonsense	c.233	p.W78*	1.000	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	RP11-571M6.15	Clone_based_vega_gene	ENSG00000257921	68	0	0.00	18	7	28.00	-	-	-
EPPK1	0	genome.wustl.edu	37	8	144945188	144945188	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	8	144945188	144945188	C	G	SNP	EPPK1	ENST00000525985	human	ensembl	69_37n	-1	known	missense	c.2234	p.R745P	0.854	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184	90	0	0.00	35	5	12.20	-	-	-
FAM160A2	0	genome.wustl.edu	37	11	6239328	6239328	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	11	6239328	6239328	G	-	DEL	FAM160A2	ENST00000265978	human	ensembl	69_37n	-1	known	frame_shift_del	c.1530	p.S511fs	1.000	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009	31	0	0.00	9	2	18.18	-	-	-
FAM71B	0	genome.wustl.edu	37	5	156589497	156589497	+	Silent	SNP	C	C	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	5	156589497	156589497	C	T	SNP	FAM71B	ENST00000302938	human	ensembl	69_37n	-1	known	silent	c.1779	p.E593	0.077	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613	99	0	0.00	46	15	24.59	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29612261	29612261	+	RNA	SNP	G	G	A			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	20	29612261	29612261	G	A	SNP	FRG1B	ENST00000482423	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	31	0	0.00	14	3	17.65	-	-	-
GMDS	0	genome.wustl.edu	37	6	1930370	1930370	+	Silent	SNP	T	T	C			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	6	1930370	1930370	T	C	SNP	GMDS	ENST00000380815	human	ensembl	69_37n	-1	known	silent	c.738	p.K246	0.991	pfam_Epimerase_deHydtase,tigrfam_GDP_Man_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	-	no_errors	GMDS	HGNC	ENSG00000112699	77	0	0.00	26	12	31.58	-	-	-
HIST1H2AK	0	genome.wustl.edu	37	6	27805735	27805735	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	6	27805735	27805735	T	C	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	missense	c.383	p.K128R	1.000	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	127	0	0.00	39	14	26.42	-	-	-
NAMPTL	0	genome.wustl.edu	37	10	36811974	36811974	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	10	36811974	36811974	C	A	SNP	NAMPTL	ENST00000543053	human	ensembl	69_37n	-1	known	missense	c.133	p.D45Y	1.000	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C	-	no_errors	NAMPTL	HGNC	ENSG00000229644	124	0	0.00	59	13	18.06	-	-	-
OR8U1	0	genome.wustl.edu	37	11	56143720	56143720	+	Silent	SNP	C	C	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	11	56143720	56143720	C	T	SNP	OR8U1	ENST00000302270	human	ensembl	69_37n	+1	known	silent	c.621	p.F207	0.001	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR8U1	HGNC	ENSG00000172199	171	0	0.00	72	18	20.00	-	-	-
PFKL	0	genome.wustl.edu	37	21	45745847	45745847	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	21	45745847	45745847	G	-	DEL	PFKL	ENST00000403390	human	ensembl	69_37n	+1	known	frame_shift_del	c.2134	p.G712fs	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959	63	0	0.00	17	2	10.53	-	-	-
PI4KAP1	0	genome.wustl.edu	37	22	20383855	20383855	+	RNA	SNP	C	C	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	22	20383855	20383855	C	T	SNP	PI4KAP1	ENST00000430523	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PI4KAP1	HGNC	ENSG00000215513	60	0	0.00	19	3	13.64	-	-	-
PRKACA	0	genome.wustl.edu	37	19	14208444	14208444	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	19	14208444	14208444	A	T	SNP	PRKACA	ENST00000308677	human	ensembl	69_37n	-1	known	missense	c.589	p.W197R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062	65	0	0.00	16	7	30.43	-	-	-
TMPRSS2	0	genome.wustl.edu	37	21	42838079	42838079	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	21	42838079	42838079	G	T	SNP	TMPRSS2	ENST00000398585	human	ensembl	69_37n	-1	known	missense	c.1580	p.A527E	0.780	superfamily_Pept_cys/ser_Trypsin-like	pfam_Peptidase_S1_S6,pfam_Srcr_rcpt,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_LDrepeatLR_classA_rpt,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TMPRSS2	HGNC	ENSG00000184012	68	0	0.00	39	5	11.36	-	-	-
TRA2A	0	genome.wustl.edu	37	7	23545185	23545185	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	7	23545185	23545185	C	-	DEL	TRA2A	ENST00000297071	human	ensembl	69_37n	-1	known	frame_shift_del	c.842	p.R281fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2A	HGNC	ENSG00000164548	21	0	0.00	10	3	23.08	-	-	-
TYRP1	0	genome.wustl.edu	37	9	12698600	12698600	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	9	12698600	12698600	G	A	SNP	TYRP1	ENST00000388918	human	ensembl	69_37n	+1	known	nonsense	c.858	p.W286*	1.000	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	112	0	0.00	38	8	17.39	-	-	-
ZBED1	0	genome.wustl.edu	37	X	2407843	2407843	+	Silent	SNP	C	C	T			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	X	2407843	2407843	C	T	SNP	ZBED1	ENST00000381218	human	ensembl	69_37n	-1	known	silent	c.918	p.P306	0.028	superfamily_RNaseH-like_dom	pfam_HATC,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	71	0	0.00	13	5	27.78	-	-	-
ZNF462	0	genome.wustl.edu	37	9	109687060	109687060	+	Silent	SNP	G	G	A			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	9	109687060	109687060	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	+1	known	silent	c.867	p.P289	0.936	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	47	0	0.00	17	4	19.05	-	-	-
ZNF532	0	genome.wustl.edu	37	18	56586060	56586060	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1IU-01A-11D-A14G-09	TCGA-E2-A1IU-11A-61D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7fcd5fda-8155-4b48-afb9-9e7958627113	48e5f4e0-7f51-47f6-a508-347ed3638a6d	18	56586060	56586060	G	C	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	+1	known	missense	c.541	p.G181R	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	36	0	0.00	15	6	28.57	-	-	-
