Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CEP57	0	genome.wustl.edu	37	11	95561001	95561002	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	95561001	95561002	-	T	INS	CEP57	ENST00000325542	human	ensembl	69_37n	+1	known	frame_shift_ins	c.937_938	p.M314fs	1.000:0.997	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037	86	0	0.00	38	22	36.67	-	-	-
DUSP19	0	genome.wustl.edu	37	2	183943684	183943684	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	183943684	183943684	T	C	SNP	DUSP19	ENST00000354221	human	ensembl	69_37n	+1	known	missense	c.23	p.I8T	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP19	HGNC	ENSG00000162999	78	0	0.00	34	13	27.66	-	-	-
FAM154A	0	genome.wustl.edu	37	9	19032889	19032889	+	Silent	SNP	G	G	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	19032889	19032889	G	A	SNP	FAM154A	ENST00000380534	human	ensembl	69_37n	-1	known	silent	c.18	p.I6	1.000	NULL	NULL	-	no_errors	FAM154A	HGNC	ENSG00000155875	46	0	0.00	26	5	16.13	-	-	-
HIST1H3B	0	genome.wustl.edu	37	6	26032071	26032071	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	6	26032071	26032071	C	G	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.218	p.R73P	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	75	0	0.00	64	8	10.96	-	-	-
IQGAP1	0	genome.wustl.edu	37	15	90969467	90969470	+	Frame_Shift_Del	DEL	AAAT	AAAT	-			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	AAAT	AAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	15	90969467	90969470	AAAT	-	DEL	IQGAP1	ENST00000268182	human	ensembl	69_37n	+1	known	frame_shift_del	c.281_284	p.K94fs	1.000:1.000:1.000:1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_Rsp5_WWP,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,smart_CH-domain,smart_WW_Rsp5_WWP,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_Rsp5_WWP,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	81	0	0.00	47	9	16.07	-	-	-
KCNJ14	0	genome.wustl.edu	37	19	48967521	48967521	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	48967521	48967521	C	G	SNP	KCNJ14	ENST00000342291	human	ensembl	69_37n	+1	known	missense	c.798	p.I266M	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	-	no_errors	KCNJ14	HGNC	ENSG00000182324	88	0	0.00	40	7	14.89	-	-	-
LAIR2	0	genome.wustl.edu	37	19	55019321	55019321	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	55019321	55019321	G	A	SNP	LAIR2	ENST00000301202	human	ensembl	69_37n	+1	known	missense	c.286	p.A96T	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	LAIR2	HGNC	ENSG00000167618	86	0	0.00	33	11	25.00	-	-	-
LLGL2	0	genome.wustl.edu	37	17	73566549	73566549	+	Silent	SNP	G	G	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	17	73566549	73566549	G	A	SNP	LLGL2	ENST00000392550	human	ensembl	69_37n	+1	known	silent	c.1995	p.R665	0.925	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350	23	0	0.00	14	5	25.00	-	-	-
LRRC37A2	0	genome.wustl.edu	37	17	44623731	44623731	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	17	44623731	44623731	C	T	SNP	LRRC37A2	ENST00000333412	human	ensembl	69_37n	+1	known	missense	c.3164	p.T1055I	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A2	HGNC	ENSG00000238083	11	0	0.00	12	5	29.41	-	-	-
LRRTM3	0	genome.wustl.edu	37	10	68857462	68857462	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	10	68857462	68857462	G	C	SNP	LRRTM3	ENST00000361320	human	ensembl	69_37n	+1	known	missense	c.1654	p.D552H	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739	80	0	0.00	51	7	12.07	-	-	-
LUC7L2	0	genome.wustl.edu	37	7	139097295	139097295	+	Splice_Site	SNP	A	A	G			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	139097295	139097295	A	G	SNP	LUC7L2	ENST00000541515	human	ensembl	69_37n	+1	known	splice_site	c.978-2	e9-2	1.000	-	-	-	no_errors	LUC7L2	HGNC	ENSG00000146963	120	0	0	55	42	43.3	-	-	-
MLL3	0	genome.wustl.edu	37	7	151859625	151859625	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	151859625	151859625	T	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.11037	p.E3679fs	0.004	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	125	0	0.00	91	20	17.86	-	-	-
NOSIP	0	genome.wustl.edu	37	19	50059664	50059664	+	Silent	SNP	G	G	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	50059664	50059664	G	A	SNP	NOSIP	ENST00000339093	human	ensembl	69_37n	-1	known	silent	c.744	p.L248	0.003	pirsf_Nitric_oxide_synth-interacting	pirsf_Nitric_oxide_synth-interacting	-	no_errors	NOSIP	HGNC	ENSG00000142546	30	0	0.00	16	5	23.81	-	-	-
PCDHGA3	0	genome.wustl.edu	37	5	140725783	140725783	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	5	140725783	140725783	C	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	+1	known	missense	c.2183	p.S728L	0.067	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	109	0	0.00	58	29	33.33	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	36	0	0.00	15	51	77.27	-	-	-
PLEKHG1	0	genome.wustl.edu	37	6	151152648	151152648	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	6	151152648	151152648	C	G	SNP	PLEKHG1	ENST00000358517	human	ensembl	69_37n	+1	known	missense	c.2401	p.Q801E	0.126	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	86	0	0.00	48	10	17.24	-	-	-
POLE2	0	genome.wustl.edu	37	14	50118020	50118020	+	Silent	SNP	A	A	T			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	14	50118020	50118020	A	T	SNP	POLE2	ENST00000216367	human	ensembl	69_37n	-1	known	silent	c.1287	p.R429	0.997	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_e_bsu	pfam_DNA_pol_alpha/epsilon_bsu,pfam_DNA_pol_e_bsu_N,pirsf_DNA_pol_e_bsu	-	no_errors	POLE2	HGNC	ENSG00000100479	71	0	0.00	79	63	44.37	-	-	-
RMI1	0	genome.wustl.edu	37	9	86616967	86616967	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	86616967	86616967	C	A	SNP	RMI1	ENST00000325875	human	ensembl	69_37n	+1	known	missense	c.1066	p.P356T	0.004	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966	57	0	0.00	33	4	10.81	-	-	-
RRP1	0	genome.wustl.edu	37	21	45222219	45222219	+	Silent	SNP	G	G	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	21	45222219	45222219	G	A	SNP	RRP1	ENST00000497547	human	ensembl	69_37n	+1	known	silent	c.1074	p.Q358	0.000	NULL	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214	73	0	0.00	36	6	14.29	-	-	-
SGK3	0	genome.wustl.edu	37	8	67716646	67716646	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	67716646	67716646	C	A	SNP	SGK3	ENST00000262211	human	ensembl	69_37n	+1	known	missense	c.217	p.P73T	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK3	HGNC	ENSG00000104205	77	0	0.00	32	4	11.11	-	-	-
SLC17A8	0	genome.wustl.edu	37	12	100795586	100795586	+	Silent	SNP	C	C	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	12	100795586	100795586	C	A	SNP	SLC17A8	ENST00000323346	human	ensembl	69_37n	+1	known	silent	c.708	p.P236	0.736	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520	191	0	0.00	121	39	24.22	-	-	-
SLC37A2	0	genome.wustl.edu	37	11	124949049	124949049	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	124949049	124949049	C	T	SNP	SLC37A2	ENST00000308074	human	ensembl	69_37n	+1	known	missense	c.356	p.S119L	0.044	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955	89	0	0.00	47	9	16.07	-	-	-
SPOPL	0	genome.wustl.edu	37	2	139316712	139316712	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	139316712	139316712	G	T	SNP	SPOPL	ENST00000280098	human	ensembl	69_37n	+1	known	missense	c.601	p.D201Y	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228	106	0	0.00	49	9	15.52	-	-	-
STAP2	0	genome.wustl.edu	37	19	4324465	4324465	+	Silent	SNP	G	G	C			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	4324465	4324465	G	C	SNP	STAP2	ENST00000314714	human	ensembl	69_37n	-1	known	silent	c.1272	p.L424	0.000	NULL	pfscan_SH2	-	no_errors	STAP2	HGNC	ENSG00000178078	21	0	0.00	28	6	17.65	-	-	-
TACC1	0	genome.wustl.edu	37	8	38693781	38693781	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	38693781	38693781	C	T	SNP	TACC1	ENST00000521866	human	ensembl	69_37n	+1	putative	missense	c.1088	p.P363L	0.223	pfam_TACC	pfam_TACC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TACC1	HGNC	ENSG00000147526	57	0	0.00	37	7	15.91	-	-	-
TTN	0	genome.wustl.edu	37	2	179640219	179640219	+	Silent	SNP	G	G	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	179640219	179640219	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.6372	p.I2124	0.997	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	69	0	0.00	43	10	18.87	-	-	-
UBE4A	0	genome.wustl.edu	37	11	118255404	118255404	+	Missense_Mutation	SNP	T	T	G			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	118255404	118255404	T	G	SNP	UBE4A	ENST00000431736	human	ensembl	69_37n	+1	known	missense	c.2273	p.I758S	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344	78	0	0.00	43	11	20.37	-	-	-
USP5	0	genome.wustl.edu	37	12	6972518	6972518	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	12	6972518	6972518	C	-	DEL	USP5	ENST00000229268	human	ensembl	69_37n	+1	known	frame_shift_del	c.1931	p.P645fs	1.000	pfam_Peptidase_C19,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	100	0	0.00	83	13	13.54	-	-	-
WDR60	0	genome.wustl.edu	37	7	158734770	158734770	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	158734770	158734770	A	G	SNP	WDR60	ENST00000407559	human	ensembl	69_37n	+1	known	missense	c.2933	p.N978S	0.004	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870	29	0	0.00	8	5	38.46	-	-	-
WIPF1	0	genome.wustl.edu	37	2	175446104	175446104	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	175446104	175446104	C	G	SNP	WIPF1	ENST00000272746	human	ensembl	69_37n	-1	known	missense	c.115	p.D39H	1.000	smart_WH2_dom,pfscan_WH2_dom	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935	171	0	0.00	117	18	13.33	-	-	-
ZFAT	0	genome.wustl.edu	37	8	135614282	135614282	+	Silent	SNP	C	C	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	135614282	135614282	C	A	SNP	ZFAT	ENST00000377838	human	ensembl	69_37n	-1	known	silent	c.1680	p.V560	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	29	0	0.00	7	7	50.00	-	-	-
ZNF347	0	genome.wustl.edu	37	19	53643755	53643755	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	53643755	53643755	G	A	SNP	ZNF347	ENST00000452676	human	ensembl	69_37n	-1	known	nonsense	c.2329	p.Q777*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	126	0	0.00	63	9	12.50	-	-	-
