Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM29	0	genome.wustl.edu	37	4	175897839	175897839	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	4	175897839	175897839	C	G	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	+1	known	missense	c.1163	p.T388R	0.000	pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	81	0	0.00	41	26	38.81	-	-	-
ASIC1	0	genome.wustl.edu	37	12	50452677	50452677	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	12	50452677	50452677	G	A	SNP	ASIC1	ENST00000228468	human	ensembl	69_37n	+1	known	missense	c.128	p.R43Q	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC1	HGNC	ENSG00000110881	36	0	0.00	25	12	32.43	-	-	-
CASP8	0	genome.wustl.edu	37	2	202141586	202141586	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	2	202141586	202141586	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	+1	known	missense	c.874	p.R292W	1.000	superfamily_DEATH-like,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	46	0	0.00	55	10	15.38	-	-	-
CCDC135	0	genome.wustl.edu	37	16	57760065	57760065	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	16	57760065	57760065	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	69_37n	+1	known	missense	c.1844	p.R615H	1.000	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	19	0	0.00	8	8	50.00	-	-	-
CLEC10A	0	genome.wustl.edu	37	17	6979420	6979420	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	17	6979420	6979420	C	G	SNP	CLEC10A	ENST00000254868	human	ensembl	69_37n	-1	known	missense	c.404	p.C135S	0.000	NULL	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC10A	HGNC	ENSG00000132514	29	0	0.00	21	5	19.23	-	-	-
CNTN3	0	genome.wustl.edu	37	3	74315673	74315673	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	3	74315673	74315673	T	-	DEL	CNTN3	ENST00000263665	human	ensembl	69_37n	-1	known	frame_shift_del	c.2945	p.D982fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN3	HGNC	ENSG00000113805	95	0	0.00	78	26	24.53	-	-	-
DHCR24	0	genome.wustl.edu	37	1	55331049	55331049	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	1	55331049	55331049	C	T	SNP	DHCR24	ENST00000371269	human	ensembl	69_37n	-1	known	missense	c.947	p.R316Q	0.001	NULL	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133	61	0	0.00	42	21	33.33	-	-	-
EYA3	0	genome.wustl.edu	37	1	28304975	28304975	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	1	28304975	28304975	G	C	SNP	EYA3	ENST00000373871	human	ensembl	69_37n	-1	known	missense	c.1551	p.S517R	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA3	HGNC	ENSG00000158161	83	0	0.00	88	23	20.72	-	-	-
F13A1	0	genome.wustl.edu	37	6	6182361	6182361	+	Missense_Mutation	SNP	A	A	T			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	6182361	6182361	A	T	SNP	F13A1	ENST00000264870	human	ensembl	69_37n	-1	known	missense	c.1319	p.L440H	0.125	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	67	0	0.00	41	8	16.33	-	-	-
FAM120A	0	genome.wustl.edu	37	9	96294650	96294650	+	Silent	SNP	A	A	G			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	9	96294650	96294650	A	G	SNP	FAM120A	ENST00000446420	human	ensembl	69_37n	+1	known	silent	c.1476	p.V492	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM120A	HGNC	ENSG00000048828	13	0	0.00	15	7	31.82	-	-	-
HDDC2	0	genome.wustl.edu	37	6	125598270	125598270	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	125598270	125598270	T	A	SNP	HDDC2	ENST00000398153	human	ensembl	69_37n	-1	known	missense	c.495	p.Q165H	0.980	NULL	pfam_HD_domain,smart_HD/PDEase_dom	-	no_errors	HDDC2	HGNC	ENSG00000111906	78	0	0.00	61	34	35.79	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56161678	56161678	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	5	56161678	56161678	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	missense	c.1175	p.Y392C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	51	0	0.00	41	22	34.92	-	-	-
MDFIC	0	genome.wustl.edu	37	7	114619630	114619631	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	7	114619630	114619631	-	A	INS	MDFIC	ENST00000393486	human	ensembl	69_37n	+1	known	frame_shift_ins	c.287_288	p.N98fs	1.000:1.000	NULL	NULL	-	no_errors	MDFIC	HGNC	ENSG00000135272	39	0	0.00	38	12	24.00	-	-	-
MED12	0	genome.wustl.edu	37	X	70356283	70356284	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	X	70356283	70356284	-	CA	INS	MED12	ENST00000333646	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5178_5179	p.L1729fs	1.000:1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	21	0	0.00	30	7	18.92	-	-	-
MUC4	0	genome.wustl.edu	37	3	195506775	195506775	+	Silent	SNP	G	G	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	3	195506775	195506775	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.11676	p.T3892	0.996	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	30	0	0.00	56	13	18.84	-	-	-
PRB2	0	genome.wustl.edu	37	12	11546742	11546742	+	Silent	SNP	T	T	C			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	12	11546742	11546742	T	C	SNP	PRB2	ENST00000389362	human	ensembl	69_37n	-1	known	silent	c.270	p.Q90	0.238	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335	15	0	0.00	73	20	21.28	-	-	-
SRRT	0	genome.wustl.edu	37	7	100485396	100485396	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	7	100485396	100485396	G	A	SNP	SRRT	ENST00000388793	human	ensembl	69_37n	+1	known	missense	c.2239	p.A747T	0.968	pfam_Arsenite-R_2	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	31	0	0.00	28	17	37.78	-	-	-
TAT	0	genome.wustl.edu	37	16	71603760	71603761	+	Frame_Shift_Ins	INS	-	-	AGGT			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	16	71603760	71603761	-	AGGT	INS	TAT	ENST00000355962	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1122_1121	p.M375fs	0.990:1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,prints_ACC_synthase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650	17	0	0.00	10	4	28.57	-	-	-
UFL1	0	genome.wustl.edu	37	6	96990799	96990799	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	96990799	96990799	G	A	SNP	UFL1	ENST00000369278	human	ensembl	69_37n	+1	known	missense	c.1309	p.G437R	1.000	NULL	pfam_E3_UFM1_ligase_1	-	no_errors	UFL1	HGNC	ENSG00000014123	23	0	0.00	29	19	39.58	-	-	-
VPS13C	0	genome.wustl.edu	37	15	62214879	62214879	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	15	62214879	62214879	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.6692	p.T2231M	0.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	45	0	0.00	59	7	10.61	-	-	-
WSCD2	0	genome.wustl.edu	37	12	108626636	108626636	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	12	108626636	108626636	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	+1	known	missense	c.1108	p.G370S	1.000	NULL	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	25	0	0.00	25	9	26.47	-	-	-
