Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C1orf65	0	genome.wustl.edu	37	1	223567541	223567541	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	1	223567541	223567541	G	A	SNP	C1orf65	ENST00000366875	human	ensembl	69_37n	+1	known	missense	c.724	p.V242I	0.000	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395	10	0	0.00	23	9	28.12	-	-	-
CCDC50	0	genome.wustl.edu	37	3	191047486	191047486	+	Missense_Mutation	SNP	A	A	T			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	3	191047486	191047486	A	T	SNP	CCDC50	ENST00000392456	human	ensembl	69_37n	+1	known	missense	c.23	p.Q8L	1.000	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492	16	0	0.00	10	6	37.50	-	-	-
CCPG1	0	genome.wustl.edu	37	15	55677882	55677882	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	15	55677882	55677882	T	A	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.91	p.T31S	0.756	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	51	0	0.00	41	15	26.79	-	-	-
CTNNAL1	0	genome.wustl.edu	37	9	111734985	111734985	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	9	111734985	111734985	T	A	SNP	CTNNAL1	ENST00000325551	human	ensembl	69_37n	-1	known	missense	c.1317	p.K439N	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326	79	0	0.00	64	28	30.43	-	-	-
DMP1	0	genome.wustl.edu	37	4	88584083	88584083	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	4	88584083	88584083	G	A	SNP	DMP1	ENST00000339673	human	ensembl	69_37n	+1	known	missense	c.1153	p.E385K	0.529	pfam_DMP1	pfam_DMP1	-	no_errors	DMP1	HGNC	ENSG00000152592	53	0	0.00	33	10	23.26	-	-	-
DNAH9	0	genome.wustl.edu	37	17	11603195	11603195	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	17	11603195	11603195	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	+1	known	missense	c.5020	p.G1674R	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	40	0	0.00	28	15	34.88	-	-	-
HSPA5	0	genome.wustl.edu	37	9	128001333	128001333	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	9	128001333	128001333	C	-	DEL	HSPA5	ENST00000324460	human	ensembl	69_37n	-1	known	frame_shift_del	c.883	p.A295fs	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574	62	0	0.00	50	15	22.39	-	-	-
LCA5	0	genome.wustl.edu	37	6	80222980	80222980	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	6	80222980	80222980	C	A	SNP	LCA5	ENST00000369846	human	ensembl	69_37n	-1	known	missense	c.669	p.K223N	1.000	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338	100	0	0.00	73	32	30.48	-	-	-
MAMDC4	0	genome.wustl.edu	37	9	139753216	139753216	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	9	139753216	139753216	G	A	SNP	MAMDC4	ENST00000445819	human	ensembl	69_37n	+1	known	missense	c.3104	p.R1035Q	0.149	pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom	-	no_errors	MAMDC4	HGNC	ENSG00000177943	28	0	0.00	16	6	27.27	-	-	-
MUM1	0	genome.wustl.edu	37	19	1362249	1362249	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	19	1362249	1362249	A	G	SNP	MUM1	ENST00000344663	human	ensembl	69_37n	+1	known	missense	c.1115	p.E372G	0.039	NULL	pfam_PWWP	-	no_errors	MUM1	HGNC	ENSG00000160953	39	0	0.00	21	8	27.59	-	-	-
MYO16	0	genome.wustl.edu	37	13	109704802	109704802	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	13	109704802	109704802	G	T	SNP	MYO16	ENST00000356711	human	ensembl	69_37n	+1	known	missense	c.2961	p.K987N	0.997	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	62	0	0.00	43	10	18.87	-	-	-
NDUFB9	0	genome.wustl.edu	37	8	125555378	125555378	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	8	125555378	125555378	A	G	SNP	NDUFB9	ENST00000276689	human	ensembl	69_37n	+1	known	missense	c.152	p.H51R	1.000	pfam_Complex1_LYR	pfam_Complex1_LYR	-	no_errors	NDUFB9	HGNC	ENSG00000147684	57	0	0.00	42	17	28.81	-	-	-
OR5V1	0	genome.wustl.edu	37	6	29323445	29323445	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	6	29323445	29323445	G	T	SNP	OR5V1	ENST00000377151	human	ensembl	69_37n	-1	known	nonsense	c.528	p.Y176*	0.559	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729	23	0	0.00	24	9	27.27	-	-	-
PCDHGA5	0	genome.wustl.edu	37	5	140744030	140744030	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	5	140744030	140744030	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	69_37n	+1	known	missense	c.133	p.V45I	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485	40	0	0.00	20	14	41.18	-	-	-
PLXNB3	0	genome.wustl.edu	37	X	153043072	153043072	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	X	153043072	153043072	C	A	SNP	PLXNB3	ENST00000538966	human	ensembl	69_37n	+1	known	missense	c.5259	p.D1753E	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	64	0	0.00	28	12	30.00	-	-	-
SLC2A12	0	genome.wustl.edu	37	6	134323224	134323225	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	6	134323224	134323225	-	A	INS	SLC2A12	ENST00000275230	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1611_1610	p.M537fs	1.000:1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411	80	0	0.00	51	25	32.89	-	-	-
SLIT2	0	genome.wustl.edu	37	4	20541090	20541090	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	4	20541090	20541090	G	T	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	+1	known	missense	c.1859	p.C620F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	148	0	0.00	80	29	26.61	-	-	-
UBE2D3	0	genome.wustl.edu	37	4	103730974	103730974	+	Missense_Mutation	SNP	A	A	C			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	4	103730974	103730974	A	C	SNP	UBE2D3	ENST00000357194	human	ensembl	69_37n	-1	known	missense	c.69	p.C23W	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D3	HGNC	ENSG00000109332	75	0	0.00	51	30	37.04	-	-	-
WNK1	0	genome.wustl.edu	37	12	970297	970297	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A24A-01A-11D-A167-09	TCGA-E9-A24A-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d11d3770-a4f4-4d15-94f4-149cca27d391	0702eb13-b159-471d-b602-092f1f173a80	12	970297	970297	A	-	DEL	WNK1	ENST00000530271	human	ensembl	69_37n	+1	known	frame_shift_del	c.1739	p.K583fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	33	0	0.00	22	4	15.38	-	-	-
