Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C2orf42	0	genome.wustl.edu	37	2	70377626	70377626	+	Silent	SNP	T	T	C			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	2	70377626	70377626	T	C	SNP	C2orf42	ENST00000264434	human	ensembl	69_37n	-1	known	silent	c.1587	p.Q529	0.062	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998	27	0	0.00	16	3	15.79	-	-	-
CACNA1A	0	genome.wustl.edu	37	19	13563741	13563741	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	19	13563741	13563741	G	T	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.488	p.S163Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	51	0	0.00	48	7	12.73	-	-	-
CCDC170	0	genome.wustl.edu	37	6	151857489	151857489	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	6	151857489	151857489	C	T	SNP	CCDC170	ENST00000367290	human	ensembl	69_37n	+1	known	missense	c.94	p.R32W	0.794	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262	29	0	0.00	44	8	15.38	-	-	-
CEACAMP10	0	genome.wustl.edu	37	19	43719516	43719517	+	RNA	INS	-	-	C			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	19	43719516	43719517	-	C	INS	CEACAMP10	ENST00000489959	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	CEACAMP10	HGNC	ENSG00000241104	13	0	0.00	6	5	45.45	-	-	-
DNAJC13	0	genome.wustl.edu	37	3	132192020	132192020	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	3	132192020	132192020	A	G	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	+1	known	missense	c.2240	p.K747R	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	70	0	0.00	58	10	14.49	-	-	-
FAM75A7	0	genome.wustl.edu	37	9	65506508	65506508	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	9	65506508	65506508	G	T	SNP	FAM75A7	ENST00000355045	human	ensembl	69_37n	-1	known	missense	c.1052	p.T351K	0.000	NULL	NULL	-	no_errors	FAM75A7	HGNC	ENSG00000234734	74	0	0.00	81	15	15.62	-	-	-
FBXO2	0	genome.wustl.edu	37	1	11708829	11708829	+	Silent	SNP	G	G	A			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	11708829	11708829	G	A	SNP	FBXO2	ENST00000354287	human	ensembl	69_37n	-1	known	silent	c.813	p.H271	0.999	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom_cyclin-like,superfamily_Galactose-bd-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like,pfscan_F-box-assoc_dom	-	no_errors	FBXO2	HGNC	ENSG00000116661	118	1	0.84	91	13	12.50	-	-	-
GLT6D1	0	genome.wustl.edu	37	9	138517918	138517918	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	9	138517918	138517918	C	T	SNP	GLT6D1	ENST00000371763	human	ensembl	69_37n	-1	known	missense	c.254	p.G85D	0.000	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007	63	0	0.00	69	10	12.66	-	-	-
HTT	0	genome.wustl.edu	37	4	3156030	3156030	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	4	3156030	3156030	C	G	SNP	HTT	ENST00000355072	human	ensembl	69_37n	+1	known	missense	c.3509	p.P1170R	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	21	0	0.00	32	6	15.79	-	-	-
IFT122	0	genome.wustl.edu	37	3	129225273	129225274	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	3	129225273	129225274	AG	-	DEL	IFT122	ENST00000296266	human	ensembl	69_37n	+1	known	frame_shift_del	c.2825_2826	p.E944fs	1.000:0.995	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	79	0	0.00	101	15	12.93	-	-	-
LRRC66	0	genome.wustl.edu	37	4	52883636	52883636	+	Missense_Mutation	SNP	A	A	C			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	4	52883636	52883636	A	C	SNP	LRRC66	ENST00000343457	human	ensembl	69_37n	-1	known	missense	c.144	p.F48L	0.037	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	16	0	0.00	27	6	18.18	-	-	-
NELL1	0	genome.wustl.edu	37	11	21305884	21305884	+	RNA	SNP	A	A	G			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	11	21305884	21305884	A	G	SNP	NELL1	ENST00000529218	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.202	-	-	-	no_errors	NELL1	HGNC	ENSG00000165973	50	0	0.00	60	12	16.67	-	-	-
PKLR	0	genome.wustl.edu	37	1	155265263	155265263	+	Missense_Mutation	SNP	T	T	G			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	155265263	155265263	T	G	SNP	PKLR	ENST00000342741	human	ensembl	69_37n	-1	known	missense	c.472	p.K158Q	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627	81	0	0.00	70	20	22.22	-	-	-
PPIF	0	genome.wustl.edu	37	10	81113525	81113527	+	In_Frame_Del	DEL	TAG	TAG	-			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	TAG	TAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	10	81113525	81113527	TAG	-	DEL	PPIF	ENST00000225174	human	ensembl	69_37n	+1	known	in_frame_del	c.551_553	p.IE184in_frame_delK	1.000:0.902:1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIF	HGNC	ENSG00000108179	41	0	0.00	25	3	10.71	-	-	-
SAFB2	0	genome.wustl.edu	37	19	5621373	5621373	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	19	5621373	5621373	A	G	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.221	p.I74T	0.579	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	41	0	0.00	53	9	14.52	-	-	-
TNS1	0	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	2	218712887	218712889	GCT	-	DEL	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	in_frame_del	c.1978_1976	p.Q659in_frame_del	1.000:1.000:0.994	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	32	0	0.00	27	4	12.90	-	-	-
XRN2	0	genome.wustl.edu	37	20	21314341	21314341	+	Splice_Site	SNP	G	G	A			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	20	21314341	21314341	G	A	SNP	XRN2	ENST00000377191	human	ensembl	69_37n	+1	known	splice_site	c.934-1	e11-1	1.000	-	-	-	no_errors	XRN2	HGNC	ENSG00000088930	49	0	0.00	70	14	16.67	-	-	-
ZBTB41	0	genome.wustl.edu	37	1	197144179	197144179	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	197144179	197144179	T	C	SNP	ZBTB41	ENST00000367405	human	ensembl	69_37n	-1	known	missense	c.1946	p.H649R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	45	0	0.00	58	8	12.12	-	-	-
ZNF687	0	genome.wustl.edu	37	1	151259169	151259169	+	Silent	SNP	C	C	T			TCGA-E9-A5FK-01A-11D-A27P-09	TCGA-E9-A5FK-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d5fb5ae8-cfb8-406c-a960-0507b27db129	3cd5ee75-fb7f-4adf-af2b-08064e99a220	1	151259169	151259169	C	T	SNP	ZNF687	ENST00000324048	human	ensembl	69_37n	+1	known	silent	c.402	p.L134	0.548	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373	49	0	0.00	42	5	10.64	-	-	-
