Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CACNA1A	0	genome.wustl.edu	37	19	13427968	13427968	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	19	13427968	13427968	T	C	SNP	CACNA1A	ENST00000360228	human	ensembl	69_37n	-1	known	missense	c.1513	p.I505V	0.996	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	34	0	0.00	29	8	21.62	-	-	-
CASP8	0	genome.wustl.edu	37	2	202131411	202131411	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	2	202131411	202131411	C	T	SNP	CASP8	ENST00000358485	human	ensembl	69_37n	+1	known	nonsense	c.379	p.R127*	0.742	pfam_DED,superfamily_DEATH-like,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012	36	0	0.00	33	5	13.16	-	-	-
CDYL2	0	genome.wustl.edu	37	16	80646646	80646646	+	Silent	SNP	C	C	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	16	80646646	80646646	C	A	SNP	CDYL2	ENST00000299564	human	ensembl	69_37n	-1	known	silent	c.1095	p.L365	1.000	pfam_Crotonase_core	pfam_Crotonase_core,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446	45	0	0.00	13	8	38.10	-	-	-
CYFIP1	0	genome.wustl.edu	37	15	22928474	22928474	+	Silent	SNP	T	T	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	15	22928474	22928474	T	A	SNP	CYFIP1	ENST00000313077	human	ensembl	69_37n	+1	known	silent	c.351	p.P117	0.920	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	43	0	0.00	36	8	18.18	-	-	-
CYTIP	0	genome.wustl.edu	37	2	158272428	158272428	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	2	158272428	158272428	C	T	SNP	CYTIP	ENST00000264192	human	ensembl	69_37n	-1	known	missense	c.841	p.D281N	0.997	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	CYTIP	HGNC	ENSG00000115165	46	0	0.00	25	8	24.24	-	-	-
DST	0	genome.wustl.edu	37	6	56458463	56458464	+	Frame_Shift_Ins	INS	-	-	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	6	56458463	56458464	-	A	INS	DST	ENST00000370754	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12631_12630	p.K4210fs	0.998:0.649	superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	38	0	0.00	21	15	41.67	-	-	-
FBXL2	0	genome.wustl.edu	37	3	33406169	33406169	+	Missense_Mutation	SNP	T	T	G			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	3	33406169	33406169	T	G	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	+1	known	missense	c.248	p.L83R	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL2	HGNC	ENSG00000153558	78	0	0.00	33	9	21.43	-	-	-
FMN2	0	genome.wustl.edu	37	1	240371075	240371075	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	1	240371075	240371075	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	+1	known	missense	c.2963	p.P988L	0.466	pfam_Formin_homology_1,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	12	0	0.00	19	8	29.63	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115725	8115728	+	Frame_Shift_Del	DEL	GAAG	GAAG	-			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	GAAG	GAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	10	8115725	8115728	GAAG	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_del	c.1074_1077	p.E360fs	1.000:1.000:1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	35	0	0.00	13	6	31.58	-	-	-
NPHP4	0	genome.wustl.edu	37	1	5967185	5967185	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	1	5967185	5967185	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	69_37n	-1	known	missense	c.1601	p.P534L	0.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697	23	0	0.00	14	7	33.33	-	-	-
PKD2L2	0	genome.wustl.edu	37	5	137226171	137226171	+	Silent	SNP	G	G	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	5	137226171	137226171	G	A	SNP	PKD2L2	ENST00000508883	human	ensembl	69_37n	+1	known	silent	c.33	p.G11	0.132	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795	52	0	0.00	50	19	27.54	-	-	-
SIGLEC8	0	genome.wustl.edu	37	19	51961617	51961619	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	19	51961617	51961619	GCA	-	DEL	SIGLEC8	ENST00000321424	human	ensembl	69_37n	-1	known	in_frame_del	c.25_23	p.L8in_frame_del	0.633:0.759:0.808	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC8	HGNC	ENSG00000105366	21	0	0.00	25	3	10.34	-	-	-
SRPR	0	genome.wustl.edu	37	11	126136761	126136761	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	11	126136761	126136761	G	A	SNP	SRPR	ENST00000332118	human	ensembl	69_37n	-1	known	missense	c.583	p.P195S	0.909	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_Signal_recog_part_SRP54_GTPase,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_Signal_recog_part_SRP54_GTPase	-	no_errors	SRPR	HGNC	ENSG00000182934	60	0	0.00	37	12	24.49	-	-	-
TBC1D19	0	genome.wustl.edu	37	4	26622298	26622298	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	4	26622298	26622298	G	A	SNP	TBC1D19	ENST00000264866	human	ensembl	69_37n	+1	known	missense	c.282	p.M94I	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D19	HGNC	ENSG00000109680	71	0	0.00	60	17	22.08	-	-	-
VSTM2B	0	genome.wustl.edu	37	19	30054758	30054758	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P3-01A-11D-A142-09	TCGA-EW-A1P3-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e783933d-1c24-4cd5-82b7-0d680f9c3c22	dafdbf8a-faaa-47a5-a9d3-9cabf520323e	19	30054758	30054758	G	A	SNP	VSTM2B	ENST00000335523	human	ensembl	69_37n	+1	known	missense	c.775	p.G259S	0.948	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	VSTM2B	HGNC	ENSG00000187135	82	0	0.00	79	35	30.70	-	-	-
