Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA10	0	genome.wustl.edu	37	17	67190077	67190077	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	67190077	67190077	T	C	SNP	ABCA10	ENST00000269081	human	ensembl	69_37n	-1	known	missense	c.1399	p.I467V	0.048	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	86	0	0.00	51	19	27.14	-	-	-
ANKRD30A	0	genome.wustl.edu	37	10	37419187	37419187	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	37419187	37419187	G	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	69_37n	+1	known	missense	c.223	p.D75N	0.300	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	89	0	0.00	28	15	34.88	-	-	-
AOC3	0	genome.wustl.edu	37	17	41004614	41004614	+	Silent	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	41004614	41004614	G	A	SNP	AOC3	ENST00000308423	human	ensembl	69_37n	+1	known	silent	c.1254	p.E418	0.773	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471	47	0	0.00	23	12	34.29	-	-	-
CACNA1B	0	genome.wustl.edu	37	9	140943768	140943768	+	Splice_Site	SNP	G	G	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	140943768	140943768	G	C	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	+1	known	splice_site	c.3713+1	e24+1	1.000	-	-	-	no_errors	CACNA1B	HGNC	ENSG00000148408	135	0	0.00	23	28	54.90	-	-	-
CCDC132	0	genome.wustl.edu	37	7	92926136	92926136	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	7	92926136	92926136	A	G	SNP	CCDC132	ENST00000305866	human	ensembl	69_37n	+1	known	missense	c.1250	p.D417G	1.000	NULL	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	103	0	0.00	33	12	26.67	-	-	-
CCR1	0	genome.wustl.edu	37	3	46245442	46245442	+	Silent	SNP	G	G	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	46245442	46245442	G	T	SNP	CCR1	ENST00000296140	human	ensembl	69_37n	-1	known	silent	c.363	p.I121	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CCR1,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR5,prints_P2_purnocptor,prints_NPY_rcpt,prints_ATII_rcpt	-	no_errors	CCR1	HGNC	ENSG00000163823	61	0	0.00	20	18	47.37	-	-	-
CDH15	0	genome.wustl.edu	37	16	89256775	89256775	+	Missense_Mutation	SNP	A	A	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	89256775	89256775	A	C	SNP	CDH15	ENST00000289746	human	ensembl	69_37n	+1	known	missense	c.1103	p.D368A	0.994	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910	21	0	0.00	8	9	52.94	-	-	-
CDH23	0	genome.wustl.edu	37	10	73494028	73494028	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	73494028	73494028	G	A	SNP	CDH23	ENST00000224721	human	ensembl	69_37n	+1	known	missense	c.4145	p.R1382H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	49	0	0.00	14	16	53.33	-	-	-
CES5A	0	genome.wustl.edu	37	16	55909072	55909072	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	55909072	55909072	G	A	SNP	CES5A	ENST00000290567	human	ensembl	69_37n	-1	known	missense	c.62	p.A21V	0.451	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398	72	0	0.00	39	11	22.00	-	-	-
CLCA1	0	genome.wustl.edu	37	1	86959277	86959277	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	86959277	86959277	G	T	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	+1	known	missense	c.1675	p.A559S	1.000	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	52	0	0.00	36	12	25.00	-	-	-
DENND5B	0	genome.wustl.edu	37	12	31576559	31576559	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	12	31576559	31576559	C	G	SNP	DENND5B	ENST00000306833	human	ensembl	69_37n	-1	known	missense	c.2547	p.E849D	1.000	pfam_Run,pfscan_Run	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_LipOase_LH2,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456	145	0	0.00	59	21	26.25	-	-	-
DGKD	0	genome.wustl.edu	37	2	234378033	234378033	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234378033	234378033	A	T	SNP	DGKD	ENST00000264057	human	ensembl	69_37n	+1	known	missense	c.3572	p.K1191M	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	39	0	0.00	19	11	36.67	-	-	-
DMXL2	0	genome.wustl.edu	37	15	51773279	51773279	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	15	51773279	51773279	T	C	SNP	DMXL2	ENST00000560891	human	ensembl	69_37n	-1	novel	missense	c.398	p.N133S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DMXL2	HGNC	ENSG00000104093	69	0	0.00	25	37	59.68	-	-	-
DYNC2H1	0	genome.wustl.edu	37	11	103114423	103114423	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	103114423	103114423	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	+1	known	missense	c.9842	p.S3281N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	113	0	0.00	50	13	20.63	-	-	-
FAM22B	0	genome.wustl.edu	37	10	81471479	81471479	+	Silent	SNP	C	C	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	81471479	81471479	C	A	SNP	FAM22B	ENST00000429828	human	ensembl	69_37n	+1	known	silent	c.1875	p.P625	0.022	NULL	NULL	-	no_errors	FAM22B	HGNC	ENSG00000188199	49	0	0.00	50	6	10.71	-	-	-
FAM75A1	0	genome.wustl.edu	37	9	39361134	39361134	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	39361134	39361134	G	T	SNP	FAM75A1	ENST00000377647	human	ensembl	69_37n	+1	known	missense	c.3372	p.R1124S	0.000	NULL	NULL	-	no_errors	FAM75A1	HGNC	ENSG00000204849	27	0	0.00	6	6	50.00	-	-	-
FYB	0	genome.wustl.edu	37	5	39127855	39127855	+	Missense_Mutation	SNP	T	T	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	5	39127855	39127855	T	A	SNP	FYB	ENST00000540520	human	ensembl	69_37n	-1	known	missense	c.1925	p.D642V	0.935	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074	136	0	0.00	69	28	28.87	-	-	-
GBF1	0	genome.wustl.edu	37	10	104130498	104130498	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	104130498	104130498	G	C	SNP	GBF1	ENST00000369983	human	ensembl	69_37n	+1	known	missense	c.3538	p.D1180H	1.000	NULL	pfam_Sec7,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	GBF1	HGNC	ENSG00000107862	93	0	0.00	42	5	10.64	-	-	-
HCFC1	0	genome.wustl.edu	37	X	153224852	153224852	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	X	153224852	153224852	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.1535	p.A512V	0.997	smart_Fibronectin_type3	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	65	0	0.00	36	5	11.90	-	-	-
IL37	0	genome.wustl.edu	37	2	113676172	113676172	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	113676172	113676172	A	G	SNP	IL37	ENST00000263326	human	ensembl	69_37n	+1	known	missense	c.443	p.E148G	0.004	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1	pfam_Interleukin_1,superfamily_Cytokine_IL1-like,smart_Interleukin_1,prints_Interleukin_1,prints_IL_rcpt_IL1RA	-	no_errors	IL37	HGNC	ENSG00000125571	52	0	0.00	34	11	24.44	-	-	-
JAK3	0	genome.wustl.edu	37	19	17948829	17948829	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	17948829	17948829	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.1613	p.G538D	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	75	0	0.00	38	12	24.00	-	-	-
KIAA1804	0	genome.wustl.edu	37	1	233518092	233518092	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	233518092	233518092	C	T	SNP	KIAA1804	ENST00000366624	human	ensembl	69_37n	+1	known	missense	c.2746	p.P916S	0.851	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	RP5-862P8.2	Clone_based_vega_gene	ENSG00000143674	50	0	0.00	26	4	13.33	-	-	-
KRTAP4-9	0	genome.wustl.edu	37	17	39262243	39262243	+	Silent	SNP	C	C	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	39262243	39262243	C	A	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	+1	known	silent	c.603	p.R201	0.394	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	130	0	0.00	38	19	33.33	-	-	-
LIX1	0	genome.wustl.edu	37	5	96430625	96430625	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	5	96430625	96430625	G	C	SNP	LIX1	ENST00000274382	human	ensembl	69_37n	-1	known	missense	c.676	p.R226G	0.989	NULL	NULL	-	no_errors	LIX1	HGNC	ENSG00000145721	72	0	0.00	16	17	51.52	-	-	-
MPP7	0	genome.wustl.edu	37	10	28378743	28378743	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	28378743	28378743	C	G	SNP	MPP7	ENST00000337532	human	ensembl	69_37n	-1	known	missense	c.980	p.S327T	1.000	superfamily_SH3_domain	pfam_Guanylate_kin,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,prints_SH3_domain,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	MPP7	HGNC	ENSG00000150054	121	0	0.00	39	18	31.58	-	-	-
MSL2	0	genome.wustl.edu	37	3	135870742	135870742	+	Silent	SNP	T	T	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	135870742	135870742	T	A	SNP	MSL2	ENST00000309993	human	ensembl	69_37n	-1	known	silent	c.981	p.S327	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	63	0	0.00	17	24	58.54	-	-	-
NMT2	0	genome.wustl.edu	37	10	15161504	15161504	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	15161504	15161504	C	G	SNP	NMT2	ENST00000378143	human	ensembl	69_37n	-1	known	missense	c.1101	p.K367N	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465	74	0	0.00	47	20	29.85	-	-	-
NOX3	0	genome.wustl.edu	37	6	155761166	155761166	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	6	155761166	155761166	C	A	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	missense	c.592	p.A198S	0.937	pfam_Fe3_Rdtase_TM_dom,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	66	0	0.00	35	14	28.57	-	-	-
OSCAR	0	genome.wustl.edu	37	19	54600388	54600388	+	Frame_Shift_Del	DEL	G	G	-			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	54600388	54600388	G	-	DEL	OSCAR	ENST00000356532	human	ensembl	69_37n	-1	known	frame_shift_del	c.146	p.P49fs	0.998	smart_Ig_sub	smart_Ig_sub	-	no_errors	OSCAR	HGNC	ENSG00000170909	33	0	0.00	8	2	20.00	-	-	-
PDILT	0	genome.wustl.edu	37	16	20373852	20373852	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	20373852	20373852	C	G	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.1290	p.L430F	0.438	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	141	0	0.00	54	11	16.92	-	-	-
PIK3R4	0	genome.wustl.edu	37	3	130447357	130447357	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	130447357	130447357	T	C	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.1757	p.N586S	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	77	0	0.00	20	22	52.38	-	-	-
PLEC	0	genome.wustl.edu	37	8	144991532	144991532	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	8	144991532	144991532	A	G	SNP	PLEC	ENST00000322810	human	ensembl	69_37n	-1	known	missense	c.12868	p.S4290P	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	34	0	0.00	9	6	40.00	-	-	-
POLR3A	0	genome.wustl.edu	37	10	79778932	79778932	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	10	79778932	79778932	G	T	SNP	POLR3A	ENST00000372371	human	ensembl	69_37n	-1	known	missense	c.1277	p.T426K	0.004	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606	140	0	0.00	50	30	37.04	-	-	-
RALGAPA1	0	genome.wustl.edu	37	14	36207803	36207803	+	Silent	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	14	36207803	36207803	G	A	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	silent	c.1503	p.N501	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	116	0	0.00	34	14	29.17	-	-	-
RFWD2	0	genome.wustl.edu	37	1	176012377	176012377	+	Nonsense_Mutation	SNP	A	A	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	176012377	176012377	A	T	SNP	RFWD2	ENST00000459744	human	ensembl	69_37n	-1	novel	nonsense	c.716	p.L239*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_start_codon:pseudogene:no_stop_codon	RFWD2	HGNC	ENSG00000143207	92	0	0.00	26	8	23.53	-	-	-
RPGRIP1L	0	genome.wustl.edu	37	16	53725984	53725984	+	Frame_Shift_Del	DEL	T	T	-			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	53725984	53725984	T	-	DEL	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	frame_shift_del	c.523	p.R175fs	0.985	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	146	0	0.00	90	25	21.01	-	-	-
RYR2	0	genome.wustl.edu	37	1	237753140	237753140	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	237753140	237753140	A	G	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	+1	known	missense	c.3640	p.N1214D	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	70	0	0.00	40	18	31.03	-	-	-
SEC16A	0	genome.wustl.edu	37	9	139341757	139341757	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	9	139341757	139341757	G	A	SNP	SEC16A	ENST00000313050	human	ensembl	69_37n	-1	known	missense	c.6619	p.P2207S	0.003	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	28	0	0.00	6	10	62.50	-	-	-
SHANK1	0	genome.wustl.edu	37	19	51217448	51217448	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	51217448	51217448	C	A	SNP	SHANK1	ENST00000391814	human	ensembl	69_37n	-1	known	missense	c.631	p.D211Y	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681	57	0	0.00	10	29	74.36	-	-	-
SIGLEC15	0	genome.wustl.edu	37	18	43422081	43422081	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	18	43422081	43422081	C	T	SNP	SIGLEC15	ENST00000389474	human	ensembl	69_37n	+1	known	nonsense	c.916	p.Q306*	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC15	HGNC	ENSG00000197046	37	0	0.00	32	9	21.95	-	-	-
STAT6	0	genome.wustl.edu	37	12	57493104	57493104	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	12	57493104	57493104	C	A	SNP	STAT6	ENST00000300134	human	ensembl	69_37n	-1	known	missense	c.1864	p.D622Y	1.000	smart_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888	58	0	0.00	15	4	21.05	-	-	-
SWSAP1	0	genome.wustl.edu	37	19	11486428	11486428	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	11486428	11486428	G	C	SNP	SWSAP1	ENST00000312423	human	ensembl	69_37n	+1	known	missense	c.426	p.Q142H	0.018	NULL	NULL	-	no_errors	SWSAP1	HGNC	ENSG00000173928	41	0	0.00	26	4	13.33	-	-	-
TCF7L1	0	genome.wustl.edu	37	2	85529633	85529633	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	85529633	85529633	C	A	SNP	TCF7L1	ENST00000282111	human	ensembl	69_37n	+1	known	missense	c.552	p.H184Q	0.997	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L1	HGNC	ENSG00000152284	48	0	0.00	27	8	22.86	-	-	-
TGM1	0	genome.wustl.edu	37	14	24724436	24724436	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	14	24724436	24724436	C	G	SNP	TGM1	ENST00000206765	human	ensembl	69_37n	-1	known	missense	c.1669	p.V557L	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	42	0	0.00	17	12	41.38	-	-	-
TNN	0	genome.wustl.edu	37	1	175097249	175097249	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	1	175097249	175097249	G	A	SNP	TNN	ENST00000239462	human	ensembl	69_37n	+1	known	missense	c.3127	p.A1043T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332	38	0	0.00	10	13	56.52	-	-	-
TNS3	0	genome.wustl.edu	37	7	47481602	47481602	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	7	47481602	47481602	G	A	SNP	TNS3	ENST00000457718	human	ensembl	69_37n	-1	putative	missense	c.286	p.R96W	0.001	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Tyr_Pase_cat,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_stop_codon:bad_bp_length_for_coding_region	TNS3	HGNC	ENSG00000136205	8	0	0.00	1	5	83.33	-	-	-
TP53	0	genome.wustl.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	17	7578394	7578394	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.536	p.H179R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	46	0	0.00	11	17	60.71	-	-	-
TPSAB1	0	genome.wustl.edu	37	16	1291454	1291454	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	1291454	1291454	G	A	SNP	TPSAB1	ENST00000562675	human	ensembl	69_37n	+1	known	missense	c.253	p.A85T	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236	19	0	0.00	11	4	26.67	-	-	-
TRIM64DP	0	genome.wustl.edu	37	11	89515411	89515411	+	RNA	SNP	G	G	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	89515411	89515411	G	T	SNP	TRIM64DP	ENST00000532821	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.938	-	-	-	no_errors	TRIM64DP	HGNC	ENSG00000254751	87	0	0.00	32	12	27.27	-	-	-
TRPM5	0	genome.wustl.edu	37	11	2432879	2432879	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	11	2432879	2432879	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2599	p.V867M	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	40	0	0.00	27	4	12.90	-	-	-
TRPM8	0	genome.wustl.edu	37	2	234871945	234871945	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234871945	234871945	G	A	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	+1	known	missense	c.1673	p.R558Q	0.999	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	100	0	0.00	48	13	21.31	-	-	-
TXK	0	genome.wustl.edu	37	4	48115241	48115241	+	Silent	SNP	A	A	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	4	48115241	48115241	A	G	SNP	TXK	ENST00000264316	human	ensembl	69_37n	-1	known	silent	c.157	p.L53	0.000	superfamily_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966	116	0	0.00	38	11	22.45	-	-	-
U2SURP	0	genome.wustl.edu	37	3	142753807	142753807	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	3	142753807	142753807	A	G	SNP	U2SURP	ENST00000319822	human	ensembl	69_37n	+1	known	missense	c.1931	p.E644G	1.000	superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	pfam_Surp,pfam_RRM_dom,superfamily_Surp,superfamily_ENTH_VHS,smart_RRM_dom,smart_Surp,smart_RNA_polymerase_II_lsu_CTD,pfscan_Surp,pfscan_RRM_dom	-	no_errors	U2SURP	HGNC	ENSG00000163714	83	0	0.00	65	28	30.11	-	-	-
UBN1	0	genome.wustl.edu	37	16	4924574	4924574	+	Missense_Mutation	SNP	T	T	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	16	4924574	4924574	T	G	SNP	UBN1	ENST00000586716	human	ensembl	69_37n	+1	novel	missense	c.542	p.L181R	0.857	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBN1	HGNC	ENSG00000118900	39	0	0.00	27	14	34.15	-	-	-
UGT1A8	0	genome.wustl.edu	37	2	234526969	234526969	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	2	234526969	234526969	A	G	SNP	UGT1A8	ENST00000373450	human	ensembl	69_37n	+1	known	missense	c.616	p.R206G	0.999	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366	127	0	0.00	50	17	25.37	-	-	-
VPS13C	0	genome.wustl.edu	37	15	62211583	62211583	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	15	62211583	62211583	C	G	SNP	VPS13C	ENST00000261517	human	ensembl	69_37n	-1	known	missense	c.7543	p.V2515L	1.000	NULL	pfam_VPSAP,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	76	0	0.00	26	23	46.94	-	-	-
YWHAH	0	genome.wustl.edu	37	22	32352686	32352686	+	Silent	SNP	T	T	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	22	32352686	32352686	T	C	SNP	YWHAH	ENST00000248975	human	ensembl	69_37n	+1	known	silent	c.648	p.Y216	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAH	HGNC	ENSG00000128245	39	0	0.00	17	9	34.62	-	-	-
ZC2HC1A	0	genome.wustl.edu	37	8	79598812	79598814	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	8	79598812	79598814	TCC	-	DEL	ZC2HC1A	ENST00000263849	human	ensembl	69_37n	+1	known	in_frame_del	c.321_323	p.P111in_frame_del	0.987:1.000:1.000	NULL	NULL	-	no_errors	ZC2HC1A	HGNC	ENSG00000104427	42	0	0.00	18	2	10.00	-	-	-
ZFYVE28	0	genome.wustl.edu	37	4	2341251	2341251	+	Silent	SNP	C	C	G			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	4	2341251	2341251	C	G	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	silent	c.450	p.L150	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	37	0	0.00	9	4	30.77	-	-	-
ZNF260	0	genome.wustl.edu	37	19	37006039	37006039	+	Silent	SNP	T	T	C			TCGA-EW-A1P4-01A-21D-A142-09	TCGA-EW-A1P4-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	204e4ef3-e6b8-469f-9024-56c6f6f07afd	99c296d2-1d17-47c0-b036-239170e2ff1a	19	37006039	37006039	T	C	SNP	ZNF260	ENST00000523638	human	ensembl	69_37n	-1	known	silent	c.102	p.K34	0.687	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF260	HGNC	ENSG00000254004	56	0	0.00	34	8	19.05	-	-	-
