Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANP32AP1	0	genome.wustl.edu	37	15	35530020	35530020	+	RNA	SNP	A	A	T			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	15	35530020	35530020	A	T	SNP	ANP32AP1	ENST00000560832	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ANP32AP1	HGNC	ENSG00000259516	280	0	0.00	208	26	11.11	-	-	-
ARHGEF7	0	genome.wustl.edu	37	13	111927099	111927099	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	13	111927099	111927099	G	A	SNP	ARHGEF7	ENST00000375741	human	ensembl	69_37n	+1	known	missense	c.1297	p.D433N	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,prints_SH3_domain,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606	166	0	0.00	104	57	35.40	-	-	-
ATP2B3	0	genome.wustl.edu	37	X	152825329	152825329	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	X	152825329	152825329	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	69_37n	+1	known	missense	c.2768	p.R923H	0.785	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B3	HGNC	ENSG00000067842	82	0	0.00	69	16	18.82	-	-	-
AZI2	0	genome.wustl.edu	37	3	28381938	28381938	+	Frame_Shift_Del	DEL	T	T	-			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	28381938	28381938	T	-	DEL	AZI2	ENST00000479665	human	ensembl	69_37n	-1	known	frame_shift_del	c.171	p.E58fs	0.998	NULL	NULL	-	no_errors	AZI2	HGNC	ENSG00000163512	118	0	0.00	108	14	11.38	-	-	-
C1orf114	0	genome.wustl.edu	37	1	169391472	169391472	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	169391472	169391472	G	C	SNP	C1orf114	ENST00000367806	human	ensembl	69_37n	-1	known	missense	c.197	p.S66C	0.303	NULL	NULL	-	no_errors	C1orf114	HGNC	ENSG00000117477	95	0	0.00	95	14	12.84	-	-	-
C3orf30	0	genome.wustl.edu	37	3	118865255	118865255	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	118865255	118865255	C	T	SNP	C3orf30	ENST00000460150	human	ensembl	69_37n	+1	putative	missense	c.109	p.R37W	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C3orf30	HGNC	ENSG00000163424	34	0	0.00	18	4	18.18	-	-	-
CCDC168	0	genome.wustl.edu	37	13	103385602	103385602	+	Silent	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	13	103385602	103385602	G	A	SNP	CCDC168	ENST00000322527	human	ensembl	69_37n	-1	known	silent	c.3558	p.I1186	0.000	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820	138	0	0.00	113	16	12.40	-	-	-
CYP4F30P	0	genome.wustl.edu	37	2	131438159	131438159	+	RNA	DEL	A	A	-			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	2	131438159	131438159	A	-	DEL	CYP4F30P	ENST00000397485	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.102	-	-	-	no_errors	CYP4F30P	HGNC	ENSG00000214081	8	0	0.00	6	3	33.33	-	-	-
DDX21	0	genome.wustl.edu	37	10	70723131	70723131	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	10	70723131	70723131	G	A	SNP	DDX21	ENST00000354185	human	ensembl	69_37n	+1	known	missense	c.692	p.R231Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	106	0	0.00	73	9	10.98	-	-	-
DEF6	0	genome.wustl.edu	37	6	35277530	35277530	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	6	35277530	35277530	C	T	SNP	DEF6	ENST00000444278	human	ensembl	69_37n	+1	known	missense	c.16	p.R6W	0.753	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	DEF6	HGNC	ENSG00000023892	65	0	0.00	61	24	28.24	-	-	-
DENND4B	0	genome.wustl.edu	37	1	153912704	153912704	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	153912704	153912704	G	C	SNP	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	missense	c.1531	p.R511G	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	88	0	0.00	63	9	12.50	-	-	-
DISP2	0	genome.wustl.edu	37	15	40661552	40661552	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	15	40661552	40661552	C	T	SNP	DISP2	ENST00000267889	human	ensembl	69_37n	+1	known	missense	c.3239	p.A1080V	1.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323	36	0	0.00	17	5	22.73	-	-	-
DKC1	0	genome.wustl.edu	37	X	153996568	153996568	+	Silent	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	X	153996568	153996568	G	A	SNP	DKC1	ENST00000437719	human	ensembl	69_37n	+1	novel	silent	c.621	p.V207	0.000	superfamily_PsdUridine_synth_cat_dom,tigrfam_Pseudouridine_synthase-related	pfam_Dyskerin-like,pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_Pseudouridine_synthase-related	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	DKC1	HGNC	ENSG00000130826	257	0	0.00	248	33	11.70	-	-	-
EMR2	0	genome.wustl.edu	37	19	14865766	14865766	+	Nonsense_Mutation	SNP	C	C	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	19	14865766	14865766	C	A	SNP	EMR2	ENST00000392964	human	ensembl	69_37n	-1	known	nonsense	c.583	p.G195*	0.999	NULL	prints_GPCR_2_CD97	-	no_errors	EMR2	HGNC	ENSG00000127507	61	0	0.00	30	11	26.83	-	-	-
GLB1	0	genome.wustl.edu	37	3	33055654	33055654	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	33055654	33055654	G	A	SNP	GLB1	ENST00000445488	human	ensembl	69_37n	-1	known	missense	c.1772	p.S591L	0.011	superfamily_Galactose-bd-like	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266	104	0	0.00	61	41	40.20	-	-	-
ING1	0	genome.wustl.edu	37	13	111366554	111366554	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	13	111366554	111366554	C	G	SNP	ING1	ENST00000333219	human	ensembl	69_37n	+1	known	missense	c.58	p.L20V	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	31	0	0.00	23	60	72.29	-	-	-
ING1	0	genome.wustl.edu	37	13	111368180	111368180	+	Silent	SNP	C	C	G			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	13	111368180	111368180	C	G	SNP	ING1	ENST00000375774	human	ensembl	69_37n	+1	known	silent	c.390	p.L130	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	14	0	0.00	20	58	74.36	-	-	-
KLHL26	0	genome.wustl.edu	37	19	18779780	18779780	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	19	18779780	18779780	G	A	SNP	KLHL26	ENST00000300976	human	ensembl	69_37n	+1	known	missense	c.1573	p.D525N	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487	23	0	0.00	9	5	35.71	-	-	-
LRP6	0	genome.wustl.edu	37	12	12397448	12397448	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	12	12397448	12397448	T	C	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.197	p.Y66C	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	126	0	0.00	84	19	18.27	-	-	-
MARCO	0	genome.wustl.edu	37	2	119750776	119750776	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	2	119750776	119750776	G	A	SNP	MARCO	ENST00000327097	human	ensembl	69_37n	+1	known	nonsense	c.1329	p.W443*	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	pfam_Collagen,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	MARCO	HGNC	ENSG00000019169	112	0	0.00	102	13	11.30	-	-	-
OGG1	0	genome.wustl.edu	37	3	9798276	9798276	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	9798276	9798276	G	A	SNP	OGG1	ENST00000302036	human	ensembl	69_37n	+1	known	missense	c.869	p.G290E	0.129	superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	-	no_errors	OGG1	HGNC	ENSG00000114026	42	0	0.00	34	16	32.00	-	-	-
OR10G4	0	genome.wustl.edu	37	11	123886964	123886964	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	11	123886964	123886964	G	A	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	+1	known	missense	c.683	p.R228H	0.008	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	329	0	0.00	178	45	20.18	-	-	-
OR4D6	0	genome.wustl.edu	37	11	59225149	59225149	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	11	59225149	59225149	C	A	SNP	OR4D6	ENST00000300127	human	ensembl	69_37n	+1	known	missense	c.716	p.T239K	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884	92	0	0.00	68	10	12.82	-	-	-
PTPRF	0	genome.wustl.edu	37	1	44086512	44086512	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	44086512	44086512	G	C	SNP	PTPRF	ENST00000359947	human	ensembl	69_37n	+1	known	missense	c.5368	p.G1790R	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949	72	0	0.00	50	10	16.67	-	-	-
RASIP1	0	genome.wustl.edu	37	19	49230688	49230688	+	Splice_Site	SNP	C	C	T			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	19	49230688	49230688	C	T	SNP	RASIP1	ENST00000222145	human	ensembl	69_37n	-1	known	splice_site	c.1834-1	e5-1	1.000	-	-	-	no_errors	RASIP1	HGNC	ENSG00000105538	87	0	0.00	46	15	24.59	-	-	-
RIOK1	0	genome.wustl.edu	37	6	7393371	7393371	+	Silent	SNP	C	C	T			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	6	7393371	7393371	C	T	SNP	RIOK1	ENST00000379834	human	ensembl	69_37n	+1	known	silent	c.111	p.D37	0.000	pirsf_Ser/Thr_kinase_Rio1	pfam_RIO-like_kinase,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	-	no_errors	RIOK1	HGNC	ENSG00000124784	103	0	0.00	128	18	12.33	-	-	-
RXRG	0	genome.wustl.edu	37	1	165380213	165380213	+	Silent	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	165380213	165380213	G	A	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	silent	c.756	p.S252	0.999	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	112	0	0.00	116	13	10.08	-	-	-
SETD2	0	genome.wustl.edu	37	3	47163294	47163294	+	Missense_Mutation	SNP	A	A	C			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	3	47163294	47163294	A	C	SNP	SETD2	ENST00000445387	human	ensembl	69_37n	-1	known	missense	c.1732	p.F578V	0.134	NULL	pfam_SET_dom,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SETD2	HGNC	ENSG00000181555	93	0	0.00	52	11	17.46	-	-	-
SLC24A4	0	genome.wustl.edu	37	14	92922791	92922791	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	14	92922791	92922791	C	T	SNP	SLC24A4	ENST00000532405	human	ensembl	69_37n	+1	known	missense	c.1094	p.P365L	0.981	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A4	HGNC	ENSG00000140090	50	0	0.00	34	5	12.82	-	-	-
SNAP25	0	genome.wustl.edu	37	20	10279990	10279990	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	20	10279990	10279990	G	A	SNP	SNAP25	ENST00000254976	human	ensembl	69_37n	+1	known	missense	c.482	p.R161H	1.000	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfam_SNAP-25,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP25	HGNC	ENSG00000132639	57	0	0.00	36	6	14.29	-	-	-
SPINK5	0	genome.wustl.edu	37	5	147477448	147477448	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	5	147477448	147477448	C	G	SNP	SPINK5	ENST00000359874	human	ensembl	69_37n	+1	known	missense	c.901	p.Q301E	0.026	smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	-	no_errors	SPINK5	HGNC	ENSG00000133710	108	0	0.00	73	21	22.34	-	-	-
THSD7B	0	genome.wustl.edu	37	2	138000041	138000041	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	2	138000041	138000041	C	G	SNP	THSD7B	ENST00000272643	human	ensembl	69_37n	+1	known	missense	c.2165	p.T722S	0.217	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229	172	0	0.00	86	20	18.87	-	-	-
TP53	0	genome.wustl.edu	37	17	7577610	7577610	+	Splice_Site	SNP	T	T	C			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	17	7577610	7577610	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.673-2	e6-2	0.999	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	58	0	0.00	33	11	25.00	-	-	-
ZNF496	0	genome.wustl.edu	37	1	247464502	247464502	+	Silent	SNP	C	C	A			TCGA-GM-A2DF-01A-11D-A17W-09	TCGA-GM-A2DF-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7456abd5-303e-4e6f-bf4e-47efefc7310f	12ca0b20-2f39-43df-a572-28f4069502de	1	247464502	247464502	C	A	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	silent	c.1191	p.G397	0.709	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	49	0	0.00	31	6	16.22	-	-	-
