Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACSBG1	0	genome.wustl.edu	37	15	78474920	78474920	+	Missense_Mutation	SNP	T	T	C			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	15	78474920	78474920	T	C	SNP	ACSBG1	ENST00000258873	human	ensembl	69_37n	-1	known	missense	c.782	p.E261G	0.997	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740	57	0	0.00	40	26	39.39	-	-	-
ACTN4	0	genome.wustl.edu	37	19	39220426	39220426	+	RNA	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	19	39220426	39220426	G	A	SNP	ACTN4	ENST00000497637	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.086	-	-	-	no_errors	ACTN4	HGNC	ENSG00000130402	41	0	0.00	21	15	41.67	-	-	-
ARHGDIA	0	genome.wustl.edu	37	17	79827427	79827427	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	79827427	79827427	C	T	SNP	ARHGDIA	ENST00000269321	human	ensembl	69_37n	-1	known	missense	c.265	p.D89N	1.000	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIA	HGNC	ENSG00000141522	22	0	0.00	8	8	50.00	-	-	-
BRWD3	0	genome.wustl.edu	37	X	79947371	79947371	+	Silent	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	79947371	79947371	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	69_37n	-1	known	silent	c.3432	p.D1144	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	72	0	0.00	48	19	28.36	-	-	-
C6orf136	0	genome.wustl.edu	37	6	30615302	30615302	+	Silent	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	6	30615302	30615302	G	A	SNP	C6orf136	ENST00000293604	human	ensembl	69_37n	+1	known	silent	c.294	p.L98	0.000	NULL	pfam_DUF2358	-	no_errors	C6orf136	HGNC	ENSG00000204564	74	0	0.00	40	22	35.48	-	-	-
CAMSAP3	0	genome.wustl.edu	37	19	7676700	7676700	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	19	7676700	7676700	G	A	SNP	CAMSAP3	ENST00000446248	human	ensembl	69_37n	+1	known	missense	c.1402	p.A468T	0.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826	28	0	0.00	26	7	21.21	-	-	-
CANT1	0	genome.wustl.edu	37	17	76989950	76989950	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	76989950	76989950	G	T	SNP	CANT1	ENST00000302345	human	ensembl	69_37n	-1	known	missense	c.888	p.F296L	1.000	pfam_Apyrase,superfamily_Apyrase	pfam_Apyrase,superfamily_Apyrase	-	no_errors	CANT1	HGNC	ENSG00000171302	30	0	0.00	10	14	58.33	-	-	-
CEP19	0	genome.wustl.edu	37	3	196434521	196434523	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	3	196434521	196434523	CTT	-	DEL	CEP19	ENST00000409690	human	ensembl	69_37n	-1	known	in_frame_del	c.405_403	p.K135in_frame_del	0.995:1.000:1.000	NULL	NULL	-	no_errors	CEP19	HGNC	ENSG00000174007	74	0	0.00	56	9	13.64	-	-	-
COL28A1	0	genome.wustl.edu	37	7	7561589	7561589	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	7	7561589	7561589	C	A	SNP	COL28A1	ENST00000399429	human	ensembl	69_37n	-1	known	nonsense	c.706	p.E236*	0.997	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	47	0	0.00	30	19	38.00	-	-	-
CSMD2	0	genome.wustl.edu	37	1	34025030	34025030	+	Silent	SNP	A	A	G			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	1	34025030	34025030	A	G	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.8424	p.T2808	0.998	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	44	0	0.00	26	5	16.13	-	-	-
DHX8	0	genome.wustl.edu	37	17	41570357	41570357	+	Missense_Mutation	SNP	A	A	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	41570357	41570357	A	T	SNP	DHX8	ENST00000262415	human	ensembl	69_37n	+1	known	missense	c.812	p.K271I	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_NA-bd_OB-fold-like,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596	39	0	0.00	23	22	48.89	-	-	-
GAPVD1	0	genome.wustl.edu	37	9	128061327	128061327	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	9	128061327	128061327	C	T	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	+1	known	missense	c.127	p.R43C	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	19	0	0.00	9	6	40.00	-	-	-
GUSBP1	0	genome.wustl.edu	37	5	21459636	21459636	+	RNA	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	21459636	21459636	C	T	SNP	GUSBP1	ENST00000508973	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-823P9.1	Clone_based_vega_gene	ENSG00000183666	126	0	0.00	106	64	37.65	-	-	-
KDM5C	0	genome.wustl.edu	37	X	53223508	53223509	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	53223508	53223509	CT	-	DEL	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	frame_shift_del	c.3851_3850	p.R1284fs	1.000:1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	99	0	0.00	72	31	30.10	-	-	-
KIAA2022	0	genome.wustl.edu	37	X	73961059	73961059	+	Missense_Mutation	SNP	T	T	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	73961059	73961059	T	A	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.3333	p.K1111N	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	84	0	0.00	49	26	34.67	-	-	-
KRT42P	0	genome.wustl.edu	37	17	39784163	39784163	+	RNA	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	39784163	39784163	C	T	SNP	KRT42P	ENST00000398469	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	KRT42P	HGNC	ENSG00000214514	92	0	0.00	60	39	39.39	-	-	-
KRTAP20-2	0	genome.wustl.edu	37	21	32007597	32007597	+	Silent	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	21	32007597	32007597	C	T	SNP	KRTAP20-2	ENST00000330798	human	ensembl	69_37n	+1	known	silent	c.15	p.S5	0.035	pfam_KRTAP	pfam_KRTAP	-	no_errors	KRTAP20-2	HGNC	ENSG00000184032	144	0	0.00	113	36	24.16	-	-	-
LATS1	0	genome.wustl.edu	37	6	150039148	150039148	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	6	150039148	150039148	G	A	SNP	LATS1	ENST00000458696	human	ensembl	69_37n	-1	putative	missense	c.23	p.S8L	0.955	NULL	superfamily_UBA-like	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	LATS1	HGNC	ENSG00000131023	9	0	0.00	7	6	46.15	-	-	-
LRRN2	0	genome.wustl.edu	37	1	204588367	204588368	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	1	204588367	204588368	CC	-	DEL	LRRN2	ENST00000367175	human	ensembl	69_37n	-1	known	frame_shift_del	c.754_753	p.V252fs	0.996:0.013	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRN2	HGNC	ENSG00000170382	42	0	0.00	70	15	17.65	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56168489	56168490	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	56168489	56168490	AT	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.1445_1446	p.N482fs	1.000:0.994	pfscan_Znf_RING	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	57	0	0.00	33	18	35.29	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56181807	56181807	+	Nonsense_Mutation	SNP	C	C	G			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	56181807	56181807	C	G	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	nonsense	c.4031	p.S1344*	0.996	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	58	0	0.00	46	22	32.35	-	-	-
MLL5	0	genome.wustl.edu	37	7	104654714	104654714	+	RNA	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	7	104654714	104654714	C	T	SNP	MLL5	ENST00000480368	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	MLL5	HGNC	ENSG00000005483	109	0	0.00	58	37	38.95	-	-	-
MPHOSPH8	0	genome.wustl.edu	37	13	20216401	20216401	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	13	20216401	20216401	G	T	SNP	MPHOSPH8	ENST00000414242	human	ensembl	69_37n	+1	known	missense	c.360	p.K120N	0.719	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199	39	0	0.00	13	3	18.75	-	-	-
NADKD1	0	genome.wustl.edu	37	5	36195081	36195081	+	RNA	DEL	T	T	-			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	36195081	36195081	T	-	DEL	NADKD1	ENST00000511613	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NADKD1	HGNC	ENSG00000152620	17	0	0.00	8	5	38.46	-	-	-
NUP85	0	genome.wustl.edu	37	17	73201834	73201834	+	RNA	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	73201834	73201834	C	T	SNP	NUP85	ENST00000449421	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP85	HGNC	ENSG00000125450	71	0	0.00	63	49	43.75	-	-	-
OTP	0	genome.wustl.edu	37	5	76933023	76933023	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	76933023	76933023	G	A	SNP	OTP	ENST00000306422	human	ensembl	69_37n	-1	known	missense	c.70	p.R24W	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,prints_HTH_motif,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	OTP	HGNC	ENSG00000171540	69	0	0.00	45	25	35.71	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	50	0	0.00	25	34	57.63	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	85	0	0.00	49	45	47.37	-	-	-
PRSS53	0	genome.wustl.edu	37	16	31098175	31098175	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	31098175	31098175	G	A	SNP	PRSS53	ENST00000280606	human	ensembl	69_37n	-1	known	missense	c.287	p.S96F	1.000	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	56	0	0.00	46	10	17.86	-	-	-
PTPRM	0	genome.wustl.edu	37	18	8394540	8394540	+	Missense_Mutation	SNP	G	G	C			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	18	8394540	8394540	G	C	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	+1	known	missense	c.4278	p.Q1426H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	37	0	0.00	25	17	40.48	-	-	-
RGPD1	0	genome.wustl.edu	37	2	87205014	87205014	+	Missense_Mutation	SNP	C	C	G			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	2	87205014	87205014	C	G	SNP	RGPD1	ENST00000398193	human	ensembl	69_37n	+1	known	missense	c.2423	p.S808C	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR-1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD1	HGNC	ENSG00000187627	19	0	0.00	7	5	41.67	-	-	-
SLC22A9	0	genome.wustl.edu	37	11	63137555	63137555	+	Silent	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	11	63137555	63137555	C	T	SNP	SLC22A9	ENST00000279178	human	ensembl	69_37n	+1	known	silent	c.27	p.H9	0.001	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742	85	0	0.00	42	9	17.65	-	-	-
SMC1A	0	genome.wustl.edu	37	X	53439044	53439046	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	X	53439044	53439046	CTT	-	DEL	SMC1A	ENST00000322213	human	ensembl	69_37n	-1	known	in_frame_del	c.1014_1012	p.K338in_frame_del	0.999:1.000:0.999	pfam_RecF/RecN/SMC,prints_Tropomyosin	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501	85	0	0.00	64	24	27.27	-	-	-
SMG1	0	genome.wustl.edu	37	16	18879677	18879677	+	Splice_Site	SNP	C	C	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	18879677	18879677	C	A	SNP	SMG1	ENST00000389467	human	ensembl	69_37n	-1	known	splice_site	c.3031-1	e22-1	1.000	-	-	-	no_errors	SMG1	HGNC	ENSG00000157106	93	0	0.00	52	77	59.69	-	-	-
SOLH	0	genome.wustl.edu	37	16	597356	597356	+	Missense_Mutation	SNP	C	C	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	597356	597356	C	T	SNP	SOLH	ENST00000219611	human	ensembl	69_37n	+1	known	missense	c.518	p.S173L	0.999	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	SOLH	HGNC	ENSG00000103326	8	0	0.00	5	5	50.00	-	-	-
TMEM161B	0	genome.wustl.edu	37	5	87492051	87492051	+	Missense_Mutation	SNP	G	G	T			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	5	87492051	87492051	G	T	SNP	TMEM161B	ENST00000296595	human	ensembl	69_37n	-1	known	missense	c.1441	p.H481N	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180	36	0	0.00	36	4	10.00	-	-	-
TRAP1	0	genome.wustl.edu	37	16	3714413	3714413	+	Silent	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	16	3714413	3714413	G	A	SNP	TRAP1	ENST00000246957	human	ensembl	69_37n	-1	known	silent	c.1431	p.S477	0.120	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602	80	0	0.00	44	58	56.31	-	-	-
TRIM37	0	genome.wustl.edu	37	17	57165759	57165759	+	Missense_Mutation	SNP	G	G	C			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	17	57165759	57165759	G	C	SNP	TRIM37	ENST00000580122	human	ensembl	69_37n	-1	known	missense	c.172	p.P58A	0.623	NULL	pfscan_Znf_RING	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TRIM37	HGNC	ENSG00000108395	24	0	0.00	22	15	40.54	-	-	-
URB2	0	genome.wustl.edu	37	1	229790001	229790001	+	Missense_Mutation	SNP	A	A	G			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	1	229790001	229790001	A	G	SNP	URB2	ENST00000258243	human	ensembl	69_37n	+1	known	missense	c.4243	p.I1415V	0.000	pfam_Urb2/Npa2_C	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763	98	0	0.00	110	20	15.38	-	-	-
ZFP36L2	0	genome.wustl.edu	37	2	43452870	43452870	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	2	43452870	43452870	G	A	SNP	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	missense	c.73	p.L25F	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	34	0	0.00	19	6	24.00	-	-	-
ZSWIM4	0	genome.wustl.edu	37	19	13941397	13941397	+	Missense_Mutation	SNP	G	G	A			TCGA-JL-A3YX-01A-11D-A22X-09	TCGA-JL-A3YX-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	72f91ad5-8d24-4a74-960c-646a15dd8d50	349f79fa-f1fa-4669-a522-7d33a00f78d6	19	13941397	13941397	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	69_37n	+1	known	missense	c.2503	p.A835T	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	85	0	0.00	97	11	10.19	-	-	-
