Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADCK2	0	genome.wustl.edu	37	7	140373767	140373767	+	Nonsense_Mutation	SNP	C	C	T			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	7	140373767	140373767	C	T	SNP	ADCK2	ENST00000072869	human	ensembl	69_37n	+1	known	nonsense	c.637	p.Q213*	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597	56	0	0.00	38	6	13.64	-	-	-
ANKRD22	0	genome.wustl.edu	37	10	90583107	90583107	+	Missense_Mutation	SNP	C	C	T			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	10	90583107	90583107	C	T	SNP	ANKRD22	ENST00000371930	human	ensembl	69_37n	-1	known	missense	c.428	p.C143Y	0.995	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766	47	0	0.00	37	5	11.90	-	-	-
ARHGEF37	0	genome.wustl.edu	37	5	149008411	149008411	+	Missense_Mutation	SNP	A	A	G			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	5	149008411	149008411	A	G	SNP	ARHGEF37	ENST00000333677	human	ensembl	69_37n	+1	known	missense	c.1700	p.Y567C	0.554	superfamily_SH3_domain,smart_SH3_domain	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111	57	0	0.00	36	8	18.18	-	-	-
CAPN13	0	genome.wustl.edu	37	2	30968593	30968593	+	Missense_Mutation	SNP	G	G	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	2	30968593	30968593	G	A	SNP	CAPN13	ENST00000295055	human	ensembl	69_37n	-1	known	missense	c.1244	p.S415L	0.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949	54	0	0.00	54	7	11.48	-	-	-
CDH1	0	genome.wustl.edu	37	16	68849436	68849436	+	Nonsense_Mutation	SNP	A	A	T			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	16	68849436	68849436	A	T	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	nonsense	c.1339	p.K447*	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	102	0	0.00	62	16	20.51	-	-	-
CDH24	0	genome.wustl.edu	37	14	23516833	23516833	+	RNA	SNP	G	G	T			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	14	23516833	23516833	G	T	SNP	CDH24	ENST00000485922	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.250	-	-	-	no_errors	CDH24	HGNC	ENSG00000139880	25	0	0.00	22	4	15.38	-	-	-
DSE	0	genome.wustl.edu	37	6	116756765	116756765	+	Silent	SNP	G	G	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	6	116756765	116756765	G	A	SNP	DSE	ENST00000537543	human	ensembl	69_37n	+1	known	silent	c.1191	p.L397	1.000	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817	37	0	0.00	26	4	13.33	-	-	-
ENSG00000267110	0	genome.wustl.edu	37	19	55669006	55669006	+	RNA	SNP	G	G	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	19	55669006	55669006	G	A	SNP	ENSG00000267110	ENST00000587871	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2587H24.4	Clone_based_vega_gene	ENSG00000267110	54	0	0.00	58	17	22.67	-	-	-
FAT4	0	genome.wustl.edu	37	4	126372852	126372852	+	Missense_Mutation	SNP	A	A	G			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	4	126372852	126372852	A	G	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	+1	known	missense	c.10681	p.S3561G	0.728	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	90	0	0.00	64	12	15.79	-	-	-
HOXB5	0	genome.wustl.edu	37	17	46669748	46669748	+	Missense_Mutation	SNP	C	C	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	17	46669748	46669748	C	A	SNP	HOXB5	ENST00000239151	human	ensembl	69_37n	-1	known	missense	c.633	p.K211N	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075	152	0	0.00	97	15	13.39	-	-	-
MUC20	0	genome.wustl.edu	37	3	195453014	195453014	+	Missense_Mutation	SNP	G	G	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	3	195453014	195453014	G	A	SNP	MUC20	ENST00000447234	human	ensembl	69_37n	+1	known	missense	c.1540	p.G514R	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	37	0	0.00	19	7	25.93	-	-	-
OGFR	0	genome.wustl.edu	37	20	61444665	61444665	+	Silent	SNP	G	G	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	20	61444665	61444665	G	A	SNP	OGFR	ENST00000290291	human	ensembl	69_37n	+1	known	silent	c.1698	p.P566	0.000	pfam_OGF_rcpt_rpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491	19	0	0.00	17	9	34.62	-	-	-
PDLIM2	0	genome.wustl.edu	37	8	22451688	22451688	+	RNA	SNP	G	G	C			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	8	22451688	22451688	G	C	SNP	PDLIM2	ENST00000443561	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDLIM2	HGNC	ENSG00000120913	9	0	0.00	1	4	80.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	59	0	0.00	39	8	17.02	-	-	-
RB1CC1	0	genome.wustl.edu	37	8	53568768	53568768	+	Silent	SNP	A	A	G			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	8	53568768	53568768	A	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	silent	c.3621	p.A1207	0.994	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	106	0	0.00	66	8	10.81	-	-	-
RPL23A	0	genome.wustl.edu	37	17	27047044	27047044	+	Silent	SNP	G	G	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	17	27047044	27047044	G	A	SNP	RPL23A	ENST00000422514	human	ensembl	69_37n	+1	known	silent	c.21	p.K7	1.000	NULL	pfam_Ribosomal_L23/L25_N,pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom,tigrfam_Ribosomal_L23	-	no_errors	RPL23A	HGNC	ENSG00000198242	47	0	0.00	39	11	22.00	-	-	-
SACS	0	genome.wustl.edu	37	13	23914806	23914806	+	Missense_Mutation	SNP	C	C	T			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	13	23914806	23914806	C	T	SNP	SACS	ENST00000382292	human	ensembl	69_37n	-1	known	missense	c.3209	p.G1070E	0.977	NULL	pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	72	0	0.00	33	9	21.43	-	-	-
SRC	0	genome.wustl.edu	37	20	36033505	36033505	+	RNA	SNP	C	C	T			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	20	36033505	36033505	C	T	SNP	SRC	ENST00000477066	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SRC	HGNC	ENSG00000197122	53	0	0.00	53	6	10.17	-	-	-
WSCD2	0	genome.wustl.edu	37	12	108604028	108604028	+	Missense_Mutation	SNP	G	G	A			TCGA-MS-A51U-01A-31D-A25Q-09	TCGA-MS-A51U-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	875e4406-438d-4fbd-b9c1-38fb81d05ef9	f67e6bbe-66ee-43e3-ad4e-86416ce2cf15	12	108604028	108604028	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	69_37n	+1	known	missense	c.628	p.A210T	0.983	smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	29	0	0.00	22	6	21.43	-	-	-
