Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HPSE2	60495	broad.mit.edu	36	10	100391672	100391672	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166246	exon7	c.C1020T	p.G340G	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101110626	101110626	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020348	exon3	c.C1762T	p.R588W	.	.	.
ENTPD7	57089	broad.mit.edu	36	10	101445832	101445832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020354	exon9	c.G973A	p.E325K	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101567112	101567112	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon17	c.A2152C	p.N718H	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101580118	101580118	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon20	c.C2685T	p.P895P	.	.	.
CHUK	1147	broad.mit.edu	36	10	101957032	101957032	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001278	exon11	c.T1176C	p.T392T	.	.	.
CWF19L1	55280	broad.mit.edu	36	10	102003234	102003234	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018294	exon6	c.C557T	p.T186M	.	.	.
CWF19L1	55280	broad.mit.edu	36	10	102010058	102010058	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018294	exon4	c.C196G	p.Q66E	.	.	.
NPM3	10360	broad.mit.edu	36	10	103531566	103531566	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006993	exon5	c.G454A	p.E152K	.	.	.
KCNIP2	30819	broad.mit.edu	36	10	103577974	103577974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173192	exon6	c.G467A	p.R156Q	.	.	.
KCNIP2	30819	broad.mit.edu	36	10	103578861	103578861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173192	exon3	c.G255A	p.T85T	.	.	.
CYP17A1	1586	broad.mit.edu	36	10	104585111	104585111	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000102	exon2	c.G326A	p.R109H	.	.	.
CNNM2	54805	broad.mit.edu	36	10	104804109	104804109	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199076	exon3	c.G1799A	p.R600Q	.	.	.
PDCD11	22984	broad.mit.edu	36	10	105175258	105175258	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014976	exon20	c.C3291T	p.D1097D	.	.	.
COL17A1	1308	broad.mit.edu	36	10	105787410	105787410	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000494	exon46	c.C3182T	p.A1061V	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105881100	105881100	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025145	exon37	c.A4810G	p.K1604E	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108347175	108347175	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052918	exon24	c.G3189A	p.T1063T	.	.	.
HABP2	3026	broad.mit.edu	36	10	115333949	115333949	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177660	exon11	c.C1212T	p.Y404Y	.	.	.
USP6NL	9712	broad.mit.edu	36	10	11545393	11545393	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014688	exon15	c.G1540A	p.A514T	.	.	.
C10orf118	55088	broad.mit.edu	36	10	115912720	115912720	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018017	exon2	c.A298G	p.N100D	.	.	.
AFAP1L2	84632	broad.mit.edu	36	10	116058246	116058246	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001936	exon9	c.C903T	p.Y301Y	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118192568	118192568	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011709	exon3	c.G216A	p.A72A	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118226283	118226283	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011709	exon11	c.A1302G	p.A434A	.	.	.
SLC18A2	6571	broad.mit.edu	36	10	118993695	118993695	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003054	exon3	c.C345T	p.S115S	.	.	.
SLC18A2	6571	broad.mit.edu	36	10	119007327	119007327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003054	exon10	c.G925A	p.A309T	.	.	.
SLC18A2	6571	broad.mit.edu	36	10	119019627	119019627	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003054	exon14	c.C1242T	p.H414H	.	.	.
PRLHR	2834	broad.mit.edu	36	10	120343868	120343868	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004248	exon2	c.G879A	p.P293P	.	.	.
TIAL1	7073	broad.mit.edu	36	10	121329487	121329487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033925	exon6	c.G448A	p.A150T	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124380564	124380564	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007329	exon46	c.T5736C	p.D1912D	.	.	.
ACADSB	36	broad.mit.edu	36	10	124802583	124802583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001609	exon10	c.C1145T	p.T382M	.	.	.
ADARB2	105	broad.mit.edu	36	10	1252976	1252976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018702	exon7	c.C1597T	p.R533C	.	.	.
GPR26	2849	broad.mit.edu	36	10	125416421	125416421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153442	exon1	c.G508A	p.A170T	.	.	.
CHST15	51363	broad.mit.edu	36	10	125770795	125770795	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon6	c.C1314T	p.C438C	.	.	.
ADARB2	105	broad.mit.edu	36	10	1269726	1269726	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018702	exon6	c.C1423T	p.L475L	.	.	.
FAM196A	642938	broad.mit.edu	36	10	128864355	128864355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039762	exon4	c.G295A	p.V99I	.	.	.
EBF3	253738	broad.mit.edu	36	10	131529163	131529163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005463	exon14	c.C1469T	p.A490V	.	.	.
EBF3	253738	broad.mit.edu	36	10	131561753	131561753	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005463	exon8	c.G734A	p.R245H	.	.	.
MCM10	55388	broad.mit.edu	36	10	13273394	13273394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018518	exon11	c.G1505A	p.R502Q	.	.	.
DPYSL4	10570	broad.mit.edu	36	10	133862367	133862367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006426	exon8	c.G713A	p.R238Q	.	.	.
KNDC1	85442	broad.mit.edu	36	10	134875311	134875311	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152643	exon23	c.G4195A	p.A1399T	.	.	.
BEND7	222389	broad.mit.edu	36	10	13563015	13563015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152751	exon6	c.C797T	p.A266V	.	.	.
FAM171A1	221061	broad.mit.edu	36	10	15366053	15366053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010924	exon2	c.C155T	p.A52V	.	.	.
CUBN	8029	broad.mit.edu	36	10	17066165	17066165	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon30	c.C4470T	p.T1490T	.	.	.
CUBN	8029	broad.mit.edu	36	10	17187553	17187553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon11	c.C1139T	p.P380L	.	.	.
STAM	8027	broad.mit.edu	36	10	17796591	17796591	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003473	exon14	c.G1429A	p.A477T	.	.	.
SLC39A12	221074	broad.mit.edu	36	10	18316541	18316541	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145195	exon7	c.C1224T	p.A408A	.	.	.
BMI1	648	broad.mit.edu	36	10	22655398	22655398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005180	exon2	c.C14T	p.T5M	.	.	.
ZMYND11	10771	broad.mit.edu	36	10	245931	245931	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212479	exon3	c.C219T	p.C73C	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24709882	24709882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon3	c.G433A	p.A145T	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24875067	24875067	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon21	c.G5640A	p.P1880P	.	.	.
GAD2	2572	broad.mit.edu	36	10	26547988	26547988	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134366	exon4	c.G297A	p.P99P	.	.	.
PDSS1	23590	broad.mit.edu	36	10	27071466	27071466	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014317	exon11	c.T1061C	p.F354S	.	.	.
MASTL	84930	broad.mit.edu	36	10	27494411	27494411	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172303	exon6	c.G748A	p.V250I	.	.	.
SVIL	6840	broad.mit.edu	36	10	29794663	29794663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon32	c.G4722A	p.A1574A	.	.	.
SVIL	6840	broad.mit.edu	36	10	29802869	29802869	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon28	c.C4155T	p.C1385C	.	.	.
SVIL	6840	broad.mit.edu	36	10	29809664	29809664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon27	c.G3907A	p.G1303R	.	.	.
SVIL	6840	broad.mit.edu	36	10	29819948	29819948	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon20	c.G2748A	p.T916T	.	.	.
SVIL	6840	broad.mit.edu	36	10	29862298	29862298	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021738	exon8	c.C1004T	p.A335V	.	.	.
MAP3K8	1326	broad.mit.edu	36	10	30787093	30787093	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005204	exon7	c.G948A	p.T316T	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32346164	32346164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004521	exon24	c.C2674T	p.R892C	.	.	.
BMS1	9790	broad.mit.edu	36	10	42609394	42609394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014753	exon9	c.C1178T	p.T393M	.	.	.
ZNF485	220992	broad.mit.edu	36	10	43431746	43431746	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145312	exon5	c.C249T	p.V83V	.	.	.
RASSF4	83937	broad.mit.edu	36	10	44806473	44806473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032023	exon9	c.G757A	p.A253T	.	.	.
ALOX5	240	broad.mit.edu	36	10	45197948	45197948	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000698	exon2	c.C162T	p.Y54Y	.	.	.
SYT15	83849	broad.mit.edu	36	10	46388650	46388650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181519	exon3	c.G292A	p.D98N	.	.	.
GPRIN2	9721	broad.mit.edu	36	10	46419942	46419942	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014696	exon3	c.G1056A	p.P352P	.	.	.
RBP3	5949	broad.mit.edu	36	10	48010173	48010173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002900	exon1	c.C711T	p.G237G	.	.	.
PRKG1	5592	broad.mit.edu	36	10	53337336	53337336	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006258	exon5	c.G762T	p.E254D	.	.	.
ANKRD16	54522	broad.mit.edu	36	10	5965105	5965105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009943	exon5	c.C719T	p.A240V	.	.	.
FBXO18	84893	broad.mit.edu	36	10	6003490	6003490	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032807	exon16	c.C2427T	p.A809A	.	.	.
IL2RA	3559	broad.mit.edu	36	10	6107838	6107838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000417	exon2	c.C221T	p.S74L	.	.	.
EGR2	1959	broad.mit.edu	36	10	64244084	64244084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000399	exon2	c.G320A	p.C107Y	.	.	.
REEP3	221035	broad.mit.edu	36	10	65050587	65050587	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001330	exon8	c.C720T	p.Y240Y	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	68610239	68610239	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013266	exon7	c.C889T	p.R297X	.	.	.
DNA2	1763	broad.mit.edu	36	10	69849647	69849647	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080449	exon18	c.G2964A	p.A988A	.	.	.
TET1	80312	broad.mit.edu	36	10	70003066	70003066	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030625	exon2	c.C965A	p.S322Y	.	.	.
TET1	80312	broad.mit.edu	36	10	70081657	70081657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030625	exon5	c.C4325T	p.A1442V	.	.	.
STOX1	219736	broad.mit.edu	36	10	70315276	70315276	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152709	exon3	c.C1718A	p.P573H	.	.	.
HKDC1	80201	broad.mit.edu	36	10	70675979	70675979	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025130	exon8	c.C1014T	p.H338H	.	.	.
HK1	3098	broad.mit.edu	36	10	70812457	70812457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033498	exon13	c.C1486T	p.R496W	.	.	.
NEUROG3	50674	broad.mit.edu	36	10	71002430	71002430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020999	exon2	c.C376T	p.R126C	.	.	.
H2AFY2	55506	broad.mit.edu	36	10	71538941	71538941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018649	exon8	c.G925A	p.V309I	.	.	.
LRRC20	55222	broad.mit.edu	36	10	71731247	71731247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207119	exon5	c.G424A	p.A142T	.	.	.
NODAL	4838	broad.mit.edu	36	10	71862782	71862782	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018055	exon3	c.G960A	p.P320P	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7253909	7253909	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon19	c.C2369T	p.A790V	.	.	.
CDH23	64072	broad.mit.edu	36	10	73237722	73237722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171933	exon13	c.C1954T	p.R652W	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7330528	7330528	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon8	c.G960A	p.A320A	.	.	.
SPOCK2	9806	broad.mit.edu	36	10	73498012	73498012	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014767	exon7	c.C528T	p.C176C	.	.	.
OIT3	170392	broad.mit.edu	36	10	74362194	74362194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152635	exon9	c.G1544A	p.R515Q	.	.	.
TTC18	118491	broad.mit.edu	36	10	74761015	74761015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145170	exon9	c.C913T	p.R305W	.	.	.
MYST4	23522	broad.mit.edu	36	10	76454746	76454746	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012330	exon17	c.A3397G	p.R1133G	.	.	.
ATP5C1	509	broad.mit.edu	36	10	7884762	7884762	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001973	exon8	c.C829T	p.R277C	.	.	.
ZMIZ1	57178	broad.mit.edu	36	10	80728859	80728859	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020338	exon16	c.C1713T	p.G571G	.	.	.
MAT1A	4143	broad.mit.edu	36	10	82024825	82024825	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000429	exon7	c.A879G	p.S293S	.	.	.
TUBB8	347688	broad.mit.edu	36	10	85127	85127	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177987	exon1	c.G52A	p.A18T	.	.	.
LRIT1	26103	broad.mit.edu	36	10	85987011	85987011	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015613	exon2	c.G534T	p.W178C	.	.	.
PTEN	5728	broad.mit.edu	36	10	89682884	89682884	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon5	c.C388T	p.R130X	 PTEN,central_nervous_system,brain,Substitution - Nonsense,0 	.	.
PTEN	5728	broad.mit.edu	36	10	89707652	89707652	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon7	c.C697T	p.R233X	 PTEN,central_nervous_system,brain,Substitution - Nonsense,0 	.	.
ANKRD22	118932	broad.mit.edu	36	10	90581659	90581659	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144590	exon2	c.G126A	p.T42T	.	.	.
LIPA	3988	broad.mit.edu	36	10	90964655	90964655	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127605	exon10	c.G1110A	p.P370P	.	.	.
IFIT1	3434	broad.mit.edu	36	10	91142454	91142454	+	De_novo_Start_OutOfFrame	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001548	exon1	c.G5T	p.S2I	.	.	.
HTR7	3363	broad.mit.edu	36	10	92498825	92498825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019859	exon2	c.C1046T	p.A349V	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93250340	93250340	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182765	exon19	c.G2052A	p.T684T	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94649347	94649347	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013848	exon5	c.T409A	p.Y137N	.	.	.
PDLIM1	9124	broad.mit.edu	36	10	97013754	97013754	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020992	exon4	c.G390A	p.S130S	.	.	.
TLL2	7093	broad.mit.edu	36	10	98170718	98170718	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012465	exon7	c.G908A	p.R303Q	.	.	.
PI4K2A	55361	broad.mit.edu	36	10	99423424	99423424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018425	exon9	c.C1375T	p.R459W	.	.	.
ZFYVE27	118813	broad.mit.edu	36	10	99500195	99500195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002261	exon6	c.C782T	p.T261M	.	.	.
MUC6	4588	broad.mit.edu	36	11	1016400	1016401	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005961	exon20	c.2473_2474insC	p.E825fs	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101354330	101354330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020802	exon7	c.G2888A	p.R963Q	.	.	.
YAP1	10413	broad.mit.edu	36	11	101490126	101490126	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006106	exon2	c.G363A	p.Q121Q	.	.	.
DDI1	414301	broad.mit.edu	36	11	103413584	103413584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001711	exon1	c.G824A	p.R275Q	.	.	.
AMPD3	272	broad.mit.edu	36	11	10463112	10463112	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025389	exon5	c.C759A	p.T253T	.	.	.
ELMOD1	55531	broad.mit.edu	36	11	107007549	107007549	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130037	exon5	c.G226A	p.A76T	.	.	.
CTR9	9646	broad.mit.edu	36	11	10757071	10757071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014633	exon25	c.G3365A	p.R1122H	.	.	.
C11orf87	399947	broad.mit.edu	36	11	108799604	108799604	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207645	exon2	c.C35T	p.A12V	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109955873	109955873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020809	exon16	c.G3007A	p.G1003S	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109987300	109987300	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020809	exon8	c.G651A	p.M217I	.	.	.
TTC12	54970	broad.mit.edu	36	11	112716651	112716651	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017868	exon11	c.C882T	p.N294N	.	.	.
USP28	57646	broad.mit.edu	36	11	113228454	113228454	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020886	exon3	c.G247A	p.A83T	.	.	.
HTR3A	3359	broad.mit.edu	36	11	113361974	113361974	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000869	exon6	c.G590A	p.R197H	.	.	.
GALNTL4	374378	broad.mit.edu	36	11	11410825	11410825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198516	exon3	c.C514T	p.R172C	.	.	.
BUD13	84811	broad.mit.edu	36	11	116138748	116138748	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032725	exon4	c.T767C	p.L256P	.	.	.
SIDT2	51092	broad.mit.edu	36	11	116558687	116558687	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040455	exon6	c.C657T	p.I219I	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116880888	116880888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon10	c.G2323A	p.G775S	.	.	.
TMPRSS13	84000	broad.mit.edu	36	11	117290399	117290399	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077263	exon4	c.G597A	p.E199E	.	.	.
MLL	4297	broad.mit.edu	36	11	117874427	117874427	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005933	exon22	c.C5926T	p.R1976X	.	.	.
MLL	4297	broad.mit.edu	36	11	117897285	117897285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005933	exon35	c.C11577T	p.A3859A	.	.	.
CXCR5	643	broad.mit.edu	36	11	118269760	118269760	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032966	exon1	c.G162A	p.L54L	.	.	.
CBL	867	broad.mit.edu	36	11	118661183	118661183	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005188	exon11	c.G1638A	p.P546P	.	.	.
PVRL1	5818	broad.mit.edu	36	11	119054657	119054657	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002855	exon2	c.C108T	p.N36N	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120281264	120281264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon11	c.G1328A	p.R443H	.	.	.
TECTA	7007	broad.mit.edu	36	11	120485340	120485340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon3	c.G409A	p.A137T	.	.	.
TECTA	7007	broad.mit.edu	36	11	120501362	120501362	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon7	c.G1345A	p.V449I	.	.	.
TECTA	7007	broad.mit.edu	36	11	120503828	120503828	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon8	c.C1932T	p.C644C	.	.	.
TECTA	7007	broad.mit.edu	36	11	120536222	120536222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon14	c.G4858A	p.G1620S	.	.	.
SORL1	6653	broad.mit.edu	36	11	120965216	120965216	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003105	exon29	c.G3985A	p.G1329S	.	.	.
HSPA8	3312	broad.mit.edu	36	11	122435902	122435902	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153201	exon5	c.C609T	p.G203G	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1232002	1232002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002458	exon34	c.C15322T	p.R5108C	.	.	.
OR8B4	283162	broad.mit.edu	36	11	123799488	123799488	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005196	exon1	c.C490T	p.R164X	.	.	.
ESAM	90952	broad.mit.edu	36	11	124129037	124129037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138961	exon7	c.C888A	p.P296P	.	.	.
ESAM	90952	broad.mit.edu	36	11	124133499	124133499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138961	exon2	c.C205T	p.P69S	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124269071	124269071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019055	exon9	c.C1399T	p.R467W	.	.	.
CDON	50937	broad.mit.edu	36	11	125393478	125393478	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon5	c.T597G	p.H199Q	.	.	.
CDON	50937	broad.mit.edu	36	11	125396435	125396435	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon3	c.C267A	p.S89S	.	.	.
DCPS	28960	broad.mit.edu	36	11	125706567	125706567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014026	exon3	c.G434A	p.R145H	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125800823	125800823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032531	exon16	c.C1813T	p.R605W	.	.	.
NFRKB	4798	broad.mit.edu	36	11	129244859	129244859	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143835	exon24	c.G3271A	p.V1091M	.	.	.
NFRKB	4798	broad.mit.edu	36	11	129252445	129252445	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143835	exon16	c.G1557A	p.R519R	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129320095	129320095	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020228	exon6	c.G543A	p.A181A	.	.	.
SNX19	399979	broad.mit.edu	36	11	130253532	130253532	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014758	exon11	c.T2974A	p.S992T	.	.	.
NTM	50863	broad.mit.edu	36	11	131521506	131521506	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144058	exon2	c.G288A	p.T96T	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133306655	133306655	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon10	c.T1271C	p.V424A	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133310759	133310759	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon7	c.G930A	p.G310G	.	.	.
JAM3	83700	broad.mit.edu	36	11	133521076	133521076	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032801	exon6	c.A773T	p.D258V	.	.	.
ARNTL	406	broad.mit.edu	36	11	13353744	13353744	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030273	exon15	c.C1052T	p.T351M	.	.	.
CTSD	1509	broad.mit.edu	36	11	1739243	1739243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001909	exon2	c.C100T	p.R34W	.	.	.
KCNC1	3746	broad.mit.edu	36	11	17750441	17750441	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004976	exon2	c.G1224A	p.P408P	.	.	.
MRGPRX3	117195	broad.mit.edu	36	11	18115970	18115970	+	Silent	SNP	C	T	T	rs72866709	by1000genomes	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054031	exon3	c.C645T	p.Y215Y	.	.	.
TMEM86A	144110	broad.mit.edu	36	11	18679872	18679872	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153347	exon3	c.G463A	p.G155S	.	.	.
PTPN5	84867	broad.mit.edu	36	11	18711447	18711447	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032781	exon11	c.G1129A	p.V377I	.	.	.
CSRP3	8048	broad.mit.edu	36	11	19164390	19164390	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003476	exon4	c.T363G	p.P121P	.	.	.
BET1L	51272	broad.mit.edu	36	11	195305	195305	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098787	exon4	c.G333A	p.T111T	.	.	.
NAV2	89797	broad.mit.edu	36	11	19912186	19912186	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon7	c.G1628A	p.G543D	.	.	.
NAV2	89797	broad.mit.edu	36	11	19926946	19926946	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon10	c.G2197A	p.A733T	.	.	.
DBX1	120237	broad.mit.edu	36	11	20134561	20134561	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029865	exon4	c.C807T	p.G269G	.	.	.
PSMD13	5719	broad.mit.edu	36	11	242542	242542	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002817	exon13	c.C1073T	p.T358M	.	.	.
KCNQ1	3784	broad.mit.edu	36	11	2549198	2549198	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181798	exon4	c.G291A	p.T97T	.	.	.
MUC15	143662	broad.mit.edu	36	11	26543492	26543492	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135092	exon3	c.A571G	p.S191G	.	.	.
ANO3	63982	broad.mit.edu	36	11	26577800	26577800	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031418	exon17	c.T1799A	p.V600D	.	.	.
ANO3	63982	broad.mit.edu	36	11	26621401	26621401	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031418	exon23	c.C2372T	p.A791V	.	.	.
CARS	833	broad.mit.edu	36	11	2996521	2996521	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014437	exon13	c.T1430G	p.F477C	.	.	.
QSER1	79832	broad.mit.edu	36	11	32910505	32910505	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076786	exon4	c.C738T	p.N246N	.	.	.
CSTF3	1479	broad.mit.edu	36	11	33119748	33119748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033505	exon3	c.G266A	p.S89N	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33327391	33327391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048200	exon13	c.C2726T	p.P909L	.	.	.
CAT	847	broad.mit.edu	36	11	34446415	34446415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001752	exon11	c.G1331A	p.R444Q	.	.	.
ELF5	2001	broad.mit.edu	36	11	34471610	34471610	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001422	exon3	c.G347A	p.R116H	.	.	.
TRIM44	54765	broad.mit.edu	36	11	35641652	35641652	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017583	exon1	c.C417T	p.S139S	.	.	.
LDLRAD3	143458	broad.mit.edu	36	11	36059854	36059854	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174902	exon3	c.G269A	p.R90Q	.	.	.
ART5	116969	broad.mit.edu	36	11	3618041	3618041	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053017	exon2	c.G194A	p.R65Q	.	.	.
TRAF6	7189	broad.mit.edu	36	11	36479386	36479386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145803	exon3	c.G256A	p.G86S	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093215	40093215	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020929	exon2	c.C1204T	p.R402W	.	.	.
CHST1	8534	broad.mit.edu	36	11	45627978	45627978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003654	exon4	c.G1072A	p.E358K	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628178	45628178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003654	exon4	c.C872T	p.P291L	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628890	45628890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003654	exon4	c.G160A	p.A54T	.	.	.
OR52I1	390037	broad.mit.edu	36	11	4571991	4571991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005169	exon1	c.C147T	p.I49I	.	.	.
MAPK8IP1	9479	broad.mit.edu	36	11	45883305	45883305	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005456	exon11	c.C1992T	p.P664P	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45912173	45912173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101802	exon18	c.C1965T	p.A655A	.	.	.
CREB3L1	90993	broad.mit.edu	36	11	46290500	46290500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052854	exon6	c.C802T	p.R268W	.	.	.
CREB3L1	90993	broad.mit.edu	36	11	46295581	46295581	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052854	exon10	c.C1225A	p.L409M	.	.	.
DGKZ	8525	broad.mit.edu	36	11	46352333	46352333	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003646	exon15	c.C1377T	p.H459H	.	.	.
AMBRA1	55626	broad.mit.edu	36	11	46375892	46375892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017749	exon19	c.C3311T	p.T1104M	.	.	.
F2	2147	broad.mit.edu	36	11	46704223	46704223	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000506	exon7	c.C798T	p.D266D	.	.	.
NR1H3	10062	broad.mit.edu	36	11	47239723	47239723	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130102	exon5	c.G623A	p.R208H	.	.	.
MADD	8567	broad.mit.edu	36	11	47260578	47260578	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003682	exon9	c.C1540T	p.R514C	.	.	.
MADD	8567	broad.mit.edu	36	11	47287660	47287660	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003682	exon28	c.G4079A	p.R1360Q	.	.	.
NDUFS3	4722	broad.mit.edu	36	11	47560258	47560258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004551	exon5	c.C424T	p.R142C	.	.	.
FNBP4	23360	broad.mit.edu	36	11	47710670	47710670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015308	exon11	c.G1815T	p.W605C	.	.	.
FNBP4	23360	broad.mit.edu	36	11	47731160	47731160	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015308	exon4	c.C521A	p.P174H	.	.	.
OR4X1	390113	broad.mit.edu	36	11	48242431	48242431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004726	exon1	c.G443A	p.G148D	.	.	.
OR51A4	401666	broad.mit.edu	36	11	4924623	4924623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005329	exon1	c.C284T	p.S95L	.	.	.
HBG2	3048	broad.mit.edu	36	11	5232208	5232208	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000184	exon2	c.C205T	p.L69L	.	.	.
OR52D1	390066	broad.mit.edu	36	11	5467404	5467404	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005163	exon1	c.G892C	p.A298P	.	.	.
OR5I1	10798	broad.mit.edu	36	11	55460020	55460020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006637	exon1	c.C433T	p.R145W	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5588012	5588012	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003818	exon6	c.C919T	p.R307X	.	.	.
LRRC55	219527	broad.mit.edu	36	11	56706722	56706722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005210	exon1	c.G779A	p.R260H	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5674261	5674261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199573	exon2	c.G223A	p.A75T	.	.	.
SLC43A3	29015	broad.mit.edu	36	11	56949603	56949603	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199329	exon4	c.C301T	p.R101C	.	.	.
SERPING1	710	broad.mit.edu	36	11	57130254	57130254	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000062	exon5	c.A881G	p.Y294C	.	.	.
CNTF	1270	broad.mit.edu	36	11	58146891	58146891	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000614	exon1	c.C90T	p.D30D	.	.	.
OR52E6	390078	broad.mit.edu	36	11	5819067	5819067	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005167	exon1	c.C637A	p.L213I	.	.	.
GLYAT	10249	broad.mit.edu	36	11	58234736	58234736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201648	exon5	c.C391T	p.R131C	.	.	.
GLYATL2	219970	broad.mit.edu	36	11	58361428	58361428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145016	exon4	c.G205A	p.D69N	.	.	.
OR4D10	390197	broad.mit.edu	36	11	59001777	59001777	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004705	exon1	c.A299G	p.Q100R	.	.	.
STX3	6809	broad.mit.edu	36	11	59319484	59319484	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178040	exon9	c.C739T	p.R247X	.	.	.
MS4A1	931	broad.mit.edu	36	11	59990073	59990073	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021950	exon5	c.T440A	p.L147X	.	.	.
PRPF19	27339	broad.mit.edu	36	11	60424964	60424964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014502	exon9	c.C656T	p.A219V	.	.	.
CD5	921	broad.mit.edu	36	11	60642271	60642271	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014207	exon3	c.T143C	p.L48P	.	.	.
VWCE	220001	broad.mit.edu	36	11	60806939	60806939	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152718	exon6	c.C556A	p.L186I	.	.	.
TMEM138	51524	broad.mit.edu	36	11	60891977	60891977	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016464	exon4	c.C307T	p.R103C	.	.	.
CDHR5	53841	broad.mit.edu	36	11	611659	611659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031264	exon5	c.C410T	p.T137M	.	.	.
BEST1	7439	broad.mit.edu	36	11	61481046	61481046	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004183	exon5	c.C636T	p.N212N	.	.	.
GANAB	23193	broad.mit.edu	36	11	62163141	62163141	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198335	exon4	c.G270A	p.E90E	.	.	.
INTS5	80789	broad.mit.edu	36	11	62173436	62173436	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030628	exon2	c.G692A	p.G231D	.	.	.
INTS5	80789	broad.mit.edu	36	11	62173571	62173571	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030628	exon2	c.C557T	p.T186M	.	.	.
CNGA4	1262	broad.mit.edu	36	11	6218300	6218300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037329	exon4	c.G700A	p.D234N	.	.	.
STX5	6811	broad.mit.edu	36	11	62351445	62351445	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003164	exon4	c.C298T	p.R100C	.	.	.
CCKBR	887	broad.mit.edu	36	11	6248875	6248875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176875	exon5	c.C870T	p.S290S	.	.	.
RCOR2	283248	broad.mit.edu	36	11	63440403	63440403	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173587	exon1	c.C102T	p.D34D	.	.	.
FLRT1	23769	broad.mit.edu	36	11	63641607	63641607	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013280	exon2	c.C1292T	p.A431V	.	.	.
APBB1	322	broad.mit.edu	36	11	6373981	6373981	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164	exon12	c.C1713A	p.S571S	.	.	.
PLCB3	5331	broad.mit.edu	36	11	63782967	63782967	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184883	exon10	c.C1087T	p.R363C	.	.	.
CCDC88B	283234	broad.mit.edu	36	11	63875281	63875281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032251	exon17	c.G2936A	p.R979Q	.	.	.
RASGRP2	10235	broad.mit.edu	36	11	64264997	64264997	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098670	exon5	c.G370A	p.V124I	.	.	.
ATG2A	23130	broad.mit.edu	36	11	64437890	64437890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015104	exon4	c.C569T	p.A190V	.	.	.
SNX15	29907	broad.mit.edu	36	11	64559181	64559181	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013306	exon5	c.G447A	p.P149P	.	.	.
CAPN1	823	broad.mit.edu	36	11	64728775	64728775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198868	exon11	c.C1211T	p.T404M	.	.	.
SCYL1	57410	broad.mit.edu	36	11	65060352	65060352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048218	exon12	c.C1622T	p.S541L	.	.	.
LTBP3	4054	broad.mit.edu	36	11	65076367	65076367	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021070	exon7	c.C1273G	p.R425G	.	.	.
EHBP1L1	254102	broad.mit.edu	36	11	65103169	65103169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099409	exon2	c.G149A	p.R50H	.	.	.
EHBP1L1	254102	broad.mit.edu	36	11	65104387	65104387	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099409	exon6	c.C495T	p.D165D	.	.	.
MAP3K11	4296	broad.mit.edu	36	11	65132070	65132070	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002419	exon3	c.G968A	p.R323H	.	.	.
PCNXL3	399909	broad.mit.edu	36	11	65151024	65151024	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032223	exon21	c.C3453T	p.P1151P	.	.	.
RELA	5970	broad.mit.edu	36	11	65178776	65178776	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021975	exon11	c.G1305A	p.T435T	.	.	.
BANF1	8815	broad.mit.edu	36	11	65527807	65527807	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143985	exon3	c.C258T	p.D86D	.	.	.
CATSPER1	117144	broad.mit.edu	36	11	65549971	65549971	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053054	exon1	c.C456A	p.P152P	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65581398	65581398	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006842	exon7	c.G753A	p.P251P	.	.	.
PACS1	55690	broad.mit.edu	36	11	65757946	65757946	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018026	exon16	c.C1953T	p.S651S	.	.	.
KLC2	64837	broad.mit.edu	36	11	65788429	65788429	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134775	exon9	c.C1154T	p.A385V	.	.	.
RAB1B	81876	broad.mit.edu	36	11	65795883	65795883	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030981	exon2	c.C54T	p.G18G	.	.	.
CTSF	8722	broad.mit.edu	36	11	66087992	66087992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003793	exon13	c.G1443A	p.A481A	.	.	.
RBM4B	83759	broad.mit.edu	36	11	66201016	66201016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031492	exon2	c.C111T	p.Y37Y	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66239969	66239969	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006946	exon3	c.C217T	p.R73W	.	.	.
DEAF1	10522	broad.mit.edu	36	11	668761	668761	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021008	exon9	c.C1188T	p.G396G	.	.	.
CABP4	57010	broad.mit.edu	36	11	66981629	66981629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145200	exon4	c.G551A	p.R184H	.	.	.
NDUFV1	4723	broad.mit.edu	36	11	67135147	67135147	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166102	exon6	c.G779A	p.R260H	.	.	.
OR2AG1	144125	broad.mit.edu	36	11	6763133	6763133	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004489	exon1	c.T289C	p.C97R	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68125988	68125988	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164164	exon20	c.G2034A	p.A678A	.	.	.
TPCN2	219931	broad.mit.edu	36	11	68597018	68597018	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139075	exon13	c.C1203T	p.N401N	.	.	.
ZNF215	7762	broad.mit.edu	36	11	6920968	6920968	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013250	exon5	c.C562A	p.L188M	.	.	.
RBMXL2	27288	broad.mit.edu	36	11	7066944	7066944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014469	exon1	c.G17A	p.R6H	.	.	.
KRTAP5-9	3846	broad.mit.edu	36	11	70937466	70937466	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005553	exon1	c.G115A	p.V39I	.	.	.
NUMA1	4926	broad.mit.edu	36	11	71404546	71404546	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006185	exon15	c.C1651T	p.H551Y	.	.	.
NUMA1	4926	broad.mit.edu	36	11	71408190	71408190	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006185	exon9	c.C582T	p.N194N	.	.	.
FOLR1	2348	broad.mit.edu	36	11	71584643	71584643	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016724	exon6	c.C548A	p.P183H	.	.	.
UCP3	7352	broad.mit.edu	36	11	73392626	73392626	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022803	exon6	c.G718A	p.V240M	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73521642	73521642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015531	exon7	c.G1112A	p.R371Q	.	.	.
OLFML1	283298	broad.mit.edu	36	11	7487313	7487313	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198474	exon3	c.A527G	p.Y176C	.	.	.
MAP6	4135	broad.mit.edu	36	11	74996925	74996925	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033063	exon2	c.T996C	p.H332H	.	.	.
WNT11	7481	broad.mit.edu	36	11	75583413	75583413	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004626	exon3	c.C443A	p.P148H	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75852637	75852637	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020193	exon7	c.T696C	p.T232T	.	.	.
TSKU	25987	broad.mit.edu	36	11	76184767	76184767	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015516	exon2	c.G459A	p.T153T	.	.	.
TSKU	25987	broad.mit.edu	36	11	76185231	76185231	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015516	exon2	c.T923C	p.V308A	.	.	.
RSF1	51773	broad.mit.edu	36	11	77065651	77065651	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016578	exon13	c.C3175T	p.R1059C	.	.	.
ALG8	79053	broad.mit.edu	36	11	77493114	77493114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007027	exon11	c.G1212A	p.S404S	.	.	.
ALG8	79053	broad.mit.edu	36	11	77516105	77516105	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007027	exon2	c.C121T	p.R41X	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78064901	78064901	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon30	c.C5440T	p.R1814C	.	.	.
EFCAB4A	283229	broad.mit.edu	36	11	818870	818870	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173584	exon3	c.C184T	p.P62S	.	.	.
C11orf82	220042	broad.mit.edu	36	11	82322674	82322674	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145018	exon6	c.C2646T	p.G882G	.	.	.
PCF11	51585	broad.mit.edu	36	11	82555151	82555151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon5	c.C1564T	p.R522C	.	.	.
PCF11	51585	broad.mit.edu	36	11	82570583	82570583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon13	c.C4207T	p.R1403W	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85109583	85109583	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032943	exon9	c.C1527A	p.S509S	.	.	.
ST5	6764	broad.mit.edu	36	11	8688976	8688976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon14	c.C2344T	p.R782C	.	.	.
ST5	6764	broad.mit.edu	36	11	8693749	8693749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon9	c.C1822T	p.R608C	.	.	.
ST5	6764	broad.mit.edu	36	11	8708089	8708089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon6	c.C1324T	p.R442C	.	.	.
CHID1	66005	broad.mit.edu	36	11	873170	873170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142676	exon11	c.C1012T	p.R338C	.	.	.
GRM5	2915	broad.mit.edu	36	11	87977661	87977661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000842	exon5	c.G1267A	p.A423T	.	.	.
DENND5A	23258	broad.mit.edu	36	11	9120105	9120105	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015213	exon22	c.G3638A	p.G1213D	.	.	.
DENND5A	23258	broad.mit.edu	36	11	9148882	9148882	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015213	exon9	c.G1925A	p.R642H	.	.	.
FAT3	120114	broad.mit.edu	36	11	92172653	92172653	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon9	c.C6826T	p.L2276L	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93436470	93436470	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098672	exon3	c.G564A	p.S188S	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93443265	93443265	+	Missense_Mutation	SNP	C	T	T	rs12291622	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098672	exon6	c.C1141T	p.R381C	.	.	.
PIWIL4	143689	broad.mit.edu	36	11	93956349	93956349	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152431	exon5	c.G601A	p.V201M	.	.	.
PIWIL4	143689	broad.mit.edu	36	11	93980429	93980429	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152431	exon14	c.C1815T	p.G605G	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94232405	94232405	+	Missense_Mutation	SNP	G	A	A	rs35278871	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130847	exon9	c.G2012A	p.R671Q	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94237574	94237574	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130847	exon10	c.G2162A	p.R721Q	.	.	.
ZNF143	7702	broad.mit.edu	36	11	9490635	9490635	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003442	exon13	c.C1440T	p.D480D	.	.	.
AP2A2	161	broad.mit.edu	36	11	978562	978562	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012305	exon10	c.A1142G	p.D381G	.	.	.
OR5T2	219464	broad.mit.edu	36	11	55756161	55756161	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004746	exon1	c.1077delA	p.K359fs	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100560465	100560465	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002465	exon11	c.G803A	p.R268H	.	.	.
C12orf59	120939	broad.mit.edu	36	12	10230407	10230407	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153022	exon3	c.A199G	p.T67A	.	.	.
STAB2	55576	broad.mit.edu	36	12	102658653	102658653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon55	c.G5870A	p.R1957Q	.	.	.
STAB2	55576	broad.mit.edu	36	12	102676108	102676108	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon64	c.C7018T	p.R2340X	.	.	.
EID3	493861	broad.mit.edu	36	12	103221963	103221963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008394	exon1	c.C121T	p.R41C	.	.	.
CHST11	50515	broad.mit.edu	36	12	103675050	103675050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173982	exon3	c.G383A	p.R128Q	.	.	.
APPL2	55198	broad.mit.edu	36	12	104107961	104107961	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018171	exon15	c.G1344A	p.T448T	.	.	.
RFX4	5992	broad.mit.edu	36	12	105614280	105614280	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032491	exon4	c.C477T	p.G159G	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106538068	106538068	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017523	exon9	c.C1239T	p.S413S	.	.	.
ASCL4	121549	broad.mit.edu	36	12	106693134	106693134	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203436	exon1	c.G12A	p.T4T	.	.	.
FICD	11153	broad.mit.edu	36	12	107435104	107435104	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007076	exon2	c.C225T	p.C75C	.	.	.
SELPLG	6404	broad.mit.edu	36	12	107541902	107541902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003006	exon2	c.C311T	p.T104M	.	.	.
ACACB	32	broad.mit.edu	36	12	108094465	108094465	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon5	c.G1038A	p.A346A	.	.	.
TCHP	84260	broad.mit.edu	36	12	108835237	108835237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143852	exon10	c.G1111A	p.A371T	.	.	.
TCTN1	79600	broad.mit.edu	36	12	109562629	109562629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082537	exon8	c.G902A	p.R301Q	.	.	.
ATXN2	6311	broad.mit.edu	36	12	110438426	110438426	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002973	exon10	c.G1770A	p.S590S	.	.	.
NAA25	80018	broad.mit.edu	36	12	110994165	110994165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024953	exon10	c.G953A	p.R318H	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111106701	111106701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon60	c.C9936T	p.S3312S	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111107123	111107123	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon60	c.G9514A	p.G3172R	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111132239	111132239	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon49	c.A7314G	p.P2438P	.	.	.
IQCD	115811	broad.mit.edu	36	12	112118057	112118057	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138451	exon3	c.C750T	p.D250D	.	.	.
TPCN1	53373	broad.mit.edu	36	12	112194860	112194860	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017901	exon8	c.T763C	p.S255P	.	.	.
SDSL	113675	broad.mit.edu	36	12	112357527	112357527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138432	exon7	c.G454A	p.A152T	.	.	.
TBX3	6926	broad.mit.edu	36	12	113594056	113594056	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005996	exon7	c.G2145A	p.P715P	.	.	.
TBX3	6926	broad.mit.edu	36	12	113596469	113596469	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005996	exon6	c.G1594A	p.G532S	.	.	.
MED13L	23389	broad.mit.edu	36	12	114908550	114908550	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015335	exon19	c.C4242T	p.G1414G	.	.	.
MED13L	23389	broad.mit.edu	36	12	114942027	114942027	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015335	exon6	c.G759A	p.S253S	.	.	.
NOS1	4842	broad.mit.edu	36	12	116142290	116142290	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000620	exon27	c.C4143T	p.D1381D	.	.	.
NOS1	4842	broad.mit.edu	36	12	116194614	116194614	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000620	exon10	c.G1798A	p.V600I	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118052970	118052970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194286	exon8	c.G719A	p.R240H	.	.	.
CCDC60	160777	broad.mit.edu	36	12	118427297	118427297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178499	exon7	c.G689A	p.R230H	.	.	.
CCDC60	160777	broad.mit.edu	36	12	118445938	118445938	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178499	exon11	c.G1161T	p.R387S	.	.	.
CIT	11113	broad.mit.edu	36	12	118652809	118652809	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007174	exon26	c.C3234T	p.A1078A	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119051516	119051516	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon57	c.G7837A	p.D2613N	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119105781	119105781	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon5	c.C400T	p.R134X	.	.	.
SIRT4	23409	broad.mit.edu	36	12	119226006	119226006	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012240	exon2	c.C259A	p.R87S	.	.	.
RNF10	9921	broad.mit.edu	36	12	119486037	119486037	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014868	exon10	c.C1573T	p.R525C	.	.	.
P2RX4	5025	broad.mit.edu	36	12	120155273	120155273	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002560	exon11	c.G1135A	p.E379K	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120432113	120432113	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032590	exon11	c.C1287T	p.G429G	.	.	.
ORAI1	84876	broad.mit.edu	36	12	120563696	120563696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032790	exon2	c.G676A	p.V226I	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121323446	121323446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198240	exon24	c.C4108T	p.R1370C	.	.	.
PITPNM2	57605	broad.mit.edu	36	12	122055838	122055838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020845	exon6	c.C854T	p.P285L	.	.	.
LRP6	4040	broad.mit.edu	36	12	12225469	12225469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002336	exon6	c.C1148T	p.A383V	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122381796	122381796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018183	exon7	c.C986T	p.T329M	.	.	.
SETD8	387893	broad.mit.edu	36	12	122455485	122455485	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020382	exon7	c.C759T	p.T253T	.	.	.
DDX55	57696	broad.mit.edu	36	12	122665702	122665702	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020936	exon9	c.A842T	p.E281V	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122831636	122831636	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon6	c.C495T	p.V165V	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122979840	122979840	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon70	c.C12018T	p.H4006H	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123401128	123401128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006312	exon30	c.G3823A	p.V1275I	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123401222	123401222	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006312	exon30	c.C3729T	p.D1243D	.	.	.
DDX47	51202	broad.mit.edu	36	12	12865491	12865491	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201224	exon3	c.G264T	p.E88D	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128750505	128750505	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon2	c.C771T	p.I257I	.	.	.
STX2	2054	broad.mit.edu	36	12	129859140	129859140	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194356	exon5	c.C343T	p.R115X	.	.	.
EP400	57634	broad.mit.edu	36	12	131012194	131012194	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon2	c.G1077A	p.P359P	.	.	.
EP400	57634	broad.mit.edu	36	12	131030204	131030204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon3	c.G1345A	p.A449T	.	.	.
EP400	57634	broad.mit.edu	36	12	131117371	131117371	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon49	c.G8650A	p.V2884I	.	.	.
POLE	5426	broad.mit.edu	36	12	131764265	131764265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006231	exon7	c.G692A	p.R231H	.	.	.
ZNF26	7574	broad.mit.edu	36	12	132097243	132097243	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019591	exon4	c.C705T	p.C235C	.	.	.
ERP27	121506	broad.mit.edu	36	12	14982225	14982225	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152321	exon2	c.G123A	p.T41T	.	.	.
CACNA2D4	93589	broad.mit.edu	36	12	1835501	1835501	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172364	exon22	c.G2090A	p.R697Q	.	.	.
CAPZA3	93661	broad.mit.edu	36	12	18782931	18782931	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033328	exon1	c.C462T	p.C154C	.	.	.
GYS2	2998	broad.mit.edu	36	12	21648716	21648716	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021957	exon1	c.G78T	p.E26D	.	.	.
LYRM5	144363	broad.mit.edu	36	12	25248344	25248344	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001660	exon3	c.G104A	p.R35H	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
IFLTD1	160492	broad.mit.edu	36	12	25590603	25590603	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145727	exon2	c.C211T	p.L71F	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26528004	26528004	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon42	c.G5906A	p.G1969D	.	.	.
TULP3	7289	broad.mit.edu	36	12	2917616	2917616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160408	exon10	c.G1099A	p.V367I	.	.	.
FAR2	55711	broad.mit.edu	36	12	29341338	29341338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018099	exon4	c.G483A	p.K161K	.	.	.
PKP2	5318	broad.mit.edu	36	12	32922359	32922359	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004572	exon3	c.T722G	p.L241R	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42110508	42110508	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon23	c.C3295T	p.R1099X	.	.	.
C12orf4	57102	broad.mit.edu	36	12	4497647	4497647	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020374	exon8	c.C871A	p.L291M	.	.	.
HDAC7	51564	broad.mit.edu	36	12	46465919	46465919	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098416	exon22	c.G2478A	p.T826T	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46665779	46665779	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033150	exon24	c.G1472A	p.R491Q	.	.	.
CCNT1	904	broad.mit.edu	36	12	47374084	47374084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001240	exon9	c.G1180A	p.A394T	.	.	.
TROAP	10024	broad.mit.edu	36	12	48007340	48007340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005480	exon8	c.G851A	p.R284Q	.	.	.
SPATS2	65244	broad.mit.edu	36	12	48174840	48174840	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023071	exon7	c.G314A	p.G105D	.	.	.
PRPF40B	25766	broad.mit.edu	36	12	48312653	48312653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031698	exon4	c.C236T	p.P79L	.	.	.
ACCN2	41	broad.mit.edu	36	12	48757315	48757315	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020039	exon4	c.G611A	p.R204Q	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5024564	5024564	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002234	exon1	c.G990A	p.T330T	.	.	.
FIGNL2	401720	broad.mit.edu	36	12	50502192	50502192	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013690	exon1	c.C273T	p.G91G	.	.	.
KRT84	3890	broad.mit.edu	36	12	51065479	51065479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033045	exon1	c.G158A	p.R53Q	.	.	.
KRT75	9119	broad.mit.edu	36	12	51104769	51104769	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004693	exon9	c.C1455T	p.S485S	.	.	.
KRT75	9119	broad.mit.edu	36	12	51110629	51110629	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004693	exon5	c.G998A	p.R333H	.	.	.
KRT78	196374	broad.mit.edu	36	12	51526852	51526852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173352	exon3	c.G623A	p.R208H	.	.	.
KRT8	3856	broad.mit.edu	36	12	51578881	51578881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002273	exon6	c.G1051A	p.A351T	.	.	.
SOAT2	8435	broad.mit.edu	36	12	51795542	51795542	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003578	exon6	c.A545G	p.Y182C	.	.	.
ITGB7	3695	broad.mit.edu	36	12	51872803	51872803	+	Missense_Mutation	SNP	C	T	T	rs61754162	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000889	exon13	c.G1885A	p.G629S	.	.	.
ITGB7	3695	broad.mit.edu	36	12	51874381	51874381	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000889	exon10	c.C1176T	p.T392T	.	.	.
RARG	5916	broad.mit.edu	36	12	51893695	51893695	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000966	exon8	c.C870T	p.D290D	.	.	.
ESPL1	9700	broad.mit.edu	36	12	51949893	51949893	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012291	exon3	c.G900A	p.L300L	.	.	.
ESPL1	9700	broad.mit.edu	36	12	51970967	51970967	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012291	exon25	c.G5440T	p.G1814C	.	.	.
MAP3K12	7786	broad.mit.edu	36	12	52162104	52162104	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193511	exon13	c.A2468G	p.D823G	.	.	.
HOXC12	3228	broad.mit.edu	36	12	52635120	52635120	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173860	exon1	c.G140A	p.R47H	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53643099	53643099	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098815	exon9	c.C850T	p.R284W	.	.	.
OR6C1	390321	broad.mit.edu	36	12	54001290	54001290	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005182	exon1	c.C640T	p.L214L	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54378952	54378952	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144997	exon6	c.G528A	p.S176S	.	.	.
CDK2	1017	broad.mit.edu	36	12	54648852	54648852	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052827	exon4	c.G339T	p.Q113H	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54765119	54765119	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005915	exon3	c.G308A	p.R103H	.	.	.
ESYT1	23344	broad.mit.edu	36	12	54814430	54814430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015292	exon15	c.C1583T	p.A528V	.	.	.
SLC39A5	283375	broad.mit.edu	36	12	54915683	54915683	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135195	exon6	c.G877A	p.G293R	.	.	.
ANKRD52	283373	broad.mit.edu	36	12	54935895	54935895	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173595	exon5	c.C402T	p.N134N	.	.	.
SPRYD4	283377	broad.mit.edu	36	12	55149367	55149367	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207344	exon2	c.C363A	p.S121S	.	.	.
NACA	4666	broad.mit.edu	36	12	55400602	55400602	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113203	exon3	c.G979T	p.G327C	.	.	.
GPR182	11318	broad.mit.edu	36	12	55675308	55675308	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007264	exon2	c.C48T	p.T16T	.	.	.
NAB2	4665	broad.mit.edu	36	12	55771454	55771454	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005967	exon2	c.C363T	p.P121P	.	.	.
NAB2	4665	broad.mit.edu	36	12	55773206	55773206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005967	exon5	c.G1237A	p.A413T	.	.	.
LRP1	4035	broad.mit.edu	36	12	55881620	55881620	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon66	c.C10419T	p.C3473C	.	.	.
R3HDM2	22864	broad.mit.edu	36	12	55949099	55949099	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014925	exon15	c.C1706T	p.A569V	.	.	.
INHBC	3626	broad.mit.edu	36	12	56129826	56129826	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005538	exon2	c.C813T	p.Y271Y	.	.	.
VWF	7450	broad.mit.edu	36	12	5973855	5973855	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000552	exon36	c.G6243A	p.T2081T	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65086351	65086351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178074	exon15	c.C1807T	p.R603C	.	.	.
CHD4	1108	broad.mit.edu	36	12	6571930	6571930	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon19	c.G2838A	p.L946L	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6617765	6617765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032489	exon10	c.G1576A	p.V526I	.	.	.
ING4	51147	broad.mit.edu	36	12	6632126	6632126	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127586	exon5	c.C463A	p.P155T	.	.	.
ZNF384	171017	broad.mit.edu	36	12	6648614	6648614	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135734	exon10	c.C1176A	p.S392S	.	.	.
LAG3	3902	broad.mit.edu	36	12	6756768	6756768	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002286	exon6	c.C1135T	p.R379C	.	.	.
CDCA3	83461	broad.mit.edu	36	12	6828617	6828617	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031299	exon6	c.C658T	p.R220W	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69251250	69251250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109754	exon13	c.G3193A	p.D1065N	.	.	.
PTPN6	5777	broad.mit.edu	36	12	6934687	6934687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002831	exon5	c.G629A	p.R210Q	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70307874	70307874	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144982	exon21	c.G4054A	p.A1352T	.	.	.
CLSTN3	9746	broad.mit.edu	36	12	7201846	7201846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014718	exon18	c.G2773A	p.G925S	.	.	.
NAV3	89795	broad.mit.edu	36	12	76925331	76925331	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon8	c.G1882A	p.A628T	.	.	.
PPP1R12A	4659	broad.mit.edu	36	12	78704335	78704335	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143886	exon22	c.A2596G	p.T866A	.	.	.
ALX1	8092	broad.mit.edu	36	12	84198317	84198317	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006982	exon1	c.C147T	p.C49C	.	.	.
CEP290	80184	broad.mit.edu	36	12	87048466	87048466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025114	exon8	c.G503A	p.R168H	.	.	.
PHC1	1911	broad.mit.edu	36	12	8981071	8981071	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004426	exon13	c.T2510C	p.L837P	.	.	.
USP44	84101	broad.mit.edu	36	12	94451560	94451560	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042403	exon2	c.A604G	p.K202E	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98724375	98724375	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152788	exon4	c.C607T	p.R203C	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	98976964	98976964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015054	exon14	c.C2222T	p.P741L	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	99016286	99016286	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006947	exon5	c.G503A	p.R168H	.	.	.
RPLP0	6175	broad.mit.edu	36	12	119118965	119118966	+	Frame_Shift_Del	DEL	AA	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002	exon8	c.947_948del	p.316_316del	.	.	.
GUCY2C	2984	broad.mit.edu	36	12	14696181	14696181	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004963	exon14	c.1584delA	p.K528fs	.	.	.
OR6C70	390327	broad.mit.edu	36	12	54149271	54149272	+	Frame_Shift_Del	DEL	AT	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005499	exon1	c.918_919del	p.306_307del	.	.	.
TMTC4	84899	broad.mit.edu	36	13	100113320	100113320	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032813	exon5	c.G451A	p.G151S	.	.	.
C13orf27	93081	broad.mit.edu	36	13	102218637	102218637	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138779	exon4	c.A272G	p.Y91C	.	.	.
LIG4	3981	broad.mit.edu	36	13	107659788	107659788	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002312	exon2	c.C1830T	p.L610L	.	.	.
MYO16	23026	broad.mit.edu	36	13	108116491	108116491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon2	c.C285T	p.D95D	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109662799	109662799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001845	exon6	c.G353A	p.G118D	.	.	.
CARKD	55739	broad.mit.edu	36	13	110085050	110085050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018210	exon7	c.G577A	p.A193T	.	.	.
MCF2L	23263	broad.mit.edu	36	13	112727018	112727018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024979	exon3	c.G235A	p.E79K	.	.	.
PROZ	8858	broad.mit.edu	36	13	112874078	112874078	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003891	exon8	c.C861T	p.F287F	.	.	.
PCID2	55795	broad.mit.edu	36	13	112882494	112882494	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018386	exon11	c.C839T	p.A280V	.	.	.
ZMYM2	7750	broad.mit.edu	36	13	19503499	19503499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197968	exon10	c.C1892T	p.A631V	.	.	.
TNFRSF19	55504	broad.mit.edu	36	13	23141025	23141025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148957	exon9	c.C1034T	p.T345M	.	.	.
MIPEP	4285	broad.mit.edu	36	13	23228743	23228743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005932	exon18	c.G1985A	p.R662H	.	.	.
ATP12A	479	broad.mit.edu	36	13	24162762	24162762	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185085	exon7	c.G702A	p.T234T	.	.	.
ATP12A	479	broad.mit.edu	36	13	24172947	24172947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185085	exon13	c.G1786A	p.A596T	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25061805	25061805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016529	exon24	c.G2179A	p.A727T	.	.	.
RNF6	6049	broad.mit.edu	36	13	25687265	25687265	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005977	exon5	c.C754T	p.R252C	.	.	.
FLT3	2322	broad.mit.edu	36	13	27487369	27487369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004119	exon22	c.C2678T	p.P893L	.	.	.
PAN3	255967	broad.mit.edu	36	13	27739485	27739485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175854	exon12	c.G1739A	p.S580N	.	.	.
FLT1	2321	broad.mit.edu	36	13	27801855	27801855	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon19	c.G2604A	p.T868T	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28497559	28497559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon1	c.C754T	p.R252C	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28498529	28498529	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon1	c.C1724T	p.A575V	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28969427	28969427	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon11	c.G3662A	p.R1221H	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28970638	28970638	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon12	c.C3792T	p.H1264H	.	.	.
SLC7A1	6541	broad.mit.edu	36	13	28989719	28989719	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003045	exon10	c.A1501G	p.S501G	.	.	.
UBL3	5412	broad.mit.edu	36	13	29244296	29244296	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007106	exon3	c.G176A	p.R59Q	.	.	.
USPL1	10208	broad.mit.edu	36	13	30130713	30130713	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005800	exon9	c.A2499G	p.P833P	.	.	.
FRY	10129	broad.mit.edu	36	13	31721675	31721675	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon49	c.G7021A	p.G2341R	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32156137	32156137	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015032	exon11	c.A1180T	p.R394X	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32204326	32204326	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015032	exon20	c.T2212C	p.S738P	.	.	.
STARD13	90627	broad.mit.edu	36	13	32579061	32579061	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178006	exon13	c.A3058G	p.T1020A	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35598142	35598142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004734	exon2	c.C133T	p.R45C	.	.	.
SMAD9	4093	broad.mit.edu	36	13	36337876	36337876	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005905	exon4	c.C690T	p.Y230Y	.	.	.
ALG5	29880	broad.mit.edu	36	13	36437850	36437850	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142364	exon7	c.G545A	p.R182H	.	.	.
NAA16	79612	broad.mit.edu	36	13	40830462	40830462	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024561	exon11	c.G1110A	p.P370P	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45447465	45447465	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015070	exon12	c.C2422T	p.R808X	.	.	.
CPB2	1361	broad.mit.edu	36	13	45556369	45556369	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016413	exon3	c.C261T	p.S87S	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45816924	45816924	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025113	exon14	c.C1829T	p.T610M	.	.	.
KPNA3	3839	broad.mit.edu	36	13	49177759	49177759	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002267	exon15	c.A1371C	p.G457G	.	.	.
THSD1	55901	broad.mit.edu	36	13	51850713	51850713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018676	exon5	c.G1393A	p.E465K	.	.	.
VPS36	51028	broad.mit.edu	36	13	51899153	51899153	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016075	exon8	c.A611C	p.D204A	.	.	.
PCDH8	5100	broad.mit.edu	36	13	52316892	52316892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032949	exon3	c.C2726T	p.A909V	.	.	.
LMO7	4008	broad.mit.edu	36	13	75327402	75327402	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005358	exon28	c.T3821C	p.V1274A	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390462	77390462	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122659	exon1	c.G248A	p.R83H	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353489	83353489	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052910	exon1	c.G155A	p.R52H	.	.	.
SLITRK5	26050	broad.mit.edu	36	13	87125699	87125699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015567	exon2	c.C55T	p.H19Y	.	.	.
SLITRK5	26050	broad.mit.edu	36	13	87127603	87127603	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015567	exon2	c.C1959T	p.G653G	.	.	.
STK24	8428	broad.mit.edu	36	13	97932531	97932531	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003576	exon3	c.G355A	p.A119T	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98347793	98347793	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130050	exon15	c.C1659T	p.S553S	.	.	.
C13orf31	144811	broad.mit.edu	36	13	43353171	43353171	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128303	exon2	c.50delA	p.Q17fs	.	.	.
DLK1	8788	broad.mit.edu	36	14	100270682	100270682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003836	exon5	c.G848A	p.R283H	.	.	.
DIO3	1735	broad.mit.edu	36	14	101097696	101097696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001362	exon1	c.G110T	p.R37M	.	.	.
DIO3	1735	broad.mit.edu	36	14	101098406	101098406	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001362	exon1	c.G820A	p.G274S	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101530892	101530892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon13	c.G3286A	p.A1096T	.	.	.
RAGE	5891	broad.mit.edu	36	14	101765413	101765413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014226	exon12	c.G1226A	p.R409H	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102422305	102422305	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145725	exon7	c.C597T	p.C199C	.	.	.
MARK3	4140	broad.mit.edu	36	14	102993302	102993302	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128919	exon6	c.G483T	p.Q161H	.	.	.
ZFYVE21	79038	broad.mit.edu	36	14	103263923	103263923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024071	exon3	c.G277A	p.V93M	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103278882	103278882	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015316	exon10	c.G1182T	p.Q394H	.	.	.
KIAA0284	283638	broad.mit.edu	36	14	104431198	104431198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015005	exon15	c.G4028A	p.R1343H	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104479564	104479564	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.C13269T	p.D4423D	.	.	.
OR4K2	390431	broad.mit.edu	36	14	19414986	19414986	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005501	exon1	c.T720C	p.C240C	.	.	.
OR4K5	79317	broad.mit.edu	36	14	19458872	19458872	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005483	exon1	c.C267T	p.H89H	.	.	.
TMEM55B	90809	broad.mit.edu	36	14	19997282	19997282	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144568	exon6	c.C613T	p.R205C	.	.	.
TPPP2	122664	broad.mit.edu	36	14	20569035	20569035	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173846	exon3	c.G198A	p.T66T	.	.	.
OR5AU1	390445	broad.mit.edu	36	14	20693650	20693650	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004731	exon1	c.C375A	p.S125S	.	.	.
SUPT16H	11198	broad.mit.edu	36	14	20904513	20904513	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007192	exon8	c.A971G	p.D324G	.	.	.
METTL3	56339	broad.mit.edu	36	14	21038538	21038538	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019852	exon6	c.C1243T	p.R415C	.	.	.
SALL2	6297	broad.mit.edu	36	14	21060868	21060868	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005407	exon2	c.G2834A	p.C945Y	.	.	.
LRP10	26020	broad.mit.edu	36	14	22414910	22414910	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014045	exon5	c.C913T	p.R305W	.	.	.
PRMT5	10419	broad.mit.edu	36	14	22462189	22462189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006109	exon13	c.G1396A	p.G466R	.	.	.
C14orf93	60686	broad.mit.edu	36	14	22537710	22537710	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130708	exon2	c.T363C	p.P121P	.	.	.
ACIN1	22985	broad.mit.edu	36	14	22619054	22619054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164814	exon6	c.C1504T	p.P502S	.	.	.
HOMEZ	57594	broad.mit.edu	36	14	22815843	22815843	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020834	exon2	c.C434T	p.A145V	.	.	.
SLC22A17	51310	broad.mit.edu	36	14	22891105	22891105	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020372	exon1	c.C159A	p.T53T	.	.	.
MYH7	4625	broad.mit.edu	36	14	22954770	22954770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000257	exon35	c.C5065T	p.R1689C	.	.	.
LRRC16B	90668	broad.mit.edu	36	14	23592790	23592790	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138360	exon2	c.G73A	p.V25M	.	.	.
CPNE6	9362	broad.mit.edu	36	14	23612700	23612700	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006032	exon3	c.C321T	p.L107L	.	.	.
FITM1	161247	broad.mit.edu	36	14	23670627	23670627	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203402	exon1	c.G15A	p.P5P	.	.	.
IPO4	79711	broad.mit.edu	36	14	23722906	23722906	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024658	exon19	c.C1908T	p.D636D	.	.	.
TM9SF1	10548	broad.mit.edu	36	14	23732117	23732117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014842	exon3	c.C544T	p.R182W	.	.	.
TM9SF1	10548	broad.mit.edu	36	14	23733848	23733848	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014842	exon2	c.G218A	p.R73H	.	.	.
C14orf21	161424	broad.mit.edu	36	14	23844068	23844068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174913	exon10	c.G1838A	p.R613Q	.	.	.
ADCY4	196883	broad.mit.edu	36	14	23863411	23863411	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198592	exon16	c.G1850A	p.S617N	.	.	.
RIPK3	11035	broad.mit.edu	36	14	23875950	23875950	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006871	exon9	c.G1317A	p.P439P	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23947345	23947345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025081	exon3	c.G629A	p.G210D	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28307520	28307520	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005249	exon1	c.G1284A	p.S428S	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29175264	29175264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon7	c.C1173T	p.D391D	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30712705	30712705	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015382	exon5	c.G662A	p.G221D	.	.	.
BAZ1A	11177	broad.mit.edu	36	14	34297765	34297765	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013448	exon25	c.C4282T	p.R1428X	.	.	.
NKX2-1	7080	broad.mit.edu	36	14	36056645	36056645	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003317	exon2	c.C705T	p.G235G	.	.	.
SSTR1	6751	broad.mit.edu	36	14	37748646	37748646	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001049	exon3	c.G301A	p.A101T	.	.	.
C14orf182	283551	broad.mit.edu	36	14	49542128	49542128	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012706	exon1	c.T140A	p.V47D	.	.	.
SOS2	6655	broad.mit.edu	36	14	49710974	49710974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006939	exon8	c.G1016A	p.R339H	.	.	.
MAP4K5	11183	broad.mit.edu	36	14	49959608	49959608	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006575	exon31	c.C2434T	p.R812C	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50631080	50631080	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052978	exon1	c.G328A	p.A110T	.	.	.
MAPK1IP1L	93487	broad.mit.edu	36	14	54599508	54599508	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144578	exon3	c.A438G	p.G146G	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	58019079	58019079	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014749	exon20	c.G2812A	p.A938T	.	.	.
DACT1	51339	broad.mit.edu	36	14	58183140	58183140	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079520	exon4	c.G1935A	p.S645S	 DACT1,large_intestine,rectum,Substitution - Missense,+1 	.	.
PPM1A	5494	broad.mit.edu	36	14	59819272	59819272	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021003	exon2	c.G98A	p.R33H	.	.	.
SIX4	51804	broad.mit.edu	36	14	60249956	60249956	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon3	c.T2268C	p.C756C	.	.	.
SIX4	51804	broad.mit.edu	36	14	60250365	60250365	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon3	c.T1859C	p.F620S	.	.	.
SNAPC1	6617	broad.mit.edu	36	14	61331425	61331425	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003082	exon10	c.A1078T	p.T360S	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62244563	62244563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139318	exon11	c.C2383T	p.L795F	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63592513	63592513	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon49	c.C9843A	p.P3281P	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63607226	63607226	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon52	c.A10542G	p.L3514L	.	.	.
MTHFD1	4522	broad.mit.edu	36	14	63977924	63977924	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005956	exon19	c.G1884T	p.E628D	.	.	.
HSPA2	3306	broad.mit.edu	36	14	64078223	64078223	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021979	exon1	c.G903A	p.T301T	.	.	.
SPTB	6710	broad.mit.edu	36	14	64307445	64307445	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024858	exon26	c.G5709A	p.A1903A	.	.	.
SPTB	6710	broad.mit.edu	36	14	64341454	64341454	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024858	exon2	c.C256T	p.R86C	.	.	.
GPHN	10243	broad.mit.edu	36	14	66648352	66648352	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024218	exon14	c.C1336T	p.R446X	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67314129	67314129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015346	exon25	c.C4874T	p.A1625V	.	.	.
ACTN1	87	broad.mit.edu	36	14	68411460	68411460	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130005	exon21	c.C2533T	p.R845C	.	.	.
GALNTL1	57452	broad.mit.edu	36	14	68884398	68884398	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020692	exon14	c.G1465A	p.A489T	.	.	.
SLC8A3	6547	broad.mit.edu	36	14	69703233	69703233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033262	exon2	c.C1660T	p.R554W	.	.	.
PCNX	22990	broad.mit.edu	36	14	70645172	70645172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014982	exon34	c.C6400T	p.R2134W	.	.	.
DPF3	8110	broad.mit.edu	36	14	72210720	72210720	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012074	exon8	c.C852T	p.C284C	.	.	.
ZFYVE1	53349	broad.mit.edu	36	14	72511282	72511282	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178441	exon7	c.C700T	p.R234W	.	.	.
ZFYVE1	53349	broad.mit.edu	36	14	72529762	72529762	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021260	exon4	c.C1045A	p.R349S	.	.	.
ZFYVE1	53349	broad.mit.edu	36	14	72534487	72534487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021260	exon3	c.C773T	p.A258V	.	.	.
PAPLN	89932	broad.mit.edu	36	14	72803209	72803209	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173462	exon24	c.C3336T	p.P1112P	.	.	.
NUMB	8650	broad.mit.edu	36	14	72829212	72829212	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005744	exon8	c.A433G	p.M145V	.	.	.
C14orf43	91748	broad.mit.edu	36	14	73273654	73273654	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001043318	exon3	c.C1549T	p.R517X	.	.	.
ABCD4	5826	broad.mit.edu	36	14	73831624	73831624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005050	exon7	c.G699A	p.A233A	.	.	.
ABCD4	5826	broad.mit.edu	36	14	73834405	73834405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005050	exon4	c.C406T	p.R136W	.	.	.
VRTN	55237	broad.mit.edu	36	14	73893761	73893761	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018228	exon2	c.G522A	p.W174X	.	.	.
DLST	1743	broad.mit.edu	36	14	74418413	74418413	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001933	exon1	c.C4T	p.L2L	.	.	.
MLH3	27030	broad.mit.edu	36	14	74586005	74586005	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040108	exon2	c.C107A	p.A36D	.	.	.
TTLL5	23093	broad.mit.edu	36	14	75217671	75217671	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015072	exon4	c.G212A	p.R71Q	.	.	.
NRXN3	9369	broad.mit.edu	36	14	79233789	79233789	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138970	exon4	c.G665A	p.R222H	.	.	.
SPATA7	55812	broad.mit.edu	36	14	87962342	87962342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040428	exon5	c.C290T	p.P97L	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88005100	88005100	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007039	exon18	c.G3309A	p.P1103P	.	.	.
FOXN3	1112	broad.mit.edu	36	14	88948258	88948258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085471	exon2	c.G316A	p.D106N	.	.	.
TTC7B	145567	broad.mit.edu	36	14	90077582	90077582	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010854	exon20	c.C2415T	p.G805G	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90849851	90849851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080414	exon15	c.G2062A	p.V688M	.	.	.
LGMN	5641	broad.mit.edu	36	14	92242716	92242716	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008530	exon13	c.C1056T	p.I352I	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93078653	93078653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon14	c.C1082T	p.A361V	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93158219	93158219	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon30	c.C4356T	p.S1452S	.	.	.
SERPINA3	12	broad.mit.edu	36	14	94150777	94150777	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085	exon2	c.C246T	p.T82T	.	.	.
C14orf49	161176	broad.mit.edu	36	14	94986157	94986157	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152592	exon7	c.C1313T	p.A438V	.	.	.
C14orf49	161176	broad.mit.edu	36	14	95003948	95003948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152592	exon2	c.C254T	p.A85V	.	.	.
BDKRB2	624	broad.mit.edu	36	14	95776742	95776742	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000623	exon3	c.C324T	p.C108C	.	.	.
VRK1	7443	broad.mit.edu	36	14	96369658	96369658	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003384	exon2	c.G97A	p.A33T	.	.	.
WARS	7453	broad.mit.edu	36	14	99897950	99897950	+	Missense_Mutation	SNP	G	A	A	rs2234522	byHapMap	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173701	exon3	c.C161T	p.A54V	.	.	.
TMEM55B	90809	broad.mit.edu	36	14	19998268	19998268	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144568	exon3	c.363delA	p.K121fs	.	.	.
C14orf106	55320	broad.mit.edu	36	14	44780991	44780991	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018353	exon4	c.1139delA	p.N380fs	.	.	.
NID2	22795	broad.mit.edu	36	14	51543118	51543118	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007361	exon20	c.3891delA	p.K1297fs	.	.	.
OR4M2	390538	broad.mit.edu	36	15	19870123	19870123	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004719	exon1	c.C184A	p.L62M	.	.	.
TUBGCP5	114791	broad.mit.edu	36	15	20415776	20415776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052903	exon16	c.G2293A	p.A765T	.	.	.
CYFIP1	23191	broad.mit.edu	36	15	20544593	20544593	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014608	exon26	c.C3039T	p.S1013S	.	.	.
CYFIP1	23191	broad.mit.edu	36	15	20550897	20550897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014608	exon29	c.C3328T	p.R1110C	.	.	.
MAGEL2	54551	broad.mit.edu	36	15	21440553	21440553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019066	exon1	c.C3430T	p.R1144W	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472890	22472890	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018958	exon1	c.G783A	p.A261A	.	.	.
GABRG3	2567	broad.mit.edu	36	15	25446244	25446244	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033223	exon8	c.C936T	p.Y312Y	.	.	.
HERC2	8924	broad.mit.edu	36	15	26139266	26139266	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon37	c.C5772T	p.Y1924Y	.	.	.
NDNL2	56160	broad.mit.edu	36	15	27348984	27348984	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138704	exon1	c.C218G	p.A73G	.	.	.
TJP1	7082	broad.mit.edu	36	15	27841165	27841165	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175610	exon7	c.C793T	p.R265W	.	.	.
FMN1	342184	broad.mit.edu	36	15	30878430	30878430	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103184	exon15	c.C3328T	p.R1110X	.	.	.
RYR3	6263	broad.mit.edu	36	15	31819449	31819449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon51	c.C7781T	p.A2594V	.	.	.
THBS1	7057	broad.mit.edu	36	15	37664994	37664994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003246	exon7	c.G1058A	p.C353Y	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38019013	38019013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013703	exon2	c.G160A	p.E54K	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38047228	38047228	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013703	exon9	c.C1409T	p.A470V	.	.	.
PLCB2	5330	broad.mit.edu	36	15	38377848	38377848	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004573	exon11	c.G1023A	p.S341S	.	.	.
ZFYVE19	84936	broad.mit.edu	36	15	38892385	38892385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077268	exon7	c.C1023T	p.P341P	.	.	.
VPS18	57617	broad.mit.edu	36	15	38982404	38982404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020857	exon5	c.G2495A	p.R832H	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39890398	39890398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014994	exon4	c.C232T	p.R78W	.	.	.
SPTBN5	51332	broad.mit.edu	36	15	39934354	39934354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016642	exon56	c.G9431A	p.R3144H	.	.	.
SPTBN5	51332	broad.mit.edu	36	15	39951792	39951792	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016642	exon27	c.G5060A	p.R1687Q	.	.	.
PLA2G4D	283748	broad.mit.edu	36	15	40151300	40151300	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178034	exon15	c.A1537G	p.R513G	.	.	.
GANC	2595	broad.mit.edu	36	15	40401505	40401505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198141	exon11	c.C1288T	p.R430C	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40528056	40528056	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022473	exon3	c.C2572T	p.R858X	.	.	.
TMEM62	80021	broad.mit.edu	36	15	41263804	41263804	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024956	exon14	c.C1660T	p.R554W	.	.	.
EPB42	2038	broad.mit.edu	36	15	41288852	41288852	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114134	exon6	c.C744T	p.S248S	.	.	.
TGM5	9333	broad.mit.edu	36	15	41332263	41332263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004245	exon5	c.C602T	p.A201V	.	.	.
TUBGCP4	27229	broad.mit.edu	36	15	41477575	41477575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014444	exon13	c.C1324T	p.R442W	.	.	.
PPIP5K1	9677	broad.mit.edu	36	15	41660765	41660765	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130859	exon8	c.G891A	p.L297L	.	.	.
CKMT1B	1159	broad.mit.edu	36	15	41678684	41678684	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020990	exon10	c.A1175G	p.Y392C	.	.	.
ELL3	80237	broad.mit.edu	36	15	41855570	41855570	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025165	exon3	c.C240T	p.G80G	.	.	.
DUOXA1	90527	broad.mit.edu	36	15	43199685	43199685	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144565	exon8	c.C680T	p.A227V	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43224419	43224419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017434	exon19	c.C2171T	p.A724V	.	.	.
FBN1	2200	broad.mit.edu	36	15	46532056	46532056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon45	c.G5540A	p.C1847Y	.	.	.
FBN1	2200	broad.mit.edu	36	15	46563387	46563387	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon31	c.A3758T	p.Q1253L	.	.	.
FBN1	2200	broad.mit.edu	36	15	46583417	46583417	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon17	c.C1972T	p.R658W	.	.	.
COPS2	9318	broad.mit.edu	36	15	47207571	47207571	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004236	exon13	c.C1200T	p.G400G	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	47999805	47999805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024837	exon18	c.C1853T	p.A618V	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49617077	49617077	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon11	c.C1517A	p.P506H	.	.	.
LEO1	123169	broad.mit.edu	36	15	50031349	50031349	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138792	exon9	c.G1595A	p.R532H	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50319322	50319322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018728	exon21	c.C2603T	p.A868V	.	.	.
WDR72	256764	broad.mit.edu	36	15	51802360	51802360	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182758	exon3	c.C191T	p.S64L	.	.	.
RAB27A	5873	broad.mit.edu	36	15	53309942	53309942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004580	exon3	c.G188A	p.G63D	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53996187	53996187	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198400	exon1	c.C135T	p.N45N	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55717199	55717199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152451	exon9	c.G948A	p.L316L	.	.	.
ALDH1A2	8854	broad.mit.edu	36	15	56041572	56041572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170697	exon8	c.G893A	p.R298Q	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60005002	60005002	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017684	exon51	c.C6425T	p.T2142M	.	.	.
TLN2	83660	broad.mit.edu	36	15	60795943	60795943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015059	exon20	c.G2756A	p.R919Q	.	.	.
DAPK2	23604	broad.mit.edu	36	15	62062928	62062928	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014326	exon3	c.G171A	p.R57R	.	.	.
TRIP4	9325	broad.mit.edu	36	15	62485645	62485645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016213	exon6	c.G761A	p.R254Q	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	63001185	63001185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182703	exon4	c.G280A	p.A94T	.	.	.
DPP8	54878	broad.mit.edu	36	15	63580098	63580098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017743	exon4	c.G445A	p.G149R	.	.	.
SLC24A1	9187	broad.mit.edu	36	15	63704891	63704891	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004727	exon2	c.C1420T	p.R474X	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63770249	63770249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144823	exon23	c.G3734A	p.R1245H	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65145613	65145613	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005902	exon1	c.C67T	p.Q23X	.	.	.
CORO2B	10391	broad.mit.edu	36	15	66724590	66724590	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006091	exon2	c.G53A	p.R18Q	.	.	.
ANP32A	8125	broad.mit.edu	36	15	66866822	66866822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006305	exon3	c.G311A	p.S104N	.	.	.
TLE3	7090	broad.mit.edu	36	15	68134600	68134600	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020908	exon15	c.G1393A	p.A465T	.	.	.
NR2E3	10002	broad.mit.edu	36	15	69892893	69892893	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014249	exon6	c.C858A	p.A286A	.	.	.
ARIH1	25820	broad.mit.edu	36	15	70660252	70660252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005744	exon12	c.C1342T	p.H448Y	.	.	.
HCN4	10021	broad.mit.edu	36	15	71409056	71409056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005477	exon4	c.G1501A	p.V501M	.	.	.
CYP1A1	1543	broad.mit.edu	36	15	72802341	72802341	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000499	exon2	c.C151T	p.H51Y	.	.	.
LMAN1L	79748	broad.mit.edu	36	15	72895675	72895675	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021819	exon2	c.G300A	p.T100T	.	.	.
NEIL1	79661	broad.mit.edu	36	15	73428699	73428699	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024608	exon2	c.G400T	p.G134W	.	.	.
MAN2C1	4123	broad.mit.edu	36	15	73441045	73441045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006715	exon10	c.C1171T	p.R391C	.	.	.
SGK269	79834	broad.mit.edu	36	15	75260653	75260653	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024776	exon3	c.G671T	p.R224L	.	.	.
TBC1D2B	23102	broad.mit.edu	36	15	76077688	76077688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144572	exon13	c.C2761T	p.R921C	.	.	.
TBC1D2B	23102	broad.mit.edu	36	15	76082842	76082842	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144572	exon11	c.C2434T	p.R812W	.	.	.
TMED3	23423	broad.mit.edu	36	15	77401390	77401390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007364	exon3	c.G433A	p.V145M	.	.	.
ST20	400410	broad.mit.edu	36	15	77978384	77978384	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100879	exon3	c.G184A	p.G62S	.	.	.
FAH	2184	broad.mit.edu	36	15	78260474	78260474	+	Silent	SNP	G	A	A	rs35033541	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000137	exon13	c.G1098A	p.S366S	.	.	.
MEX3B	84206	broad.mit.edu	36	15	80123363	80123363	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032246	exon2	c.C903T	p.F301F	.	.	.
AP3B2	8120	broad.mit.edu	36	15	81132668	81132668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004644	exon15	c.C1737T	p.R579R	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81299104	81299104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080435	exon10	c.C2192T	p.A731V	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81299263	81299263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080435	exon10	c.C2351T	p.A784V	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83128843	83128843	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014630	exon4	c.G1933A	p.V645I	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83201123	83201123	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020778	exon6	c.C2756A	p.P919H	.	.	.
MFGE8	4240	broad.mit.edu	36	15	87254137	87254137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114614	exon2	c.G95A	p.C32Y	.	.	.
RLBP1	6017	broad.mit.edu	36	15	87561458	87561458	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000326	exon5	c.G243A	p.A81A	.	.	.
POLG	5428	broad.mit.edu	36	15	87662814	87662814	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126131	exon21	c.C3444T	p.R1148R	.	.	.
POLG	5428	broad.mit.edu	36	15	87671554	87671554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126131	exon7	c.G1281A	p.M427I	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87945739	87945739	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152259	exon11	c.C2263T	p.R755C	.	.	.
AP3S2	10239	broad.mit.edu	36	15	88255005	88255005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182616	exon2	c.G143A	p.S48N	.	.	.
IDH2	3418	broad.mit.edu	36	15	88429144	88429144	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002168	exon10	c.G1179A	p.R393R	.	.	.
TTLL13	440307	broad.mit.edu	36	15	88602490	88602490	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029964	exon9	c.G1152A	p.K384K	.	.	.
FES	2242	broad.mit.edu	36	15	89234083	89234083	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143783	exon6	c.A762G	p.S254S	.	.	.
CHD2	1106	broad.mit.edu	36	15	91329840	91329840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001271	exon26	c.C3346T	p.R1116C	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97295743	97295743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000875	exon16	c.C3124T	p.R1042C	.	.	.
SYNM	23336	broad.mit.edu	36	15	97489171	97489171	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015286	exon4	c.A3082T	p.R1028X	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99423908	99423908	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon32	c.G5743A	p.V1915I	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99593107	99593107	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014918	exon2	c.C519T	p.D173D	.	.	.
FURIN	5045	broad.mit.edu	36	15	89224111	89224112	+	Frame_Shift_Del	DEL	AT	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	AT	AT	AT	-	AT	AT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002569	exon12	c.1269_1270del	p.423_424del	.	.	.
PALB2	79728	broad.mit.edu	36	16	23540270	23540271	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024675	exon10	c.3027_3028insC	p.P1009fs	.	.	.
TEKT5	146279	broad.mit.edu	36	16	10637161	10637161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144674	exon6	c.G1202A	p.R401H	.	.	.
CIITA	4261	broad.mit.edu	36	16	10908896	10908896	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000246	exon11	c.C2046T	p.S682S	.	.	.
CIITA	4261	broad.mit.edu	36	16	10919859	10919859	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000246	exon16	c.C3124T	p.L1042F	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	11125165	11125165	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015226	exon20	c.G2334A	p.A778A	.	.	.
CACNA1H	8912	broad.mit.edu	36	16	1208394	1208394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021098	exon33	c.G5629A	p.D1877N	.	.	.
TPSD1	23430	broad.mit.edu	36	16	1246326	1246326	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012217	exon1	c.C44T	p.A15V	.	.	.
CPPED1	55313	broad.mit.edu	36	16	12706055	12706055	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018340	exon3	c.C642T	p.D214D	.	.	.
NOMO1	23420	broad.mit.edu	36	16	14876514	14876514	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014287	exon19	c.C2175T	p.G725G	.	.	.
MYH11	4629	broad.mit.edu	36	16	15710191	15710191	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040113	exon42	c.C5816A	p.P1939H	.	.	.
IFT140	9742	broad.mit.edu	36	16	1574277	1574277	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014714	exon11	c.C1301T	p.T434M	.	.	.
MYH11	4629	broad.mit.edu	36	16	15783784	15783784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon7	c.G706A	p.G236S	.	.	.
MYH11	4629	broad.mit.edu	36	16	15839297	15839297	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon2	c.T314C	p.L105P	.	.	.
ABCC6	368	broad.mit.edu	36	16	16159116	16159116	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171	exon27	c.G3787A	p.G1263R	.	.	.
SMG1	23049	broad.mit.edu	36	16	18748405	18748405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015092	exon54	c.G9307A	p.G3103R	.	.	.
C16orf62	57020	broad.mit.edu	36	16	19570840	19570840	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020314	exon26	c.G2415A	p.A805A	.	.	.
GPR139	124274	broad.mit.edu	36	16	19950749	19950749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002911	exon2	c.C871T	p.R291W	.	.	.
GP2	2813	broad.mit.edu	36	16	20237203	20237203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007242	exon6	c.C617T	p.A206V	.	.	.
UMOD	7369	broad.mit.edu	36	16	20265033	20265033	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003361	exon5	c.C1098A	p.C366X	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20882852	20882852	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon53	c.G9855A	p.T3285T	.	.	.
ZP2	7783	broad.mit.edu	36	16	21118639	21118639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon15	c.C1756T	p.H586Y	.	.	.
ZP2	7783	broad.mit.edu	36	16	21130205	21130205	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon2	c.G75A	p.S25S	.	.	.
TRAF7	84231	broad.mit.edu	36	16	2161295	2161295	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032271	exon6	c.G378A	p.S126S	.	.	.
MLST8	64223	broad.mit.edu	36	16	2196584	2196584	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199174	exon4	c.G267A	p.A89A	.	.	.
ABCA3	21	broad.mit.edu	36	16	2307377	2307377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001089	exon10	c.G1019A	p.R340H	.	.	.
SCNN1G	6340	broad.mit.edu	36	16	23108208	23108208	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039	exon3	c.C333T	p.R111R	.	.	.
COG7	91949	broad.mit.edu	36	16	23364741	23364741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153603	exon2	c.G212A	p.R71H	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24712428	24712428	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014494	exon7	c.G3309A	p.T1103T	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27399956	27399956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001520	exon27	c.G4141A	p.A1381T	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2756346	2756346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016333	exon11	c.C5816T	p.T1939M	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2759143	2759143	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016333	exon12	c.T7878C	p.S2626S	.	.	.
XPO6	23214	broad.mit.edu	36	16	28030692	28030692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015171	exon17	c.G2288A	p.R763H	.	.	.
ATP2A1	487	broad.mit.edu	36	16	28816916	28816916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004320	exon13	c.G1514A	p.R505Q	.	.	.
ATP2A1	487	broad.mit.edu	36	16	28820838	28820838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004320	exon16	c.G2254A	p.A752T	.	.	.
SPNS1	83985	broad.mit.edu	36	16	28900342	28900342	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142449	exon5	c.G648A	p.V216V	.	.	.
SPNS1	83985	broad.mit.edu	36	16	28901345	28901345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142449	exon6	c.G911A	p.R304H	.	.	.
PAQR4	124222	broad.mit.edu	36	16	2961660	2961660	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152341	exon3	c.G532A	p.G178R	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29797162	29797162	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114100	exon8	c.C1317T	p.C439C	.	.	.
TAOK2	9344	broad.mit.edu	36	16	29900695	29900695	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004783	exon10	c.G764A	p.R255Q	.	.	.
TAOK2	9344	broad.mit.edu	36	16	29901702	29901702	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004783	exon11	c.C978T	p.A326A	.	.	.
HIRIP3	8479	broad.mit.edu	36	16	29912177	29912177	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003609	exon7	c.G1523A	p.R508H	.	.	.
SEPT1	1731	broad.mit.edu	36	16	30298294	30298294	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052838	exon9	c.G723A	p.P241P	.	.	.
SEPT1	1731	broad.mit.edu	36	16	30299967	30299967	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052838	exon7	c.C540A	p.T180T	.	.	.
SEPT1	1731	broad.mit.edu	36	16	30300162	30300162	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052838	exon6	c.G439T	p.G147W	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30393052	30393052	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114380	exon2	c.C96G	p.G32G	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30652517	30652517	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon29	c.G6391A	p.D2131N	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30658310	30658310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon34	c.G9448A	p.G3150R	.	.	.
RNF40	9810	broad.mit.edu	36	16	30687160	30687160	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014771	exon13	c.C1787G	p.A596G	.	.	.
ZNF629	23361	broad.mit.edu	36	16	30702641	30702641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080417	exon3	c.G509A	p.R170H	.	.	.
CTF1	1489	broad.mit.edu	36	16	30818313	30818313	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142544	exon2	c.G99A	p.A33A	.	.	.
STX4	6810	broad.mit.edu	36	16	30956815	30956815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004604	exon6	c.G446A	p.R149Q	.	.	.
ZNF205	7755	broad.mit.edu	36	16	3109812	3109812	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042428	exon7	c.C1150T	p.R384C	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31240432	31240432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000632	exon16	c.G1985A	p.R662Q	.	.	.
ITGAX	3687	broad.mit.edu	36	16	31282141	31282141	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000887	exon14	c.C1655T	p.A552V	.	.	.
ITGAX	3687	broad.mit.edu	36	16	31299112	31299112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000887	exon27	c.C3085T	p.R1029W	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31331973	31331973	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005353	exon16	c.C1901T	p.A634V	.	.	.
SLC5A2	6524	broad.mit.edu	36	16	31407732	31407732	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003041	exon11	c.G1311A	p.S437S	.	.	.
ZNF174	7727	broad.mit.edu	36	16	3398609	3398609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003450	exon3	c.C913T	p.R305W	.	.	.
NAT15	79903	broad.mit.edu	36	16	3466274	3466274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083600	exon2	c.C46T	p.R16C	.	.	.
SLX4	84464	broad.mit.edu	36	16	3580825	3580825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.C2815T	p.R939W	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3721318	3721318	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon30	c.G5048A	p.R1683H	.	.	.
SHCBP1	79801	broad.mit.edu	36	16	45186970	45186970	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024745	exon10	c.G1459A	p.A487T	.	.	.
VPS35	55737	broad.mit.edu	36	16	45270445	45270445	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018206	exon6	c.C631T	p.R211X	.	.	.
GLYR1	84656	broad.mit.edu	36	16	4802114	4802114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032569	exon13	c.C1256T	p.A419V	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48228694	48228694	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015069	exon5	c.G1870A	p.A624T	.	.	.
PPL	5493	broad.mit.edu	36	16	4880288	4880288	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002705	exon18	c.C2211T	p.R737R	.	.	.
PPL	5493	broad.mit.edu	36	16	4883576	4883576	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002705	exon13	c.C1459T	p.R487W	.	.	.
CHD9	80205	broad.mit.edu	36	16	51859453	51859453	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon22	c.G4631A	p.R1544Q	.	.	.
CHD9	80205	broad.mit.edu	36	16	51895585	51895585	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon31	c.C6166A	p.P2056T	.	.	.
RBL2	5934	broad.mit.edu	36	16	52081569	52081569	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005611	exon22	c.A3276G	p.I1092M	.	.	.
RHBDF1	64285	broad.mit.edu	36	16	54721	54721	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022450	exon3	c.C224T	p.T75M	.	.	.
OGFOD1	55239	broad.mit.edu	36	16	55059409	55059409	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018233	exon8	c.T878A	p.I293N	.	.	.
NUP93	9688	broad.mit.edu	36	16	55349971	55349971	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014669	exon3	c.G200A	p.R67Q	.	.	.
CPNE2	221184	broad.mit.edu	36	16	55728688	55728688	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152727	exon14	c.C1295T	p.T432M	.	.	.
FAM192A	80011	broad.mit.edu	36	16	55745778	55745778	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024946	exon7	c.C690T	p.S230S	.	.	.
ARL2BP	23568	broad.mit.edu	36	16	55840056	55840056	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012106	exon3	c.C207T	p.Y69Y	.	.	.
CIAPIN1	57019	broad.mit.edu	36	16	56032222	56032222	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020313	exon2	c.C120T	p.G40G	.	.	.
GPR56	9289	broad.mit.edu	36	16	56246874	56246874	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145774	exon7	c.G831A	p.T277T	.	.	.
GPR56	9289	broad.mit.edu	36	16	56248793	56248793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145774	exon11	c.C1175T	p.S392L	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56488890	56488890	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001297	exon31	c.A3154G	p.T1052A	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56506665	56506665	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001297	exon23	c.C2293A	p.R765S	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57116751	57116751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016284	exon46	c.C6617A	p.P2206H	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57135260	57135260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon31	c.G4186A	p.A1396T	.	.	.
CDH8	1006	broad.mit.edu	36	16	60408915	60408915	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001796	exon7	c.C1246T	p.R416C	.	.	.
CES2	8824	broad.mit.edu	36	16	65531899	65531899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198061	exon5	c.C808T	p.R270C	.	.	.
ELMO3	79767	broad.mit.edu	36	16	65793409	65793409	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024712	exon12	c.G1238A	p.R413H	.	.	.
SLC9A5	6553	broad.mit.edu	36	16	65844176	65844176	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004594	exon2	c.G418A	p.V140M	.	.	.
SLC7A6OS	84138	broad.mit.edu	36	16	66902012	66902012	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032178	exon2	c.A198G	p.E66E	.	.	.
WDR24	84219	broad.mit.edu	36	16	679516	679516	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032259	exon1	c.C126T	p.V42V	.	.	.
FUK	197258	broad.mit.edu	36	16	69060708	69060708	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145059	exon10	c.C936T	p.R312R	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69470825	69470825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon62	c.C10430T	p.T3477M	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69533121	69533121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon43	c.C6769T	p.R2257W	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69546935	69546935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon40	c.G6157A	p.V2053I	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69551093	69551093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon39	c.C6097T	p.R2033W	.	.	.
ZNF19	7567	broad.mit.edu	36	16	70067532	70067532	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006961	exon6	c.A419G	p.D140G	.	.	.
MARVELD3	91862	broad.mit.edu	36	16	70231935	70231935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017967	exon3	c.G737A	p.G246D	.	.	.
DHODH	1723	broad.mit.edu	36	16	70603618	70603618	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001361	exon2	c.C190A	p.L64M	.	.	.
HP	3240	broad.mit.edu	36	16	70652182	70652182	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126102	exon5	c.G936A	p.A312A	.	.	.
DHX38	9785	broad.mit.edu	36	16	70700844	70700844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014003	exon25	c.C3411T	p.D1137D	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71385525	71385525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon9	c.G8557A	p.A2853T	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71481240	71481240	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon4	c.G3339A	p.Q1113Q	.	.	.
NARFL	64428	broad.mit.edu	36	16	723356	723356	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022493	exon7	c.C766T	p.P256S	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7323011	7323011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145893	exon1	c.C8T	p.A3V	.	.	.
BCAR1	9564	broad.mit.edu	36	16	73826429	73826429	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170716	exon5	c.C1923T	p.P641P	.	.	.
TMEM231	79583	broad.mit.edu	36	16	74134015	74134015	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077416	exon4	c.A737G	p.Y246C	.	.	.
KARS	3735	broad.mit.edu	36	16	74220912	74220912	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130089	exon13	c.C1537T	p.R513C	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75131204	75131204	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033401	exon20	c.T3307C	p.F1103L	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79790066	79790066	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon7	c.G1245A	p.Q415Q	.	.	.
GAN	8139	broad.mit.edu	36	16	79945671	79945671	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022041	exon3	c.A443G	p.H148R	.	.	.
NECAB2	54550	broad.mit.edu	36	16	82569600	82569600	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019065	exon3	c.G277A	p.V93I	.	.	.
LRRC50	123872	broad.mit.edu	36	16	82756899	82756899	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178452	exon7	c.G873A	p.A291A	.	.	.
KCNG4	93107	broad.mit.edu	36	16	82828176	82828176	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172347	exon2	c.C417T	p.C139C	.	.	.
USP10	9100	broad.mit.edu	36	16	83336054	83336054	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005153	exon4	c.C466T	p.P156S	.	.	.
CRISPLD2	83716	broad.mit.edu	36	16	83441685	83441685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031476	exon5	c.C503T	p.A168V	.	.	.
IRF8	3394	broad.mit.edu	36	16	84511269	84511269	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002163	exon8	c.C1042T	p.L348L	.	.	.
MTHFSD	64779	broad.mit.edu	36	16	85123387	85123387	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022764	exon8	c.G880T	p.G294C	.	.	.
FBXO31	79791	broad.mit.edu	36	16	85922460	85922460	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024735	exon9	c.G1555A	p.A519T	.	.	.
FBXO31	79791	broad.mit.edu	36	16	85922527	85922527	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024735	exon9	c.C1488T	p.F496F	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87224399	87224399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144604	exon17	c.C2572T	p.R858W	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87874479	87874479	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013275	exon9	c.C5972A	p.P1991Q	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87876764	87876764	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013275	exon9	c.G3687A	p.T1229T	.	.	.
DPEP1	1800	broad.mit.edu	36	16	88224321	88224321	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004413	exon2	c.T2C	p.M1T	.	.	.
ZNF276	92822	broad.mit.edu	36	16	88327866	88327866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113525	exon9	c.C1393T	p.R465W	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9939856	9939856	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134408	exon3	c.G468A	p.T156T	.	.	.
ITGAX	3687	broad.mit.edu	36	16	31281487	31281487	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000887	exon12	c.1271delC	p.A424fs	.	.	.
PRDM7	11105	broad.mit.edu	36	16	88652237	88652237	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098173	exon10	c.1440delA	p.K480fs	.	.	.
PLSCR3	57048	broad.mit.edu	36	17	7237865	7237866	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020360	exon3	c.22_23insC	p.K8fs	.	.	.
MYH8	4626	broad.mit.edu	36	17	10243603	10243603	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon28	c.C3844T	p.R1282C	.	.	.
MYH2	4620	broad.mit.edu	36	17	10370820	10370820	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100112	exon30	c.G4008A	p.A1336A	.	.	.
MYH3	4621	broad.mit.edu	36	17	10496576	10496576	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002470	exon3	c.C234T	p.Y78Y	.	.	.
PIRT	644139	broad.mit.edu	36	17	10669519	10669519	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101387	exon2	c.G169A	p.V57I	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11534462	11534462	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon20	c.G4598A	p.R1533Q	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11591654	11591654	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon32	c.C6456T	p.G2152G	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11806154	11806154	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004662	exon14	c.G2025T	p.T675T	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11973206	11973206	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003010	exon9	c.C917A	p.P306H	.	.	.
ELAC2	60528	broad.mit.edu	36	17	12837022	12837022	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165962	exon23	c.C2199T	p.G733G	.	.	.
CDRT15	146822	broad.mit.edu	36	17	14080721	14080721	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007530	exon1	c.T155C	p.L52P	.	.	.
HS3ST3B1	9953	broad.mit.edu	36	17	14189118	14189118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006041	exon2	c.G603A	p.T201T	.	.	.
RILP	83547	broad.mit.edu	36	17	1497958	1497958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031430	exon6	c.G865A	p.A289T	.	.	.
TEKT3	64518	broad.mit.edu	36	17	15172073	15172073	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031898	exon4	c.C624T	p.I208I	.	.	.
RAI1	10743	broad.mit.edu	36	17	17640160	17640160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030665	exon3	c.G3173A	p.R1058H	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17980663	17980663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016239	exon14	c.G4717A	p.A1573T	.	.	.
FLII	2314	broad.mit.edu	36	17	18089265	18089265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002018	exon30	c.G3722A	p.R1241Q	.	.	.
FLII	2314	broad.mit.edu	36	17	18098169	18098169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002018	exon7	c.C628T	p.R210C	.	.	.
TOP3A	7156	broad.mit.edu	36	17	18135053	18135053	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004618	exon12	c.G1295A	p.R432Q	.	.	.
MNT	4335	broad.mit.edu	36	17	2237292	2237292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020310	exon6	c.G1402A	p.A468T	.	.	.
METT10D	79066	broad.mit.edu	36	17	2270829	2270829	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024086	exon9	c.G1008A	p.A336A	.	.	.
NOS2	4843	broad.mit.edu	36	17	23117672	23117672	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000625	exon19	c.C2237T	p.P746L	.	.	.
NOS2	4843	broad.mit.edu	36	17	23130173	23130173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000625	exon10	c.C1041T	p.Y347Y	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23985914	23985914	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014680	exon16	c.C2818T	p.R940C	.	.	.
SUPT6H	6830	broad.mit.edu	36	17	24038479	24038479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003170	exon23	c.G2869A	p.A957T	.	.	.
SUPT6H	6830	broad.mit.edu	36	17	24049088	24049088	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003170	exon32	c.A4361C	p.K1454T	.	.	.
SUPT6H	6830	broad.mit.edu	36	17	24052765	24052765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003170	exon37	c.C5176T	p.R1726W	.	.	.
TRAF4	9618	broad.mit.edu	36	17	24099036	24099036	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004295	exon3	c.C244T	p.R82C	.	.	.
C17orf63	55731	broad.mit.edu	36	17	24109816	24109816	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077498	exon3	c.A1287G	p.R429R	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25344458	25344458	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145053	exon5	c.A749C	p.K250T	.	.	.
KIAA0664	23277	broad.mit.edu	36	17	2541684	2541684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015229	exon25	c.G3715A	p.V1239I	.	.	.
KIAA0664	23277	broad.mit.edu	36	17	2544553	2544553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015229	exon17	c.C2791T	p.R931W	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26244981	26244981	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024857	exon21	c.C4984A	p.L1662I	.	.	.
ADAP2	55803	broad.mit.edu	36	17	26307393	26307393	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018404	exon10	c.C891T	p.F297F	.	.	.
C17orf97	400566	broad.mit.edu	36	17	263510	263510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013672	exon2	c.G560A	p.R187H	.	.	.
RAB11FIP4	84440	broad.mit.edu	36	17	26872439	26872439	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032932	exon5	c.C699T	p.C233C	.	.	.
CDK5R1	8851	broad.mit.edu	36	17	27839164	27839164	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003885	exon2	c.C413T	p.T138M	.	.	.
MYO1D	4642	broad.mit.edu	36	17	28072203	28072203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015194	exon15	c.C1864T	p.R622C	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30714069	30714069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001104589	exon3	c.C871T	p.R291C	.	.	.
MYO19	80179	broad.mit.edu	36	17	31930890	31930890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163735	exon24	c.G2270A	p.R757H	.	.	.
SYNRG	11276	broad.mit.edu	36	17	33010627	33010627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007247	exon8	c.G826A	p.V276M	.	.	.
MRPL45	84311	broad.mit.edu	36	17	33731694	33731694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032351	exon7	c.G819T	p.K273N	.	.	.
PIP4K2B	8396	broad.mit.edu	36	17	34190301	34190301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003559	exon4	c.G437A	p.R146H	.	.	.
TRPV1	7442	broad.mit.edu	36	17	3440402	3440402	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018727	exon5	c.G638A	p.R213H	.	.	.
CACNB1	782	broad.mit.edu	36	17	34593534	34593534	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000723	exon11	c.G1008A	p.S336S	.	.	.
CDK12	51755	broad.mit.edu	36	17	34940519	34940519	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016507	exon14	c.C3897T	p.A1299A	.	.	.
CDK12	51755	broad.mit.edu	36	17	34940888	34940888	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016507	exon14	c.G4266T	p.K1422N	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35120147	35120147	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005862	exon10	c.T698C	p.I233T	.	.	.
GRB7	2886	broad.mit.edu	36	17	35153210	35153210	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005310	exon6	c.C624T	p.L208L	.	.	.
NR1D1	9572	broad.mit.edu	36	17	35504722	35504722	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021724	exon6	c.A1426G	p.T476A	.	.	.
NR1D1	9572	broad.mit.edu	36	17	35505565	35505565	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021724	exon5	c.C906T	p.Y302Y	.	.	.
KRTAP3-1	83896	broad.mit.edu	36	17	36418635	36418635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031958	exon1	c.C218T	p.P73L	.	.	.
KRTAP4-1	85285	broad.mit.edu	36	17	36594236	36594236	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033060	exon2	c.C340T	p.R114C	.	.	.
KRT33B	3884	broad.mit.edu	36	17	36775316	36775316	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002279	exon4	c.C604T	p.R202C	.	.	.
KRT31	3881	broad.mit.edu	36	17	36806298	36806298	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002277	exon3	c.G488A	p.R163H	.	.	.
KRT36	8689	broad.mit.edu	36	17	36899256	36899256	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003771	exon1	c.C387T	p.Y129Y	.	.	.
KRT9	3857	broad.mit.edu	36	17	36977519	36977519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000226	exon7	c.C1404T	p.S468S	.	.	.
CAMKK1	84254	broad.mit.edu	36	17	3722614	3722614	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032294	exon12	c.C1107T	p.P369P	.	.	.
ACLY	47	broad.mit.edu	36	17	37323624	37323624	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198830	exon2	c.C29T	p.T10M	.	.	.
PTRF	284119	broad.mit.edu	36	17	37810368	37810368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012232	exon2	c.G1036A	p.A346T	.	.	.
PTRF	284119	broad.mit.edu	36	17	37810752	37810752	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012232	exon2	c.G652A	p.A218T	.	.	.
COASY	80347	broad.mit.edu	36	17	37971244	37971244	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042529	exon9	c.C1527T	p.A509A	.	.	.
TUBG1	7283	broad.mit.edu	36	17	38020407	38020407	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001070	exon11	c.G1178A	p.R393H	.	.	.
TUBG2	27175	broad.mit.edu	36	17	38071930	38071930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016437	exon10	c.G1060A	p.A354T	.	.	.
BECN1	8678	broad.mit.edu	36	17	38219533	38219533	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003766	exon10	c.G1000A	p.G334R	.	.	.
AOC2	314	broad.mit.edu	36	17	38251281	38251281	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001158	exon1	c.C1112T	p.P371L	.	.	.
DHX8	1659	broad.mit.edu	36	17	38926387	38926387	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004941	exon7	c.T912C	p.G304G	.	.	.
ETV4	2118	broad.mit.edu	36	17	38963011	38963011	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001986	exon9	c.C876T	p.D292D	.	.	.
MPP2	4355	broad.mit.edu	36	17	39310861	39310861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005374	exon13	c.G1499A	p.R500Q	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3938732	3938732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015113	exon13	c.G2230A	p.A744T	.	.	.
SLC4A1	6521	broad.mit.edu	36	17	39690408	39690408	+	Missense_Mutation	SNP	C	T	T	rs28931584	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000342	exon13	c.G1462A	p.V488M	.	.	.
FZD2	2535	broad.mit.edu	36	17	39991927	39991927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001466	exon1	c.G1345A	p.G449S	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4024060	4024060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016376	exon20	c.G2819A	p.R940H	.	.	.
FMNL1	752	broad.mit.edu	36	17	40674784	40674784	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005892	exon14	c.G1585T	p.D529Y	.	.	.
C17orf46	124783	broad.mit.edu	36	17	40688760	40688760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152343	exon4	c.C572T	p.P191L	.	.	.
C17orf46	124783	broad.mit.edu	36	17	40688840	40688840	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152343	exon4	c.C492A	p.I164I	.	.	.
GOSR2	9570	broad.mit.edu	36	17	42367620	42367620	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012511	exon5	c.C563T	p.T188M	.	.	.
NPEPPS	9520	broad.mit.edu	36	17	42978284	42978284	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006310	exon2	c.C266T	p.A89V	.	.	.
NPEPPS	9520	broad.mit.edu	36	17	43050736	43050736	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006310	exon20	c.C2317T	p.Q773X	.	.	.
SP6	80320	broad.mit.edu	36	17	43280740	43280740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199262	exon2	c.G55A	p.A19T	.	.	.
NFE2L1	4779	broad.mit.edu	36	17	43489845	43489845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003204	exon5	c.G954A	p.M318I	.	.	.
HOXB1	3211	broad.mit.edu	36	17	43963005	43963005	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002144	exon1	c.C261T	p.A87A	.	.	.
SPOP	8405	broad.mit.edu	36	17	45034312	45034312	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007229	exon10	c.C894T	p.S298S	.	.	.
ITGA3	3675	broad.mit.edu	36	17	45506821	45506821	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002204	exon10	c.G1393A	p.V465I	.	.	.
SAMD14	201191	broad.mit.edu	36	17	45548257	45548257	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174920	exon6	c.C598T	p.R200C	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45623237	45623237	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000088	exon33	c.C2283T	p.G761G	.	.	.
CXCL16	58191	broad.mit.edu	36	17	4585149	4585149	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100812	exon4	c.G762A	p.P254P	.	.	.
RSAD1	55316	broad.mit.edu	36	17	45915823	45915823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018346	exon6	c.G1028A	p.R343H	.	.	.
EPN3	55040	broad.mit.edu	36	17	45973666	45973666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017957	exon8	c.C1327T	p.P443S	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46049871	46049871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198382	exon28	c.G5026A	p.A1676T	.	.	.
SPAG9	9043	broad.mit.edu	36	17	46403171	46403171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003971	exon28	c.C3704T	p.T1235M	.	.	.
CHRNE	1145	broad.mit.edu	36	17	4742908	4742908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000080	exon12	c.G1384A	p.A462T	.	.	.
ENO3	2027	broad.mit.edu	36	17	4800125	4800125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053013	exon9	c.G1030A	p.V344I	.	.	.
CAMTA2	23125	broad.mit.edu	36	17	4816794	4816794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015099	exon15	c.G2497T	p.D833Y	.	.	.
KIF1C	10749	broad.mit.edu	36	17	4864610	4864610	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006612	exon20	c.C1850T	p.P617L	.	.	.
KIF1C	10749	broad.mit.edu	36	17	4866650	4866650	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006612	exon22	c.G2550A	p.Q850Q	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51786391	51786391	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153228	exon5	c.C595T	p.R199X	.	.	.
SCPEP1	59342	broad.mit.edu	36	17	52434446	52434446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021626	exon12	c.G1201A	p.A401T	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53743370	53743370	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004758	exon19	c.C3285G	p.S1095R	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5374706	5374706	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033007	exon11	c.G3249A	p.T1083T	.	.	.
SUPT4H1	6827	broad.mit.edu	36	17	53779936	53779936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003168	exon3	c.C185T	p.A62V	.	.	.
MTMR4	9110	broad.mit.edu	36	17	53924119	53924119	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004687	exon19	c.C3492T	p.L1164L	.	.	.
TEX14	56155	broad.mit.edu	36	17	54005659	54005659	+	Silent	SNP	C	T	T	rs55768547	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198393	exon24	c.G3513A	p.T1171T	.	.	.
TRIM37	4591	broad.mit.edu	36	17	54520515	54520515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005207	exon4	c.G200A	p.R67H	.	.	.
DHX40	79665	broad.mit.edu	36	17	55039290	55039290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024612	exon18	c.G2315A	p.S772N	.	.	.
TMEM49	81671	broad.mit.edu	36	17	55270499	55270499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030938	exon11	c.C1036T	p.R346W	.	.	.
TBX4	9496	broad.mit.edu	36	17	56915574	56915574	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018488	exon8	c.A1553G	p.Y518C	.	.	.
MED13	9969	broad.mit.edu	36	17	57393217	57393217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005121	exon23	c.G5273A	p.R1758Q	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58219643	58219643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100875	exon3	c.G140A	p.R47H	.	.	.
FTSJ3	117246	broad.mit.edu	36	17	59255006	59255006	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017647	exon13	c.G1193A	p.R398Q	.	.	.
GEMIN4	50628	broad.mit.edu	36	17	596086	596086	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015721	exon2	c.C1947T	p.D649D	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5962232	5962232	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015253	exon8	c.G1375T	p.E459X	.	.	.
LRRC37A3	374819	broad.mit.edu	36	17	60286325	60286325	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199340	exon11	c.G4401A	p.S1467S	.	.	.
PRKCA	5578	broad.mit.edu	36	17	62215446	62215446	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002737	exon16	c.C1741T	p.L581L	.	.	.
PITPNM3	83394	broad.mit.edu	36	17	6314402	6314402	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031220	exon13	c.C1675T	p.P559S	.	.	.
NOL11	25926	broad.mit.edu	36	17	63150704	63150704	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015462	exon6	c.C597G	p.D199E	.	.	.
BPTF	2186	broad.mit.edu	36	17	63338959	63338959	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182641	exon11	c.T4497C	p.D1499D	.	.	.
BPTF	2186	broad.mit.edu	36	17	63372200	63372200	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182641	exon21	c.T6914C	p.V2305A	.	.	.
FAM20A	54757	broad.mit.edu	36	17	64051450	64051450	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017565	exon5	c.C727T	p.R243X	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64498587	64498587	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon29	c.C3823T	p.R1275X	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64820931	64820931	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon3	c.T204C	p.P68P	.	.	.
SLC13A5	284111	broad.mit.edu	36	17	6557304	6557304	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143838	exon1	c.C73T	p.L25L	.	.	.
COG1	9382	broad.mit.edu	36	17	68709155	68709155	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018714	exon7	c.C1594A	p.L532I	.	.	.
SDK2	54549	broad.mit.edu	36	17	68893628	68893628	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144952	exon32	c.C4522A	p.L1508I	.	.	.
SDK2	54549	broad.mit.edu	36	17	68930076	68930076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144952	exon15	c.C1990T	p.R664C	.	.	.
TTYH2	94015	broad.mit.edu	36	17	69767881	69767881	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032646	exon14	c.G1543A	p.A515T	.	.	.
DNAI2	64446	broad.mit.edu	36	17	69812977	69812977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023036	exon9	c.G1012A	p.E338K	.	.	.
KIF19	124602	broad.mit.edu	36	17	69860959	69860959	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153209	exon16	c.C2144G	p.T715S	.	.	.
CD300LF	146722	broad.mit.edu	36	17	70203560	70203560	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139018	exon6	c.G616A	p.A206T	.	.	.
SLC9A3R1	9368	broad.mit.edu	36	17	70276264	70276264	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004252	exon6	c.C951T	p.S317S	.	.	.
GRIN2C	2905	broad.mit.edu	36	17	70362735	70362735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000835	exon2	c.C92T	p.T31M	.	.	.
OTOP3	347741	broad.mit.edu	36	17	70449182	70449182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178233	exon2	c.C173T	p.A58V	.	.	.
NUP85	79902	broad.mit.edu	36	17	70739034	70739034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024844	exon12	c.G1099A	p.A367T	.	.	.
PHF23	79142	broad.mit.edu	36	17	7080423	7080423	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024297	exon4	c.C547T	p.R183X	.	.	.
RECQL5	9400	broad.mit.edu	36	17	71168669	71168669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003715	exon6	c.C947T	p.T316I	.	.	.
UNK	85451	broad.mit.edu	36	17	71320823	71320823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080419	exon6	c.G920A	p.G307D	.	.	.
EVPL	2125	broad.mit.edu	36	17	71516293	71516293	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001988	exon22	c.C4588A	p.R1530S	.	.	.
EVPL	2125	broad.mit.edu	36	17	71517047	71517047	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001988	exon22	c.C3834T	p.N1278N	.	.	.
EXOC7	23265	broad.mit.edu	36	17	71595349	71595349	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145299	exon13	c.C1479T	p.G493G	.	.	.
NEURL4	84461	broad.mit.edu	36	17	7161922	7161922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032442	exon26	c.C4114T	p.R1372W	.	.	.
NEURL4	84461	broad.mit.edu	36	17	7170874	7170874	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032442	exon4	c.C972T	p.C324C	.	.	.
QRICH2	84074	broad.mit.edu	36	17	71801533	71801533	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032134	exon4	c.C372T	p.G124G	.	.	.
RHBDF2	79651	broad.mit.edu	36	17	71979612	71979612	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024599	exon19	c.C2269A	p.L757I	.	.	.
MFSD11	79157	broad.mit.edu	36	17	72286004	72286004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024311	exon14	c.G1325A	p.R442H	.	.	.
NLGN2	57555	broad.mit.edu	36	17	7256231	7256231	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020795	exon2	c.G489A	p.T163T	.	.	.
AMAC1L3	643664	broad.mit.edu	36	17	7326521	7326521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102614	exon2	c.G494A	p.S165N	.	.	.
POLR2A	5430	broad.mit.edu	36	17	7356525	7356525	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000937	exon27	c.G4498T	p.G1500C	.	.	.
FXR2	9513	broad.mit.edu	36	17	7445505	7445505	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004860	exon7	c.C607T	p.R203C	.	.	.
CBX2	84733	broad.mit.edu	36	17	75372278	75372278	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005189	exon5	c.C441T	p.A147A	.	.	.
WRAP53	55135	broad.mit.edu	36	17	7547397	7547397	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143990	exon11	c.G1515A	p.T505T	.	.	.
EIF4A3	9775	broad.mit.edu	36	17	75735188	75735188	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014740	exon1	c.C168T	p.Y56Y	.	.	.
SLC26A11	284129	broad.mit.edu	36	17	75814278	75814278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166349	exon5	c.G561A	p.V187V	.	.	.
RNF213	57674	broad.mit.edu	36	17	75938707	75938707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon32	c.C10247T	p.T3416M	.	.	.
RNF213	57674	broad.mit.edu	36	17	75956171	75956171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon44	c.C12047T	p.T4016M	.	.	.
RNF213	57674	broad.mit.edu	36	17	75974726	75974726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon63	c.G14768A	p.R4923Q	.	.	.
P4HB	5034	broad.mit.edu	36	17	77410438	77410438	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000918	exon2	c.A260T	p.E87V	.	.	.
CHD3	1107	broad.mit.edu	36	17	7743419	7743419	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005852	exon15	c.C2377A	p.P793T	.	.	.
NOTUM	147111	broad.mit.edu	36	17	77504400	77504400	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178493	exon11	c.G1218A	p.S406S	.	.	.
FASN	2194	broad.mit.edu	36	17	77634375	77634375	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004104	exon32	c.G5557A	p.V1853I	.	.	.
CNTROB	116840	broad.mit.edu	36	17	7778217	7778217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053051	exon2	c.C307T	p.R103W	.	.	.
CSNK1D	1453	broad.mit.edu	36	17	77804267	77804267	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139062	exon4	c.G479C	p.R160P	.	.	.
FOXK2	3607	broad.mit.edu	36	17	78133986	78133986	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004514	exon5	c.G990A	p.S330S	.	.	.
GUCY2D	3000	broad.mit.edu	36	17	7847966	7847966	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000180	exon3	c.G793A	p.E265K	.	.	.
SLC25A35	399512	broad.mit.edu	36	17	8134024	8134024	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201520	exon5	c.C733T	p.R245X	.	.	.
KRBA2	124751	broad.mit.edu	36	17	8214103	8214103	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213597	exon2	c.C553T	p.R185W	.	.	.
KRBA2	124751	broad.mit.edu	36	17	8214275	8214275	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213597	exon2	c.C381T	p.S127S	.	.	.
WDR16	146845	broad.mit.edu	36	17	9487152	9487152	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145054	exon14	c.G1775A	p.R592H	.	.	.
RCVRN	5957	broad.mit.edu	36	17	9745095	9745095	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002903	exon2	c.C429T	p.D143D	.	.	.
WNK4	65266	broad.mit.edu	36	17	38192974	38192975	+	Frame_Shift_Del	DEL	TG	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	TG	TG	TG	-	TG	TG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032387	exon7	c.1629_1630del	p.543_544del	.	.	.
TSPAN10	83882	broad.mit.edu	36	17	77222722	77222722	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031945	exon2	c.336delG	p.L112fs	.	.	.
MC5R	4161	broad.mit.edu	36	18	13816537	13816537	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005913	exon1	c.T773C	p.L258P	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16820983	16820983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005406	exon19	c.C2230A	p.L744I	.	.	.
GATA6	2627	broad.mit.edu	36	18	18015421	18015421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005257	exon4	c.C1312T	p.R438W	.	.	.
TTC39C	125488	broad.mit.edu	36	18	19966465	19966465	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135993	exon14	c.G1681A	p.D561N	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21060875	21060875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.G1005A	p.P335P	.	.	.
PSMA8	143471	broad.mit.edu	36	18	22012807	22012807	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144662	exon5	c.C511T	p.R171X	.	.	.
CDH2	1000	broad.mit.edu	36	18	23822524	23822524	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon11	c.A1703G	p.N568S	.	.	.
DSC1	1823	broad.mit.edu	36	18	26990084	26990084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004948	exon4	c.C391T	p.R131C	.	.	.
DSG4	147409	broad.mit.edu	36	18	27220730	27220730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134453	exon3	c.G166A	p.A56T	.	.	.
DSG4	147409	broad.mit.edu	36	18	27246843	27246843	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134453	exon15	c.C2467G	p.L823V	.	.	.
DSG3	1830	broad.mit.edu	36	18	27300691	27300691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001944	exon11	c.G1612A	p.V538I	.	.	.
DSG3	1830	broad.mit.edu	36	18	27303246	27303246	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001944	exon12	c.G1833A	p.P611P	.	.	.
DSG2	1829	broad.mit.edu	36	18	27376691	27376691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001943	exon14	c.G2212A	p.A738T	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2786462	2786462	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon47	c.C5936T	p.T1979M	.	.	.
MEP1B	4225	broad.mit.edu	36	18	28047080	28047080	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005925	exon11	c.T1139C	p.I380T	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28121972	28121972	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022751	exon4	c.C586T	p.P196S	.	.	.
DTNA	1837	broad.mit.edu	36	18	30692275	30692275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198938	exon14	c.C1300T	p.R434W	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3092489	3092489	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019856	exon22	c.C3270T	p.V1090V	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32459486	32459486	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon10	c.C972T	p.H324H	.	.	.
CELF4	56853	broad.mit.edu	36	18	33087778	33087778	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025089	exon11	c.G1341A	p.P447P	.	.	.
CELF4	56853	broad.mit.edu	36	18	33108407	33108407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025089	exon6	c.G636A	p.S212S	.	.	.
PIK3C3	5289	broad.mit.edu	36	18	37838442	37838442	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002647	exon10	c.A1109G	p.H370R	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40786469	40786469	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015559	exon4	c.A3166C	p.T1056P	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41756500	41756500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon16	c.C2903T	p.A968V	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43628927	43628927	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135937	exon7	c.C824A	p.P275Q	.	.	.
ZBTB7C	201501	broad.mit.edu	36	18	43820524	43820524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039360	exon2	c.C953T	p.P318L	.	.	.
LIPG	9388	broad.mit.edu	36	18	45361948	45361948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006033	exon6	c.G959A	p.G320D	.	.	.
ME2	4200	broad.mit.edu	36	18	46676267	46676267	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168335	exon2	c.C79T	p.P27S	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46845815	46845815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon9	c.C980T	p.A327V	.	.	.
WDR7	23335	broad.mit.edu	36	18	52514649	52514649	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon12	c.T1536C	p.G512G	.	.	.
WDR7	23335	broad.mit.edu	36	18	52575438	52575438	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon15	c.T2616C	p.S872S	.	.	.
MALT1	10892	broad.mit.edu	36	18	54541415	54541415	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173844	exon9	c.C1141T	p.R381C	.	.	.
CCBE1	147372	broad.mit.edu	36	18	55273085	55273085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133459	exon6	c.C632T	p.T211I	.	.	.
CETN1	1068	broad.mit.edu	36	18	570689	570689	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004066	exon1	c.C281T	p.T94M	.	.	.
CETN1	1068	broad.mit.edu	36	18	570797	570797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004066	exon1	c.C389T	p.A130V	.	.	.
KIAA1468	57614	broad.mit.edu	36	18	58039456	58039456	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020854	exon4	c.G713A	p.R238Q	.	.	.
TNFRSF11A	8792	broad.mit.edu	36	18	58186950	58186950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003839	exon9	c.G820A	p.A274T	.	.	.
SERPINB2	5055	broad.mit.edu	36	18	59721303	59721303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002575	exon8	c.G1032A	p.S344S	.	.	.
CCDC102B	79839	broad.mit.edu	36	18	64655062	64655062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093729	exon4	c.G82A	p.D28N	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6968337	6968337	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon43	c.G6048A	p.T2016T	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70472772	70472772	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146190	exon1	c.G809A	p.R270H	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70904459	70904459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017757	exon8	c.G5794A	p.E1932K	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71127889	71127889	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005786	exon2	c.G1404A	p.A468A	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72712670	72712670	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon5	c.C562T	p.R188W	.	.	.
ADNP2	22850	broad.mit.edu	36	18	75997545	75997545	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014913	exon4	c.T3258C	p.D1086D	.	.	.
PARD6G	84552	broad.mit.edu	36	18	76018680	76018680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032510	exon3	c.G1096A	p.G366S	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8774116	8774116	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon6	c.G1006T	p.E336X	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9247447	9247447	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015208	exon9	c.A4182G	p.P1394P	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9248814	9248814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015208	exon9	c.G5549A	p.R1850H	.	.	.
RALBP1	10928	broad.mit.edu	36	18	9512367	9512367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006788	exon4	c.C913T	p.R305C	.	.	.
RNMT	8731	broad.mit.edu	36	18	13736253	13736253	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003799	exon9	c.1174delA	p.K392fs	.	.	.
C19orf66	55337	broad.mit.edu	36	19	10062988	10062988	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018381	exon6	c.C447T	p.G149G	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10120658	10120658	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130823	exon27	c.C2622T	p.D874D	.	.	.
ZGLP1	100125288	broad.mit.edu	36	19	10279872	10279872	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103167	exon1	c.C486T	p.I162I	.	.	.
ILF3	3609	broad.mit.edu	36	19	10654313	10654313	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012218	exon13	c.C1481T	p.A494V	.	.	.
DNM2	1785	broad.mit.edu	36	19	10800823	10800823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190716	exon19	c.C2170T	p.R724C	.	.	.
CARM1	10498	broad.mit.edu	36	19	10892515	10892515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199141	exon13	c.C1430T	p.T477M	.	.	.
LDLR	3949	broad.mit.edu	36	19	11102988	11102988	+	Missense_Mutation	SNP	C	T	T	rs13306505	byHapMap	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195802	exon17	c.C2216T	p.A739V	.	.	.
SPC24	147841	broad.mit.edu	36	19	11119793	11119793	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182513	exon3	c.T306G	p.L102L	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11199101	11199101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020812	exon24	c.G2867A	p.R956H	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11207306	11207306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020812	exon21	c.G2522A	p.R841H	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11209159	11209159	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020812	exon18	c.G2046A	p.P682P	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11214972	11214972	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020812	exon12	c.C1348T	p.R450C	.	.	.
RGL3	57139	broad.mit.edu	36	19	11374173	11374173	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161616	exon11	c.G1287A	p.T429T	.	.	.
RGL3	57139	broad.mit.edu	36	19	11387752	11387752	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161616	exon5	c.G498A	p.S166S	.	.	.
ZNF653	115950	broad.mit.edu	36	19	11467931	11467931	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138783	exon3	c.G393T	p.E131D	.	.	.
STK11	6794	broad.mit.edu	36	19	1172293	1172293	+	Silent	SNP	C	T	T	rs9282859	byCluster;byFrequency;by1000genomes	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000455	exon6	c.C816T	p.Y272Y	 STK11,lung,NS,Substitution - coding silent,0 	.	.
ZNF491	126069	broad.mit.edu	36	19	11778410	11778410	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.G642A	p.P214P	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778899	11778899	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.C1131T	p.H377H	.	.	.
ZNF136	7695	broad.mit.edu	36	19	12159027	12159027	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003437	exon4	c.A834C	p.K278N	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12245425	12245425	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016264	exon4	c.T645C	p.H215H	.	.	.
ZNF564	163050	broad.mit.edu	36	19	12498456	12498456	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144976	exon4	c.C1466A	p.A489D	.	.	.
MAN2B1	4125	broad.mit.edu	36	19	12618524	12618524	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000528	exon24	c.G2946A	p.P982P	.	.	.
BEST2	54831	broad.mit.edu	36	19	12729621	12729621	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017682	exon9	c.G1260A	p.K420K	.	.	.
MAST1	22983	broad.mit.edu	36	19	12819129	12819129	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014975	exon5	c.T353C	p.L118P	.	.	.
CALR	811	broad.mit.edu	36	19	12915434	12915434	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004343	exon8	c.C1044T	p.G348G	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13275691	13275691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174080	exon16	c.C1997T	p.T666M	.	.	.
CCDC130	81576	broad.mit.edu	36	19	13726103	13726103	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030818	exon3	c.G4T	p.G2C	.	.	.
CCDC130	81576	broad.mit.edu	36	19	13730815	13730815	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030818	exon7	c.C391T	p.L131L	.	.	.
IL27RA	9466	broad.mit.edu	36	19	14011596	14011596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004843	exon4	c.C408T	p.D136D	.	.	.
PRKACA	5566	broad.mit.edu	36	19	14078584	14078584	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002730	exon3	c.C225T	p.L75L	.	.	.
OR7C1	26664	broad.mit.edu	36	19	14771191	14771191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198944	exon1	c.G758A	p.G253D	.	.	.
OR1I1	126370	broad.mit.edu	36	19	15059754	15059754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004713	exon1	c.G878A	p.R293Q	.	.	.
ILVBL	10994	broad.mit.edu	36	19	15095252	15095252	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006844	exon3	c.C271T	p.R91C	.	.	.
BRD4	23476	broad.mit.edu	36	19	15228050	15228050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014299	exon9	c.G1576A	p.A526T	.	.	.
WIZ	58525	broad.mit.edu	36	19	15399036	15399036	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021241	exon4	c.G838A	p.A280T	.	.	.
CYP4F8	11283	broad.mit.edu	36	19	15587466	15587466	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007253	exon2	c.G39A	p.P13P	.	.	.
CYP4F2	8529	broad.mit.edu	36	19	15861345	15861345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082	exon7	c.C806T	p.A269V	.	.	.
CYP4F2	8529	broad.mit.edu	36	19	15864140	15864140	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082	exon5	c.T504C	p.N168N	.	.	.
TPM4	7171	broad.mit.edu	36	19	16053805	16053805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145160	exon3	c.C323T	p.T108M	.	.	.
C19orf44	84167	broad.mit.edu	36	19	16481612	16481612	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032207	exon5	c.C1452T	p.T484T	.	.	.
NWD1	284434	broad.mit.edu	36	19	16771774	16771774	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007525	exon17	c.C3537T	p.R1179R	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16919003	16919003	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015692	exon21	c.A2684G	p.Q895R	.	.	.
HAUS8	93323	broad.mit.edu	36	19	17027714	17027714	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011699	exon9	c.C741T	p.P247P	.	.	.
ANO8	57719	broad.mit.edu	36	19	17304979	17304979	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020959	exon4	c.C420T	p.R140R	.	.	.
GTPBP3	84705	broad.mit.edu	36	19	17310774	17310774	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032620	exon5	c.C603T	p.H201H	.	.	.
ATP8B3	148229	broad.mit.edu	36	19	1734185	1734185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178002	exon29	c.C3634T	p.R1212C	.	.	.
KCNN1	3780	broad.mit.edu	36	19	17945837	17945837	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002248	exon3	c.C140T	p.A47V	.	.	.
KCNN1	3780	broad.mit.edu	36	19	17953781	17953781	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002248	exon5	c.C762T	p.D254D	.	.	.
MAST3	23031	broad.mit.edu	36	19	18096490	18096490	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015016	exon10	c.G897A	p.A299A	.	.	.
IFI30	10437	broad.mit.edu	36	19	18149047	18149047	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006332	exon5	c.G581A	p.R194Q	.	.	.
RAB3A	5864	broad.mit.edu	36	19	18174354	18174354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002866	exon2	c.G197A	p.R66H	.	.	.
PDE4C	5143	broad.mit.edu	36	19	18185189	18185189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000923	exon14	c.G1597A	p.D533N	.	.	.
LSM4	25804	broad.mit.edu	36	19	18281644	18281644	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012321	exon4	c.G172A	p.E58K	.	.	.
SUGP2	10147	broad.mit.edu	36	19	18976278	18976278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014884	exon7	c.C2628T	p.D876D	.	.	.
ZNF253	56242	broad.mit.edu	36	19	19863578	19863578	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021047	exon4	c.T522C	p.C174C	.	.	.
AP3D1	8943	broad.mit.edu	36	19	2061171	2061171	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003938	exon26	c.G3042A	p.A1014A	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21511544	21511544	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001415	exon4	c.G849A	p.K283K	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947279	21947279	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007153	exon4	c.T2397C	p.H799H	.	.	.
ZNF57	126295	broad.mit.edu	36	19	2867212	2867212	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173480	exon3	c.A267G	p.E89E	.	.	.
CELF5	60680	broad.mit.edu	36	19	3232334	3232334	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172673	exon6	c.C741T	p.Y247Y	.	.	.
C19orf29	58509	broad.mit.edu	36	19	3574820	3574820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021231	exon2	c.C508T	p.R170W	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461766	36461766	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.G773A	p.R258H	.	.	.
APBA3	9546	broad.mit.edu	36	19	3702531	3702531	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004886	exon9	c.G1416A	p.S472S	.	.	.
RAX2	84839	broad.mit.edu	36	19	3722658	3722658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032753	exon2	c.G83A	p.R28Q	.	.	.
LSM14A	26065	broad.mit.edu	36	19	39402168	39402168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114093	exon7	c.C814T	p.R272C	.	.	.
LSM14A	26065	broad.mit.edu	36	19	39404360	39404360	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114093	exon9	c.T1245C	p.L415L	.	.	.
MLL4	9757	broad.mit.edu	36	19	40916372	40916372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014727	exon29	c.C6994T	p.R2332C	 MLL4,central_nervous_system,brain,Substitution - Missense,0 	.	.
C19orf55	148137	broad.mit.edu	36	19	40942155	40942155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039887	exon2	c.G52A	p.A18T	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41028472	41028472	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004646	exon13	c.A1696G	p.T566A	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41041530	41041530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199180	exon4	c.G446A	p.R149H	.	.	.
CLIP3	25999	broad.mit.edu	36	19	41207352	41207352	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199570	exon6	c.C704T	p.A235V	.	.	.
WDR62	284403	broad.mit.edu	36	19	41285504	41285504	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083961	exon27	c.C3246T	p.D1082D	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41523365	41523365	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020917	exon5	c.T1203G	p.C401W	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41524194	41524194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020917	exon5	c.G374A	p.C125Y	.	.	.
ANKRD24	170961	broad.mit.edu	36	19	4170681	4170681	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133475	exon19	c.G3097A	p.E1033K	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060948	42060948	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003419	exon3	c.G1376T	p.C459F	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42794880	42794880	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152606	exon5	c.A859G	p.T287A	.	.	.
MPND	84954	broad.mit.edu	36	19	4305087	4305087	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159846	exon5	c.C710T	p.P237L	.	.	.
MPND	84954	broad.mit.edu	36	19	4310933	4310933	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159846	exon11	c.G1290A	p.T430T	.	.	.
KCNK6	9424	broad.mit.edu	36	19	43509289	43509289	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004823	exon2	c.T539C	p.V180A	.	.	.
GGN	199720	broad.mit.edu	36	19	43569091	43569091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152657	exon3	c.C651T	p.R217R	.	.	.
SPRED3	399473	broad.mit.edu	36	19	43574582	43574582	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042522	exon2	c.G334A	p.A112T	.	.	.
RYR1	6261	broad.mit.edu	36	19	43676976	43676976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042723	exon39	c.G6419A	p.R2140Q	.	.	.
RYR1	6261	broad.mit.edu	36	19	43749424	43749424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042723	exon91	c.C13456T	p.P4486S	.	.	.
UBXN6	80700	broad.mit.edu	36	19	4403387	4403387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025241	exon4	c.G415A	p.A139T	.	.	.
RINL	126432	broad.mit.edu	36	19	44053287	44053287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198445	exon8	c.G445A	p.V149I	.	.	.
FBXO27	126433	broad.mit.edu	36	19	44207901	44207901	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178820	exon6	c.G842A	p.R281H	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44655749	44655749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003169	exon23	c.G2325A	p.T775T	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45074517	45074517	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon22	c.G10209A	p.A3403A	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45113133	45113133	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon5	c.C2628T	p.D876D	.	.	.
PLD3	23646	broad.mit.edu	36	19	45569434	45569434	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031696	exon9	c.C693T	p.G231G	.	.	.
PLD3	23646	broad.mit.edu	36	19	45575903	45575903	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031696	exon13	c.G1456A	p.A486T	.	.	.
HIPK4	147746	broad.mit.edu	36	19	45578899	45578899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144685	exon3	c.G839A	p.R280H	.	.	.
PRX	57716	broad.mit.edu	36	19	45592783	45592783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181882	exon7	c.G3316A	p.A1106T	.	.	.
BLVRB	645	broad.mit.edu	36	19	45645675	45645675	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000713	exon5	c.C582T	p.Y194Y	.	.	.
RAB4B	53916	broad.mit.edu	36	19	45984681	45984681	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016154	exon7	c.C615T	p.A205A	.	.	.
CYP2A7	1549	broad.mit.edu	36	19	46074937	46074937	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000764	exon7	c.A1159G	p.K387E	.	.	.
CYP2A7	1549	broad.mit.edu	36	19	46075719	46075719	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000764	exon6	c.C851T	p.T284M	.	.	.
BCKDHA	593	broad.mit.edu	36	19	46619998	46619998	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164783	exon6	c.G736A	p.A246T	.	.	.
LYPD4	147719	broad.mit.edu	36	19	47033946	47033946	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173506	exon4	c.C441T	p.G147G	.	.	.
CD79A	973	broad.mit.edu	36	19	47076592	47076592	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001783	exon4	c.G514A	p.E172K	.	.	.
ERF	2077	broad.mit.edu	36	19	47445660	47445660	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006494	exon4	c.G444A	p.T148T	.	.	.
LIPE	3991	broad.mit.edu	36	19	47598882	47598882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005357	exon9	c.C2684T	p.S895L	.	.	.
PSG4	5672	broad.mit.edu	36	19	48400218	48400218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002780	exon2	c.G90A	p.P30P	.	.	.
PSG9	5678	broad.mit.edu	36	19	48463893	48463893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002784	exon2	c.G313A	p.A105T	.	.	.
ZNF575	284346	broad.mit.edu	36	19	48730448	48730448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174945	exon3	c.G34A	p.A12T	.	.	.
IRGQ	126298	broad.mit.edu	36	19	48789122	48789122	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007561	exon3	c.G768A	p.S256S	.	.	.
ZNF404	342908	broad.mit.edu	36	19	49069054	49069054	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033719	exon2	c.A1143G	p.E381E	.	.	.
ZNF285	26974	broad.mit.edu	36	19	49583583	49583583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152354	exon4	c.C664T	p.R222C	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673495	49673495	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013256	exon5	c.C1043A	p.S348Y	.	.	.
KDM4B	23030	broad.mit.edu	36	19	5028406	5028406	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015015	exon8	c.C705T	p.C235C	.	.	.
TRAPPC6A	79090	broad.mit.edu	36	19	50359078	50359078	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024108	exon5	c.C426T	p.R142R	.	.	.
CKM	1158	broad.mit.edu	36	19	50506961	50506961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001824	exon5	c.C539T	p.T180M	.	.	.
KLC3	147700	broad.mit.edu	36	19	50544658	50544658	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177417	exon8	c.C1101T	p.G367G	.	.	.
PPP1R13L	10848	broad.mit.edu	36	19	50591520	50591520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142502	exon5	c.C727T	p.R243C	.	.	.
EML2	24139	broad.mit.edu	36	19	50816662	50816662	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193269	exon13	c.C1356T	p.D452D	.	.	.
FBXO46	23403	broad.mit.edu	36	19	50908288	50908288	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080469	exon2	c.C306A	p.A102A	.	.	.
DMWD	1762	broad.mit.edu	36	19	50981583	50981583	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004943	exon3	c.C1011T	p.D337D	.	.	.
RSPH6A	81492	broad.mit.edu	36	19	51000011	51000011	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030785	exon3	c.A992C	p.K331T	.	.	.
PPP5C	5536	broad.mit.edu	36	19	51585201	51585201	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006247	exon12	c.G1409A	p.R470Q	.	.	.
PNMAL1	55228	broad.mit.edu	36	19	51665059	51665059	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018215	exon2	c.C1074T	p.P358P	.	.	.
PRKD2	25865	broad.mit.edu	36	19	51899460	51899460	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079881	exon6	c.G695A	p.R232H	.	.	.
PTPRS	5802	broad.mit.edu	36	19	5196842	5196842	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002850	exon10	c.C933T	p.C311C	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52115782	52115782	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004491	exon1	c.G2010A	p.S670S	.	.	.
ZC3H4	23211	broad.mit.edu	36	19	52262529	52262529	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015168	exon15	c.G2836A	p.G946R	.	.	.
ZC3H4	23211	broad.mit.edu	36	19	52264367	52264367	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015168	exon14	c.C2220T	p.P740P	.	.	.
NAPA	8775	broad.mit.edu	36	19	52698544	52698544	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003827	exon2	c.C126T	p.C42C	.	.	.
EHD2	30846	broad.mit.edu	36	19	52921243	52921243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014601	exon4	c.G865A	p.A289T	.	.	.
GLTSCR2	29997	broad.mit.edu	36	19	52940710	52940710	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015710	exon1	c.A82G	p.T28A	.	.	.
LIG1	3978	broad.mit.edu	36	19	53316334	53316334	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000234	exon24	c.G2290A	p.A764T	.	.	.
ZNF114	163071	broad.mit.edu	36	19	53481256	53481256	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153608	exon5	c.C563T	p.P188L	.	.	.
GRIN2D	2906	broad.mit.edu	36	19	53614344	53614344	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000836	exon8	c.T1777C	p.C593R	.	.	.
BCAT2	587	broad.mit.edu	36	19	53994848	53994848	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164773	exon4	c.G315T	p.V105V	.	.	.
HSD17B14	51171	broad.mit.edu	36	19	54008385	54008385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016246	exon9	c.C672T	p.V224V	.	.	.
HSD17B14	51171	broad.mit.edu	36	19	54031473	54031473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016246	exon1	c.C8T	p.T3M	.	.	.
ZNRF4	148066	broad.mit.edu	36	19	5406699	5406699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181710	exon1	c.C197T	p.A66V	.	.	.
GYS1	2997	broad.mit.edu	36	19	54164402	54164402	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002103	exon16	c.C2169T	p.S723S	.	.	.
RUVBL2	10856	broad.mit.edu	36	19	54209557	54209557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006666	exon12	c.C1006T	p.R336W	.	.	.
HRC	3270	broad.mit.edu	36	19	54348646	54348646	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002152	exon1	c.A1661G	p.E554G	.	.	.
HRC	3270	broad.mit.edu	36	19	54349371	54349371	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002152	exon1	c.T936C	p.T312T	.	.	.
SCAF1	58506	broad.mit.edu	36	19	54846310	54846310	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021228	exon7	c.G852C	p.E284D	.	.	.
ATF5	22809	broad.mit.edu	36	19	55128056	55128056	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012068	exon4	c.C744T	p.R248R	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55240904	55240904	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006656	exon5	c.C1392T	p.C464C	.	.	.
MYH14	79784	broad.mit.edu	36	19	55445716	55445716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077186	exon15	c.C1789T	p.R597W	.	.	.
SAFB2	9667	broad.mit.edu	36	19	5561040	5561040	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014649	exon9	c.C1262T	p.T421M	.	.	.
MYBPC2	4606	broad.mit.edu	36	19	55659519	55659519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004533	exon27	c.G3333A	p.S1111S	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55897691	55897691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016148	exon11	c.C1592T	p.T531M	.	.	.
KLK15	55554	broad.mit.edu	36	19	56022133	56022133	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017509	exon3	c.C294T	p.Y98Y	.	.	.
KLK14	43847	broad.mit.edu	36	19	56273156	56273156	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022046	exon7	c.G724A	p.A242T	.	.	.
ZNF175	7728	broad.mit.edu	36	19	56781943	56781943	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007147	exon5	c.C547T	p.R183C	.	.	.
HAS1	3036	broad.mit.edu	36	19	56914277	56914277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001523	exon2	c.C696T	p.Y232Y	.	.	.
FPR2	2358	broad.mit.edu	36	19	56964466	56964466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001462	exon2	c.C743T	p.A248V	.	.	.
ZNF614	80110	broad.mit.edu	36	19	57211643	57211643	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025040	exon5	c.G1020A	p.E340E	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57229250	57229250	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014650	exon5	c.C1494T	p.S498S	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5723936	5723936	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152784	exon20	c.T1901C	p.M634T	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57310058	57310058	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178523	exon4	c.A2171G	p.K724R	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57310165	57310165	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178523	exon4	c.A2064G	p.P688P	.	.	.
NRTN	4902	broad.mit.edu	36	19	5775275	5775275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004558	exon1	c.C99T	p.L33L	.	.	.
ZNF83	55769	broad.mit.edu	36	19	57808294	57808294	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105552	exon4	c.C1336A	p.H446N	.	.	.
ZNF83	55769	broad.mit.edu	36	19	57809273	57809273	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105552	exon4	c.G357A	p.T119T	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57900226	57900226	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161501	exon5	c.C1687T	p.R563C	.	.	.
FUT3	2525	broad.mit.edu	36	19	5795492	5795492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097640	exon3	c.G359A	p.R120H	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58360661	58360661	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024733	exon4	c.C894T	p.C298C	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58432225	58432225	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182609	exon5	c.G1567T	p.A523S	.	.	.
ZNF331	55422	broad.mit.edu	36	19	58772688	58772688	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079906	exon6	c.G1062A	p.P354P	.	.	.
LENG8	114823	broad.mit.edu	36	19	59658471	59658471	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052925	exon8	c.C938T	p.T313M	.	.	.
RDH13	112724	broad.mit.edu	36	19	60251665	60251665	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138412	exon6	c.C289T	p.R97W	.	.	.
PPP1R12C	54776	broad.mit.edu	36	19	60297870	60297870	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017607	exon12	c.G1563A	p.A521A	.	.	.
PTPRH	5794	broad.mit.edu	36	19	60401871	60401871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002842	exon8	c.G1642A	p.E548K	.	.	.
PPP6R1	22870	broad.mit.edu	36	19	60435346	60435346	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014931	exon18	c.G2034C	p.E678D	.	.	.
ZNF628	89887	broad.mit.edu	36	19	60684636	60684636	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033113	exon3	c.C252T	p.G84G	.	.	.
NLRP11	204801	broad.mit.edu	36	19	60995613	60995613	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145007	exon9	c.C2379T	p.S793S	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61060981	61060981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon3	c.G410A	p.R137H	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61157955	61157955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176811	exon3	c.C719T	p.A240V	.	.	.
ZNF543	125919	broad.mit.edu	36	19	62532058	62532058	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213598	exon4	c.C1416T	p.I472I	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62807557	62807557	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020880	exon2	c.T131C	p.L44P	.	.	.
ZNF587	84914	broad.mit.edu	36	19	63062986	63062986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032828	exon3	c.C1394T	p.A465V	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63332004	63332004	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024620	exon4	c.G679A	p.G227R	.	.	.
ZNF132	7691	broad.mit.edu	36	19	63637442	63637442	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003433	exon3	c.A1181G	p.Q394R	.	.	.
TUBB4	10382	broad.mit.edu	36	19	6446341	6446341	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006087	exon4	c.G1169A	p.R390Q	.	.	.
CD70	970	broad.mit.edu	36	19	6537039	6537039	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001252	exon3	c.C574T	p.R192C	.	.	.
EMR1	2015	broad.mit.edu	36	19	6852986	6852986	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001974	exon6	c.C615T	p.S205S	.	.	.
PALM	5064	broad.mit.edu	36	19	691362	691362	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002579	exon8	c.G513A	p.S171S	.	.	.
MCOLN1	57192	broad.mit.edu	36	19	7499735	7499735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020533	exon9	c.G1013A	p.R338Q	.	.	.
XAB2	56949	broad.mit.edu	36	19	7598707	7598707	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020196	exon3	c.G231A	p.A77A	.	.	.
HNRNPM	4670	broad.mit.edu	36	19	8457151	8457151	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005968	exon14	c.C1839T	p.G613G	.	.	.
PRAM1	84106	broad.mit.edu	36	19	8469835	8469835	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032152	exon2	c.C857T	p.P286L	.	.	.
MYO1F	4542	broad.mit.edu	36	19	8515319	8515319	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012335	exon14	c.C1386T	p.D462D	.	.	.
ACTL9	284382	broad.mit.edu	36	19	8669060	8669060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178525	exon1	c.G992A	p.R331H	.	.	.
MUC16	94025	broad.mit.edu	36	19	8889346	8889346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon11	c.G36446A	p.R12149H	.	.	.
OR1M1	125963	broad.mit.edu	36	19	9065355	9065355	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004456	exon1	c.C435T	p.V145V	.	.	.
ARID3A	1820	broad.mit.edu	36	19	922970	922970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005224	exon9	c.G1687A	p.G563S	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385083	9385083	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006631	exon11	c.G1518A	p.S506S	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385437	9385437	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006631	exon11	c.C1164A	p.A388A	.	.	.
OLFM2	93145	broad.mit.edu	36	19	9826027	9826027	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058164	exon6	c.G1200A	p.T400T	.	.	.
ZNF486	90649	broad.mit.edu	36	19	20169120	20169120	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052852	exon4	c.601delA	p.K201fs	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35626487	35626487	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014717	exon2	c.178delC	p.P60fs	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60506848	60506848	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032430	exon12	c.1128delC	p.D376fs	.	.	.
KANK3	256949	broad.mit.edu	36	19	8304950	8304961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	TCGCTGTCGCCA	TCGCTGTCGCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198471	exon5	c.1467_1478del	p.489_493del	.	.	.
C19orf34	255193	broad.mit.edu	36	19	1904991	1904991	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PCP2	126006	broad.mit.edu	36	19	7604422	7604422	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32029171	32029172	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144569	exon16	c.3271_3272insC	p.R1091fs	.	.	.
CDC14A	8556	broad.mit.edu	36	1	100736334	100736334	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033312	exon14	c.G1404A	p.S468S	.	.	.
GPR88	54112	broad.mit.edu	36	1	100777448	100777448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022049	exon2	c.G338A	p.R113H	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10643053	10643053	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079843	exon6	c.G633A	p.A211A	.	.	.
AMIGO1	57463	broad.mit.edu	36	1	109851743	109851743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020703	exon2	c.C1315T	p.R439W	.	.	.
GSTM3	2947	broad.mit.edu	36	1	110081299	110081299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000849	exon9	c.G595A	p.A199T	.	.	.
AHCYL1	10768	broad.mit.edu	36	1	110358968	110358968	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006621	exon6	c.G641A	p.R214H	.	.	.
HBXIP	10542	broad.mit.edu	36	1	110748178	110748178	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006402	exon3	c.G347A	p.R116H	.	.	.
OVGP1	5016	broad.mit.edu	36	1	111770626	111770626	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002557	exon3	c.G216T	p.Q72H	.	.	.
ATP5F1	515	broad.mit.edu	36	1	111803710	111803710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001688	exon6	c.C622T	p.R208C	.	.	.
C1orf162	128346	broad.mit.edu	36	1	111821888	111821888	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174896	exon5	c.G295T	p.A99S	.	.	.
ADORA3	140	broad.mit.edu	36	1	111847169	111847169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020683	exon1	c.C331T	p.R111W	.	.	.
PPM1J	333926	broad.mit.edu	36	1	113057111	113057111	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005167	exon3	c.C507A	p.A169A	.	.	.
PTPN22	26191	broad.mit.edu	36	1	114199083	114199083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012411	exon8	c.G652T	p.D218Y	.	.	.
SYT6	148281	broad.mit.edu	36	1	114447861	114447861	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205848	exon4	c.C822T	p.S274S	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114749637	114749637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015906	exon15	c.G2686A	p.G896R	.	.	.
NRAS	4893	broad.mit.edu	36	1	115052759	115052759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002524	exon5	c.C490T	p.R164C	.	.	.
ATP1A1	476	broad.mit.edu	36	1	116745325	116745325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000701	exon20	c.C2769T	p.F923F	.	.	.
C1orf187	374946	broad.mit.edu	36	1	11695034	11695034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198545	exon5	c.G808A	p.E270K	.	.	.
TRIM45	80263	broad.mit.edu	36	1	117457593	117457593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145635	exon5	c.G1451A	p.R484H	.	.	.
VTCN1	79679	broad.mit.edu	36	1	117500818	117500818	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024626	exon3	c.C346T	p.R116W	.	.	.
MAN1A2	10905	broad.mit.edu	36	1	117843696	117843696	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006699	exon11	c.A1674G	p.A558A	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118425609	118425609	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon14	c.C1942T	p.Q648X	.	.	.
WARS2	10352	broad.mit.edu	36	1	119420620	119420620	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201263	exon2	c.A224G	p.D75G	.	.	.
HSD3B1	3283	broad.mit.edu	36	1	119858685	119858685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000862	exon4	c.C1016T	p.A339V	.	.	.
MIIP	60672	broad.mit.edu	36	1	12004856	12004856	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021933	exon3	c.G232A	p.D78N	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120309675	120309675	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024408	exon10	c.C1605A	p.D535E	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12259151	12259151	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon19	c.G2919A	p.R973R	.	.	.
DHRS3	9249	broad.mit.edu	36	1	12563146	12563146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004753	exon2	c.C331T	p.R111W	.	.	.
DVL1	1855	broad.mit.edu	36	1	1263880	1263880	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004421	exon12	c.G1149A	p.P383P	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143592957	143592957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198832	exon28	c.G3464A	p.R1155H	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143706078	143706078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014644	exon1	c.G11A	p.G4E	.	.	.
PIAS3	10401	broad.mit.edu	36	1	144289821	144289821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006099	exon2	c.C427T	p.R143W	.	.	.
SSU72	29101	broad.mit.edu	36	1	1467340	1467340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014188	exon5	c.G554A	p.R185H	.	.	.
SV2A	9900	broad.mit.edu	36	1	148144204	148144204	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014849	exon12	c.G1897A	p.V633M	.	.	.
PRPF3	9129	broad.mit.edu	36	1	148564168	148564168	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004698	exon2	c.C144T	p.A48A	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148711271	148711271	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015203	exon11	c.C3223A	p.P1075T	.	.	.
LYSMD1	388695	broad.mit.edu	36	1	149400029	149400029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136543	exon3	c.C493T	p.R165W	.	.	.
VPS72	6944	broad.mit.edu	36	1	149415995	149415995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005997	exon6	c.C844T	p.R282W	.	.	.
ZNF687	57592	broad.mit.edu	36	1	149526412	149526412	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020832	exon2	c.A1021G	p.N341D	.	.	.
CELF3	11189	broad.mit.edu	36	1	149944191	149944191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007185	exon12	c.C1348T	p.R450C	.	.	.
TDRKH	11022	broad.mit.edu	36	1	150017890	150017890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083965	exon6	c.G778A	p.D260N	.	.	.
LINGO4	339398	broad.mit.edu	36	1	150041594	150041594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004432	exon2	c.C211T	p.R71C	.	.	.
FLG	2312	broad.mit.edu	36	1	150551854	150551854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.G2132A	p.R711H	.	.	.
FLG	2312	broad.mit.edu	36	1	150552889	150552889	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.G1097A	p.R366H	.	.	.
LCE2D	353141	broad.mit.edu	36	1	150903441	150903441	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178430	exon2	c.G236A	p.R79H	.	.	.
SPRR2A	6700	broad.mit.edu	36	1	151295733	151295733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005988	exon2	c.C103T	p.P35S	.	.	.
S100A16	140576	broad.mit.edu	36	1	151846693	151846693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080388	exon3	c.G253A	p.G85S	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152175731	152175731	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014856	exon16	c.C2350T	p.R784W	.	.	.
UBAP2L	9898	broad.mit.edu	36	1	152494794	152494794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014847	exon18	c.C2096T	p.T699M	.	.	.
IL6R	3570	broad.mit.edu	36	1	152675102	152675102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181359	exon6	c.G841A	p.D281N	.	.	.
KAZ	23254	broad.mit.edu	36	1	15303182	15303182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201628	exon13	c.C1958T	p.A653V	.	.	.
PMVK	10654	broad.mit.edu	36	1	153168143	153168143	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006556	exon3	c.G293A	p.G98D	.	.	.
THBS3	7059	broad.mit.edu	36	1	153433592	153433592	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007112	exon21	c.C2536T	p.R846X	.	.	.
GBA	2629	broad.mit.edu	36	1	153474623	153474623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000157	exon6	c.G687A	p.A229A	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153716956	153716956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon3	c.C2329T	p.R777C	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153717166	153717166	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018489	exon3	c.A2119G	p.K707E	.	.	.
MEX3A	92312	broad.mit.edu	36	1	154313769	154313769	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093725	exon2	c.C783T	p.S261S	.	.	.
CCT3	7203	broad.mit.edu	36	1	154545685	154545685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008800	exon12	c.G1453A	p.V485I	.	.	.
RHBG	57127	broad.mit.edu	36	1	154618335	154618335	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020407	exon6	c.A955G	p.T319A	.	.	.
MEF2D	4209	broad.mit.edu	36	1	154713465	154713465	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005920	exon7	c.T818C	p.I273T	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155116416	155116416	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012331	exon15	c.T2030G	p.V677G	.	.	.
FCRL4	83417	broad.mit.edu	36	1	155822788	155822788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031282	exon6	c.G929A	p.C310Y	.	.	.
MMP23B	8510	broad.mit.edu	36	1	1559809	1559809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006983	exon8	c.G1118A	p.R373H	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156881719	156881719	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon29	c.G4077T	p.G1359G	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156905922	156905922	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon14	c.T1733C	p.L578P	.	.	.
OR6K6	128371	broad.mit.edu	36	1	156991981	156991981	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005184	exon1	c.T752C	p.V251A	.	.	.
VSIG8	391123	broad.mit.edu	36	1	158094347	158094347	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013661	exon4	c.G464A	p.G155D	.	.	.
TAGLN2	8407	broad.mit.edu	36	1	158155270	158155270	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003564	exon5	c.C544T	p.R182C	.	.	.
NCSTN	23385	broad.mit.edu	36	1	158588592	158588592	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015331	exon8	c.G968A	p.R323H	.	.	.
NHLH1	4807	broad.mit.edu	36	1	158607456	158607456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005598	exon2	c.C311T	p.T104M	.	.	.
SLAMF1	6504	broad.mit.edu	36	1	158873938	158873938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003037	exon2	c.C82T	p.R28C	.	.	.
CD244	51744	broad.mit.edu	36	1	159077801	159077801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166663	exon3	c.G493A	p.V165M	.	.	.
PLEKHM2	23207	broad.mit.edu	36	1	15918982	15918982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015164	exon6	c.C632T	p.A211V	.	.	.
FCRLB	127943	broad.mit.edu	36	1	159964007	159964007	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002901	exon6	c.G1212A	p.T404T	.	.	.
FAM131C	348487	broad.mit.edu	36	1	16261241	16261241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182623	exon4	c.G208A	p.D70N	.	.	.
FBXO42	54455	broad.mit.edu	36	1	16450563	16450563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018994	exon10	c.C1343T	p.T448M	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165362100	165362100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080426	exon5	c.G1108A	p.G370S	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165362693	165362693	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080426	exon5	c.C1701T	p.S567S	.	.	.
C1orf112	55732	broad.mit.edu	36	1	168088701	168088701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018186	exon24	c.G2511A	p.A837A	.	.	.
GORAB	92344	broad.mit.edu	36	1	168787984	168787984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152281	exon5	c.C942T	p.V314V	.	.	.
FMO3	2328	broad.mit.edu	36	1	169353154	169353154	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002294	exon9	c.A1547G	p.K516R	.	.	.
MYOC	4653	broad.mit.edu	36	1	169871863	169871863	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000261	exon3	c.C1340T	p.A447V	.	.	.
CROCC	9696	broad.mit.edu	36	1	17136753	17136753	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014675	exon10	c.T1224C	p.R408R	.	.	.
TNR	7143	broad.mit.edu	36	1	173639073	173639073	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon4	c.G802A	p.G268R	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174831274	174831274	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020318	exon3	c.C1911T	p.N637N	.	.	.
TOR3A	64222	broad.mit.edu	36	1	177329913	177329913	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022371	exon5	c.G881A	p.R294Q	.	.	.
CEP350	9857	broad.mit.edu	36	1	178323368	178323368	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014810	exon32	c.C6318T	p.A2106A	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179968254	179968254	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon20	c.G2409A	p.P803P	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180017250	180017250	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon39	c.G5332A	p.G1778S	.	.	.
GLUL	2752	broad.mit.edu	36	1	180620390	180620390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002065	exon8	c.C895T	p.R299C	.	.	.
DHX9	1660	broad.mit.edu	36	1	181094557	181094557	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001357	exon10	c.C967T	p.R323X	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181353158	181353158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002293	exon9	c.G1645A	p.V549M	.	.	.
NCF2	4688	broad.mit.edu	36	1	181822681	181822681	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190794	exon2	c.C229T	p.R77X	.	.	.
RGL1	23179	broad.mit.edu	36	1	182083431	182083431	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015149	exon4	c.A352G	p.T118A	.	.	.
EDEM3	80267	broad.mit.edu	36	1	182944097	182944097	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025191	exon17	c.C1850T	p.A617V	.	.	.
EDEM3	80267	broad.mit.edu	36	1	182973409	182973409	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025191	exon3	c.C264T	p.G88G	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184147485	184147485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon6	c.G850A	p.A284T	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184251939	184251939	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon32	c.C5136T	p.C1712C	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184402601	184402601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon100	c.G15478A	p.A5160T	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184425536	184425536	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon107	c.G16811A	p.R5604H	.	.	.
TPR	7175	broad.mit.edu	36	1	184591166	184591166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon17	c.C2170T	p.R724C	.	.	.
C1orf27	54953	broad.mit.edu	36	1	184641858	184641858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164246	exon11	c.G925A	p.V309I	.	.	.
RGS21	431704	broad.mit.edu	36	1	190601688	190601688	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039152	exon5	c.C270T	p.F90F	.	.	.
ALDH4A1	8659	broad.mit.edu	36	1	19073654	19073654	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170726	exon14	c.T1469C	p.V490A	.	.	.
UBR4	23352	broad.mit.edu	36	1	19376625	19376625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020765	exon19	c.C2554T	p.P852S	.	.	.
PQLC2	54896	broad.mit.edu	36	1	19526372	19526372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017765	exon8	c.C683T	p.T228M	.	.	.
ASPM	259266	broad.mit.edu	36	1	195340695	195340695	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon18	c.C4309T	p.R1437C	.	.	.
ZNF281	23528	broad.mit.edu	36	1	198642955	198642955	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012482	exon2	c.G2502A	p.A834A	.	.	.
KIF14	9928	broad.mit.edu	36	1	198796517	198796517	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014875	exon26	c.C4186T	p.L1396L	.	.	.
KIF21B	23046	broad.mit.edu	36	1	199222796	199222796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017596	exon25	c.C3565T	p.R1189W	.	.	.
KIF21B	23046	broad.mit.edu	36	1	199225909	199225909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017596	exon20	c.G3010A	p.V1004M	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199276104	199276104	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000069	exon43	c.A5248G	p.M1750V	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199313793	199313793	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000069	exon11	c.C1456T	p.L486L	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199327792	199327792	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000069	exon4	c.G472A	p.G158S	.	.	.
IGFN1	91156	broad.mit.edu	36	1	199462847	199462847	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164586	exon23	c.C11001T	p.G3667G	.	.	.
TNNT2	7139	broad.mit.edu	36	1	199601048	199601048	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000364	exon10	c.G305T	p.R102L	.	.	.
IPO9	55705	broad.mit.edu	36	1	200110109	200110109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018085	exon21	c.C2819T	p.A940V	.	.	.
GPR37L1	9283	broad.mit.edu	36	1	200363842	200363842	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004767	exon2	c.C981A	p.T327T	.	.	.
GPR37L1	9283	broad.mit.edu	36	1	200363990	200363990	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004767	exon2	c.G1129A	p.V377I	.	.	.
KDM5B	10765	broad.mit.edu	36	1	200969283	200969283	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006618	exon23	c.G3778A	p.V1260M	.	.	.
OTUD3	23252	broad.mit.edu	36	1	20106716	20106716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015207	exon8	c.C1087T	p.R363C	.	.	.
PRELP	5549	broad.mit.edu	36	1	201722551	201722551	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002725	exon3	c.G1068A	p.R356R	.	.	.
SNRPE	6635	broad.mit.edu	36	1	202099456	202099456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003094	exon3	c.C124T	p.R42W	.	.	.
PIK3C2B	5287	broad.mit.edu	36	1	202699787	202699787	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002646	exon6	c.G1286A	p.C429Y	.	.	.
LRRN2	10446	broad.mit.edu	36	1	202853804	202853804	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201630	exon2	c.C1940T	p.A647V	.	.	.
NFASC	23114	broad.mit.edu	36	1	203204100	203204100	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon7	c.C840T	p.I280I	.	.	.
TMCC2	9911	broad.mit.edu	36	1	203477323	203477323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014858	exon2	c.G275A	p.R92H	.	.	.
AVPR1B	553	broad.mit.edu	36	1	204391148	204391148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000707	exon1	c.C85T	p.R29W	.	.	.
CTSE	1510	broad.mit.edu	36	1	204491995	204491995	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001910	exon5	c.A597G	p.P199P	.	.	.
SRGAP2	23380	broad.mit.edu	36	1	204693206	204693206	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170637	exon17	c.C1954T	p.R652C	.	.	.
IKBKE	9641	broad.mit.edu	36	1	204716190	204716190	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193322	exon6	c.C402T	p.R134R	.	.	.
LGTN	1939	broad.mit.edu	36	1	204849419	204849419	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006893	exon3	c.C264A	p.S88S	.	.	.
YOD1	55432	broad.mit.edu	36	1	205290770	205290770	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018566	exon1	c.G229A	p.A77T	.	.	.
CR2	1380	broad.mit.edu	36	1	205713609	205713609	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006658	exon11	c.C2075A	p.P692H	.	.	.
PLXNA2	5362	broad.mit.edu	36	1	206267230	206267230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025179	exon32	c.C5666T	p.A1889V	.	.	.
PLXNA2	5362	broad.mit.edu	36	1	206283153	206283153	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025179	exon21	c.C3893T	p.T1298M	.	.	.
SERTAD4	56256	broad.mit.edu	36	1	208481614	208481614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019605	exon4	c.G380A	p.R127Q	.	.	.
KIF17	57576	broad.mit.edu	36	1	20903915	20903915	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122819	exon5	c.G735A	p.E245E	.	.	.
KCNH1	3756	broad.mit.edu	36	1	209159659	209159659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002238	exon7	c.G1327A	p.A443T	.	.	.
TRAF5	7188	broad.mit.edu	36	1	209605395	209605395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004619	exon8	c.C751T	p.R251C	.	.	.
PPP2R5A	5525	broad.mit.edu	36	1	210588407	210588407	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199756	exon7	c.T647C	p.M216T	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211369517	211369517	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012424	exon6	c.T497C	p.V166A	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212609633	212609633	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005401	exon17	c.C3061T	p.R1021X	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212612696	212612696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005401	exon16	c.C3017T	p.A1006V	.	.	.
USH2A	7399	broad.mit.edu	36	1	213874578	213874578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon70	c.C15143T	p.A5048V	.	.	.
USH2A	7399	broad.mit.edu	36	1	213968042	213968042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon61	c.G12019A	p.D4007N	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216586890	216586890	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003238	exon1	c.G224T	p.R75M	.	.	.
RAB3GAP2	25782	broad.mit.edu	36	1	218431238	218431238	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012414	exon14	c.G1282A	p.A428T	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22054609	22054609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005529	exon46	c.G5848A	p.V1950M	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22079514	22079514	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005529	exon16	c.C2124T	p.S708S	.	.	.
MIA3	375056	broad.mit.edu	36	1	220868385	220868385	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon4	c.G1200A	p.T400T	.	.	.
DISP1	84976	broad.mit.edu	36	1	221242802	221242802	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.C1440T	p.G480G	.	.	.
CELA3B	23436	broad.mit.edu	36	1	22185649	22185649	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007352	exon7	c.T681C	p.D227D	.	.	.
PSEN2	5664	broad.mit.edu	36	1	225149791	225149791	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000447	exon13	c.C1235T	p.A412V	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225289814	225289814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014826	exon23	c.C2969T	p.A990V	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225908778	225908778	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178549	exon4	c.A369G	p.K123K	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226542029	226542029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon36	c.C9556T	p.R3186W	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226549301	226549301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon43	c.G11593A	p.A3865T	.	.	.
TRIM17	51127	broad.mit.edu	36	1	226665475	226665475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016102	exon4	c.G551A	p.R184H	.	.	.
ABCB10	23456	broad.mit.edu	36	1	227741937	227741937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012089	exon6	c.G1228A	p.V410M	.	.	.
COG2	22796	broad.mit.edu	36	1	228887583	228887583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007357	exon12	c.G1358A	p.R453Q	.	.	.
TRIM67	440730	broad.mit.edu	36	1	229409059	229409059	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004342	exon7	c.C1719T	p.D573D	.	.	.
EPHB2	2048	broad.mit.edu	36	1	23064164	23064164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017449	exon5	c.G1175A	p.R392H	.	.	.
MORN1	79906	broad.mit.edu	36	1	2309580	2309580	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024848	exon3	c.G205A	p.G69R	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231202873	231202873	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon30	c.A5129G	p.D1710G	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231461004	231461004	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon5	c.C1227T	p.D409D	.	.	.
KDM1A	23028	broad.mit.edu	36	1	23271265	23271265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009999	exon14	c.C1610T	p.A537V	.	.	.
LUZP1	7798	broad.mit.edu	36	1	23293023	23293023	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033631	exon4	c.A319G	p.K107E	.	.	.
NID1	4811	broad.mit.edu	36	1	234220942	234220942	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon14	c.C2795T	p.A932V	.	.	.
ACTN2	88	broad.mit.edu	36	1	234972947	234972947	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103	exon11	c.G1236A	p.T412T	.	.	.
RYR2	6262	broad.mit.edu	36	1	235796566	235796566	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon28	c.G3291T	p.K1097N	.	.	.
RYR2	6262	broad.mit.edu	36	1	236038894	236038894	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon100	c.G14369A	p.R4790Q	.	.	.
ZP4	57829	broad.mit.edu	36	1	236120546	236120546	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021186	exon1	c.C13T	p.R5W	.	.	.
CHRM3	1131	broad.mit.edu	36	1	238138155	238138155	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000740	exon5	c.C781T	p.R261C	.	.	.
ZNF238	10472	broad.mit.edu	36	1	242284907	242284907	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006352	exon1	c.G1181A	p.R394H	.	.	.
MYOM3	127294	broad.mit.edu	36	1	24279265	24279265	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152372	exon20	c.C2414T	p.P805L	.	.	.
MYOM3	127294	broad.mit.edu	36	1	24281779	24281779	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152372	exon17	c.C1983T	p.P661P	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245665957	245665957	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004895	exon6	c.G2561T	p.S854I	.	.	.
OR2G2	81470	broad.mit.edu	36	1	245818807	245818807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001915	exon1	c.C523T	p.R175C	.	.	.
OR6F1	343169	broad.mit.edu	36	1	245942473	245942473	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005286	exon1	c.G208T	p.E70X	.	.	.
OR14A16	284532	broad.mit.edu	36	1	246045241	246045241	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001966	exon1	c.C414A	p.T138T	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246330102	246330102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175911	exon3	c.G802A	p.A268T	.	.	.
SH3BP5L	80851	broad.mit.edu	36	1	247072995	247072995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030645	exon7	c.C909T	p.D303D	.	.	.
ZNF692	55657	broad.mit.edu	36	1	247111282	247111282	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193328	exon11	c.G1175A	p.R392H	.	.	.
RCAN3	11123	broad.mit.edu	36	1	24730424	24730424	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013441	exon3	c.G325A	p.E109K	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24868221	24868221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005839	exon14	c.G1760A	p.R587H	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24868509	24868509	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005839	exon14	c.C2048T	p.S683L	.	.	.
C1orf93	127281	broad.mit.edu	36	1	2510259	2510259	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195741	exon5	c.C478A	p.P160T	.	.	.
SLC9A1	6548	broad.mit.edu	36	1	27300287	27300287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003047	exon11	c.G2104A	p.G702S	.	.	.
FCN3	8547	broad.mit.edu	36	1	27568544	27568544	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173452	exon7	c.A637G	p.S213G	.	.	.
AHDC1	27245	broad.mit.edu	36	1	27748400	27748400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029882	exon6	c.C2814T	p.C938C	.	.	.
AHDC1	27245	broad.mit.edu	36	1	27748620	27748620	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029882	exon6	c.G2594A	p.R865Q	.	.	.
SMPDL3B	27293	broad.mit.edu	36	1	28157628	28157628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014474	exon8	c.C1060T	p.R354C	.	.	.
RCC1	1104	broad.mit.edu	36	1	28734468	28734468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001269	exon6	c.G650A	p.R217Q	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29503026	29503026	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005704	exon17	c.G2579A	p.R860Q	.	.	.
SDC3	9672	broad.mit.edu	36	1	31122194	31122194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014654	exon3	c.C662T	p.T221M	.	.	.
BAI2	576	broad.mit.edu	36	1	31969088	31969088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001703	exon29	c.C4280T	p.P1427L	.	.	.
BAI2	576	broad.mit.edu	36	1	31978184	31978184	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001703	exon14	c.G2097A	p.E699E	.	.	.
LCK	3932	broad.mit.edu	36	1	32514859	32514859	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042771	exon9	c.C849T	p.D283D	.	.	.
SYNC	81493	broad.mit.edu	36	1	32933093	32933093	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161708	exon2	c.T1193C	p.L398P	.	.	.
KIAA1522	57648	broad.mit.edu	36	1	33009356	33009356	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198972	exon6	c.C1812T	p.H604H	.	.	.
TMEM54	113452	broad.mit.edu	36	1	33136314	33136314	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033504	exon2	c.G210T	p.V70V	.	.	.
PRDM16	63976	broad.mit.edu	36	1	3317869	3317869	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022114	exon9	c.C1248T	p.H416H	.	.	.
CSMD2	114784	broad.mit.edu	36	1	34173977	34173977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon4	c.C563T	p.T188M	.	.	.
ZMYM6	9204	broad.mit.edu	36	1	35226223	35226223	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007167	exon16	c.G3047A	p.R1016H	.	.	.
C1orf113	79729	broad.mit.edu	36	1	36558009	36558009	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024676	exon11	c.A825G	p.P275P	.	.	.
STK40	83931	broad.mit.edu	36	1	36599513	36599513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032017	exon3	c.G8A	p.R3Q	.	.	.
OSCP1	127700	broad.mit.edu	36	1	36661616	36661616	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145047	exon5	c.C555T	p.N185N	.	.	.
CSF3R	1441	broad.mit.edu	36	1	36713712	36713712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172313	exon4	c.G214A	p.G72R	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37080053	37080053	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000831	exon10	c.C1401T	p.I467I	.	.	.
ZC3H12A	80149	broad.mit.edu	36	1	37720724	37720724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025079	exon5	c.C921T	p.P307P	.	.	.
MACF1	23499	broad.mit.edu	36	1	39522431	39522431	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon11	c.C1037A	p.P346H	.	.	.
MACF1	23499	broad.mit.edu	36	1	39591400	39591400	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon40	c.C5148T	p.S1716S	.	.	.
MACF1	23499	broad.mit.edu	36	1	39626757	39626757	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon54	c.G9470A	p.R3157H	.	.	.
MYCL1	4610	broad.mit.edu	36	1	40135854	40135854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033081	exon2	c.G872A	p.R291H	.	.	.
MFSD2A	84879	broad.mit.edu	36	1	40197071	40197071	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136493	exon3	c.C379T	p.R127C	.	.	.
MFSD2A	84879	broad.mit.edu	36	1	40205096	40205096	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136493	exon8	c.C871T	p.P291S	.	.	.
ZMPSTE24	10269	broad.mit.edu	36	1	40530735	40530735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005857	exon10	c.G1235A	p.R412H	.	.	.
RIMKLA	284716	broad.mit.edu	36	1	42648400	42648400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173642	exon4	c.C640T	p.L214F	.	.	.
TMEM125	128218	broad.mit.edu	36	1	43511552	43511552	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144626	exon4	c.G572A	p.G191D	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43663879	43663879	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015284	exon5	c.G267A	p.T89T	.	.	.
CCDC24	149473	broad.mit.edu	36	1	44234215	44234215	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152499	exon9	c.C720A	p.S240S	.	.	.
BEST4	266675	broad.mit.edu	36	1	45024353	45024353	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153274	exon4	c.G616A	p.A206T	.	.	.
ZSWIM5	57643	broad.mit.edu	36	1	45278774	45278774	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020883	exon7	c.C1633T	p.R545X	.	.	.
MAST2	23139	broad.mit.edu	36	1	46273109	46273109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015112	exon29	c.C4181T	p.A1394V	.	.	.
CYP4A11	1579	broad.mit.edu	36	1	47171048	47171048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000778	exon11	c.G1336A	p.A446T	.	.	.
SPATA6	54558	broad.mit.edu	36	1	48597955	48597955	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019073	exon10	c.G984A	p.S328S	.	.	.
AGBL4	84871	broad.mit.edu	36	1	48825380	48825380	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032785	exon11	c.C1150T	p.R384C	.	.	.
BEND5	79656	broad.mit.edu	36	1	48997312	48997312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024603	exon3	c.C592T	p.R198C	.	.	.
TTC39A	22996	broad.mit.edu	36	1	51528307	51528307	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144832	exon16	c.G1463A	p.R488H	.	.	.
EPS15	2060	broad.mit.edu	36	1	51644233	51644233	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159969	exon4	c.G667T	p.A223S	.	.	.
CC2D1B	200014	broad.mit.edu	36	1	52598070	52598070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032449	exon8	c.G837A	p.P279P	.	.	.
CC2D1B	200014	broad.mit.edu	36	1	52599391	52599391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032449	exon5	c.C320T	p.T107M	.	.	.
ZYG11B	79699	broad.mit.edu	36	1	53051855	53051855	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024646	exon11	c.C1755G	p.D585E	.	.	.
YIPF1	54432	broad.mit.edu	36	1	54109639	54109639	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018982	exon7	c.C475T	p.R159X	 YIPF1,large_intestine,colon,Substitution - Missense,0 	.	.
MRPL37	51253	broad.mit.edu	36	1	54454444	54454444	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016491	exon6	c.G1033A	p.V345M	.	.	.
C1orf177	163747	broad.mit.edu	36	1	55055321	55055321	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001110533	exon9	c.A1122T	p.R374R	.	.	.
PCSK9	255738	broad.mit.edu	36	1	55296897	55296897	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174936	exon9	c.G1492A	p.E498K	.	.	.
C1orf168	199920	broad.mit.edu	36	1	57030501	57030501	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004303	exon2	c.C573T	p.A191A	.	.	.
CHD5	26038	broad.mit.edu	36	1	6107805	6107805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015557	exon29	c.G4336A	p.A1446T	.	.	.
RNF207	388591	broad.mit.edu	36	1	6195782	6195782	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207396	exon16	c.C1604T	p.T535M	.	.	.
RNF207	388591	broad.mit.edu	36	1	6200984	6200984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207396	exon17	c.C1701T	p.H567H	.	.	.
ACOT7	11332	broad.mit.edu	36	1	6247297	6247297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181864	exon9	c.C1090T	p.R364W	.	.	.
UBE2U	148581	broad.mit.edu	36	1	64445113	64445113	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152489	exon3	c.C227T	p.P76L	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64841164	64841164	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020925	exon4	c.A345G	p.P115P	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64902797	64902797	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020925	exon15	c.C1970A	p.T657N	.	.	.
LEPR	3953	broad.mit.edu	36	1	65847094	65847094	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003679	exon12	c.G1674A	p.W558X	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6684403	6684403	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018198	exon1	c.T45C	p.Y15Y	.	.	.
ZRANB2	9406	broad.mit.edu	36	1	71309135	71309135	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005455	exon7	c.C646T	p.R216C	.	.	.
RABGGTB	5876	broad.mit.edu	36	1	76030572	76030572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004582	exon7	c.C698T	p.P233L	.	.	.
PIGK	10026	broad.mit.edu	36	1	77444991	77444991	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005482	exon3	c.G161A	p.R54Q	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79159903	79159903	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022159	exon9	c.T1240G	p.S414A	.	.	.
CYR61	3491	broad.mit.edu	36	1	85821059	85821059	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001554	exon5	c.T892C	p.F298L	.	.	.
CLCA4	22802	broad.mit.edu	36	1	86798225	86798225	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012128	exon2	c.C182T	p.T61M	.	.	.
HS2ST1	9653	broad.mit.edu	36	1	87336176	87336176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134492	exon5	c.C656T	p.P219L	.	.	.
LMO4	8543	broad.mit.edu	36	1	87577878	87577878	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006769	exon3	c.C308T	p.A103V	.	.	.
GBP7	388646	broad.mit.edu	36	1	89387682	89387682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207398	exon7	c.C1033T	p.P345S	.	.	.
SLC2A7	155184	broad.mit.edu	36	1	8987455	8987455	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207420	exon11	c.C1263T	p.D421D	.	.	.
SLC2A7	155184	broad.mit.edu	36	1	9005682	9005682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207420	exon3	c.G193A	p.A65T	.	.	.
ABCA4	24	broad.mit.edu	36	1	94239020	94239020	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon47	c.G6439A	p.A2147T	.	.	.
ABCA4	24	broad.mit.edu	36	1	94270024	94270024	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon27	c.G4026A	p.P1342P	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99539964	99539964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014839	exon6	c.C889T	p.R297W	.	.	.
PALMD	54873	broad.mit.edu	36	1	99900499	99900499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017734	exon2	c.C82T	p.R28C	.	.	.
FRRS1	391059	broad.mit.edu	36	1	99949013	99949013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013660	exon15	c.G1561A	p.V521I	.	.	.
FRRS1	391059	broad.mit.edu	36	1	99979050	99979050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013660	exon6	c.G463A	p.V155M	.	.	.
PROX1	5629	broad.mit.edu	36	1	212236622	212236622	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002763	exon2	c.121delT	p.F41fs	.	.	.
AGT	183	broad.mit.edu	36	1	228905654	228905655	+	Frame_Shift_Del	DEL	CT	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000029	exon5	c.1313_1314del	p.438_438del	.	.	.
RPL22	6146	broad.mit.edu	36	1	6180372	6180372	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000983	exon2	c.44delA	p.K15fs	.	.	.
EFCAB7	84455	broad.mit.edu	36	1	63795445	63795445	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032437	exon10	c.1287delT	p.N429fs	.	.	.
C1orf212	113444	broad.mit.edu	36	1	35093542	35093542	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM53	79639	broad.mit.edu	36	1	44883639	44883639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SPTLC3	55304	broad.mit.edu	36	20	13001053	13001053	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018327	exon3	c.G453A	p.T151T	.	.	.
TASP1	55617	broad.mit.edu	36	20	13363764	13363764	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017714	exon12	c.C1023T	p.G341G	.	.	.
NSFL1C	55968	broad.mit.edu	36	20	1381207	1381207	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016143	exon7	c.G716A	p.R239Q	.	.	.
MACROD2	140733	broad.mit.edu	36	20	13930936	13930936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080676	exon2	c.C49T	p.R17C	.	.	.
FLRT3	23767	broad.mit.edu	36	20	14255657	14255657	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198391	exon3	c.C496A	p.L166I	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16285084	16285084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024704	exon23	c.G3512A	p.R1171H	.	.	.
BFSP1	631	broad.mit.edu	36	20	17427551	17427551	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161705	exon6	c.C495T	p.Y165Y	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19627316	19627316	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020689	exon15	c.G1711A	p.G571R	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19971134	19971134	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016652	exon9	c.G1482A	p.W494X	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20217304	20217304	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015585	exon23	c.C2848A	p.L950I	.	.	.
PLK1S1	55857	broad.mit.edu	36	20	21090689	21090689	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163022	exon4	c.C274T	p.R92X	.	.	.
CST8	10047	broad.mit.edu	36	20	23420318	23420318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005492	exon2	c.G14A	p.R5Q	.	.	.
ZNF343	79175	broad.mit.edu	36	20	2411857	2411857	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024325	exon6	c.C1750T	p.R584X	.	.	.
ACSS1	84532	broad.mit.edu	36	20	24952117	24952117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032501	exon4	c.C792T	p.D264D	.	.	.
PYGB	5834	broad.mit.edu	36	20	25221100	25221100	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002862	exon17	c.C2028T	p.G676G	.	.	.
ZNF337	26152	broad.mit.edu	36	20	25605536	25605536	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015655	exon5	c.A388G	p.M130V	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2727113	2727113	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184699	exon3	c.C411A	p.S137S	.	.	.
PTPRA	5786	broad.mit.edu	36	20	2893773	2893773	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080840	exon5	c.A340G	p.T114A	.	.	.
COX4I2	84701	broad.mit.edu	36	20	29690504	29690504	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032609	exon2	c.G23A	p.S8N	.	.	.
COX4I2	84701	broad.mit.edu	36	20	29696289	29696289	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032609	exon5	c.G437A	p.R146H	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30488165	30488165	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015338	exon12	c.C3989A	p.P1330H	.	.	.
C20orf112	140688	broad.mit.edu	36	20	30504459	30504459	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080616	exon6	c.G777A	p.T259T	.	.	.
FASTKD5	60493	broad.mit.edu	36	20	3075474	3075474	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021826	exon2	c.G2243A	p.R748H	.	.	.
CBFA2T2	9139	broad.mit.edu	36	20	31695869	31695869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032999	exon11	c.C1544T	p.A515V	.	.	.
GGT7	2686	broad.mit.edu	36	20	32901456	32901456	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178026	exon14	c.G1794A	p.P598P	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33048556	33048556	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020884	exon31	c.C3402T	p.S1134S	.	.	.
UQCC	55245	broad.mit.edu	36	20	33365942	33365942	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018244	exon8	c.C614T	p.T205I	.	.	.
CPNE1	8904	broad.mit.edu	36	20	33683901	33683901	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152927	exon4	c.G261A	p.E87E	.	.	.
C20orf4	25980	broad.mit.edu	36	20	34291722	34291722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015511	exon2	c.G518A	p.R173H	.	.	.
TGIF2	60436	broad.mit.edu	36	20	34640677	34640677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199535	exon2	c.C86T	p.S29L	.	.	.
GFRA4	64096	broad.mit.edu	36	20	3588864	3588864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022139	exon5	c.C670T	p.P224S	.	.	.
TGM2	7052	broad.mit.edu	36	20	36192986	36192986	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004613	exon12	c.G1836A	p.P612P	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36970189	36970189	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172735	exon9	c.G1007A	p.R336Q	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36980332	36980332	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172735	exon10	c.C1187T	p.A396V	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36980545	36980545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172735	exon10	c.C1400T	p.T467M	.	.	.
FAM83D	81610	broad.mit.edu	36	20	37013886	37013886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030919	exon4	c.C1157T	p.A386V	.	.	.
TOP1	7150	broad.mit.edu	36	20	39146556	39146556	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003286	exon8	c.A548C	p.K183T	.	.	.
PLCG1	5335	broad.mit.edu	36	20	39236213	39236213	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002660	exon31	c.G3681A	p.T1227T	.	.	.
PLCG1	5335	broad.mit.edu	36	20	39236317	39236317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002660	exon31	c.G3785A	p.R1262H	.	.	.
ZHX3	23051	broad.mit.edu	36	20	39265547	39265547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015035	exon3	c.C1424T	p.A475V	.	.	.
ZHX3	23051	broad.mit.edu	36	20	39266766	39266766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015035	exon3	c.C205T	p.R69W	.	.	.
EMILIN3	90187	broad.mit.edu	36	20	39425804	39425804	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052846	exon3	c.G402A	p.T134T	.	.	.
CHD6	84181	broad.mit.edu	36	20	39559497	39559497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon8	c.G1033A	p.A345T	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40740053	40740053	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon7	c.C1020T	p.V340V	.	.	.
SMOX	54498	broad.mit.edu	36	20	4110550	4110550	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175840	exon4	c.G536A	p.R179H	.	.	.
CSNK2A1	1457	broad.mit.edu	36	20	412627	412627	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001895	exon13	c.C1154A	p.A385D	.	.	.
SGK2	10110	broad.mit.edu	36	20	41602866	41602866	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032107	exon21	c.C2325T	p.D775D	.	.	.
IFT52	51098	broad.mit.edu	36	20	41704639	41704639	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016004	exon13	c.C1227T	p.H409H	.	.	.
HNF4A	3172	broad.mit.edu	36	20	42468199	42468199	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030003	exon2	c.C137T	p.T46M	.	.	.
ADA	100	broad.mit.edu	36	20	42684910	42684910	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000022	exon8	c.C754A	p.L252M	.	.	.
ADA	100	broad.mit.edu	36	20	42686335	42686335	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000022	exon6	c.C528T	p.T176T	.	.	.
DNTTIP1	116092	broad.mit.edu	36	20	43857415	43857415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052951	exon4	c.G298A	p.V100M	.	.	.
ACOT8	10005	broad.mit.edu	36	20	43905738	43905738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005469	exon5	c.G676A	p.V226M	.	.	.
CTSA	5476	broad.mit.edu	36	20	43956109	43956109	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000308	exon8	c.C822T	p.C274C	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44097574	44097574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020708	exon3	c.C272T	p.P91L	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44107085	44107085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020708	exon12	c.G1468A	p.G490R	.	.	.
ELMO2	63916	broad.mit.edu	36	20	44435569	44435569	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182764	exon15	c.G1292A	p.R431H	.	.	.
SLC2A10	81031	broad.mit.edu	36	20	44787504	44787504	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030777	exon2	c.C422T	p.A141V	.	.	.
ZMYND8	23613	broad.mit.edu	36	20	45308250	45308250	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012408	exon14	c.C2193T	p.S731S	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45713391	45713391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174087	exon20	c.G3907A	p.A1303T	.	.	.
SULF2	55959	broad.mit.edu	36	20	45740839	45740839	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198596	exon8	c.G1181A	p.R394Q	.	.	.
PREX1	57580	broad.mit.edu	36	20	46797824	46797824	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon2	c.G220A	p.A74T	.	.	.
CSE1L	1434	broad.mit.edu	36	20	47122287	47122287	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001316	exon9	c.G826A	p.A276T	.	.	.
PTGIS	5740	broad.mit.edu	36	20	47589564	47589564	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000961	exon5	c.G623A	p.R208H	.	.	.
TMEM189-UBE2V1	387522	broad.mit.edu	36	20	48178032	48178032	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199129	exon5	c.T578C	p.F193S	.	.	.
SLC23A2	9962	broad.mit.edu	36	20	4841594	4841594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203327	exon4	c.G139A	p.G47S	.	.	.
BCAS4	55653	broad.mit.edu	36	20	48891758	48891758	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198799	exon4	c.G403A	p.V135M	.	.	.
NFATC2	4773	broad.mit.edu	36	20	49525524	49525524	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012340	exon4	c.C1413T	p.H471H	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50202139	50202139	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018197	exon6	c.G1999A	p.A667T	.	.	.
CDS2	8760	broad.mit.edu	36	20	5105302	5105302	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003818	exon4	c.C300T	p.C100C	.	.	.
AURKA	6790	broad.mit.edu	36	20	54381931	54381931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198436	exon8	c.G794A	p.G265E	.	.	.
C20orf107	388799	broad.mit.edu	36	20	54533451	54533451	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012971	exon1	c.G180A	p.W60X	.	.	.
RBM38	55544	broad.mit.edu	36	20	55401214	55401214	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017495	exon2	c.C335T	p.A112V	.	.	.
PCK1	5105	broad.mit.edu	36	20	55573026	55573026	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002591	exon8	c.G1269A	p.P423P	.	.	.
NPEPL1	79716	broad.mit.edu	36	20	56702917	56702917	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024663	exon3	c.C370T	p.R124C	.	.	.
GNAS	2778	broad.mit.edu	36	20	56861763	56861763	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080425	exon1	c.C48T	p.R16R	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57262827	57262827	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178457	exon5	c.G4668A	p.S1556S	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57900597	57900597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014258	exon23	c.C2207T	p.S736L	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57901137	57901137	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014258	exon22	c.T1808C	p.L603S	.	.	.
LRRN4	164312	broad.mit.edu	36	20	5969805	5969805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152611	exon5	c.G2086A	p.A696T	.	.	.
CDH4	1002	broad.mit.edu	36	20	59919014	59919014	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001794	exon9	c.C1330T	p.R444C	.	.	.
GTPBP5	26164	broad.mit.edu	36	20	60201922	60201922	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015666	exon2	c.C51T	p.G17G	.	.	.
SLC17A9	63910	broad.mit.edu	36	20	61069209	61069209	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022082	exon13	c.C1223A	p.A408D	.	.	.
GMEB2	26205	broad.mit.edu	36	20	61691898	61691898	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012384	exon10	c.C1581T	p.H527H	.	.	.
GMEB2	26205	broad.mit.edu	36	20	61693906	61693906	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012384	exon9	c.G865A	p.G289S	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892203	61892203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025224	exon2	c.G352A	p.V118M	.	.	.
TPD52L2	7165	broad.mit.edu	36	20	61975596	61975596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199363	exon3	c.C297T	p.D99D	.	.	.
BMP2	650	broad.mit.edu	36	20	6707223	6707223	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001200	exon3	c.C678T	p.F226F	.	.	.
C20orf54	113278	broad.mit.edu	36	20	693893	693893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033409	exon2	c.G526A	p.V176I	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8703222	8703222	+	Silent	SNP	G	T	T	rs45464693	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182734	exon27	c.G2967T	p.T989T	.	.	.
POTED	317754	broad.mit.edu	36	21	13904854	13904854	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174981	exon1	c.G434A	p.R145K	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18697669	18697669	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002772	exon1	c.C142T	p.R48X	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27259743	27259743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007038	exon1	c.C839T	p.A280V	.	.	.
LTN1	26046	broad.mit.edu	36	21	29240416	29240416	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015565	exon20	c.G3690A	p.E1230E	.	.	.
KRTAP27-1	643812	broad.mit.edu	36	21	30631644	30631644	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077711	exon1	c.G214A	p.D72N	.	.	.
KRTAP13-1	140258	broad.mit.edu	36	21	30690378	30690378	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181599	exon1	c.G103A	p.V35I	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31446925	31446925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon20	c.C3266T	p.T1089M	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31966447	31966447	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145444	exon19	c.G2535A	p.Q845Q	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32994174	32994174	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003895	exon4	c.C441T	p.I147I	.	.	.
SON	6651	broad.mit.edu	36	21	33846772	33846772	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032195	exon3	c.G3365A	p.R1122H	.	.	.
TTC3	7267	broad.mit.edu	36	21	37447325	37447325	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001894	exon27	c.T2618C	p.V873A	.	.	.
ERG	2078	broad.mit.edu	36	21	38697471	38697471	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136154	exon6	c.G440A	p.R147Q	.	.	.
UBASH3A	53347	broad.mit.edu	36	21	42711665	42711665	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001895	exon6	c.G810A	p.T270T	.	.	.
PDE9A	5152	broad.mit.edu	36	21	43062262	43062262	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001574	exon15	c.A1260C	p.K420N	.	.	.
TRAPPC10	7109	broad.mit.edu	36	21	44323917	44323917	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003274	exon12	c.C1514A	p.A505E	.	.	.
ITGB2	3689	broad.mit.edu	36	21	45155113	45155113	+	Missense_Mutation	SNP	G	A	A	rs61737078	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127491	exon2	c.C13T	p.R5C	.	.	.
PCNT	5116	broad.mit.edu	36	21	46594100	46594100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006031	exon8	c.G1282A	p.G428S	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46802073	46802073	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015151	exon31	c.C3777T	p.G1259G	.	.	.
S100B	6285	broad.mit.edu	36	21	46846717	46846717	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006272	exon2	c.G40A	p.V14I	.	.	.
LIPI	149998	broad.mit.edu	36	21	14483275	14483275	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198996	exon2	c.446delA	p.N149fs	.	.	.
TTC3	7267	broad.mit.edu	36	21	37446113	37446113	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001894	exon26	c.2327delA	p.Q776fs	.	.	.
MX1	4599	broad.mit.edu	36	21	41739345	41739345	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144925	exon14	c.1109delA	p.E370fs	.	.	.
PCNT	5116	broad.mit.edu	36	21	46660665	46660665	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006031	exon30	c.6405delG	p.T2135fs	.	.	.
CECR5	27440	broad.mit.edu	36	22	15999090	15999090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033070	exon8	c.G1093A	p.V365I	.	.	.
SLC25A18	83733	broad.mit.edu	36	22	16450834	16450834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031481	exon9	c.C719T	p.T240M	.	.	.
MICAL3	57553	broad.mit.edu	36	22	16727516	16727516	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136004	exon23	c.C3126T	p.C1042C	.	.	.
DGCR2	9993	broad.mit.edu	36	22	17432389	17432389	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001173534	exon3	c.C388T	p.R130W	.	.	.
C22orf29	79680	broad.mit.edu	36	22	18219750	18219750	+	Missense_Mutation	SNP	C	T	T	rs9618711	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024627	exon3	c.G35A	p.R12H	.	.	.
RIMBP3	85376	broad.mit.edu	36	22	18840135	18840135	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015672	exon1	c.C1167T	p.R389R	.	.	.
KLHL22	84861	broad.mit.edu	36	22	19130820	19130820	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032775	exon6	c.C1449T	p.R483R	.	.	.
LZTR1	8216	broad.mit.edu	36	22	19671837	19671837	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006767	exon4	c.C365T	p.S122L	.	.	.
MMP11	4320	broad.mit.edu	36	22	22452685	22452685	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005940	exon3	c.G478A	p.A160T	.	.	.
SLC2A11	66035	broad.mit.edu	36	22	22554966	22554966	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024938	exon8	c.C894T	p.S298S	.	.	.
SPECC1L	23384	broad.mit.edu	36	22	23056395	23056395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145468	exon7	c.C2392T	p.R798C	.	.	.
SPECC1L	23384	broad.mit.edu	36	22	23138659	23138659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145468	exon15	c.G3248A	p.G1083D	.	.	.
ADORA2A	135	broad.mit.edu	36	22	23166712	23166712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000675	exon3	c.C494T	p.A165V	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23612668	23612668	+	Silent	SNP	C	T	T	rs34478910	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098497	exon16	c.C1743T	p.F581F	.	.	.
TMEM211	255349	broad.mit.edu	36	22	23661335	23661335	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001663	exon3	c.G355A	p.E119K	.	.	.
TFIP11	24144	broad.mit.edu	36	22	25236062	25236062	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012143	exon4	c.G177A	p.S59S	.	.	.
TBC1D10A	83874	broad.mit.edu	36	22	29025501	29025501	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031937	exon3	c.C349T	p.R117W	.	.	.
MTFP1	51537	broad.mit.edu	36	22	29153344	29153344	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016498	exon3	c.G382A	p.A128T	.	.	.
SEC14L3	266629	broad.mit.edu	36	22	29187436	29187436	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174975	exon11	c.C942T	p.I314I	.	.	.
PES1	23481	broad.mit.edu	36	22	29307518	29307518	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014303	exon7	c.G744A	p.P248P	.	.	.
TCN2	6948	broad.mit.edu	36	22	29349011	29349011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184726	exon8	c.C1082T	p.A361V	.	.	.
DUSP18	150290	broad.mit.edu	36	22	29389695	29389695	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152511	exon2	c.G296A	p.R99H	.	.	.
DRG1	4733	broad.mit.edu	36	22	30146335	30146335	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004147	exon5	c.G506A	p.G169D	.	.	.
EIF4ENIF1	56478	broad.mit.edu	36	22	30189873	30189873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019843	exon5	c.G379A	p.V127M	.	.	.
TOM1	10043	broad.mit.edu	36	22	34059417	34059417	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135730	exon9	c.G819A	p.P273P	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36417194	36417194	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024313	exon6	c.C547T	p.R183W	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36450289	36450289	+	Missense_Mutation	SNP	A	G	G	rs71317067	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039141	exon7	c.A1780G	p.T594A	.	.	.
BAIAP2L2	80115	broad.mit.edu	36	22	36823049	36823049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025045	exon7	c.G548A	p.R183H	.	.	.
SUN2	25777	broad.mit.edu	36	22	37476282	37476282	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199579	exon5	c.G477A	p.S159S	.	.	.
APOBEC3A	200315	broad.mit.edu	36	22	37687531	37687531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145699	exon3	c.G368A	p.R123H	.	.	.
TAB1	10454	broad.mit.edu	36	22	38141574	38141574	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153497	exon3	c.C294T	p.A98A	.	.	.
CACNA1I	8911	broad.mit.edu	36	22	38405120	38405120	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021096	exon32	c.G5118A	p.S1706S	.	.	.
EP300	2033	broad.mit.edu	36	22	39902303	39902303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001429	exon30	c.C4886T	p.A1629V	.	.	.
SEPT3	55964	broad.mit.edu	36	22	40713574	40713574	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145733	exon5	c.G416T	p.W139L	.	.	.
FAM109B	150368	broad.mit.edu	36	22	40803958	40803958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002034	exon3	c.C715T	p.R239W	.	.	.
CYP2D6	1565	broad.mit.edu	36	22	40854293	40854293	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000106	exon5	c.C670T	p.L224L	.	.	.
TCF20	6942	broad.mit.edu	36	22	40939972	40939972	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005650	exon1	c.T1284C	p.P428P	.	.	.
TTLL12	23170	broad.mit.edu	36	22	41909091	41909091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015140	exon2	c.C186T	p.D62D	.	.	.
SCUBE1	80274	broad.mit.edu	36	22	42045982	42045982	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173050	exon3	c.G254T	p.G85V	.	.	.
SAMM50	25813	broad.mit.edu	36	22	42717599	42717599	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015380	exon14	c.G1344T	p.M448I	.	.	.
PARVB	29780	broad.mit.edu	36	22	42891089	42891089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003828	exon13	c.G1063A	p.A355T	.	.	.
FAM118A	55007	broad.mit.edu	36	22	44102509	44102509	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001104595	exon5	c.C423T	p.G141G	.	.	.
TTC38	55020	broad.mit.edu	36	22	45048469	45048469	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017931	exon4	c.C204T	p.H68H	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45165811	45165811	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014246	exon16	c.C6186T	p.G2062G	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45168795	45168795	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014246	exon14	c.T5872G	p.W1958G	.	.	.
TBC1D22A	25771	broad.mit.edu	36	22	45947875	45947875	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014346	exon13	c.C1496T	p.A499V	.	.	.
BRD1	23774	broad.mit.edu	36	22	48556760	48556760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014577	exon9	c.C2654T	p.T885M	.	.	.
MLC1	23209	broad.mit.edu	36	22	48857450	48857450	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015166	exon7	c.G544A	p.A182T	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48880106	48880106	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164104	exon3	c.C390T	p.G130G	.	.	.
PLXNB2	23654	broad.mit.edu	36	22	49070539	49070539	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012401	exon2	c.C602T	p.T201M	.	.	.
TYMP	1890	broad.mit.edu	36	22	49313897	49313897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001953	exon4	c.G426A	p.M142I	.	.	.
TTN	7273	broad.mit.edu	36	2	179156078	179156079	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133432	exon142	c.38877_38878insA	p.K12959fs	.	.	.
NPAS2	4862	broad.mit.edu	36	2	100971081	100971081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002518	exon17	c.G1738A	p.G580R	.	.	.
NPAS2	4862	broad.mit.edu	36	2	100973248	100973248	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002518	exon18	c.G1926A	p.P642P	.	.	.
TBC1D8	11138	broad.mit.edu	36	2	101033365	101033365	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102426	exon5	c.C757T	p.R253X	.	.	.
CREG2	200407	broad.mit.edu	36	2	101338251	101338251	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153836	exon3	c.C621T	p.I207I	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101852580	101852580	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145687	exon21	c.C2204T	p.T735M	.	.	.
IL1R1	3554	broad.mit.edu	36	2	102159637	102159637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000877	exon11	c.G1696A	p.V566M	.	.	.
SLC9A4	389015	broad.mit.edu	36	2	102509169	102509169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011552	exon11	c.G1970A	p.R657H	.	.	.
GPR45	11250	broad.mit.edu	36	2	105225280	105225280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007227	exon1	c.G533A	p.R178Q	.	.	.
NOL10	79954	broad.mit.edu	36	2	10729164	10729164	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024894	exon6	c.A431G	p.Y144C	.	.	.
POLR1B	84172	broad.mit.edu	36	2	113047838	113047838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137604	exon13	c.G2332A	p.G778R	.	.	.
CHCHD5	84269	broad.mit.edu	36	2	113060028	113060028	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032309	exon2	c.G9A	p.A3A	.	.	.
CHCHD5	84269	broad.mit.edu	36	2	113062920	113062920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032309	exon4	c.C316T	p.P106S	.	.	.
IL1RN	3557	broad.mit.edu	36	2	113605195	113605195	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000577	exon4	c.T254G	p.L85R	.	.	.
DPP10	57628	broad.mit.edu	36	2	116201953	116201953	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178036	exon9	c.T518C	p.F173S	.	.	.
NTSR2	23620	broad.mit.edu	36	2	11717663	11717663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012344	exon3	c.C946T	p.R316C	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11828971	11828971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon4	c.C311T	p.A104V	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11862072	11862072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon15	c.C1978T	p.R660C	.	.	.
MARCO	8685	broad.mit.edu	36	2	119416377	119416377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006770	exon1	c.G31A	p.E11K	.	.	.
SCTR	6344	broad.mit.edu	36	2	119947500	119947500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002980	exon4	c.G404A	p.R135Q	.	.	.
INHBB	3625	broad.mit.edu	36	2	120823163	120823163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002193	exon2	c.G467A	p.R156Q	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121892686	121892686	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015282	exon23	c.C2302T	p.R768W	.	.	.
MYO7B	4648	broad.mit.edu	36	2	128096114	128096114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080527	exon27	c.C3535T	p.R1179C	.	.	.
AMMECR1L	83607	broad.mit.edu	36	2	128343537	128343537	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199140	exon6	c.C685T	p.R229C	.	.	.
IMP4	92856	broad.mit.edu	36	2	130820303	130820303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033416	exon8	c.G749A	p.R250H	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133259024	133259024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.C1830T	p.T610T	.	.	.
MGAT5	4249	broad.mit.edu	36	2	134902442	134902442	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002410	exon14	c.G1831T	p.G611W	.	.	.
UBXN4	23190	broad.mit.edu	36	2	136253100	136253100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014607	exon11	c.C1166T	p.A389V	.	.	.
DARS	1615	broad.mit.edu	36	2	136435518	136435518	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001349	exon4	c.C238A	p.L80I	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141015942	141015942	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon44	c.G7263A	p.S2421S	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144878998	144878998	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171653	exon4	c.G395A	p.R132H	.	.	.
TPO	7173	broad.mit.edu	36	2	1459927	1459927	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175721	exon7	c.C882T	p.A294A	.	.	.
TPO	7173	broad.mit.edu	36	2	1470684	1470684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175721	exon9	c.C1682T	p.T561M	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149538202	149538202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004522	exon11	c.C1152T	p.G384G	.	.	.
RIF1	55183	broad.mit.edu	36	2	152029656	152029656	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177664	exon30	c.T5376C	p.H1792H	.	.	.
NEB	4703	broad.mit.edu	36	2	152125382	152125382	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon124	c.C19284T	p.H6428H	.	.	.
NEB	4703	broad.mit.edu	36	2	152215427	152215427	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon53	c.C7134T	p.D2378D	.	.	.
NR4A2	4929	broad.mit.edu	36	2	156890685	156890685	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006186	exon8	c.C1614T	p.H538H	.	.	.
PKP4	8502	broad.mit.edu	36	2	159227833	159227833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003628	exon14	c.C2390T	p.P797L	.	.	.
TANC1	85461	broad.mit.edu	36	2	159759157	159759157	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033394	exon17	c.C2886T	p.D962D	.	.	.
ITGB6	3694	broad.mit.edu	36	2	160737391	160737391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000888	exon6	c.G856A	p.V286I	.	.	.
RBMS1	5937	broad.mit.edu	36	2	160843368	160843368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002897	exon11	c.C990T	p.P330P	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162507641	162507641	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178016	exon16	c.C2034T	p.N678N	.	.	.
PXDN	7837	broad.mit.edu	36	2	1643733	1643733	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012293	exon14	c.C1764T	p.D588D	.	.	.
GALNT3	2591	broad.mit.edu	36	2	166314619	166314619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004482	exon10	c.G1658A	p.R553Q	.	.	.
GALNT3	2591	broad.mit.edu	36	2	166321866	166321866	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004482	exon7	c.G1329A	p.W443X	.	.	.
GALNT3	2591	broad.mit.edu	36	2	166324212	166324212	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	G	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004482	exon5	c.A953C	p.K318T	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166556233	166556233	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165964	exon26	c.G5714A	p.R1905Q	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166971165	166971165	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon25	c.A4220C	p.K1407T	.	.	.
SPC25	57405	broad.mit.edu	36	2	169454263	169454263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020675	exon2	c.G13A	p.E5K	.	.	.
DHRS9	10170	broad.mit.edu	36	2	169648196	169648196	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142270	exon4	c.T425C	p.I142T	.	.	.
LRP2	4036	broad.mit.edu	36	2	169717678	169717678	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon67	c.G12338A	p.G4113D	.	.	.
LRP2	4036	broad.mit.edu	36	2	169842595	169842595	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon13	c.G1678A	p.A560T	.	.	.
LRP2	4036	broad.mit.edu	36	2	169855613	169855613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon8	c.G910A	p.G304R	.	.	.
UBR3	130507	broad.mit.edu	36	2	170566141	170566141	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172070	exon27	c.T4000G	p.C1334G	.	.	.
GAD1	2571	broad.mit.edu	36	2	171410267	171410267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000817	exon8	c.G757A	p.A253T	.	.	.
GAD1	2571	broad.mit.edu	36	2	171414082	171414082	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000817	exon12	c.G1160A	p.R387H	.	.	.
SLC25A12	8604	broad.mit.edu	36	2	172358427	172358427	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003705	exon14	c.G1402A	p.A468T	.	.	.
WIPF1	7456	broad.mit.edu	36	2	175144886	175144886	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077269	exon5	c.C893T	p.P298L	.	.	.
HOXD3	3232	broad.mit.edu	36	2	176744541	176744541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006898	exon3	c.C592T	p.R198C	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178644954	178644954	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016953	exon1	c.C457T	p.R153X	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178909335	178909335	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032523	exon9	c.C719T	p.T240M	.	.	.
TTN	7273	broad.mit.edu	36	2	179130003	179130003	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon158	c.G60928A	p.V20310M	.	.	.
TTN	7273	broad.mit.edu	36	2	179147311	179147311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.G44598A	p.Q14866Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179150747	179150747	+	Silent	SNP	A	G	G	rs34943774	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon151	c.T41456C	p.L13819P	.	.	.
TTN	7273	broad.mit.edu	36	2	179167196	179167196	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon125	c.C30974T	p.S10325L	.	.	.
TTN	7273	broad.mit.edu	36	2	179170577	179170577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon122	c.C30282T	p.G10094G	.	.	.
TTN	7273	broad.mit.edu	36	2	179193237	179193237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon76	c.C19061T	p.A6354V	.	.	.
TTN	7273	broad.mit.edu	36	2	179282557	179282557	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon96	c.G25002A	p.T8334T	.	.	.
TTN	7273	broad.mit.edu	36	2	179298937	179298937	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon67	c.G16625T	p.G5542V	.	.	.
TTN	7273	broad.mit.edu	36	2	179304057	179304057	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon57	c.C13848A	p.G4616G	.	.	.
TTN	7273	broad.mit.edu	36	2	179348036	179348036	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon29	c.A6647C	p.E2216A	.	.	.
TTN	7273	broad.mit.edu	36	2	179350240	179350240	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon27	c.C4695T	p.V1565V	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179410373	179410373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173648	exon23	c.C3818T	p.A1273V	.	.	.
CERKL	375298	broad.mit.edu	36	2	182121817	182121817	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201548	exon7	c.T908G	p.L303R	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185511485	185511485	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194250	exon4	c.A3117T	p.E1039D	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1872079	1872079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon16	c.G2455A	p.V819I	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1894841	1894841	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon12	c.C1661T	p.T554M	.	.	.
ASNSD1	54529	broad.mit.edu	36	2	190240823	190240823	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019048	exon5	c.T1553C	p.L518S	.	.	.
STAT1	6772	broad.mit.edu	36	2	191559851	191559851	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007315	exon14	c.A1195G	p.S399G	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191965158	191965158	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012223	exon19	c.C2062T	p.R688X	.	.	.
OSR1	130497	broad.mit.edu	36	2	19416943	19416943	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145260	exon2	c.G105A	p.S35S	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196372321	196372321	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon55	c.G10297A	p.V3433M	.	.	.
PGAP1	80055	broad.mit.edu	36	2	197414247	197414247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024989	exon27	c.G2725A	p.V909I	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198657818	198657818	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006226	exon2	c.C1332T	p.L444L	.	.	.
SPATS2L	26010	broad.mit.edu	36	2	201045866	201045866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015535	exon12	c.C1127T	p.A376V	.	.	.
AOX1	316	broad.mit.edu	36	2	201166171	201166171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159	exon2	c.C103T	p.L35F	.	.	.
AOX1	316	broad.mit.edu	36	2	201235907	201235907	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159	exon31	c.T3513C	p.V1171V	.	.	.
NIF3L1	60491	broad.mit.edu	36	2	201476542	201476542	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021824	exon7	c.C949T	p.R317X	.	.	.
CASP8	841	broad.mit.edu	36	2	201858275	201858275	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033356	exon7	c.C1249T	p.R417X	.	.	.
ALS2	57679	broad.mit.edu	36	2	202288796	202288796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon25	c.G3848A	p.G1283E	.	.	.
ALS2	57679	broad.mit.edu	36	2	202299677	202299677	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon18	c.A3137T	p.D1046V	.	.	.
ICA1L	130026	broad.mit.edu	36	2	203387719	203387719	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138468	exon9	c.G817A	p.D273N	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203775676	203775676	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114132	exon50	c.C7346T	p.T2449I	.	.	.
NRP2	8828	broad.mit.edu	36	2	206316206	206316206	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201266	exon9	c.A1326G	p.S442S	.	.	.
NRP2	8828	broad.mit.edu	36	2	206367860	206367860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201266	exon17	c.G2629A	p.V877I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881017	206881017	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.C3520T	p.R1174X	.	.	.
MDH1B	130752	broad.mit.edu	36	2	207328068	207328068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039845	exon5	c.C820T	p.R274C	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208903621	208903621	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015040	exon23	c.G3921A	p.Q1307Q	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208912393	208912393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015040	exon30	c.G4679A	p.R1560H	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212275132	212275132	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005235	exon12	c.C1294A	p.L432M	.	.	.
BARD1	580	broad.mit.edu	36	2	215342273	215342273	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000465	exon5	c.A1323G	p.I441M	.	.	.
SMARCAL1	50485	broad.mit.edu	36	2	217020070	217020070	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014140	exon11	c.C1795T	p.P599S	.	.	.
TNS1	7145	broad.mit.edu	36	2	218391163	218391163	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022648	exon24	c.C3825A	p.H1275Q	.	.	.
ZNF142	7701	broad.mit.edu	36	2	219217741	219217741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105537	exon8	c.G1742A	p.R581H	.	.	.
BCS1L	617	broad.mit.edu	36	2	219234879	219234879	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004328	exon5	c.T614C	p.V205A	.	.	.
TTLL4	9654	broad.mit.edu	36	2	219312111	219312111	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014640	exon3	c.T1468C	p.S490P	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219600711	219600711	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon13	c.C2116T	p.P706S	.	.	.
ABCB6	10058	broad.mit.edu	36	2	219786248	219786248	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005689	exon12	c.C1764T	p.G588G	.	.	.
ATG9A	79065	broad.mit.edu	36	2	219797270	219797270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024085	exon7	c.G1067A	p.R356H	.	.	.
DES	1674	broad.mit.edu	36	2	219993241	219993241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001927	exon3	c.C664T	p.R222C	.	.	.
SPEG	10290	broad.mit.edu	36	2	220037524	220037524	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173476	exon4	c.C284T	p.A95V	.	.	.
ACCN4	55515	broad.mit.edu	36	2	220108253	220108253	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018674	exon6	c.C1573A	p.L525M	.	.	.
TMEM198	130612	broad.mit.edu	36	2	220122760	220122760	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005209	exon5	c.C1023T	p.D341D	.	.	.
PAX3	5077	broad.mit.edu	36	2	222793295	222793295	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181461	exon7	c.C981T	p.T327T	.	.	.
FAM124B	79843	broad.mit.edu	36	2	224974276	224974276	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122779	exon1	c.G454A	p.A152T	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227625337	227625337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon32	c.G2896A	p.A966T	.	.	.
SLC16A14	151473	broad.mit.edu	36	2	230619521	230619521	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152527	exon4	c.A565G	p.R189G	.	.	.
ALPI	248	broad.mit.edu	36	2	233031239	233031239	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001631	exon9	c.G1060A	p.D354N	.	.	.
ECEL1	9427	broad.mit.edu	36	2	233055413	233055413	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004826	exon12	c.G1755A	p.A585A	.	.	.
DGKD	8527	broad.mit.edu	36	2	234021508	234021508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152879	exon13	c.G1456A	p.A486T	.	.	.
DGKD	8527	broad.mit.edu	36	2	234040522	234040522	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152879	exon28	c.G3358A	p.V1120M	.	.	.
UGT1A9	54600	broad.mit.edu	36	2	234246083	234246083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021027	exon1	c.C764T	p.T255M	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234556601	234556601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024080	exon20	c.G2755A	p.V919M	.	.	.
SH3BP4	23677	broad.mit.edu	36	2	235626039	235626039	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014521	exon5	c.G2573A	p.R858Q	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236610024	236610024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037131	exon14	c.C1726T	p.R576W	.	.	.
IQCA1	79781	broad.mit.edu	36	2	237038908	237038908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024726	exon6	c.G905A	p.R302Q	.	.	.
IQCA1	79781	broad.mit.edu	36	2	237070594	237070594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024726	exon2	c.C287T	p.T96M	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237942231	237942231	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon7	c.C2793T	p.D931D	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237945610	237945610	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon6	c.C1968T	p.D656D	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237954571	237954571	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon3	c.C402T	p.A134A	.	.	.
SCLY	51540	broad.mit.edu	36	2	238655538	238655538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016510	exon6	c.C726T	p.R242R	.	.	.
ASB1	51665	broad.mit.edu	36	2	239017825	239017825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040445	exon4	c.G598A	p.A200T	.	.	.
PRR21	643905	broad.mit.edu	36	2	240630669	240630669	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080835	exon1	c.C404G	p.P135R	.	.	.
MFSD2B	388931	broad.mit.edu	36	2	24093244	24093244	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080473	exon4	c.G373A	p.A125T	.	.	.
GPC1	2817	broad.mit.edu	36	2	241051512	241051512	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002081	exon4	c.G793A	p.A265T	.	.	.
CAPN10	11132	broad.mit.edu	36	2	241179082	241179082	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023085	exon3	c.C451A	p.L151M	.	.	.
CAPN10	11132	broad.mit.edu	36	2	241182043	241182043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023085	exon5	c.C736T	p.R246W	.	.	.
THAP4	51078	broad.mit.edu	36	2	242194428	242194428	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164356	exon2	c.C138T	p.H46H	.	.	.
ATG4B	23192	broad.mit.edu	36	2	242242715	242242715	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013325	exon5	c.A365G	p.Y122C	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24389891	24389891	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019595	exon4	c.C130T	p.Q44X	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24735117	24735117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003743	exon3	c.C67T	p.P23S	.	.	.
ADCY3	109	broad.mit.edu	36	2	24995184	24995184	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004036	exon1	c.G177A	p.P59P	.	.	.
C2orf39	92749	broad.mit.edu	36	2	26506089	26506089	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145038	exon5	c.G630T	p.Q210H	.	.	.
C2orf39	92749	broad.mit.edu	36	2	26507176	26507176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145038	exon6	c.C697T	p.R233C	.	.	.
CENPA	1058	broad.mit.edu	36	2	26869175	26869175	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001809	exon3	c.G258A	p.W86X	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27413928	27413928	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035521	exon6	c.C952T	p.R318X	.	.	.
FNDC4	64838	broad.mit.edu	36	2	27570726	27570726	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022823	exon3	c.A245G	p.Q82R	.	.	.
GCKR	2646	broad.mit.edu	36	2	27579988	27579988	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001486	exon9	c.G748A	p.G250R	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27656925	27656925	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.G3982T	p.G1328X	.	.	.
MRPL33	9553	broad.mit.edu	36	2	27850875	27850875	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004891	exon3	c.T122C	p.L41P	.	.	.
FAM179A	165186	broad.mit.edu	36	2	29100736	29100736	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199280	exon13	c.G1845A	p.A615A	.	.	.
ALK	238	broad.mit.edu	36	2	29460205	29460205	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon5	c.C1179T	p.I393I	.	.	.
EHD3	30845	broad.mit.edu	36	2	31311121	31311121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014600	exon1	c.G130A	p.E44K	.	.	.
EHD3	30845	broad.mit.edu	36	2	31320794	31320794	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014600	exon2	c.C378T	p.N126N	.	.	.
SPAST	6683	broad.mit.edu	36	2	32215507	32215507	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199436	exon10	c.G1283A	p.R428H	.	.	.
TSSC1	7260	broad.mit.edu	36	2	3240201	3240201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003310	exon4	c.G292A	p.V98M	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32543295	32543295	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon25	c.T5156C	p.V1719A	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33379120	33379120	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000627	exon17	c.T2356C	p.S786P	.	.	.
TTC15	51112	broad.mit.edu	36	2	3370577	3370577	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016030	exon2	c.C176T	p.A59V	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36523312	36523312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016441	exon4	c.G799A	p.A267T	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36560268	36560268	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016441	exon7	c.C1299T	p.C433C	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36598157	36598157	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016441	exon12	c.G2174A	p.R725H	.	.	.
VIT	5212	broad.mit.edu	36	2	36835649	36835649	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177972	exon5	c.C357T	p.N119N	.	.	.
STRN	6801	broad.mit.edu	36	2	36980278	36980278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003162	exon6	c.C687T	p.S229S	.	.	.
CCDC75	253635	broad.mit.edu	36	2	37169050	37169050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174931	exon2	c.G10A	p.E4K	.	.	.
GALM	130589	broad.mit.edu	36	2	38756579	38756579	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138801	exon2	c.A212G	p.Y71C	.	.	.
GALM	130589	broad.mit.edu	36	2	38762021	38762021	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138801	exon3	c.G441A	p.W147X	.	.	.
DHX57	90957	broad.mit.edu	36	2	38934709	38934709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198963	exon9	c.C2021T	p.T674I	.	.	.
KCNG3	170850	broad.mit.edu	36	2	42524978	42524978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133329	exon2	c.G911A	p.R304H	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	43977323	43977323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133259	exon35	c.C3854T	p.P1285L	.	.	.
EPAS1	2034	broad.mit.edu	36	2	46456417	46456417	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001430	exon8	c.C971T	p.T324M	.	.	.
FBXO11	80204	broad.mit.edu	36	2	47919534	47919534	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190274	exon4	c.C555A	p.R185R	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50135603	50135603	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon21	c.G3922A	p.D1308N	.	.	.
NRXN1	9378	broad.mit.edu	36	2	51108436	51108436	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon2	c.G480A	p.P160P	.	.	.
C2orf63	130162	broad.mit.edu	36	2	55293321	55293321	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152385	exon5	c.C491A	p.P164H	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60542128	60542128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022893	exon4	c.G1423A	p.D475N	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60626895	60626895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138559	exon2	c.G100A	p.G34S	.	.	.
REL	5966	broad.mit.edu	36	2	61002575	61002575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002908	exon11	c.C1261T	p.R421C	.	.	.
EHBP1	23301	broad.mit.edu	36	2	63059842	63059842	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142614	exon14	c.C2476T	p.R826X	.	.	.
OTX1	5013	broad.mit.edu	36	2	63136168	63136168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199770	exon5	c.G278A	p.C93Y	.	.	.
BMP10	27302	broad.mit.edu	36	2	68946858	68946858	+	Silent	SNP	G	A	A	rs2231343	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014482	exon2	c.C684T	p.H228H	.	.	.
ANXA4	307	broad.mit.edu	36	2	69888609	69888609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001153	exon6	c.G374A	p.R125H	.	.	.
ADD2	119	broad.mit.edu	36	2	70759354	70759354	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185054	exon11	c.C1373A	p.P458H	.	.	.
ADD2	119	broad.mit.edu	36	2	70764280	70764280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185054	exon10	c.G1076A	p.R359Q	.	.	.
RNF144A	9781	broad.mit.edu	36	2	7078089	7078089	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014746	exon6	c.G336A	p.P112P	.	.	.
CLEC4F	165530	broad.mit.edu	36	2	70897720	70897720	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173535	exon4	c.C301T	p.R101X	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71515385	71515385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014497	exon28	c.C5877T	p.F1959F	.	.	.
DYSF	8291	broad.mit.edu	36	2	71650523	71650523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130982	exon28	c.G2972A	p.R991Q	.	.	.
RAB11FIP5	26056	broad.mit.edu	36	2	73169570	73169570	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015470	exon2	c.C813T	p.G271G	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73528665	73528665	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon8	c.T1500A	p.T500T	.	.	.
TET3	200424	broad.mit.edu	36	2	74168583	74168583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144993	exon4	c.G2393A	p.R798H	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74336517	74336517	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021196	exon8	c.C918T	p.N306N	.	.	.
TTC31	64427	broad.mit.edu	36	2	74573725	74573725	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022492	exon13	c.C1432T	p.R478X	.	.	.
HTRA2	27429	broad.mit.edu	36	2	74612323	74612323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013247	exon5	c.G1031A	p.R344H	.	.	.
SEMA4F	10505	broad.mit.edu	36	2	74760705	74760705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004263	exon14	c.G2174A	p.R725Q	.	.	.
HK2	3099	broad.mit.edu	36	2	74954944	74954944	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000189	exon7	c.C735T	p.I245I	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	80662453	80662453	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004389	exon14	c.C2008T	p.R670W	.	.	.
ATOH8	84913	broad.mit.edu	36	2	85844799	85844799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032827	exon2	c.C943T	p.R315C	.	.	.
KDM3A	55818	broad.mit.edu	36	2	86550900	86550900	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146688	exon11	c.G1582A	p.E528K	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8854399	8854399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020738	exon11	c.G1051A	p.V351M	.	.	.
PROM2	150696	broad.mit.edu	36	2	95309446	95309446	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144707	exon11	c.C1401T	p.G467G	.	.	.
ASTL	431705	broad.mit.edu	36	2	96162921	96162921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002036	exon5	c.G425A	p.R142K	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96308979	96308979	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014014	exon36	c.C5070T	p.H1690H	.	.	.
FER1L5	90342	broad.mit.edu	36	2	96729449	96729449	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113382	exon43	c.G4916A	p.R1639H	.	.	.
REV1	51455	broad.mit.edu	36	2	99387456	99387456	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016316	exon18	c.C2928T	p.G976G	.	.	.
AFF3	3899	broad.mit.edu	36	2	99551762	99551762	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon18	c.A3041G	p.H1014R	.	.	.
AFF3	3899	broad.mit.edu	36	2	99576631	99576631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon14	c.C1999T	p.R667C	.	.	.
RBM45	129831	broad.mit.edu	36	2	178697166	178697166	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152945	exon8	c.1135delA	p.K379fs	.	.	.
TTN	7273	broad.mit.edu	36	2	179125270	179125270	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003319	exon163	c.63407delA	p.N21136fs	.	.	.
AOX1	316	broad.mit.edu	36	2	201194169	201194171	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	CTT	CTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159	exon18	c.1956_1958del	p.652_653del	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32520703	32520703	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon18	c.4011delA	p.R1337fs	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101050388	101050388	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182909	exon5	c.C2822T	p.T941M	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10226273	10226273	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001570	exon4	c.G425T	p.G142V	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10239481	10239481	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001570	exon9	c.T1175G	p.L392R	.	.	.
SENP7	57337	broad.mit.edu	36	3	102527571	102527571	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020654	exon24	c.G3059T	p.W1020L	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10357224	10357224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001683	exon17	c.C2947T	p.R983W	.	.	.
BBX	56987	broad.mit.edu	36	3	108980039	108980039	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142568	exon13	c.C2186T	p.P729L	.	.	.
MYH15	22989	broad.mit.edu	36	3	109660899	109660899	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon19	c.G2080T	p.G694C	.	.	.
ABHD10	55347	broad.mit.edu	36	3	113193053	113193053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018394	exon5	c.G716A	p.C239Y	.	.	.
ATG7	10533	broad.mit.edu	36	3	11364359	11364359	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006395	exon12	c.C1134T	p.G378G	.	.	.
BOC	91653	broad.mit.edu	36	3	114452140	114452140	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033254	exon4	c.C146T	p.P49L	.	.	.
BOC	91653	broad.mit.edu	36	3	114474232	114474232	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033254	exon7	c.A953G	p.Q318R	.	.	.
SIDT1	54847	broad.mit.edu	36	3	114825213	114825213	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017699	exon23	c.C2250T	p.T750T	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114857104	114857104	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.C6115T	p.R2039C	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114857984	114857984	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.G5235T	p.Q1745H	.	.	.
ZNF80	7634	broad.mit.edu	36	3	115438291	115438291	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007136	exon1	c.C321T	p.C107C	.	.	.
LSAMP	4045	broad.mit.edu	36	3	117043393	117043393	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002338	exon6	c.T908C	p.L303P	.	.	.
PLA1A	51365	broad.mit.edu	36	3	120830357	120830357	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015900	exon10	c.C1241T	p.T414I	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122895683	122895683	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon13	c.A6362G	p.E2121G	.	.	.
PARP14	54625	broad.mit.edu	36	3	123882425	123882425	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017554	exon1	c.C5T	p.A2V	.	.	.
PARP14	54625	broad.mit.edu	36	3	123901289	123901289	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017554	exon6	c.G1198T	p.V400F	.	.	.
MYLK	4638	broad.mit.edu	36	3	124841863	124841863	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053025	exon28	c.A4798G	p.R1600G	.	.	.
MYLK	4638	broad.mit.edu	36	3	124935255	124935255	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053025	exon10	c.G1278T	p.K426N	.	.	.
KALRN	8997	broad.mit.edu	36	3	125466042	125466042	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003947	exon4	c.G265A	p.V89M	.	.	.
MKRN2	23609	broad.mit.edu	36	3	12585439	12585439	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014160	exon2	c.G92T	p.S31I	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127333007	127333007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012190	exon13	c.G1533A	p.A511A	 ALDH1L1,large_intestine,colon,Substitution - Missense,-1 	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127358994	127358994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012190	exon4	c.C410T	p.A137V	.	.	.
UROC1	131669	broad.mit.edu	36	3	127702287	127702287	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144639	exon11	c.G1086A	p.T362T	.	.	.
PLXNA1	5361	broad.mit.edu	36	3	128193069	128193069	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032242	exon2	c.C1347T	p.F449F	.	.	.
IQSEC1	9922	broad.mit.edu	36	3	12925003	12925003	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014869	exon12	c.C2643T	p.G881G	.	.	.
RUVBL1	8607	broad.mit.edu	36	3	129314433	129314433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003707	exon3	c.C349T	p.R117C	.	.	.
C3orf25	90288	broad.mit.edu	36	3	130610260	130610260	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207307	exon6	c.G1167A	p.R389R	.	.	.
C3orf25	90288	broad.mit.edu	36	3	130619801	130619801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207307	exon3	c.G667A	p.A223T	.	.	.
IFT122	55764	broad.mit.edu	36	3	130668528	130668528	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052989	exon8	c.C669T	p.Y223Y	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131768383	131768383	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon4	c.C1430T	p.A477V	.	.	.
CPNE4	131034	broad.mit.edu	36	3	133106948	133106948	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130808	exon2	c.C30T	p.S10S	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133655181	133655181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015268	exon8	c.C793T	p.R265C	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133661843	133661843	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015268	exon14	c.G1509A	p.S503S	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1342510	1342510	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon9	c.T958A	p.W320R	.	.	.
AMOTL2	51421	broad.mit.edu	36	3	135569118	135569118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016201	exon3	c.C952T	p.L318L	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136153173	136153173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004441	exon3	c.G394A	p.A132T	.	.	.
CHCHD4	131474	broad.mit.edu	36	3	14138468	14138468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144636	exon2	c.C11T	p.S4L	.	.	.
TRIM42	287015	broad.mit.edu	36	3	141884637	141884637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152616	exon2	c.G985A	p.A329T	.	.	.
RASA2	5922	broad.mit.edu	36	3	142755401	142755401	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006506	exon6	c.C540T	p.C180C	.	.	.
ATR	545	broad.mit.edu	36	3	143763928	143763928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon4	c.C1006T	p.R336W	.	.	.
SLC6A6	6533	broad.mit.edu	36	3	14483146	14483146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003043	exon7	c.G851A	p.R284H	.	.	.
ZIC1	7545	broad.mit.edu	36	3	148610880	148610880	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003412	exon1	c.G291A	p.T97T	.	.	.
FGD5	152273	broad.mit.edu	36	3	14914163	14914163	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152536	exon5	c.G2892T	p.E964D	.	.	.
PFN2	5217	broad.mit.edu	36	3	151168973	151168973	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002628	exon2	c.G187A	p.G63S	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151867265	151867265	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152394	exon13	c.A1727C	p.K576T	.	.	.
CAPN7	23473	broad.mit.edu	36	3	15263256	15263256	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014296	exon18	c.G2024A	p.C675Y	.	.	.
MBNL1	4154	broad.mit.edu	36	3	153500713	153500713	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207293	exon1	c.T41C	p.L14P	.	.	.
P2RY1	5028	broad.mit.edu	36	3	154036923	154036923	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002563	exon1	c.C662T	p.T221M	.	.	.
METTL6	131965	broad.mit.edu	36	3	15442993	15442993	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152396	exon2	c.G30T	p.Q10H	.	.	.
EAF1	85403	broad.mit.edu	36	3	15448637	15448637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033083	exon3	c.C238T	p.R80W	.	.	.
COLQ	8292	broad.mit.edu	36	3	15504771	15504771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005677	exon3	c.G267A	p.S89S	.	.	.
HACL1	26061	broad.mit.edu	36	3	15603077	15603077	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012260	exon6	c.C418T	p.R140C	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156694962	156694962	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130960	exon15	c.G1897T	p.A633S	.	.	.
MECOM	2122	broad.mit.edu	36	3	170323117	170323117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105077	exon6	c.G551A	p.R184H	.	.	.
LRRIQ4	344657	broad.mit.edu	36	3	171022723	171022723	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080460	exon1	c.T320C	p.F107S	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173507855	173507855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135095	exon10	c.C1070T	p.A357V	.	.	.
NAALADL2	254827	broad.mit.edu	36	3	176827798	176827798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207015	exon11	c.G1826A	p.R609H	.	.	.
KCNMB2	10242	broad.mit.edu	36	3	180028698	180028698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005832	exon5	c.C266T	p.A89V	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	 PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.
ZNF639	51193	broad.mit.edu	36	3	180533958	180533958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016331	exon7	c.C512T	p.P171L	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185179128	185179128	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005688	exon9	c.C1153T	p.R385C	.	.	.
HTR3E	285242	broad.mit.edu	36	3	185306314	185306314	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182589	exon6	c.C833T	p.A278V	.	.	.
HTR3E	285242	broad.mit.edu	36	3	185306796	185306796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182589	exon7	c.G1157A	p.G386D	.	.	.
ECE2	9718	broad.mit.edu	36	3	185477898	185477898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014693	exon4	c.C782T	p.T261I	.	.	.
THPO	7066	broad.mit.edu	36	3	185576443	185576443	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177597	exon3	c.C68T	p.P23L	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186629313	186629313	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon2	c.G250A	p.V84I	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186666272	186666272	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon9	c.C1432A	p.R478R	.	.	.
TBCCD1	55171	broad.mit.edu	36	3	187755413	187755413	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134415	exon5	c.C1014T	p.N338N	.	.	.
AHSG	197	broad.mit.edu	36	3	187821162	187821162	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001622	exon7	c.G853A	p.A285T	.	.	.
FETUB	26998	broad.mit.edu	36	3	187841139	187841139	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014375	exon1	c.C196T	p.R66X	.	.	.
MASP1	5648	broad.mit.edu	36	3	188436277	188436277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139125	exon11	c.C2076T	p.C692C	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19359136	19359136	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144633	exon4	c.C496T	p.R166W	.	.	.
GP5	2814	broad.mit.edu	36	3	195599700	195599700	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004488	exon2	c.C601A	p.L201I	.	.	.
GP5	2814	broad.mit.edu	36	3	195599847	195599847	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004488	exon2	c.G454A	p.A152T	.	.	.
ACAP2	23527	broad.mit.edu	36	3	196508599	196508599	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012287	exon13	c.G1046A	p.R349H	.	.	.
NCBP2	22916	broad.mit.edu	36	3	198148895	198148895	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007362	exon3	c.G282A	p.A94A	.	.	.
EFHB	151651	broad.mit.edu	36	3	19899167	19899167	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon12	c.G2207A	p.R736H	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25640153	25640153	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001068	exon21	c.T2569C	p.Y857H	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27437224	27437224	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003615	exon10	c.C1456T	p.R486X	.	.	.
CRBN	51185	broad.mit.edu	36	3	3167604	3167604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173482	exon11	c.C1271T	p.T424M	.	.	.
TRIM71	131405	broad.mit.edu	36	3	32834662	32834662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039111	exon1	c.C86T	p.S29L	.	.	.
MLH1	4292	broad.mit.edu	36	3	37028566	37028566	+	Missense_Mutation	SNP	C	T	T	rs63750380	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000249	exon8	c.C649T	p.R217C	.	.	.
LRRFIP2	9209	broad.mit.edu	36	3	37145592	37145592	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017724	exon4	c.T143C	p.I48T	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37338346	37338346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172713	exon14	c.C1732T	p.R578W	.	.	.
SLC22A13	9390	broad.mit.edu	36	3	38290864	38290864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004256	exon2	c.G476A	p.C159Y	.	.	.
MYRIP	25924	broad.mit.edu	36	3	40206831	40206831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015460	exon10	c.C1538T	p.P513L	.	.	.
ENTPD3	956	broad.mit.edu	36	3	40443840	40443840	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001248	exon11	c.C1427A	p.P476H	.	.	.
NKTR	4820	broad.mit.edu	36	3	42653674	42653674	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005385	exon13	c.T1474C	p.S492P	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43096931	43096931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032806	exon2	c.C997T	p.R333W	.	.	.
ZNF35	7584	broad.mit.edu	36	3	44675826	44675826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003420	exon4	c.C967T	p.R323W	.	.	.
LARS2	23395	broad.mit.edu	36	3	45532635	45532635	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015340	exon17	c.C1907T	p.T636M	.	.	.
SLC6A20	54716	broad.mit.edu	36	3	45787822	45787822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022405	exon5	c.G715A	p.A239T	.	.	.
CCR1	1230	broad.mit.edu	36	3	46219965	46219965	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001295	exon2	c.G844A	p.A282T	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4687444	4687444	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon20	c.G2038A	p.V680I	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47024808	47024808	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015175	exon51	c.G7751A	p.R2584H	.	.	.
PTPN23	25930	broad.mit.edu	36	3	47425519	47425519	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015466	exon16	c.G1580A	p.R527H	.	.	.
CSPG5	10675	broad.mit.edu	36	3	47589366	47589366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006574	exon3	c.G1196A	p.C399Y	.	.	.
DHX30	22907	broad.mit.edu	36	3	47864431	47864431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138615	exon14	c.G2267A	p.R756H	.	.	.
NME6	10201	broad.mit.edu	36	3	48311207	48311207	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005793	exon6	c.G509A	p.R170H	.	.	.
PFKFB4	5210	broad.mit.edu	36	3	48548799	48548799	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004567	exon8	c.T734C	p.I245T	.	.	.
QARS	5859	broad.mit.edu	36	3	49112841	49112841	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005051	exon12	c.C1031T	p.A344V	.	.	.
KLHDC8B	200942	broad.mit.edu	36	3	49185335	49185335	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173546	exon2	c.A129T	p.G43G	.	.	.
BSN	8927	broad.mit.edu	36	3	49665358	49665358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003458	exon5	c.C3365T	p.S1122F	.	.	.
SEMA3B	7869	broad.mit.edu	36	3	50287306	50287306	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004636	exon13	c.G1385A	p.R462Q	.	.	.
RBM15B	29890	broad.mit.edu	36	3	51405950	51405950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013286	exon1	c.G2080A	p.E694K	.	.	.
RAD54L2	23132	broad.mit.edu	36	3	51671594	51671594	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015106	exon22	c.G3522T	p.E1174D	.	.	.
RRP9	9136	broad.mit.edu	36	3	51944509	51944509	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004704	exon10	c.C860A	p.A287D	.	.	.
EDEM1	9695	broad.mit.edu	36	3	5218542	5218542	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014674	exon4	c.C791G	p.A264G	.	.	.
NISCH	11188	broad.mit.edu	36	3	52487593	52487593	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007184	exon11	c.G1262A	p.R421Q	.	.	.
NEK4	6787	broad.mit.edu	36	3	52748556	52748556	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193533	exon13	c.G1961A	p.R654Q	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52799959	52799959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166434	exon18	c.C2050T	p.R684W	.	.	.
TKT	7086	broad.mit.edu	36	3	53250277	53250277	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135055	exon3	c.G250A	p.A84T	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54636884	54636884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018398	exon10	c.G994A	p.A332T	.	.	.
SPATA12	353324	broad.mit.edu	36	3	57082763	57082763	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181727	exon2	c.A1G	p.M1V	.	.	.
APPL1	26060	broad.mit.edu	36	3	57268942	57268942	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012096	exon17	c.C1513T	p.R505X	.	.	.
ARF4	378	broad.mit.edu	36	3	57536325	57536325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001660	exon5	c.G446A	p.R149H	.	.	.
FAM116A	201627	broad.mit.edu	36	3	57594105	57594105	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152678	exon15	c.G1280A	p.R427H	.	.	.
FLNB	2317	broad.mit.edu	36	3	58063033	58063033	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164317	exon9	c.G1409A	p.R470Q	.	.	.
FLNB	2317	broad.mit.edu	36	3	58082140	58082140	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164317	exon20	c.G2996A	p.R999Q	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62229850	62229850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002841	exon20	c.G2975A	p.R992H	.	.	.
ATXN7	6314	broad.mit.edu	36	3	63940659	63940659	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177387	exon5	c.G528A	p.P176P	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65317548	65317548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033057	exon23	c.G3934A	p.A1312T	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65439453	65439453	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015520	exon4	c.C611T	p.T204M	.	.	.
KBTBD8	84541	broad.mit.edu	36	3	67137020	67137020	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032505	exon3	c.G939A	p.R313R	.	.	.
LMOD3	56203	broad.mit.edu	36	3	69253963	69253963	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198271	exon1	c.C265T	p.R89X	.	.	.
GXYLT2	727936	broad.mit.edu	36	3	73099443	73099443	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080393	exon6	c.C1032T	p.Y344Y	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73516478	73516478	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015009	exon10	c.C1929T	p.C643C	.	.	.
LMCD1	29995	broad.mit.edu	36	3	8565555	8565555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014583	exon4	c.G689A	p.G230D	.	.	.
C3orf32	51066	broad.mit.edu	36	3	8650622	8650622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015931	exon4	c.G3A	p.M1I	.	.	.
POU1F1	5449	broad.mit.edu	36	3	87405253	87405253	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122757	exon2	c.G226T	p.G76X	.	.	.
BRPF1	7862	broad.mit.edu	36	3	9751020	9751020	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004634	exon2	c.C196T	p.R66C	.	.	.
TTLL3	26140	broad.mit.edu	36	3	9846013	9846013	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025930	exon10	c.C1917T	p.R639R	.	.	.
OR5K4	403278	broad.mit.edu	36	3	99555786	99555786	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005517	exon1	c.C399T	p.H133H	.	.	.
ALCAM	214	broad.mit.edu	36	3	106748791	106748792	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001627	exon10	c.1213_1214del	p.405_405del	.	.	.
NKTR	4820	broad.mit.edu	36	3	42654716	42654716	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005385	exon13	c.2516delA	p.E839fs	.	.	.
FRYL	285527	broad.mit.edu	36	4	48298839	48298840	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015030	exon13	c.990_991insT	p.L330fs	.	.	.
TACR3	6870	broad.mit.edu	36	4	104796837	104796837	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001059	exon3	c.G851T	p.C284F	.	.	.
TBCK	93627	broad.mit.edu	36	4	107334225	107334225	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163437	exon22	c.C1932T	p.S644S	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109040236	109040236	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136257	exon3	c.G512A	p.C171Y	.	.	.
ANK2	287	broad.mit.edu	36	4	114493778	114493778	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.G4555A	p.A1519T	.	.	.
ANK2	287	broad.mit.edu	36	4	114494811	114494811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.C5588T	p.T1863M	.	.	.
ANK2	287	broad.mit.edu	36	4	114495140	114495140	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.C5917T	p.P1973S	.	.	.
UGT8	7368	broad.mit.edu	36	4	115764050	115764050	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128174	exon2	c.A565G	p.N189D	.	.	.
NDST4	64579	broad.mit.edu	36	4	115993426	115993426	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022569	exon8	c.A1720C	p.N574H	.	.	.
C4orf3	401152	broad.mit.edu	36	4	120441034	120441034	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170330	exon2	c.G504T	p.G168G	.	.	.
ANXA5	308	broad.mit.edu	36	4	122825322	122825322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001154	exon4	c.G149A	p.R50H	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123427190	123427190	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon51	c.C9082T	p.R3028C	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123485073	123485073	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon72	c.C12640T	p.R4214W	.	.	.
ADAD1	132612	broad.mit.edu	36	4	123548576	123548576	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139243	exon8	c.C788T	p.P263L	.	.	.
FAT4	79633	broad.mit.edu	36	4	126458378	126458378	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G1362A	p.A454A	.	.	.
FAT4	79633	broad.mit.edu	36	4	126586965	126586965	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon8	c.G7261A	p.A2421T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126609150	126609150	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon11	c.A11933G	p.Y3978C	.	.	.
SCLT1	132320	broad.mit.edu	36	4	130110983	130110983	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144643	exon10	c.G777T	p.K259N	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13210599	13210599	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148894	exon10	c.C7023T	p.S2341S	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292128	134292128	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon1	c.G1383A	p.P461P	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147781206	147781206	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004575	exon2	c.C1026T	p.G342G	.	.	.
CC2D2A	57545	broad.mit.edu	36	4	15126656	15126656	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080522	exon11	c.C948T	p.T316T	.	.	.
PET112L	5188	broad.mit.edu	36	4	152848679	152848679	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004564	exon6	c.A788G	p.N263S	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154733114	154733114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon18	c.C1847T	p.P616L	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155376141	155376141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.C7748T	p.A2583V	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155472255	155472255	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon10	c.A2295G	p.T765T	.	.	.
PROM1	8842	broad.mit.edu	36	4	15619726	15619726	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145849	exon11	c.C1245A	p.N415K	 PROM1,kidney,NS,Substitution - coding silent,0 	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160472266	160472266	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014247	exon9	c.C1127T	p.A376V	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160490878	160490878	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014247	exon20	c.T3369C	p.S1123S	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160494189	160494189	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014247	exon22	c.G3709A	p.A1237T	.	.	.
KLHL2	11275	broad.mit.edu	36	4	166451261	166451261	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161521	exon10	c.C1158T	p.S386S	.	.	.
C4orf27	54969	broad.mit.edu	36	4	170899822	170899822	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017867	exon5	c.C509T	p.T170M	.	.	.
NCAPG	64151	broad.mit.edu	36	4	17425619	17425619	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022346	exon4	c.G590A	p.R197Q	.	.	.
WDR17	116966	broad.mit.edu	36	4	177319094	177319094	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181265	exon20	c.C2697T	p.S899S	.	.	.
ASB5	140458	broad.mit.edu	36	4	177375140	177375140	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080874	exon6	c.A685C	p.K229Q	.	.	.
AGA	175	broad.mit.edu	36	4	178592592	178592592	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171988	exon7	c.C714T	p.D238D	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183912629	183912629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon21	c.G4115A	p.R1372H	.	.	.
IRF2	3660	broad.mit.edu	36	4	185587147	185587147	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002199	exon2	c.G66A	p.P22P	.	.	.
LRP2BP	55805	broad.mit.edu	36	4	186528958	186528958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018409	exon7	c.G808A	p.A270T	.	.	.
SORBS2	8470	broad.mit.edu	36	4	186820253	186820253	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145672	exon5	c.C300T	p.L100L	.	.	.
FAT1	2195	broad.mit.edu	36	4	187761646	187761646	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon19	c.C11028T	p.N3676N	.	.	.
FAT1	2195	broad.mit.edu	36	4	187777368	187777368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.G7366A	p.A2456T	.	.	.
FAT1	2195	broad.mit.edu	36	4	187777867	187777867	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.G6867A	p.A2289A	.	.	.
WHSC1	7468	broad.mit.edu	36	4	1911238	1911238	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133331	exon10	c.G1816A	p.A606T	.	.	.
PPARGC1A	10891	broad.mit.edu	36	4	23442375	23442375	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013261	exon3	c.C332T	p.A111V	.	.	.
NOP14	8602	broad.mit.edu	36	4	2929210	2929210	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003703	exon2	c.G251T	p.R84I	.	.	.
HTT	3064	broad.mit.edu	36	4	3200413	3200413	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon59	c.G7988A	p.R2663Q	.	.	.
HTT	3064	broad.mit.edu	36	4	3210122	3210122	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon65	c.C9042T	p.T3014T	.	.	.
C4orf44	345222	broad.mit.edu	36	4	3224894	3224894	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042690	exon2	c.G483A	p.S161S	.	.	.
RGS12	6002	broad.mit.edu	36	4	3288381	3288381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002926	exon2	c.C686T	p.A229V	.	.	.
HGFAC	3083	broad.mit.edu	36	4	3415856	3415856	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001528	exon6	c.C619A	p.R207S	.	.	.
LRPAP1	4043	broad.mit.edu	36	4	3491679	3491679	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002337	exon3	c.C389T	p.A130V	.	.	.
ZNF141	7700	broad.mit.edu	36	4	357516	357516	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003441	exon4	c.A1290C	p.K430N	.	.	.
TBC1D1	23216	broad.mit.edu	36	4	37793842	37793842	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015173	exon16	c.G2674T	p.G892C	.	.	.
WDR19	57728	broad.mit.edu	36	4	38894115	38894115	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025132	exon12	c.T1139A	p.L380Q	.	.	.
WDR19	57728	broad.mit.edu	36	4	38956174	38956174	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025132	exon35	c.C3869T	p.T1290M	.	.	.
KLB	152831	broad.mit.edu	36	4	39126572	39126572	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175737	exon5	c.T3006C	p.C1002C	.	.	.
PHOX2B	8929	broad.mit.edu	36	4	41444146	41444146	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003924	exon2	c.G406A	p.D136N	.	.	.
LYAR	55646	broad.mit.edu	36	4	4334503	4334503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145725	exon4	c.G145A	p.V49M	.	.	.
ZBTB49	166793	broad.mit.edu	36	4	4354845	4354845	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145291	exon3	c.C381T	p.G127G	.	.	.
KCTD8	386617	broad.mit.edu	36	4	43871891	43871891	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198353	exon2	c.G1095T	p.E365D	.	.	.
STK32B	55351	broad.mit.edu	36	4	5192559	5192559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018401	exon2	c.C79T	p.R27W	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52556691	52556691	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024611	exon4	c.C1254T	p.N418N	.	.	.
CLOCK	9575	broad.mit.edu	36	4	55999306	55999306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004898	exon22	c.C2261T	p.T754M	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56874129	56874129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020722	exon7	c.G364A	p.V122I	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56876225	56876225	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020722	exon8	c.C1800T	p.G600G	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56876612	56876612	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020722	exon8	c.C2187T	p.S729S	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56877597	56877597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020722	exon8	c.G3172A	p.E1058K	.	.	.
REST	5978	broad.mit.edu	36	4	57472219	57472219	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193508	exon2	c.C658T	p.R220C	.	.	.
C4orf14	84273	broad.mit.edu	36	4	57524540	57524540	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032313	exon7	c.C1930T	p.R644X	.	.	.
EVC	2121	broad.mit.edu	36	4	5806541	5806541	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153717	exon10	c.G1444T	p.D482Y	.	.	.
PDE6B	5158	broad.mit.edu	36	4	650333	650333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145292	exon18	c.G1445A	p.R482Q	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65952699	65952699	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004439	exon8	c.T1778C	p.L593P	.	.	.
GNRHR	2798	broad.mit.edu	36	4	68288873	68288873	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000406	exon3	c.C907A	p.P303T	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70114529	70114529	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001073	exon1	c.G501A	p.R167R	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70489852	70489852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006798	exon6	c.G1411A	p.A471T	.	.	.
CSN3	1448	broad.mit.edu	36	4	71149502	71149502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005212	exon4	c.C286T	p.R96W	.	.	.
ENAM	10117	broad.mit.edu	36	4	71728249	71728249	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031889	exon9	c.G2242A	p.V748I	.	.	.
ENAM	10117	broad.mit.edu	36	4	71728743	71728743	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031889	exon9	c.C2736T	p.D912D	.	.	.
NPFFR2	10886	broad.mit.edu	36	4	73116599	73116599	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004885	exon1	c.C117T	p.R39R	.	.	.
NPFFR2	10886	broad.mit.edu	36	4	73231749	73231749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144756	exon5	c.C628T	p.R210W	.	.	.
RASSF6	166824	broad.mit.edu	36	4	74669779	74669779	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177532	exon6	c.A549G	p.G183G	.	.	.
BTC	685	broad.mit.edu	36	4	75900190	75900190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001729	exon3	c.C184T	p.R62W	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77466168	77466168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042784	exon22	c.C3023T	p.A1008V	.	.	.
SHROOM3	57619	broad.mit.edu	36	4	77910922	77910922	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020859	exon10	c.C5469T	p.S1823S	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80052124	80052124	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198892	exon16	c.G3399A	p.V1133V	.	.	.
ABLIM2	84448	broad.mit.edu	36	4	8037517	8037517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130083	exon18	c.G1684A	p.A562T	.	.	.
RASGEF1B	153020	broad.mit.edu	36	4	82596921	82596921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152545	exon4	c.G346A	p.E116K	.	.	.
SEC31A	22872	broad.mit.edu	36	4	83982489	83982489	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001191049	exon21	c.C2781A	p.A927A	.	.	.
HPSE	10855	broad.mit.edu	36	4	84449058	84449058	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098540	exon8	c.C1055T	p.A352V	.	.	.
CDS1	1040	broad.mit.edu	36	4	85759697	85759697	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001263	exon5	c.C567A	p.A189A	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85819403	85819403	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon65	c.C9840T	p.D3280D	.	.	.
GAK	2580	broad.mit.edu	36	4	861523	861523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005255	exon16	c.C1736T	p.A579V	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87872825	87872825	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080684	exon12	c.C1740T	p.N580N	.	.	.
HERC6	55008	broad.mit.edu	36	4	89557639	89557639	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017912	exon13	c.C1597T	p.R533C	.	.	.
HERC5	51191	broad.mit.edu	36	4	89627269	89627269	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016323	exon15	c.C1878T	p.C626C	.	.	.
WDR1	9948	broad.mit.edu	36	4	9714647	9714647	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017491	exon3	c.C200T	p.A67V	.	.	.
BBS12	166379	broad.mit.edu	36	4	123884172	123884172	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178007	exon3	c.1675delA	p.K559fs	.	.	.
UGDH	7358	broad.mit.edu	36	4	39192148	39192148	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184700	exon3	c.214delT	p.S72fs	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54824847	54824847	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon4	c.624delA	p.L208fs	.	.	.
PAM	5066	broad.mit.edu	36	5	102323605	102323605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138822	exon12	c.G1033A	p.A345T	.	.	.
CMBL	134147	broad.mit.edu	36	5	10343710	10343710	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138809	exon2	c.G165A	p.Q55Q	.	.	.
ROPN1L	83853	broad.mit.edu	36	5	10501383	10501383	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031916	exon2	c.C143A	p.A48D	.	.	.
CAMK4	814	broad.mit.edu	36	5	110842079	110842079	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001744	exon9	c.A803G	p.E268G	.	.	.
SLC12A7	10723	broad.mit.edu	36	5	1110717	1110717	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006598	exon22	c.A2895G	p.A965A	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11170571	11170571	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon13	c.C2268T	p.I756I	.	.	.
APC	324	broad.mit.edu	36	5	112182670	112182670	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon8	c.C988T	p.R330X	.	.	.
APC	324	broad.mit.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon12	c.C1636T	p.R546X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203386	112203386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.G4142A	p.R1381H	.	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
DCP2	167227	broad.mit.edu	36	5	112364764	112364764	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152624	exon5	c.C517T	p.R173C	.	.	.
SEMA6A	57556	broad.mit.edu	36	5	115843785	115843785	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020796	exon12	c.G1182A	p.T394T	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118541058	118541058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005509	exon27	c.C6866T	p.T2289M	.	.	.
HSD17B4	3295	broad.mit.edu	36	5	118894905	118894905	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000414	exon22	c.C1900T	p.R634C	.	.	.
FBN2	2201	broad.mit.edu	36	5	127665013	127665013	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon47	c.C6006T	p.N2002N	.	.	.
FBN2	2201	broad.mit.edu	36	5	127707978	127707978	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon25	c.C3341T	p.T1114M	.	.	.
IL13	3596	broad.mit.edu	36	5	132021785	132021785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002188	exon1	c.C8T	p.P3L	.	.	.
TCF7	6932	broad.mit.edu	36	5	133502605	133502605	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003202	exon5	c.G612A	p.G204G	.	.	.
KLHL3	26249	broad.mit.edu	36	5	137041163	137041163	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017415	exon6	c.C606T	p.S202S	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13774176	13774176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon71	c.G12212A	p.R4071H	.	.	.
ETF1	2107	broad.mit.edu	36	5	137875094	137875094	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004730	exon7	c.C831T	p.N277N	.	.	.
HSPA9	3313	broad.mit.edu	36	5	137925176	137925176	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004134	exon10	c.A1174G	p.M392V	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13823875	13823875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon56	c.G9588A	p.V3196V	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138288877	138288877	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon13	c.C1781T	p.A594V	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138296212	138296212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon17	c.G2345A	p.R782H	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13921029	13921029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon25	c.C3907T	p.H1303Y	.	.	.
APBB3	10307	broad.mit.edu	36	5	139920805	139920805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133174	exon9	c.C892T	p.P298S	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140147614	140147614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031410	exon1	c.G1555A	p.A519T	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140162405	140162405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031497	exon1	c.G1439A	p.R480Q	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140167452	140167452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031500	exon1	c.G496A	p.A166T	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140188045	140188045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018909	exon1	c.G185A	p.R62H	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140203287	140203287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031856	exon1	c.C2197T	p.R733W	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140209325	140209325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014005	exon1	c.C1061T	p.T354M	.	.	.
PCDHA11	56138	broad.mit.edu	36	5	140229961	140229961	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031861	exon1	c.G1089T	p.Q363H	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140242581	140242581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031865	exon1	c.G544A	p.A182T	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140483138	140483138	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018938	exon1	c.C1374T	p.F458F	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140510838	140510838	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018939	exon1	c.G816A	p.S272S	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140511659	140511659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018939	exon1	c.G1637A	p.R546H	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140705936	140705936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018916	exon1	c.C2152T	p.R718C	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140711737	140711737	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018922	exon1	c.C1726T	p.R576C	.	.	.
PCDHGA4	56111	broad.mit.edu	36	5	140715189	140715189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018917	exon1	c.C238T	p.R80C	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140735042	140735042	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032086	exon1	c.G1208A	p.R403Q	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140758761	140758761	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032099	exon1	c.G883A	p.G295R	.	.	.
PCDHGA9	56107	broad.mit.edu	36	5	140762888	140762888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018921	exon1	c.G185A	p.R62H	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140778472	140778472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032101	exon1	c.G862A	p.A288T	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140779499	140779499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032101	exon1	c.G1889A	p.R630H	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140781538	140781538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018914	exon1	c.C560T	p.T187M	.	.	.
PCDHGC5	56097	broad.mit.edu	36	5	140851027	140851027	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018929	exon1	c.A2036G	p.D679G	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141007169	141007169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033449	exon9	c.G808A	p.G270R	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141039977	141039977	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022481	exon2	c.G261A	p.P87P	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141315344	141315344	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016580	exon1	c.C2257T	p.R753W	.	.	.
YIPF5	81555	broad.mit.edu	36	5	143523911	143523911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030799	exon4	c.G386A	p.G129D	.	.	.
TRIO	7204	broad.mit.edu	36	5	14417857	14417857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon15	c.G2686A	p.A896T	.	.	.
TRIO	7204	broad.mit.edu	36	5	14535709	14535709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon46	c.G6484A	p.G2162S	.	.	.
RBM27	54439	broad.mit.edu	36	5	145644381	145644381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018989	exon20	c.G2992A	p.A998T	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147021145	147021145	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon3	c.G186A	p.E62E	.	.	.
SH3TC2	79628	broad.mit.edu	36	5	148386785	148386785	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024577	exon11	c.G2703T	p.Q901H	.	.	.
SH3TC2	79628	broad.mit.edu	36	5	148407632	148407632	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024577	exon3	c.C265T	p.R89C	.	.	.
PCYOX1L	78991	broad.mit.edu	36	5	148728304	148728304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024028	exon6	c.C1379T	p.A460V	.	.	.
CSNK1A1	1452	broad.mit.edu	36	5	148866795	148866795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001892	exon8	c.G845A	p.R282H	.	.	.
ARHGEF37	389337	broad.mit.edu	36	5	148981573	148981573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001669	exon9	c.C1090T	p.R364C	.	.	.
ARHGEF37	389337	broad.mit.edu	36	5	148983783	148983783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001669	exon10	c.G1351A	p.V451I	.	.	.
ARHGEF37	389337	broad.mit.edu	36	5	148988585	148988585	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001669	exon12	c.G1681A	p.A561T	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149477454	149477454	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002609	exon22	c.C3057T	p.N1019N	.	.	.
RBM22	55696	broad.mit.edu	36	5	150058288	150058288	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018047	exon4	c.T237C	p.N79N	.	.	.
ANXA6	309	broad.mit.edu	36	5	150491002	150491002	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001155	exon11	c.C778A	p.L260I	.	.	.
GM2A	2760	broad.mit.edu	36	5	150613007	150613007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167607	exon1	c.C37A	p.L13M	.	.	.
FAT2	2196	broad.mit.edu	36	5	150891391	150891391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon13	c.G9761A	p.R3254H	.	.	.
FAT2	2196	broad.mit.edu	36	5	150903968	150903968	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.C6913T	p.R2305C	.	.	.
FAT2	2196	broad.mit.edu	36	5	150905231	150905231	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.C5650T	p.P1884S	.	.	.
G3BP1	10146	broad.mit.edu	36	5	151163724	151163724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005754	exon12	c.G1280A	p.R427H	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154374305	154374305	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099293	exon1	c.C693T	p.S231S	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156693027	156693027	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037333	exon21	c.A2380G	p.I794V	.	.	.
ADAM19	8728	broad.mit.edu	36	5	156879519	156879519	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033274	exon6	c.C506T	p.P169L	.	.	.
SOX30	11063	broad.mit.edu	36	5	156998162	156998162	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178424	exon4	c.C1534T	p.R512C	.	.	.
SOX30	11063	broad.mit.edu	36	5	157006339	157006339	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007017	exon3	c.T1271C	p.F424S	.	.	.
SOX30	11063	broad.mit.edu	36	5	157011151	157011151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007017	exon1	c.G514A	p.G172R	.	.	.
GABRB2	2561	broad.mit.edu	36	5	160685954	160685954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021911	exon10	c.C1190T	p.T397M	.	.	.
GABRA6	2559	broad.mit.edu	36	5	161049793	161049793	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000811	exon7	c.G682A	p.V228I	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167607858	167607858	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon27	c.A7309G	p.K2437E	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169048850	169048850	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon9	c.C778T	p.R260X	.	.	.
FBXW11	23291	broad.mit.edu	36	5	171270190	171270190	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033645	exon2	c.G262A	p.A88T	.	.	.
NKX2-5	1482	broad.mit.edu	36	5	172592668	172592668	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004387	exon2	c.A485G	p.Y162C	.	.	.
FAF2	23197	broad.mit.edu	36	5	175853634	175853634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014613	exon6	c.G512A	p.R171H	.	.	.
TSPAN17	26262	broad.mit.edu	36	5	176016412	176016412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006616	exon7	c.G736A	p.A246T	.	.	.
HK3	3101	broad.mit.edu	36	5	176247133	176247133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002115	exon11	c.G1525T	p.A509S	.	.	.
DDX41	51428	broad.mit.edu	36	5	176871527	176871527	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016222	exon17	c.C1740T	p.R580R	.	.	.
FAM193B	54540	broad.mit.edu	36	5	176895994	176895994	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190946	exon4	c.G1047A	p.P349P	.	.	.
COL23A1	91522	broad.mit.edu	36	5	177647945	177647945	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173465	exon5	c.C427T	p.R143X	.	.	.
ZNF354B	117608	broad.mit.edu	36	5	178242814	178242814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058230	exon5	c.G755A	p.S252N	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178438437	178438437	+	Missense_Mutation	SNP	A	G	G	rs57271258	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014594	exon5	c.A398G	p.E133G	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178439046	178439046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014594	exon5	c.C1007T	p.A336V	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178495548	178495548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014244	exon13	c.G2053A	p.A685T	.	.	.
MGAT4B	11282	broad.mit.edu	36	5	179158567	179158567	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014275	exon11	c.G1310A	p.R437H	.	.	.
FLT4	2324	broad.mit.edu	36	5	179973723	179973723	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182925	exon24	c.G3282C	p.Q1094H	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23563343	23563343	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon11	c.A2389G	p.T797A	.	.	.
CDH10	1008	broad.mit.edu	36	5	24547365	24547365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon6	c.G830A	p.R277Q	.	.	.
CDH9	1007	broad.mit.edu	36	5	26917037	26917037	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon12	c.G2335A	p.D779N	.	.	.
SDHA	6389	broad.mit.edu	36	5	304567	304567	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004168	exon13	c.C1778T	p.A593V	.	.	.
SDHA	6389	broad.mit.edu	36	5	309514	309514	+	Silent	SNP	G	C	C	rs1042446	byFrequency	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004168	exon15	c.G1974C	p.P658P	.	.	.
CDH6	1004	broad.mit.edu	36	5	31358882	31358882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004932	exon12	c.G2083A	p.E695K	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31507928	31507928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon16	c.C2240T	p.T747M	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32073127	32073127	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon6	c.G1441A	p.G481S	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32126157	32126157	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon19	c.G6846A	p.P2282P	.	.	.
GOLPH3	64083	broad.mit.edu	36	5	32162268	32162268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022130	exon4	c.G704A	p.R235H	.	.	.
PDCD6	10016	broad.mit.edu	36	5	364467	364467	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013232	exon5	c.C427T	p.R143W	.	.	.
SLC1A3	6507	broad.mit.edu	36	5	36712806	36712806	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166695	exon5	c.C623T	p.T208M	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37088266	37088266	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon42	c.A7104G	p.Q2368Q	.	.	.
OSMR	9180	broad.mit.edu	36	5	38940282	38940282	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003999	exon9	c.C1205T	p.A402V	.	.	.
HMGCS1	3157	broad.mit.edu	36	5	43331687	43331687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002130	exon5	c.C829T	p.R277W	.	.	.
NNT	23530	broad.mit.edu	36	5	43691832	43691832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182977	exon15	c.G2193A	p.T731T	.	.	.
HCN1	348980	broad.mit.edu	36	5	45298544	45298544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon8	c.G1909A	p.A637T	.	.	.
HCN1	348980	broad.mit.edu	36	5	45497810	45497810	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon3	c.C906T	p.I302I	.	.	.
ITGA2	3673	broad.mit.edu	36	5	52392622	52392622	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002203	exon12	c.C1447T	p.R483X	.	.	.
SLC9A3	6550	broad.mit.edu	36	5	530552	530552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004174	exon11	c.G1655A	p.R552H	.	.	.
SNX18	112574	broad.mit.edu	36	5	53850784	53850784	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145427	exon1	c.C1245T	p.P415P	.	.	.
PPAP2A	8611	broad.mit.edu	36	5	54756905	54756905	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176895	exon6	c.G744A	p.S248S	.	.	.
SLC38A9	153129	broad.mit.edu	36	5	55004267	55004267	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173514	exon4	c.G127A	p.E43K	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5514142	5514142	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015325	exon13	c.G1695A	p.K565K	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56213401	56213401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005921	exon14	c.G2617A	p.V873I	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56814180	56814180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017992	exon1	c.C112T	p.R38C	.	.	.
ERCC8	1161	broad.mit.edu	36	5	60249954	60249954	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000082	exon4	c.C294T	p.H98H	.	.	.
ADAMTS6	11174	broad.mit.edu	36	5	64594514	64594514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197941	exon13	c.G1652A	p.G551D	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65357085	65357085	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018695	exon11	c.C839T	p.T280M	.	.	.
SREK1	140890	broad.mit.edu	36	5	65509166	65509166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139168	exon12	c.G1301A	p.R434H	.	.	.
MAST4	375449	broad.mit.edu	36	5	66461811	66461811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015183	exon14	c.G1196A	p.R399Q	.	.	.
RAD17	5884	broad.mit.edu	36	5	68727984	68727984	+	Missense_Mutation	SNP	G	A	A	rs17236478	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133341	exon13	c.G1169A	p.R390H	.	.	.
FAM169A	26049	broad.mit.edu	36	5	74136118	74136118	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015566	exon8	c.G868A	p.E290K	.	.	.
COL4A3BP	10087	broad.mit.edu	36	5	74717543	74717543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130105	exon14	c.G1741A	p.V581I	.	.	.
POLK	51426	broad.mit.edu	36	5	74900952	74900952	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016218	exon4	c.G287T	p.S96I	.	.	.
OTP	23440	broad.mit.edu	36	5	76968437	76968437	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032109	exon2	c.G412A	p.A138T	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78376091	78376091	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013391	exon6	c.A786C	p.E262D	.	.	.
JMY	133746	broad.mit.edu	36	5	78631745	78631745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152405	exon5	c.G1541A	p.R514Q	.	.	.
RPS23	6228	broad.mit.edu	36	5	81608025	81608025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025	exon3	c.G233A	p.G78D	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88136220	88136220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193350	exon3	c.C209T	p.T70M	.	.	.
GPR98	84059	broad.mit.edu	36	5	89959204	89959204	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon7	c.G1093T	p.D365Y	.	.	.
GPR98	84059	broad.mit.edu	36	5	89960393	89960393	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon8	c.C1497T	p.S499S	.	.	.
GPR98	84059	broad.mit.edu	36	5	89975485	89975485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon14	c.G2663A	p.G888D	.	.	.
CHD1	1105	broad.mit.edu	36	5	98240042	98240042	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001270	exon23	c.C3358T	p.R1120W	.	.	.
FAM173B	134145	broad.mit.edu	36	5	10280605	10280605	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199133	exon5	c.650delG	p.R217fs	.	.	.
H2AFY	9555	broad.mit.edu	36	5	134733184	134733184	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004893	exon4	c.288delA	p.K96fs	.	.	.
SPINK7	84651	broad.mit.edu	36	5	147673149	147673149	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032566	exon2	c.81delA	p.P27fs	.	.	.
MIER3	166968	broad.mit.edu	36	5	56255513	56255518	+	In_Frame_Del	DEL	ATGGTT	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	ATGGTT	ATGGTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152622	exon11	c.1030_1035del	p.344_345del	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77370663	77370663	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003664	exon23	c.2769delA	p.K923fs	.	.	.
FLJ33360	401172	broad.mit.edu	36	5	6390303	6390303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CCNC	892	broad.mit.edu	36	6	100115990	100115990	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005190	exon4	c.T268C	p.C90R	.	.	.
C6orf203	51250	broad.mit.edu	36	6	107468084	107468084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142470	exon3	c.C442T	p.R148W	.	.	.
BEND3	57673	broad.mit.edu	36	6	107496796	107496796	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080450	exon5	c.C2292T	p.S764S	.	.	.
BEND3	57673	broad.mit.edu	36	6	107526588	107526588	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080450	exon4	c.G100A	p.V34M	.	.	.
MICAL1	64780	broad.mit.edu	36	6	109876699	109876699	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159291	exon11	c.C1335T	p.S445S	.	.	.
MICAL1	64780	broad.mit.edu	36	6	109881715	109881715	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159291	exon3	c.C285T	p.C95C	.	.	.
ZBTB24	9841	broad.mit.edu	36	6	109904821	109904821	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014797	exon3	c.C958T	p.R320X	.	.	.
FIG4	9896	broad.mit.edu	36	6	110163194	110163194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014845	exon6	c.G646A	p.G216R	.	.	.
CDK19	23097	broad.mit.edu	36	6	111054927	111054927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015076	exon7	c.G761A	p.R254Q	.	.	.
REV3L	5980	broad.mit.edu	36	6	111801032	111801032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon13	c.G5219A	p.R1740H	.	.	.
FYN	2534	broad.mit.edu	36	6	112147888	112147888	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002037	exon4	c.C60T	p.G20G	.	.	.
ROS1	6098	broad.mit.edu	36	6	117813574	117813574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon15	c.G2269A	p.G757S	.	.	.
MCM9	254394	broad.mit.edu	36	6	119286772	119286772	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153255	exon3	c.T524C	p.L175S	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119337352	119337352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024581	exon14	c.G2855A	p.R952Q	.	.	.
GJA1	2697	broad.mit.edu	36	6	121810777	121810777	+	Missense_Mutation	SNP	G	A	A	rs2227885	byFrequency	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000165	exon2	c.G1085A	p.R362Q	.	.	.
CLVS2	134829	broad.mit.edu	36	6	123360787	123360787	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010852	exon2	c.C166T	p.R56C	.	.	.
NKAIN2	154215	broad.mit.edu	36	6	124167070	124167070	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153355	exon1	c.C26T	p.T9M	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127839173	127839173	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012279	exon6	c.A1691T	p.Y564F	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129678879	129678879	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon27	c.G3928A	p.E1310K	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132952356	132952356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003967	exon1	c.G163A	p.V55M	.	.	.
VNN2	8875	broad.mit.edu	36	6	133112545	133112545	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004665	exon6	c.G1353A	p.L451L	.	.	.
C6orf192	116843	broad.mit.edu	36	6	133159908	133159908	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052831	exon2	c.C89T	p.S30L	.	.	.
TBC1D7	51256	broad.mit.edu	36	6	13429172	13429172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143965	exon4	c.C328T	p.R110C	.	.	.
SGK1	6446	broad.mit.edu	36	6	134624787	134624787	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143676	exon2	c.T262G	p.W88G	.	.	.
MYB	4602	broad.mit.edu	36	6	135555298	135555298	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161657	exon6	c.C671T	p.A224V	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138601389	138601389	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020340	exon6	c.T471C	p.T157T	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138656898	138656898	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020340	exon20	c.G3444A	p.S1148S	.	.	.
REPS1	85021	broad.mit.edu	36	6	139308129	139308129	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031922	exon4	c.G548A	p.R183H	.	.	.
C6orf115	58527	broad.mit.edu	36	6	139405590	139405590	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021243	exon3	c.C103T	p.R35C	.	.	.
GPR126	57211	broad.mit.edu	36	6	142782818	142782818	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032394	exon21	c.G3119A	p.R1040H	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143133276	143133276	+	Silent	SNP	G	A	A	rs34191067	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006734	exon5	c.C4293T	p.S1431S	.	.	.
UTRN	7402	broad.mit.edu	36	6	145198713	145198713	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon69	c.G9770T	p.R3257M	.	.	.
PPIL4	85313	broad.mit.edu	36	6	149898500	149898500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139126	exon5	c.C389T	p.T130I	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151307378	151307378	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015440	exon14	c.G1504A	p.A502T	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151711668	151711668	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.C449A	p.P150H	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151713372	151713372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.G2153A	p.G718E	.	.	.
ZBTB2	57621	broad.mit.edu	36	6	151736385	151736385	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020861	exon2	c.G81A	p.T27T	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151978288	151978288	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon10	c.G1728T	p.Q576H	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152656533	152656533	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon10	c.G1467A	p.Q489Q	.	.	.
RBM16	22828	broad.mit.edu	36	6	155168258	155168258	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014892	exon9	c.G927A	p.Q309Q	.	.	.
ARID1B	57492	broad.mit.edu	36	6	157529990	157529990	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017519	exon9	c.G2965A	p.A989T	.	.	.
ARID1B	57492	broad.mit.edu	36	6	157566752	157566752	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017519	exon18	c.C4916T	p.T1639M	.	.	.
SNX9	51429	broad.mit.edu	36	6	158283827	158283827	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016224	exon18	c.G1757T	p.R586M	.	.	.
TULP4	56995	broad.mit.edu	36	6	158844430	158844430	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020245	exon13	c.G3747A	p.T1249T	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159573252	159573252	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon11	c.G1718A	p.G573D	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160410964	160410964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon31	c.G4327A	p.G1443R	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161450864	161450864	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon22	c.C4174T	p.L1392L	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161494398	161494398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020133	exon5	c.G634A	p.A212T	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165782413	165782413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006661	exon6	c.G359A	p.C120Y	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166746314	166746314	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021135	exon21	c.C2128T	p.R710W	.	.	.
RNASET2	8635	broad.mit.edu	36	6	167272439	167272439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003730	exon6	c.C380T	p.A127V	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170542108	170542108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032448	exon8	c.G2573A	p.R858Q	.	.	.
CAP2	10486	broad.mit.edu	36	6	17534881	17534881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006366	exon3	c.C203T	p.A68V	.	.	.
SLC17A3	10786	broad.mit.edu	36	6	25963369	25963369	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098486	exon6	c.T694G	p.F232V	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26021532	26021532	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005835	exon11	c.C1281T	p.P427P	.	.	.
HIST1H3D	8351	broad.mit.edu	36	6	26305259	26305259	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003530	exon2	c.C199T	p.P67S	.	.	.
OR2B6	26212	broad.mit.edu	36	6	28033431	28033431	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012367	exon1	c.C434T	p.A145V	.	.	.
NKAPL	222698	broad.mit.edu	36	6	28335178	28335178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007531	exon1	c.G50A	p.R17Q	.	.	.
NKAPL	222698	broad.mit.edu	36	6	28335421	28335421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007531	exon1	c.G293A	p.R98H	.	.	.
NKAPL	222698	broad.mit.edu	36	6	28336168	28336168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007531	exon1	c.G1040A	p.R347H	.	.	.
ABCF1	23	broad.mit.edu	36	6	30662240	30662240	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025091	exon19	c.C1896T	p.F632F	.	.	.
DDR1	780	broad.mit.edu	36	6	30965152	30965152	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013993	exon5	c.G383A	p.R128H	.	.	.
CDSN	1041	broad.mit.edu	36	6	31193233	31193233	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001264	exon2	c.G138A	p.T46T	.	.	.
TCF19	6941	broad.mit.edu	36	6	31238299	31238299	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077511	exon4	c.C864T	p.G288G	.	.	.
NCR3	259197	broad.mit.edu	36	6	31665729	31665729	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147130	exon2	c.T197C	p.V66A	.	.	.
BAT2	7916	broad.mit.edu	36	6	31706430	31706430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004638	exon15	c.C2338T	p.R780W	.	.	.
TUBB2B	347733	broad.mit.edu	36	6	3170759	3170759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178012	exon4	c.C563T	p.S188L	.	.	.
BAT2	7916	broad.mit.edu	36	6	31707674	31707674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004638	exon16	c.G3245A	p.R1082H	.	.	.
BAT2	7916	broad.mit.edu	36	6	31711004	31711004	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004638	exon22	c.A5277G	p.P1759P	.	.	.
BAT4	7918	broad.mit.edu	36	6	31738264	31738264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199237	exon4	c.C829T	p.R277W	.	.	.
C6orf27	80737	broad.mit.edu	36	6	31852324	31852324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025258	exon2	c.C212T	p.P71L	.	.	.
TNXB	7148	broad.mit.edu	36	6	32120929	32120929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032470	exon1	c.G46A	p.V16M	.	.	.
TNXB	7148	broad.mit.edu	36	6	32164584	32164584	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon6	c.G2735A	p.R912Q	.	.	.
TNXB	7148	broad.mit.edu	36	6	32164688	32164688	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon6	c.C2631T	p.A877A	.	.	.
TNXB	7148	broad.mit.edu	36	6	32172635	32172635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon3	c.C973T	p.R325C	.	.	.
AGPAT1	10554	broad.mit.edu	36	6	32245736	32245736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032741	exon6	c.C664T	p.R222C	.	.	.
HLA-DRA	3122	broad.mit.edu	36	6	32518996	32518996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019111	exon3	c.G385A	p.V129I	.	.	.
WDR46	9277	broad.mit.edu	36	6	33356665	33356665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164267	exon11	c.G1031A	p.R344Q	.	.	.
WDR46	9277	broad.mit.edu	36	6	33356735	33356735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164267	exon11	c.G961A	p.A321T	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33527642	33527642	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006772	exon19	c.G4013A	p.R1338Q	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33756391	33756391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002224	exon33	c.G4432A	p.A1478T	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33764078	33764078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002224	exon48	c.C6460T	p.R2154W	.	.	.
GRM4	2914	broad.mit.edu	36	6	34208903	34208903	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000841	exon1	c.G349A	p.E117K	.	.	.
ANKS1A	23294	broad.mit.edu	36	6	35155650	35155650	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015245	exon16	c.G2511A	p.P837P	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35318016	35318016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152753	exon13	c.G1475A	p.C492Y	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35319778	35319778	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152753	exon17	c.G2132A	p.R711H	.	.	.
PIM1	5292	broad.mit.edu	36	6	37248782	37248782	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002648	exon5	c.C640T	p.R214C	.	.	.
TBC1D22B	55633	broad.mit.edu	36	6	37392900	37392900	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017772	exon12	c.C1329T	p.Y443Y	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37731603	37731603	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153487	exon4	c.C430T	p.R144X	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37734110	37734110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153487	exon3	c.G271A	p.E91K	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38987227	38987227	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon64	c.G9095A	p.R3032H	.	.	.
KCNK5	8645	broad.mit.edu	36	6	39266851	39266851	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003740	exon5	c.C1293T	p.D431D	.	.	.
KCNK5	8645	broad.mit.edu	36	6	39267195	39267195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003740	exon5	c.G949A	p.G317R	.	.	.
DAAM2	23500	broad.mit.edu	36	6	39954242	39954242	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015345	exon13	c.C1445T	p.T482M	.	.	.
DAAM2	23500	broad.mit.edu	36	6	39967161	39967161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015345	exon18	c.C2212T	p.R738W	.	.	.
TFEB	7942	broad.mit.edu	36	6	41766460	41766460	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007162	exon4	c.C387T	p.H129H	.	.	.
UBR2	23304	broad.mit.edu	36	6	42690813	42690813	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184801	exon9	c.G1012T	p.V338F	.	.	.
KLC4	89953	broad.mit.edu	36	6	43147963	43147963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201521	exon12	c.C1480T	p.R494W	.	.	.
PTK7	5754	broad.mit.edu	36	6	43235521	43235521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152880	exon18	c.G2771A	p.R924H	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43431210	43431210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014345	exon4	c.C1840T	p.R614C	.	.	.
ABCC10	89845	broad.mit.edu	36	6	43507901	43507901	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198934	exon3	c.C205T	p.R69X	.	.	.
GTPBP2	54676	broad.mit.edu	36	6	43700260	43700260	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019096	exon7	c.C1065T	p.A355A	.	.	.
RSPH9	221421	broad.mit.edu	36	6	43721021	43721021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193341	exon1	c.C208T	p.P70S	.	.	.
TCTE1	202500	broad.mit.edu	36	6	44356016	44356016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182539	exon5	c.C1386T	p.S462S	.	.	.
AARS2	57505	broad.mit.edu	36	6	44378562	44378562	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020745	exon17	c.G2319T	p.K773N	.	.	.
RUNX2	860	broad.mit.edu	36	6	45622986	45622986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004348	exon7	c.G1490A	p.G497D	.	.	.
GPR116	221395	broad.mit.edu	36	6	46938720	46938720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098518	exon15	c.G2063A	p.R688Q	.	.	.
GPR115	221393	broad.mit.edu	36	6	47788171	47788171	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153838	exon5	c.C420A	p.P140P	.	.	.
CDYL	9425	broad.mit.edu	36	6	4882848	4882848	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143970	exon4	c.C603A	p.S201R	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51632333	51632333	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138694	exon61	c.C10550A	p.P3517H	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51632632	51632632	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138694	exon61	c.C10251T	p.S3417S	.	.	.
GSTA3	2940	broad.mit.edu	36	6	52875230	52875230	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000847	exon4	c.A145C	p.S49R	.	.	.
F13A1	2162	broad.mit.edu	36	6	6211930	6211930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000129	exon4	c.G431A	p.R144Q	.	.	.
LGSN	51557	broad.mit.edu	36	6	64048410	64048410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143940	exon5	c.G584A	p.S195N	.	.	.
FAM135A	57579	broad.mit.edu	36	6	71292654	71292654	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162529	exon13	c.C3146T	p.T1049M	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72863534	72863534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014989	exon3	c.G407A	p.R136H	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73004277	73004277	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168409	exon4	c.C67T	p.R23X	.	.	.
CAGE1	285782	broad.mit.edu	36	6	7319235	7319235	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205864	exon4	c.C408T	p.G136G	.	.	.
C6orf150	115004	broad.mit.edu	36	6	74195243	74195243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138441	exon4	c.G1127A	p.R376Q	.	.	.
MTO1	25821	broad.mit.edu	36	6	74232785	74232785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123226	exon2	c.G350A	p.R117H	.	.	.
MTO1	25821	broad.mit.edu	36	6	74247151	74247151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123226	exon7	c.C1162T	p.R388C	.	.	.
DSP	1832	broad.mit.edu	36	6	7501049	7501049	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008844	exon2	c.G270A	p.Q90Q	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76120048	76120048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015687	exon4	c.G556A	p.E186K	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76129285	76129285	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015687	exon3	c.C345T	p.Y115Y	.	.	.
IRAK1BP1	134728	broad.mit.edu	36	6	79664501	79664501	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010844	exon4	c.C514T	p.R172W	.	.	.
PHIP	55023	broad.mit.edu	36	6	79713211	79713211	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017934	exon37	c.A4306G	p.T1436A	.	.	.
FAM46A	55603	broad.mit.edu	36	6	82516173	82516173	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017633	exon3	c.G1287A	p.T429T	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83926283	83926283	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015018	exon37	c.A6847G	p.N2283D	.	.	.
NT5E	4907	broad.mit.edu	36	6	86258524	86258524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002526	exon8	c.G1471A	p.E491K	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88027706	88027706	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.T7640C	p.V2547A	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90629972	90629972	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon7	c.C1823T	p.S608F	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90635380	90635380	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon8	c.G5650A	p.A1884T	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161480579	161480579	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020133	exon8	c.907delC	p.R303fs	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35949999	35949999	+	Frame_Shift_Del	DEL	T	-	-	rs34144793	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003137	exon7	c.574delA	p.I192fs	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75922808	75922808	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon15	c.3135delC	p.P1045fs	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90629170	90629170	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001137667	exon7	c.1021delA	p.K341fs	.	.	.
BTN2A3	54718	broad.mit.edu	36	6	26539365	26539365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C6orf227	401253	broad.mit.edu	36	6	33663531	33663531	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IRF5	3663	broad.mit.edu	36	7	128373798	128373799	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098627	exon4	c.393_394insC	p.Q131fs	.	.	.
LRCH4	4034	broad.mit.edu	36	7	100012523	100012523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002319	exon13	c.C1406T	p.A469V	.	.	.
PCOLCE	5118	broad.mit.edu	36	7	100041265	100041265	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002593	exon5	c.C619T	p.L207L	.	.	.
MOSPD3	64598	broad.mit.edu	36	7	100048542	100048542	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040098	exon2	c.G192A	p.A64A	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100302044	100302044	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020246	exon14	c.C2626T	p.P876S	.	.	.
SRRT	51593	broad.mit.edu	36	7	100317708	100317708	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128852	exon5	c.C497T	p.T166M	.	.	.
SRRT	51593	broad.mit.edu	36	7	100322415	100322415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128852	exon14	c.G1708A	p.A570T	.	.	.
ACHE	43	broad.mit.edu	36	7	100329103	100329103	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000665	exon2	c.G687A	p.T229T	.	.	.
MUC17	140453	broad.mit.edu	36	7	100468441	100468441	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon3	c.C7024T	p.R2342C	.	.	.
CUX1	1523	broad.mit.edu	36	7	101600547	101600547	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181552	exon10	c.C825T	p.D275D	.	.	.
MLL5	55904	broad.mit.edu	36	7	104489857	104489857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182931	exon4	c.G82A	p.V28I	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106295387	106295387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.C145T	p.R49C	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107387480	107387480	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002291	exon19	c.G2350A	p.V784M	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107390613	107390613	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002291	exon15	c.C1830T	p.Y610Y	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107495753	107495753	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007356	exon19	c.G2390T	p.R797L	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107526226	107526226	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007356	exon11	c.C1218T	p.G406G	.	.	.
TES	26136	broad.mit.edu	36	7	115679176	115679176	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015641	exon5	c.G829A	p.D277N	.	.	.
CAPZA2	830	broad.mit.edu	36	7	116315444	116315444	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006136	exon2	c.C67T	p.H23Y	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121411379	121411379	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002851	exon8	c.C900T	p.Y300Y	.	.	.
AASS	10157	broad.mit.edu	36	7	121506224	121506224	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005763	exon22	c.G2413A	p.D805N	.	.	.
CADPS2	93664	broad.mit.edu	36	7	122048947	122048947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167940	exon5	c.C928T	p.R310W	.	.	.
TMEM106B	54664	broad.mit.edu	36	7	12238033	12238033	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134232	exon8	c.C732T	p.S244S	.	.	.
LMOD2	442721	broad.mit.edu	36	7	123083320	123083320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207163	exon1	c.G67A	p.A23T	.	.	.
WASL	8976	broad.mit.edu	36	7	123119660	123119660	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003941	exon9	c.C1324T	p.R442X	.	.	.
SCIN	85477	broad.mit.edu	36	7	12650319	12650319	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112706	exon12	c.A1613C	p.N538T	.	.	.
FSCN3	29999	broad.mit.edu	36	7	127025782	127025782	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020369	exon4	c.C1018T	p.R340X	.	.	.
PAX4	5078	broad.mit.edu	36	7	127038455	127038455	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006193	exon9	c.C931A	p.L311I	.	.	.
SND1	27044	broad.mit.edu	36	7	127512093	127512093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014390	exon19	c.G2192A	p.R731H	.	.	.
FLNC	2318	broad.mit.edu	36	7	128272050	128272050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001458	exon21	c.G3295A	p.V1099I	.	.	.
AHCYL2	23382	broad.mit.edu	36	7	128816170	128816170	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015328	exon3	c.G513A	p.S171S	.	.	.
AHCYL2	23382	broad.mit.edu	36	7	128840763	128840763	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015328	exon12	c.G1459A	p.V487M	.	.	.
FAM40B	57464	broad.mit.edu	36	7	128912734	128912734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020704	exon21	c.G2333A	p.R778H	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129449482	129449482	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016478	exon9	c.C1353T	p.S451S	.	.	.
CPA5	93979	broad.mit.edu	36	7	129795560	129795560	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127442	exon11	c.G1112T	p.G371V	.	.	.
MKLN1	4289	broad.mit.edu	36	7	130746640	130746640	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013255	exon7	c.T739C	p.Y247H	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131515148	131515148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon20	c.G3712A	p.A1238T	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131563665	131563665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon6	c.G1708A	p.V570I	.	.	.
EXOC4	60412	broad.mit.edu	36	7	132610411	132610411	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037126	exon2	c.G221A	p.R74H	.	.	.
AKR1B1	231	broad.mit.edu	36	7	133782609	133782609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001628	exon8	c.G806A	p.R269H	.	.	.
CNOT4	4850	broad.mit.edu	36	7	134698384	134698384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190850	exon12	c.C1935T	p.D645D	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138205014	138205014	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon14	c.G4585A	p.E1529K	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138252730	138252730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon2	c.G2182A	p.E728K	.	.	.
UBN2	254048	broad.mit.edu	36	7	138596736	138596736	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173569	exon6	c.C1104T	p.D368D	.	.	.
SLC37A3	84255	broad.mit.edu	36	7	139726558	139726558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032295	exon3	c.C191T	p.P64L	.	.	.
MKRN1	23608	broad.mit.edu	36	7	139825586	139825586	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145125	exon1	c.A28C	p.T10P	.	.	.
MGAM	8972	broad.mit.edu	36	7	141441953	141441953	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004668	exon41	c.C4890T	p.G1630G	.	.	.
EPHB6	2051	broad.mit.edu	36	7	142272054	142272054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004445	exon7	c.G374A	p.R125Q	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142280293	142280293	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018646	exon14	c.G1849A	p.G617R	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142336673	142336673	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019841	exon4	c.C459T	p.R153R	.	.	.
CASP2	835	broad.mit.edu	36	7	142707449	142707449	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032982	exon8	c.G907A	p.A303T	.	.	.
OR2A25	392138	broad.mit.edu	36	7	143403006	143403006	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004488	exon1	c.C761T	p.A254V	.	.	.
EZH2	2146	broad.mit.edu	36	7	148137387	148137387	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152998	exon17	c.T1926C	p.G642G	.	.	.
PDIA4	9601	broad.mit.edu	36	7	148331976	148331976	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004911	exon10	c.G1781A	p.R594H	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148432730	148432730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001661	exon4	c.G1166A	p.G389D	.	.	.
ZNF777	27153	broad.mit.edu	36	7	148784017	148784017	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015694	exon2	c.G30A	p.S10S	.	.	.
KRBA1	84626	broad.mit.edu	36	7	149050928	149050928	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032534	exon7	c.C720T	p.G240G	.	.	.
ZNF862	643641	broad.mit.edu	36	7	149178301	149178301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099220	exon5	c.G1058A	p.R353Q	.	.	.
GIMAP1	170575	broad.mit.edu	36	7	150048401	150048401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130759	exon3	c.G376A	p.A126T	.	.	.
SMARCD3	6604	broad.mit.edu	36	7	150568237	150568237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003078	exon11	c.C1028T	p.A343V	.	.	.
NUB1	51667	broad.mit.edu	36	7	150702208	150702208	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016118	exon12	c.C1341T	p.H447H	.	.	.
TMEM184A	202915	broad.mit.edu	36	7	1556345	1556345	+	De_novo_Start_InFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097620	exon5	c.C492T	p.Y164Y	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156739522	156739522	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014671	exon20	c.C2808T	p.C936C	.	.	.
ANKMY2	57037	broad.mit.edu	36	7	16608593	16608593	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020319	exon9	c.C1078A	p.L360M	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18591661	18591661	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178423	exon3	c.G255T	p.E85D	.	.	.
SP8	221833	broad.mit.edu	36	7	20791879	20791879	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198956	exon3	c.G28T	p.G10C	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21623896	21623896	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon23	c.G4245A	p.W1415X	.	.	.
SNX8	29886	broad.mit.edu	36	7	2270514	2270514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013321	exon6	c.G727A	p.A243T	.	.	.
CHST12	55501	broad.mit.edu	36	7	2438844	2438844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018641	exon2	c.C44T	p.S15L	.	.	.
OSBPL3	26031	broad.mit.edu	36	7	24840745	24840745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145321	exon14	c.C1523T	p.A508V	.	.	.
TAX1BP1	8887	broad.mit.edu	36	7	27823079	27823079	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006024	exon15	c.C1982A	p.P661H	.	.	.
GNA12	2768	broad.mit.edu	36	7	2801279	2801279	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007353	exon2	c.C334T	p.R112X	.	.	.
CREB5	9586	broad.mit.edu	36	7	28810445	28810445	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011666	exon4	c.G390A	p.T130T	.	.	.
CARD11	84433	broad.mit.edu	36	7	2925706	2925706	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032415	exon18	c.G2336A	p.R779Q	.	.	.
WIPF3	644150	broad.mit.edu	36	7	29890561	29890561	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080529	exon4	c.C926A	p.P309H	.	.	.
CRHR2	1395	broad.mit.edu	36	7	30671750	30671750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001883	exon4	c.G346A	p.A116T	.	.	.
PDE1C	5137	broad.mit.edu	36	7	31822093	31822093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001191056	exon15	c.G1783A	p.E595K	.	.	.
BBS9	27241	broad.mit.edu	36	7	33347080	33347080	+	Silent	SNP	C	T	T	rs61764066	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033605	exon11	c.C1245T	p.V415V	.	.	.
NPSR1	387129	broad.mit.edu	36	7	34884226	34884226	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207173	exon9	c.C1039T	p.R347C	.	.	.
HECW1	23072	broad.mit.edu	36	7	43567984	43567984	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015052	exon30	c.G4755A	p.S1585S	.	.	.
BLVRA	644	broad.mit.edu	36	7	43794138	43794138	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000712	exon3	c.C123T	p.G41G	.	.	.
MRPS24	64951	broad.mit.edu	36	7	43872921	43872921	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032014	exon4	c.G406A	p.V136M	.	.	.
UBE2D4	51619	broad.mit.edu	36	7	43956806	43956806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015983	exon6	c.G388A	p.D130N	.	.	.
NPC1L1	29881	broad.mit.edu	36	7	44546138	44546138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013389	exon2	c.C383T	p.T128M	.	.	.
CCM2	83605	broad.mit.edu	36	7	45070058	45070058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031443	exon3	c.C221T	p.T74M	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4768343	4768343	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037165	exon9	c.C1924A	p.L642I	.	.	.
SUN3	256979	broad.mit.edu	36	7	48000452	48000452	+	Missense_Mutation	SNP	C	A	A	rs73111110	by1000genomes	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152782	exon9	c.G846T	p.K282N	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48289909	48289909	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon16	c.G8409A	p.P2803P	.	.	.
RADIL	55698	broad.mit.edu	36	7	4883808	4883808	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018059	exon2	c.G489A	p.S163S	.	.	.
IKZF1	10320	broad.mit.edu	36	7	50422556	50422556	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006060	exon6	c.T609G	p.C203W	.	.	.
COBL	23242	broad.mit.edu	36	7	51120374	51120374	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015198	exon7	c.A1079G	p.N360S	.	.	.
COBL	23242	broad.mit.edu	36	7	51254978	51254978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015198	exon2	c.G199A	p.V67M	.	.	.
PMS2	5395	broad.mit.edu	36	7	5993661	5993661	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000535	exon11	c.C1261T	p.R421X	.	.	.
ZDHHC4	55146	broad.mit.edu	36	7	6591191	6591191	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018106	exon7	c.G516A	p.V172V	.	.	.
C7orf42	55069	broad.mit.edu	36	7	66051034	66051034	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017994	exon4	c.G514A	p.A172T	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70772897	70772897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022479	exon8	c.C1271T	p.P424L	.	.	.
STX1A	6804	broad.mit.edu	36	7	72757487	72757487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004603	exon4	c.C212T	p.T71M	.	.	.
ELN	2006	broad.mit.edu	36	7	73115624	73115624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081755	exon27	c.C1850T	p.A617V	.	.	.
LIMK1	3984	broad.mit.edu	36	7	73161184	73161184	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002314	exon10	c.G1166A	p.R389Q	.	.	.
CLIP2	7461	broad.mit.edu	36	7	73408688	73408688	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003388	exon5	c.C816T	p.C272C	.	.	.
GTF2IRD1	9569	broad.mit.edu	36	7	73576348	73576348	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005685	exon8	c.G1018A	p.A340T	.	.	.
GTF2IRD1	9569	broad.mit.edu	36	7	73647303	73647303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005685	exon25	c.C2618T	p.A873V	.	.	.
PION	54103	broad.mit.edu	36	7	76844592	76844592	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017439	exon9	c.G628A	p.V210I	.	.	.
PCLO	27445	broad.mit.edu	36	7	82346606	82346606	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon10	c.C13637T	p.T4546M	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84466741	84466741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152754	exon17	c.G2285A	p.R762Q	.	.	.
GRM3	2913	broad.mit.edu	36	7	86331567	86331567	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000840	exon6	c.A2600C	p.N867T	.	.	.
ABCB1	5243	broad.mit.edu	36	7	86982661	86982661	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000927	exon26	c.T3104C	p.V1035A	.	.	.
RUNDC3B	154661	broad.mit.edu	36	7	87238001	87238001	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134405	exon7	c.G798T	p.K266N	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88803587	88803587	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181646	exon4	c.G3355A	p.D1119N	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91520152	91520152	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon22	c.C5545T	p.R1849X	.	.	.
PEX1	5189	broad.mit.edu	36	7	91961581	91961581	+	Nonsense_Mutation	SNP	G	A	A	rs61750428	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000466	exon19	c.C2992T	p.R998X	.	.	.
CCDC132	55610	broad.mit.edu	36	7	92778492	92778492	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017667	exon20	c.T1827C	p.N609N	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93878185	93878185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000089	exon22	c.G1246A	p.V416I	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93893067	93893067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000089	exon44	c.G2905A	p.V969M	.	.	.
SMURF1	57154	broad.mit.edu	36	7	98496216	98496216	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020429	exon3	c.C145A	p.H49N	.	.	.
ARPC1B	10095	broad.mit.edu	36	7	98823695	98823695	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005720	exon4	c.G267A	p.T89T	.	.	.
PDAP1	11333	broad.mit.edu	36	7	98833541	98833541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014891	exon5	c.C367T	p.R123C	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99151465	99151465	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000765	exon7	c.C522T	p.H174H	.	.	.
ZKSCAN1	7586	broad.mit.edu	36	7	99469422	99469422	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003439	exon6	c.G1358A	p.R453H	.	.	.
MBLAC1	255374	broad.mit.edu	36	7	99563492	99563492	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203397	exon2	c.G538A	p.A180T	.	.	.
PILRB	29990	broad.mit.edu	36	7	99794441	99794441	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178238	exon2	c.C257T	p.P86L	.	.	.
PILRA	29992	broad.mit.edu	36	7	99809795	99809795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178272	exon2	c.C257T	p.P86L	.	.	.
PILRA	29992	broad.mit.edu	36	7	99809965	99809965	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178272	exon2	c.G427A	p.E143K	.	.	.
C7orf51	222950	broad.mit.edu	36	7	99924255	99924255	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173564	exon4	c.G975A	p.P325P	.	.	.
FLJ36031	168455	broad.mit.edu	36	7	106088244	106088244	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175884	exon1	c.335delC	p.P112fs	.	.	.
HOXA4	3201	broad.mit.edu	36	7	27135407	27135407	+	Frame_Shift_Del	DEL	G	-	-	rs66569027	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002141	exon2	c.925delC	p.H309fs	.	.	.
CPVL	54504	broad.mit.edu	36	7	29036787	29036787	+	Frame_Shift_Del	DEL	T	-	-	rs5883182	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031311	exon12	c.1251delA	p.K417fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100914035	100914035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon52	c.G9593A	p.R3198Q	.	.	.
SPAG1	6674	broad.mit.edu	36	8	101306659	101306659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003114	exon14	c.C1771T	p.P591S	.	.	.
SNX31	169166	broad.mit.edu	36	8	101689942	101689942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152628	exon8	c.G637A	p.V213M	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10502189	10502189	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178857	exon4	c.C6829T	p.P2277S	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10503831	10503831	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178857	exon4	c.G5187T	p.G1729G	.	.	.
LRP12	29967	broad.mit.edu	36	8	105578516	105578516	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013437	exon5	c.C1440T	p.S480S	.	.	.
OXR1	55074	broad.mit.edu	36	8	107774187	107774187	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181354	exon5	c.G560A	p.R187Q	.	.	.
EIF3E	3646	broad.mit.edu	36	8	109284458	109284458	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001568	exon12	c.G1229A	p.S410N	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110477524	110477524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon11	c.G904A	p.V302I	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110543226	110543226	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon48	c.A7296G	p.I2432M	.	.	.
DEFB135	613209	broad.mit.edu	36	8	11879452	11879452	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033017	exon2	c.A178G	p.T60A	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12033411	12033411	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201402	exon1	c.T268C	p.Y90H	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125201153	125201153	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039112	exon41	c.G5515A	p.V1839I	.	.	.
KIAA0196	9897	broad.mit.edu	36	8	126126026	126126026	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014846	exon21	c.C2601T	p.T867T	.	.	.
LONRF1	91694	broad.mit.edu	36	8	12627705	12627705	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152271	exon11	c.T2065A	p.S689T	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133210785	133210785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon15	c.C2525T	p.T842M	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133211048	133211048	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon15	c.C2262G	p.L754L	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133211315	133211315	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon15	c.G1995A	p.S665S	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133222593	133222593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon10	c.G1430A	p.R477H	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133918104	133918104	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016018	exon16	c.C2047T	p.R683X	.	.	.
KCNK9	51305	broad.mit.edu	36	8	140700243	140700243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016601	exon2	c.G565A	p.A189T	.	.	.
KCNK9	51305	broad.mit.edu	36	8	140784340	140784340	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016601	exon1	c.C78T	p.F26F	.	.	.
EIF2C2	27161	broad.mit.edu	36	8	141620509	141620509	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164623	exon15	c.C1970T	p.T657M	.	.	.
EIF2C2	27161	broad.mit.edu	36	8	141628518	141628518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164623	exon12	c.C1465T	p.P489S	.	.	.
FLJ43860	389690	broad.mit.edu	36	8	142527319	142527319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207414	exon21	c.G2689A	p.V897M	.	.	.
BAI1	575	broad.mit.edu	36	8	143558078	143558078	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001702	exon8	c.G1749T	p.E583D	.	.	.
ARC	23237	broad.mit.edu	36	8	143691939	143691939	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015193	exon1	c.C696T	p.G232G	.	.	.
LYPD2	137797	broad.mit.edu	36	8	143829563	143829563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205545	exon2	c.C86T	p.P29L	.	.	.
TOP1MT	116447	broad.mit.edu	36	8	144471380	144471380	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052963	exon10	c.G1218A	p.T406T	.	.	.
MAPK15	225689	broad.mit.edu	36	8	144875800	144875800	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139021	exon12	c.C1298T	p.A433V	.	.	.
SCRIB	23513	broad.mit.edu	36	8	144966536	144966536	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015356	exon9	c.T794G	p.L265R	.	.	.
PLEC	5339	broad.mit.edu	36	8	145067161	145067161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201383	exon32	c.G8828A	p.R2943Q	.	.	.
PARP10	84875	broad.mit.edu	36	8	145129494	145129494	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032789	exon8	c.C2251T	p.R751C	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1484815	1484815	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon2	c.G549A	p.A183A	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1485144	1485144	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon2	c.C878T	p.T293M	.	.	.
PCM1	5108	broad.mit.edu	36	8	17857302	17857302	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006197	exon10	c.C1332A	p.P444P	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1892666	1892666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014629	exon29	c.G3865A	p.V1289I	.	.	.
LPL	4023	broad.mit.edu	36	8	19864006	19864006	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000237	exon9	c.G1423T	p.G475C	.	.	.
LZTS1	11178	broad.mit.edu	36	8	20154944	20154944	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021020	exon2	c.G778A	p.E260K	.	.	.
LGI3	203190	broad.mit.edu	36	8	22061829	22061829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139278	exon8	c.G1436A	p.R479H	.	.	.
RHOBTB2	23221	broad.mit.edu	36	8	22919585	22919585	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160036	exon6	c.C530T	p.A177V	.	.	.
SLC25A37	51312	broad.mit.edu	36	8	23485065	23485065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016612	exon4	c.G769A	p.V257I	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25215788	25215788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024940	exon10	c.C877T	p.R293C	.	.	.
PPP2R2A	5520	broad.mit.edu	36	8	26283668	26283668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177591	exon10	c.G1196A	p.R399H	.	.	.
SCARA5	286133	broad.mit.edu	36	8	27835129	27835129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173833	exon4	c.C794T	p.A265V	.	.	.
ZNF395	55893	broad.mit.edu	36	8	28270206	28270206	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018660	exon4	c.C483T	p.D161D	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29045796	29045796	+	Missense_Mutation	SNP	C	T	T	rs12549991	byHapMap	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015254	exon23	c.G2890A	p.A964T	.	.	.
DUSP4	1846	broad.mit.edu	36	8	29250824	29250824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001394	exon4	c.C823T	p.R275C	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2936480	2936480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon48	c.C7251T	p.C2417C	.	.	.
LEPROTL1	23484	broad.mit.edu	36	8	30081500	30081500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128208	exon3	c.G235A	p.V79M	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3232518	3232518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon18	c.C2688T	p.D896D	.	.	.
C8orf41	80185	broad.mit.edu	36	8	33480836	33480836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025115	exon4	c.G1087A	p.A363T	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35660768	35660768	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon5	c.G732A	p.S244S	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38434062	38434062	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174065	exon2	c.C60T	p.T20T	.	.	.
TACC1	6867	broad.mit.edu	36	8	38796673	38796673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006283	exon3	c.G754A	p.A252T	.	.	.
ADAM9	8754	broad.mit.edu	36	8	39053993	39053993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003816	exon16	c.G1787A	p.R596Q	.	.	.
ANK1	286	broad.mit.edu	36	8	41670593	41670593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020475	exon29	c.G3512A	p.R1171H	.	.	.
SLC20A2	6575	broad.mit.edu	36	8	42413933	42413933	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006749	exon8	c.C1254T	p.G418G	.	.	.
SGK196	84197	broad.mit.edu	36	8	43077978	43077978	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032237	exon4	c.G130A	p.A44T	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43156463	43156463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152419	exon11	c.G1031A	p.R344H	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48899076	48899076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon64	c.C8817T	p.S2939S	.	.	.
UBE2V2	7336	broad.mit.edu	36	8	49118210	49118210	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003350	exon2	c.C81T	p.G27G	.	.	.
RB1CC1	9821	broad.mit.edu	36	8	53732615	53732615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083617	exon15	c.G2327A	p.R776Q	.	.	.
RGS20	8601	broad.mit.edu	36	8	55029216	55029216	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170587	exon5	c.C771T	p.N257N	.	.	.
CLVS1	157807	broad.mit.edu	36	8	62375241	62375241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173519	exon2	c.C301T	p.R101C	.	.	.
ASPH	444	broad.mit.edu	36	8	62759263	62759263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164753	exon2	c.G55A	p.G19R	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6290432	6290432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024596	exon8	c.C1781T	p.T594M	.	.	.
ANGPT2	285	broad.mit.edu	36	8	6372560	6372560	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001118888	exon2	c.T334C	p.S112P	.	.	.
ARMC1	55156	broad.mit.edu	36	8	66680230	66680230	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018120	exon5	c.G563A	p.R188H	.	.	.
XKR5	389610	broad.mit.edu	36	8	6668565	6668565	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207411	exon4	c.A525G	p.P175P	.	.	.
TRIM55	84675	broad.mit.edu	36	8	67228980	67228980	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_184085	exon9	c.C1381A	p.P461T	.	.	.
ADHFE1	137872	broad.mit.edu	36	8	67523740	67523740	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144650	exon8	c.A715C	p.S239R	.	.	.
ADHFE1	137872	broad.mit.edu	36	8	67535245	67535245	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144650	exon13	c.G1311A	p.T437T	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68277916	68277916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006421	exon36	c.C5084T	p.A1695V	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71201733	71201733	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006540	exon19	c.C3785A	p.T1262N	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71231044	71231044	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006540	exon11	c.G2110A	p.A704T	.	.	.
TPD52	7163	broad.mit.edu	36	8	81112968	81112968	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025252	exon6	c.G613A	p.A205T	.	.	.
SGK223	157285	broad.mit.edu	36	8	8271187	8271187	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080826	exon2	c.G2142A	p.P714P	.	.	.
MFHAS1	9258	broad.mit.edu	36	8	8785239	8785239	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004225	exon1	c.T2740C	p.F914L	.	.	.
MFHAS1	9258	broad.mit.edu	36	8	8786390	8786390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004225	exon1	c.C1589T	p.A530V	.	.	.
PDP1	54704	broad.mit.edu	36	8	95004801	95004801	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161779	exon3	c.A1413G	p.I471M	.	.	.
CDH17	1015	broad.mit.edu	36	8	95230188	95230188	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144663	exon14	c.C1887T	p.A629A	.	.	.
RAD54B	25788	broad.mit.edu	36	8	95473244	95473244	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012415	exon10	c.T1578C	p.F526F	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95592884	95592884	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015496	exon13	c.G3095A	p.R1032H	.	.	.
KCNS2	3788	broad.mit.edu	36	8	99509760	99509760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020697	exon2	c.G377A	p.R126H	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77926404	77926404	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon10	c.4692delT	p.S1564fs	.	.	.
C9orf125	84302	broad.mit.edu	36	9	103278560	103278560	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032342	exon2	c.C636T	p.D212D	.	.	.
FKTN	2218	broad.mit.edu	36	9	107437165	107437165	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079802	exon11	c.G1185A	p.P395P	.	.	.
PALM2-AKAP2	445815	broad.mit.edu	36	9	111938446	111938446	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147150	exon8	c.C801T	p.G267G	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112181594	112181594	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon44	c.A10262G	p.H3421R	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113344483	113344483	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133464	exon6	c.A1447G	p.T483A	.	.	.
C9orf43	257169	broad.mit.edu	36	9	115215696	115215696	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152786	exon2	c.C102T	p.G34G	.	.	.
RGS3	5998	broad.mit.edu	36	9	115286270	115286270	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144488	exon7	c.G557A	p.R186H	.	.	.
RGS3	5998	broad.mit.edu	36	9	115299484	115299484	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144488	exon10	c.C820T	p.R274W	.	.	.
RGS3	5998	broad.mit.edu	36	9	115397702	115397702	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144488	exon25	c.G3247A	p.G1083R	.	.	.
ZNF618	114991	broad.mit.edu	36	9	115851625	115851625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133374	exon14	c.C1943T	p.P648L	.	.	.
ORM1	5004	broad.mit.edu	36	9	116127213	116127213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000607	exon5	c.G500A	p.R167H	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116268466	116268466	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015404	exon3	c.T865C	p.S289P	.	.	.
C9orf91	203197	broad.mit.edu	36	9	116419335	116419335	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153045	exon2	c.C39T	p.G13G	.	.	.
TNFSF15	9966	broad.mit.edu	36	9	116592890	116592890	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005118	exon4	c.T419G	p.L140R	.	.	.
TNC	3371	broad.mit.edu	36	9	116875885	116875885	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon10	c.A3032G	p.K1011R	.	.	.
TNC	3371	broad.mit.edu	36	9	116889002	116889002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon3	c.G829A	p.D277N	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122239425	122239425	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018249	exon25	c.G3924A	p.L1308L	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122260635	122260635	+	Silent	SNP	G	A	A	rs36001459	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018249	exon20	c.C2289T	p.H763H	.	.	.
PSMD5	5711	broad.mit.edu	36	9	122633546	122633546	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005047	exon4	c.C445A	p.L149M	.	.	.
DAB2IP	153090	broad.mit.edu	36	9	123570602	123570602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032552	exon10	c.C1684T	p.R562C	.	.	.
DAB2IP	153090	broad.mit.edu	36	9	123584468	123584468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032552	exon16	c.G3356A	p.R1119H	.	.	.
PDCL	5082	broad.mit.edu	36	9	124628806	124628806	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005388	exon2	c.G82A	p.E28K	.	.	.
RC3H2	54542	broad.mit.edu	36	9	124660930	124660930	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018835	exon12	c.C2122T	p.R708X	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125185839	125185839	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020946	exon21	c.G1752A	p.L584L	.	.	.
LHX2	9355	broad.mit.edu	36	9	125817238	125817238	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004789	exon3	c.C340T	p.R114C	.	.	.
NEK6	10783	broad.mit.edu	36	9	126129505	126129505	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166167	exon7	c.C636T	p.G212G	.	.	.
FAM129B	64855	broad.mit.edu	36	9	129310229	129310229	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022833	exon12	c.G1506A	p.P502P	.	.	.
ENG	2022	broad.mit.edu	36	9	129620235	129620235	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114753	exon12	c.C1671T	p.T557T	.	.	.
ST6GALNAC6	30815	broad.mit.edu	36	9	129692789	129692789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013443	exon5	c.G652A	p.G218S	.	.	.
FAM102A	399665	broad.mit.edu	36	9	129756000	129756000	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035254	exon2	c.C172T	p.R58W	.	.	.
PTGES2	80142	broad.mit.edu	36	9	129923329	129923329	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025072	exon7	c.C1050T	p.F350F	.	.	.
DNM1	1759	broad.mit.edu	36	9	130022343	130022343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon6	c.G751A	p.A251T	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130059483	130059483	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004486	exon25	c.C2780T	p.A927V	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130062681	130062681	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004486	exon17	c.C1561T	p.R521C	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130064750	130064750	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004486	exon13	c.G966T	p.R322R	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130413861	130413861	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon36	c.C4746T	p.N1582N	.	.	.
ZER1	10444	broad.mit.edu	36	9	130553234	130553234	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006336	exon7	c.G1173A	p.L391L	.	.	.
TBC1D13	54662	broad.mit.edu	36	9	130608108	130608108	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018201	exon10	c.C1068T	p.C356C	.	.	.
CCBL1	883	broad.mit.edu	36	9	130635707	130635707	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122672	exon12	c.C1096T	p.R366W	.	.	.
LRRC8A	56262	broad.mit.edu	36	9	130709417	130709417	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019594	exon3	c.G153T	p.K51N	.	.	.
PHYHD1	254295	broad.mit.edu	36	9	130729181	130729181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174933	exon4	c.C77T	p.A26V	.	.	.
DOLK	22845	broad.mit.edu	36	9	130748844	130748844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014908	exon1	c.G560A	p.R187H	.	.	.
FAM73B	84895	broad.mit.edu	36	9	130869924	130869924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032809	exon12	c.C1222T	p.R408W	.	.	.
ASB6	140459	broad.mit.edu	36	9	131440092	131440092	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017873	exon6	c.C1064T	p.A355V	.	.	.
ASB6	140459	broad.mit.edu	36	9	131440690	131440690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177999	exon4	c.G472A	p.V158I	.	.	.
ASS1	445	broad.mit.edu	36	9	132354548	132354548	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000050	exon13	c.C846T	p.Y282Y	.	.	.
EXOSC2	23404	broad.mit.edu	36	9	132559057	132559057	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014285	exon1	c.C58A	p.R20S	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132914329	132914329	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006059	exon9	c.A1621C	p.T541P	.	.	.
NUP214	8021	broad.mit.edu	36	9	133062900	133062900	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005085	exon29	c.C4198G	p.P1400A	.	.	.
NUP214	8021	broad.mit.edu	36	9	133088044	133088044	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005085	exon32	c.G5808A	p.S1936S	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133467313	133467313	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198679	exon12	c.G1953A	p.A651A	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133508520	133508520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198679	exon4	c.C424T	p.L142F	.	.	.
NTNG2	84628	broad.mit.edu	36	9	134032057	134032057	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032536	exon2	c.G18A	p.A6A	.	.	.
GFI1B	8328	broad.mit.edu	36	9	134856209	134856209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135031	exon6	c.G806A	p.R269H	.	.	.
ABO	28	broad.mit.edu	36	9	135121050	135121050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020469	exon7	c.G888A	p.S296S	.	.	.
ABO	28	broad.mit.edu	36	9	135122626	135122626	+	Missense_Mutation	SNP	G	T	T	rs55716052	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020469	exon6	c.C364A	p.P122T	.	.	.
SURF6	6838	broad.mit.edu	36	9	135188900	135188900	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006753	exon5	c.C712T	p.Q238X	.	.	.
ADAMTS13	11093	broad.mit.edu	36	9	135280932	135280932	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139025	exon5	c.G468A	p.G156G	.	.	.
SLC2A6	11182	broad.mit.edu	36	9	135327023	135327023	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145099	exon9	c.C1279T	p.R427W	.	.	.
SARDH	1757	broad.mit.edu	36	9	135572362	135572362	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007101	exon8	c.G1057T	p.D353Y	.	.	.
WDR5	11091	broad.mit.edu	36	9	136003276	136003276	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017588	exon8	c.G574A	p.D192N	.	.	.
GLT6D1	360203	broad.mit.edu	36	9	137655960	137655960	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182974	exon5	c.C635T	p.P212L	.	.	.
AGPAT2	10555	broad.mit.edu	36	9	138690885	138690885	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006412	exon4	c.C561T	p.G187G	.	.	.
FAM69B	138311	broad.mit.edu	36	9	138736495	138736495	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152421	exon4	c.G404A	p.R135Q	.	.	.
C9orf172	389813	broad.mit.edu	36	9	138858726	138858726	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080482	exon1	c.C39T	p.T13T	.	.	.
PNPLA7	375775	broad.mit.edu	36	9	139557017	139557017	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152286	exon6	c.T489C	p.F163F	.	.	.
CACNA1B	774	broad.mit.edu	36	9	139892423	139892423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000718	exon1	c.C217T	p.R73C	.	.	.
CACNA1B	774	broad.mit.edu	36	9	139985843	139985843	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000718	exon11	c.G1521A	p.P507P	.	.	.
TTC39B	158219	broad.mit.edu	36	9	15179768	15179768	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168340	exon12	c.G1128A	p.A376A	.	.	.
SNAPC3	6619	broad.mit.edu	36	9	15423622	15423622	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039697	exon3	c.C465T	p.F155F	.	.	.
BNC2	54796	broad.mit.edu	36	9	16717881	16717881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017637	exon3	c.G244A	p.G82R	.	.	.
HAUS6	54801	broad.mit.edu	36	9	19086745	19086745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017645	exon2	c.C151T	p.R51C	.	.	.
MLLT3	4300	broad.mit.edu	36	9	20404379	20404379	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004529	exon5	c.C465T	p.S155S	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2046700	2046700	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139045	exon7	c.G1202A	p.R401H	.	.	.
KIAA1797	54914	broad.mit.edu	36	9	20971436	20971436	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017794	exon40	c.G4389C	p.K1463N	.	.	.
KIAA0020	9933	broad.mit.edu	36	9	2814723	2814723	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014878	exon11	c.G1128A	p.T376T	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32532177	32532177	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195622	exon2	c.C2151T	p.T717T	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32621937	32621937	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.T3641C	p.V1214A	.	.	.
DNAI1	27019	broad.mit.edu	36	9	34504692	34504692	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012144	exon18	c.G1773A	p.A591A	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35537198	35537198	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014806	exon2	c.A680G	p.Q227R	.	.	.
ZBTB5	9925	broad.mit.edu	36	9	37432005	37432005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014872	exon2	c.C544T	p.R182C	.	.	.
POLR1E	64425	broad.mit.edu	36	9	37491827	37491827	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022490	exon11	c.G1086A	p.K362K	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37515117	37515117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012166	exon6	c.G1759A	p.G587S	.	.	.
ERMP1	79956	broad.mit.edu	36	9	5800164	5800164	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024896	exon8	c.T1395C	p.L465L	.	.	.
GLDC	2731	broad.mit.edu	36	9	6594710	6594710	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000170	exon7	c.C936T	p.I312I	.	.	.
KANK1	23189	broad.mit.edu	36	9	701557	701557	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153186	exon2	c.G317A	p.R106H	.	.	.
PGM5	5239	broad.mit.edu	36	9	70288756	70288756	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021965	exon9	c.C1451T	p.P484L	.	.	.
PIP5K1B	8395	broad.mit.edu	36	9	70699173	70699173	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003558	exon8	c.C570T	p.N190N	.	.	.
PRKACG	5568	broad.mit.edu	36	9	70817934	70817934	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002732	exon1	c.G895A	p.A299T	.	.	.
TJP2	9414	broad.mit.edu	36	9	70979146	70979146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201629	exon1	c.G38A	p.R13Q	.	.	.
APBA1	320	broad.mit.edu	36	9	71321925	71321925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163	exon2	c.G22A	p.A8T	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78442954	78442954	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015225	exon13	c.G8799A	p.A2933A	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78511933	78511933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon8	c.G5077A	p.G1693S	.	.	.
TLE4	7091	broad.mit.edu	36	9	81457439	81457439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007005	exon7	c.G502A	p.G168R	.	.	.
UBQLN1	29979	broad.mit.edu	36	9	85482535	85482535	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053067	exon6	c.C1032T	p.G344G	.	.	.
HNRNPK	3190	broad.mit.edu	36	9	85776451	85776451	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002140	exon12	c.G964A	p.A322T	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89486336	89486336	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon20	c.T2199A	p.P733P	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89511169	89511169	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon26	c.C3363T	p.D1121D	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89692428	89692428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.C3206T	p.A1069V	.	.	.
SPIN1	10927	broad.mit.edu	36	9	90273251	90273251	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006717	exon5	c.A500G	p.Y167C	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91192332	91192332	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142287	exon14	c.C1119T	p.S373S	.	.	.
AUH	549	broad.mit.edu	36	9	93022995	93022995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001698	exon7	c.C756T	p.G252G	.	.	.
ROR2	4920	broad.mit.edu	36	9	93526215	93526215	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004560	exon9	c.G2382A	p.P794P	.	.	.
IPPK	64768	broad.mit.edu	36	9	94451597	94451597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022755	exon5	c.C373T	p.R125C	.	.	.
BICD2	23299	broad.mit.edu	36	9	94520808	94520808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015250	exon5	c.G1940A	p.R647H	.	.	.
BICD2	23299	broad.mit.edu	36	9	94522415	94522415	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	T	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015250	exon4	c.G1050A	p.Q350Q	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94649136	94649136	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007101	exon4	c.G1646T	p.C549F	.	.	.
SUSD3	203328	broad.mit.edu	36	9	94877910	94877910	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145006	exon2	c.C112A	p.P38T	.	.	.
WNK2	65268	broad.mit.edu	36	9	95066129	95066129	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006648	exon15	c.C3689T	p.T1230M	.	.	.
ZNF169	169841	broad.mit.edu	36	9	96102644	96102644	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194320	exon5	c.G983A	p.R328H	.	.	.
ZNF169	169841	broad.mit.edu	36	9	96102970	96102970	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194320	exon5	c.C1309T	p.R437W	.	.	.
FANCC	2176	broad.mit.edu	36	9	96913733	96913733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000136	exon13	c.G1162A	p.G388R	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97258444	97258444	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon19	c.G2788A	p.V930M	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98620866	98620866	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001662	exon6	c.A1260C	p.K420N	.	.	.
CTSL2	1515	broad.mit.edu	36	9	98837716	98837716	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001333	exon6	c.G702A	p.K234K	.	.	.
SMC2	10592	broad.mit.edu	36	9	105925322	105925322	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006444	exon17	c.2245delA	p.K749fs	.	.	.
C9orf135	138255	broad.mit.edu	36	9	71662715	71662715	+	Splice_Site	SNP	T	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
USP9X	8239	broad.mit.edu	36	X	40973978	40973979	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon43	c.7433_7434insA	p.V2478fs	.	.	.
DRP2	1821	broad.mit.edu	36	X	100400074	100400074	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001939	exon22	c.C2511T	p.A837A	.	.	.
WWC3	55841	broad.mit.edu	36	X	10045433	10045433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015691	exon11	c.C1334T	p.T445M	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10113087	10113087	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001830	exon3	c.A15G	p.G5G	.	.	.
MCART6	401612	broad.mit.edu	36	X	103236160	103236160	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012755	exon2	c.G437A	p.R146H	.	.	.
MORC4	79710	broad.mit.edu	36	X	106072511	106072511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085354	exon15	c.G2266A	p.E756K	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107815988	107815988	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon46	c.G4270T	p.G1424X	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108595230	108595230	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001522	exon3	c.G829A	p.V277I	.	.	.
CXorf61	203413	broad.mit.edu	36	X	115507015	115507015	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017978	exon2	c.A263G	p.E88G	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117596562	117596562	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon13	c.C1436T	p.A479V	.	.	.
RHOXF2B	727940	broad.mit.edu	36	X	119177164	119177164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032498	exon2	c.G295A	p.G99S	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123367975	123367975	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon25	c.A5007G	p.G1669G	.	.	.
BCORL1	63035	broad.mit.edu	36	X	128990403	128990403	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021946	exon7	c.C4191T	p.N1397N	.	.	.
USP26	83844	broad.mit.edu	36	X	131987333	131987333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031907	exon1	c.G2582A	p.R861Q	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144712575	144712575	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144006	exon3	c.C940T	p.R314X	.	.	.
MOSPD2	158747	broad.mit.edu	36	X	14828639	14828639	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152581	exon6	c.A499T	p.I167F	.	.	.
CD99L2	83692	broad.mit.edu	36	X	149688189	149688189	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134446	exon9	c.G618A	p.P206P	.	.	.
TMEM187	8269	broad.mit.edu	36	X	152901356	152901356	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003492	exon2	c.T649C	p.W217R	.	.	.
ATP6AP1	537	broad.mit.edu	36	X	153313935	153313935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001183	exon4	c.C493T	p.R165W	.	.	.
RBBP7	5931	broad.mit.edu	36	X	16786819	16786819	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198719	exon4	c.C514T	p.R172C	.	.	.
NHS	4810	broad.mit.edu	36	X	17649501	17649501	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon5	c.A404G	p.E135G	.	.	.
NHS	4810	broad.mit.edu	36	X	17656027	17656027	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon7	c.C3349T	p.P1117S	.	.	.
NHS	4810	broad.mit.edu	36	X	17660069	17660069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon9	c.C3989T	p.A1330V	.	.	.
RS1	6247	broad.mit.edu	36	X	18570148	18570148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000330	exon6	c.G572A	p.R191Q	.	.	.
RS1	6247	broad.mit.edu	36	X	18584758	18584758	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000330	exon3	c.C120T	p.C40C	.	.	.
RS1	6247	broad.mit.edu	36	X	18585690	18585690	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000330	exon2	c.G69A	p.S23S	.	.	.
ACOT9	23597	broad.mit.edu	36	X	23661252	23661252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037171	exon4	c.G149A	p.R50Q	.	.	.
ARSH	347527	broad.mit.edu	36	X	2955494	2955494	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011719	exon7	c.G1177A	p.G393R	.	.	.
ARSF	416	broad.mit.edu	36	X	3012419	3012419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004042	exon6	c.C542T	p.T181M	.	.	.
USP9X	8239	broad.mit.edu	36	X	40910163	40910163	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon16	c.C2080T	p.R694C	.	.	.
CASK	8573	broad.mit.edu	36	X	41322573	41322573	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126054	exon15	c.G1467A	p.R489R	.	.	.
ARAF	369	broad.mit.edu	36	X	47309204	47309204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001654	exon4	c.G265A	p.E89K	.	.	.
ZNF630	57232	broad.mit.edu	36	X	47804202	47804202	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190255	exon5	c.A531G	p.L177L	.	.	.
HDAC6	10013	broad.mit.edu	36	X	48558035	48558035	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006044	exon12	c.C943T	p.R315W	.	.	.
PRAF2	11230	broad.mit.edu	36	X	48816581	48816581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007213	exon3	c.G428A	p.R143H	.	.	.
PAGE1	8712	broad.mit.edu	36	X	49342561	49342561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003785	exon4	c.C287T	p.A96V	.	.	.
DGKK	139189	broad.mit.edu	36	X	50137838	50137838	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013742	exon22	c.G3109A	p.G1037R	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53581315	53581315	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon78	c.C12064T	p.R4022C	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53588292	53588292	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon72	c.C11205T	p.D3735D	.	.	.
FAM120C	54954	broad.mit.edu	36	X	54176971	54176971	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017848	exon8	c.G1850T	p.R617M	.	.	.
TRO	7216	broad.mit.edu	36	X	54966090	54966090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016157	exon3	c.G400A	p.A134T	.	.	.
ALAS2	212	broad.mit.edu	36	X	55064361	55064361	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037967	exon4	c.C376T	p.R126C	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63329597	63329597	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152424	exon2	c.C295A	p.L99M	.	.	.
VSIG4	11326	broad.mit.edu	36	X	65161610	65161610	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184831	exon5	c.C640T	p.R214W	.	.	.
EFNB1	1947	broad.mit.edu	36	X	67975268	67975268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004429	exon2	c.G212A	p.R71Q	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395406	69395406	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002565	exon1	c.G794A	p.R265H	.	.	.
TEX11	56159	broad.mit.edu	36	X	69989711	69989711	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003811	exon8	c.C468T	p.Y156Y	.	.	.
MED12	9968	broad.mit.edu	36	X	70277277	70277277	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005120	exon42	c.G6112A	p.V2038I	.	.	.
NLGN3	54413	broad.mit.edu	36	X	70306009	70306009	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166660	exon6	c.G1764A	p.V588V	.	.	.
TAF1	6872	broad.mit.edu	36	X	70600524	70600524	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138923	exon38	c.C5522T	p.P1841L	.	.	.
NHSL2	340527	broad.mit.edu	36	X	71275431	71275431	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013627	exon6	c.G1308T	p.K436N	.	.	.
NHSL2	340527	broad.mit.edu	36	X	71276229	71276229	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013627	exon6	c.G2106A	p.P702P	.	.	.
ZCCHC5	203430	broad.mit.edu	36	X	77799312	77799312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152694	exon2	c.C1262T	p.P421L	.	.	.
TBX22	50945	broad.mit.edu	36	X	79168892	79168892	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109878	exon6	c.C667T	p.R223X	.	.	.
HDX	139324	broad.mit.edu	36	X	83617051	83617051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177479	exon3	c.G11A	p.R4H	.	.	.
TBL1X	6907	broad.mit.edu	36	X	9639710	9639710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139468	exon16	c.C1346T	p.T449M	.	.	.
TNMD	64102	broad.mit.edu	36	X	99740795	99740795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022144	exon6	c.C704T	p.A235V	.	.	.
MIR223	407008	broad.mit.edu	36	X	65155453	65155453	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
APOOL	139322	broad.mit.edu	36	X	84208788	84208788	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
