Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
NONO	0	genome.wustl.edu	36	X	70428422	70428422	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3011-03A-01D-0739-09	TCGA-AB-3011-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	fc2d6c31-dadb-45cb-9053-c87f535a77a5	53089a3e-4b9f-4c04-ac13-b972213961f1	X	70428422	70428422	C	A	SNP	NONO	NM_007363.1	human	genbank	54_36p	+1	reviewed	missense	c.223	p.R75S	1.000	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_NOPS,superfamily_RNA-binding domain RBD	-	no_errors	215	4	1.83	132	40	23.26	71	87	55.06
OR1C1	0	genome.wustl.edu	36	1	245987765	245987765	+	Silent	SNP	G	G	A			TCGA-AB-3011-03A-01D-0739-09	TCGA-AB-3011-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	fc2d6c31-dadb-45cb-9053-c87f535a77a5	53089a3e-4b9f-4c04-ac13-b972213961f1	1	245987765	245987765	G	A	SNP	OR1C1	NM_012353.2	human	genbank	54_36p	-1	validated	silent	c.567	p.C189	0.993	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	926	26	2.73	423	310	42.23	NA	NA	NA
IDH1	0	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	T	rs121913499		TCGA-AB-3011-03A-01D-0739-09	TCGA-AB-3011-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	fc2d6c31-dadb-45cb-9053-c87f535a77a5	53089a3e-4b9f-4c04-ac13-b972213961f1	2	208821358	208821358	G	T	SNP	IDH1	NM_005896.2	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132S	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors	308	7	2.22	204	119	36.84	29	43	59.72
GTF3A	0	genome.wustl.edu	36	13	26906981	26906981	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3011-03A-01D-0739-09	TCGA-AB-3011-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	fc2d6c31-dadb-45cb-9053-c87f535a77a5	53089a3e-4b9f-4c04-ac13-b972213961f1	13	26906981	26906981	G	A	SNP	GTF3A	ENST00000381140	human	ensembl	54_36p	+1	known	missense	c.854	p.R285H	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	876	34	3.74	361	245	40.43	127	199	61.04
WNK4	0	genome.wustl.edu	36	17	38193916	38193916	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3011-03A-01D-0739-09	TCGA-AB-3011-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	fc2d6c31-dadb-45cb-9053-c87f535a77a5	53089a3e-4b9f-4c04-ac13-b972213961f1	17	38193916	38193916	C	T	SNP	WNK4	NM_032387.3	human	genbank	54_36p	+1	validated	missense	c.2005	p.R669W	0.975	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors	201	14	6.48	144	110	43.14	NA	NA	NA
TRPM4	0	genome.wustl.edu	36	19	54397072	54397072	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3011-03A-01D-0739-09	TCGA-AB-3011-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	fc2d6c31-dadb-45cb-9053-c87f535a77a5	53089a3e-4b9f-4c04-ac13-b972213961f1	19	54397072	54397072	G	A	SNP	TRPM4	NM_017636.2	human	genbank	54_36p	+1	provisional	missense	c.2993	p.G998D	0.061	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors	65	4	5.80	90	69	43.12	NA	NA	NA
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-3011-03A-01D-0739-09	TCGA-AB-3011-11A-01D-0739-09	-	-	-	TCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	fc2d6c31-dadb-45cb-9053-c87f535a77a5	53089a3e-4b9f-4c04-ac13-b972213961f1	5	170770152	170770153	-	TCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
