Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
SUSD5	0	genome.wustl.edu	36	3	33169319	33169319	+	Silent	SNP	G	G	A			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8370b0ee-a7e7-4fbb-a04e-b31c1d1c7b3c	fd834a25-f907-4646-8a91-2a1d97db9aaf	3	33169319	33169319	G	A	SNP	SUSD5	NM_015551.1	human	genbank	54_36p	-1	validated	silent	c.1809	p.H603	1.000	NULL	HMMSmart_CCP,HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,superfamily_Complement_control_module,superfamily_C-type_lectin_fold	-	no_errors	466	36	7.17	800	472	37.08	NA	NA	NA
FGL2	0	genome.wustl.edu	36	7	76663891	76663891	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8370b0ee-a7e7-4fbb-a04e-b31c1d1c7b3c	fd834a25-f907-4646-8a91-2a1d97db9aaf	7	76663891	76663891	C	A	SNP	FGL2	NM_006682.2	human	genbank	54_36p	-1	reviewed	missense	c.961	p.V321L	1.000	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like	-	no_errors	168	17	9.19	663	360	35.19	1	3	75.00
ENSG00000215720	0	genome.wustl.edu	36	1	15391332	15391333	+	Splice_Site	INS	-	-	AGCGTAAGTACACGGGTGG			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	-	-	-	AGCGTAAGTACACGGGTGG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8370b0ee-a7e7-4fbb-a04e-b31c1d1c7b3c	fd834a25-f907-4646-8a91-2a1d97db9aaf	1	15391332	15391333	-	AGCGTAAGTACACGGGTGG	INS	ENSG00000215720	ENST00000400795	human	ensembl	54_36p	-1	known	splice_site_ins	c.NULL	NULL	0.994:0.991	-	-	-	no_coding_region:pseudogene	NA	NA	NA	NA	NA	NA	NA	NA	NA
OVGP1	0	genome.wustl.edu	36	1	111759025	111759048	+	In_Frame_Del	DEL	TCACAGACTGATGACTCACAGGGG	TCACAGACTGATGACTCACAGGGG	-			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	TCACAGACTGATGACTCACAGGGG	TCACAGACTGATGACTCACAGGGG	TCACAGACTGATGACTCACAGGGG	-	TCACAGACTGATGACTCACAGGGG	TCACAGACTGATGACTCACAGGGG	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8370b0ee-a7e7-4fbb-a04e-b31c1d1c7b3c	fd834a25-f907-4646-8a91-2a1d97db9aaf	1	111759025	111759048	TCACAGACTGATGACTCACAGGGG	-	DEL	OVGP1	NM_002557.3	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1621_1598	p.TPVSHQSV533in_frame_del	0.115:0.128:0.134:0.121:0.100:0.104:0.104:0.104:0.104:0.105:0.099:0.087:0.066:0.056:0.038:0.029:0.001:0.002:0.076:0.129:0.139:0.142:0.139:0.125	NULL	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
ENSG00000220279	0	genome.wustl.edu	36	8	105463270	105463289	+	Frame_Shift_Del	DEL	ACACACACACACACACACAT	ACACACACACACACACACAT	-	rs71889021		TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	ACACACACACACACACACAT	ACACACACACACACACACAT	ACACACACACACACACACAT	-	ACACACACACACACACACAT	ACACACACACACACACACAT	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	8370b0ee-a7e7-4fbb-a04e-b31c1d1c7b3c	fd834a25-f907-4646-8a91-2a1d97db9aaf	8	105463270	105463289	ACACACACACACACACACAT	-	DEL	ENSG00000220279	ENST00000404280	human	ensembl	54_36p	-1	known	frame_shift_del	c.155_136	p.M46fs	0.001:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.001:0.002:0.001:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
