Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACTRT2	140625	broad.mit.edu	37	1	2938328	2938328	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:2938328T>A	uc001ajz.2	+	1	283	c.78T>A	c.(76-78)TCT>TCA	p.S26S		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	26						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CGGGCCTGTCTGGGGAGTTTG	0.582			NA											8	40					0	0	0.006214	0	0
AJAP1	55966	broad.mit.edu	37	1	4832465	4832465	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:4832465C>A	uc001alm.1	+	4	1424	c.1043C>A	c.(1042-1044)ACG>AAG	p.T348K	AJAP1_uc001aln.2_Missense_Mutation_p.T348K	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	348	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		GACATATTCACGGCCTATAAC	0.617			NA											15	50					5.01169e-05	5.61081e-05	0.00499	1	0
UBE4B	10277	broad.mit.edu	37	1	10211596	10211596	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:10211596C>T	uc001aqs.3	+	21	3616	c.2903C>T	c.(2902-2904)CCT>CTT	p.P968L	UBE4B_uc001aqr.3_Missense_Mutation_p.P839L|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.P423L|UBE4B_uc001aqt.1_Missense_Mutation_p.P308L	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	968					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TTGTTGGTACCTTCCCTGATG	0.458			NA											35	131					0	0	0.004289	0	0
MFN2	9927	broad.mit.edu	37	1	12061527	12061527	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:12061527C>T	uc001atn.3	+	9	1339	c.886C>T	c.(886-888)CAG>TAG	p.Q296*	MFN2_uc009vni.2_Nonsense_Mutation_p.Q296*	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	296	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		GGATCGATCCCAGGCCGGGGA	0.577			NA											6	28					0	0	0.001984	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12251948	12251948	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:12251948A>T	uc001att.2	+	4	514	c.425A>T	c.(424-426)AAG>ATG	p.K142M	TNFRSF1B_uc001atu.2_Translation_Start_Site|TNFRSF1B_uc009vnk.2_RNA	NM_001066	NP_001057	P20333	TNR1B_HUMAN	tumor necrosis factor receptor 2 precursor	142	TNFR-Cys 3.|Extracellular (Potential).				apoptosis	extracellular region|integral to membrane|membrane raft|plasma membrane	tumor necrosis factor receptor activity			liver(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.72e-05)|all_lung(284;9.92e-05)|Renal(390;0.000147)|Colorectal(325;0.000584)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;5.52e-07)|COAD - Colon adenocarcinoma(227;0.000345)|BRCA - Breast invasive adenocarcinoma(304;0.000353)|Kidney(185;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00302)|STAD - Stomach adenocarcinoma(313;0.00815)|READ - Rectum adenocarcinoma(331;0.0284)	Etanercept(DB00005)|Infliximab(DB00065)	CCGCTGCGCAAGTGCCGCCCG	0.687			NA											7	20					0	0	0.00308	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919018	12919018	+	Missense_Mutation	SNP	C	C	A	rs150885452	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:12919018C>A	uc001aum.1	+	2	241	c.154C>A	c.(154-156)CTG>ATG	p.L52M		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	52											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCCAGACTCTGACGGTGAT	0.577			NA											33	106					9.39024e-22	1.46357e-21	0.009718	1	0
CELA2A	63036	broad.mit.edu	37	1	15789916	15789916	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:15789916T>A	uc001awk.2	+	5	418	c.392T>A	c.(391-393)GTC>GAC	p.V131D		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	131	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GCTAACCCCGTCTCCCTCACC	0.612			NA											17	64					0	0	0.001882	0	0
SPEN	23013	broad.mit.edu	37	1	16261133	16261133	+	Missense_Mutation	SNP	G	G	C	rs140025266	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:16261133G>C	uc001axk.1	+	11	8602	c.8398G>C	c.(8398-8400)GCG>CCG	p.A2800P	SPEN_uc010obp.1_Missense_Mutation_p.A2759P	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2800	Interaction with RBPSUH (By similarity).				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TCCGGCAGACGCGGGCTCAGG	0.592			NA											3	50					0	0	0.009096	0	0
CLCNKA	1187	broad.mit.edu	37	1	16352635	16352635	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:16352635G>C	uc001axu.2	+	5	471	c.391G>C	c.(391-393)GCG>CCG	p.A131P	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.A131P|CLCNKA_uc010obw.1_Missense_Mutation_p.A88P|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'Flank|CLCNKA_uc010oby.1_5'Flank	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	131					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	GACCATGTTGGCGGGTGTGAT	0.522			NA											71	280					0	0	0.00361	0	0
MST1P9	11223	broad.mit.edu	37	1	17085041	17085041	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:17085041C>T	uc010ock.1	-	11	1434	c.1434G>A	c.(1432-1434)CGG>CGA	p.R478R	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.R52R	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GCTGATCCAGCCGATCCACCC	0.607			NA											6	107					0	0	0.001984	0	0
PADI1	29943	broad.mit.edu	37	1	17570704	17570704	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:17570704C>A	uc001bah.1	+	16	2050	c.1958C>A	c.(1957-1959)CCC>CAC	p.P653H	PADI1_uc010oco.1_Missense_Mutation_p.P210H|PADI1_uc010ocp.1_Missense_Mutation_p.P168H|PADI1_uc010ocq.1_Missense_Mutation_p.P124H|PADI1_uc009vpb.1_Missense_Mutation_p.P47T	NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	653					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	CGCAGGAAGCCCTTTCCCTTC	0.602	Esophageal Squamous(80;414 1257 4580 27746 50832)		NA											24	76					1.96895e-08	2.4744e-08	0.00278	1	0
PADI4	23569	broad.mit.edu	37	1	17668497	17668497	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:17668497C>T	uc001baj.2	+	7	740	c.712C>T	c.(712-714)CTG>TTG	p.L238L	PADI4_uc009vpc.2_Silent_p.L238L	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	238					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CTCTCACTACCTGATGGTCCC	0.607			NA											12	45					0	0	0.001368	0	0
IGSF21	84966	broad.mit.edu	37	1	18691926	18691926	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:18691926G>T	uc001bau.1	+	6	1133	c.750G>T	c.(748-750)CTG>CTT	p.L250L	IGSF21_uc001bav.1_Silent_p.L71L	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	250						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CCCGTGGCCTGACCCCAGATC	0.642			NA											44	141					9.9191e-30	1.61373e-29	0.00874	1	0
HSPG2	3339	broad.mit.edu	37	1	22157584	22157584	+	Splice_Site	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:22157584C>G	uc001bfj.2	-	85	11603	c.11563_splice	c.e85-1	p.N3855_splice	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Splice_Site_p.N3856_splice	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor						angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GACCGCCATTCTGCAAAGCAG	0.637			NA											4	14					0	0	0.009096	0	0
EPHA8	2046	broad.mit.edu	37	1	22913015	22913015	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:22913015T>G	uc001bfx.1	+	4	991	c.866T>G	c.(865-867)CTG>CGG	p.L289R	EPHA8_uc001bfw.2_Missense_Mutation_p.L289R	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	289	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGGGACCAGCTGTGTGCCCGC	0.687			NA											7	50					0	0	0.006214	0	0
EPHA8	2046	broad.mit.edu	37	1	22924292	22924292	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:22924292C>G	uc001bfx.1	+	11	2179	c.2054C>G	c.(2053-2055)GCG>GGG	p.A685G		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	685	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CTGAGCGAGGCGTCCATCATG	0.662			NA											9	114					0	0	0.004482	0	0
LUZP1	7798	broad.mit.edu	37	1	23417697	23417697	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:23417697G>A	uc001bgk.2	-	4	3442	c.3058C>T	c.(3058-3060)CAC>TAC	p.H1020Y	LUZP1_uc010odv.1_Missense_Mutation_p.H1020Y|LUZP1_uc001bgl.2_Missense_Mutation_p.H1020Y|LUZP1_uc001bgm.1_Missense_Mutation_p.H1020Y	NM_033631	NP_361013	Q86V48	LUZP1_HUMAN	leucine zipper protein 1	1020						nucleus					0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Ovarian(437;0.00373)|Breast(348;0.00815)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.88e-27)|Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;4.31e-06)|GBM - Glioblastoma multiforme(114;8.64e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00176)|STAD - Stomach adenocarcinoma(196;0.0146)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0967)|LUSC - Lung squamous cell carcinoma(448;0.199)		CTTGCTGAGTGGTTCCAGGCT	0.383			NA											4	9					0	0	0.000602	0	0
DHDDS	79947	broad.mit.edu	37	1	26784343	26784343	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:26784343A>T	uc001bml.2	+	7	725	c.604A>T	c.(604-606)ATC>TTC	p.I202F	DHDDS_uc001bmk.2_Missense_Mutation_p.I202F|DHDDS_uc001bmm.2_Missense_Mutation_p.I109F|DHDDS_uc001bmn.2_Missense_Mutation_p.I163F|DHDDS_uc010ofd.1_Missense_Mutation_p.I168F	NM_205861	NP_995583	Q86SQ9	DHDDS_HUMAN	dehydrodolichyl diphosphate synthase isoform b	202							protein binding|transferase activity, transferring alkyl or aryl (other than methyl) groups			breast(3)	3		all_cancers(24;2.04e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.0161)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.166)|LUSC - Lung squamous cell carcinoma(448;0.239)		TCATCCTGACATCTTGATACG	0.458			NA											48	158					0	0	0.00361	0	0
SFRS4	6429	broad.mit.edu	37	1	29476680	29476680	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:29476680G>T	uc001bro.2	-	5	976	c.603C>A	c.(601-603)TCC>TCA	p.S201S	SFRS4_uc010ofy.1_Intron	NM_005626	NP_005617	Q08170	SRSF4_HUMAN	splicing factor, arginine/serine-rich 4	201	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|RNA binding				0		Colorectal(325;0.00161)|Breast(348;0.0364)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0529)|Lung NSC(340;0.0654)|all_lung(284;0.074)|Ovarian(437;0.104)|Medulloblastoma(700;0.151)		Colorectal(126;1.01e-07)|COAD - Colon adenocarcinoma(152;6.21e-06)|STAD - Stomach adenocarcinoma(196;0.0196)|BRCA - Breast invasive adenocarcinoma(304;0.0531)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.138)		TGCTCTTACGGGAATGTCTGC	0.423			NA											25	172					1.75199e-13	2.4505e-13	0.007291	1	0
TMEM39B	55116	broad.mit.edu	37	1	32566053	32566053	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:32566053G>A	uc010ogv.1	+	8	1272	c.1126G>A	c.(1126-1128)GAA>AAA	p.E376K	TMEM39B_uc010ogt.1_RNA|TMEM39B_uc010ogu.1_Missense_Mutation_p.E249K|TMEM39B_uc001bue.3_Missense_Mutation_p.E377K|TMEM39B_uc001buf.3_Missense_Mutation_p.E177K|TMEM39B_uc010ogw.1_Missense_Mutation_p.E177K	NM_018056	NP_060526	Q9GZU3	TM39B_HUMAN	transmembrane protein 39B	376						integral to membrane					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				GTGGACTGAAGAATGCATGTG	0.478			NA											6	34					0	0	0.001168	0	0
GRIK3	2899	broad.mit.edu	37	1	37271748	37271748	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:37271748C>A	uc001caz.2	-	14	2406	c.2271G>T	c.(2269-2271)GGG>GGT	p.G757G	GRIK3_uc001cba.1_Silent_p.G757G	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	757	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CAATGAGGCCCCCGATCTGGG	0.662			NA											7	83					2.17888e-05	2.47016e-05	0.006214	1	0
GRIK3	2899	broad.mit.edu	37	1	37324781	37324781	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:37324781G>T	uc001caz.2	-	7	1167	c.1032C>A	c.(1030-1032)ACC>ACA	p.T344T	GRIK3_uc001cba.1_Silent_p.T344T	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	344	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GGGAGTTCACGGTCATCTGTG	0.622			NA											23	146					5.35356e-11	7.05726e-11	0.00278	1	0
SNIP1	79753	broad.mit.edu	37	1	38019721	38019721	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:38019721T>A	uc001cbi.2	-	1	183	c.110A>T	c.(109-111)GAA>GTA	p.E37V	SNIP1_uc010oid.1_RNA|DNALI1_uc001cbj.2_5'Flank|DNALI1_uc010oie.1_5'Flank	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	37					production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				AGGTGCGACTTCTGGGCTGAG	0.741			NA											15	24					0	0	0.003163	0	0
KIAA0754	643314	broad.mit.edu	37	1	39880114	39880114	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:39880114C>A	uc009vvt.1	+	1	4939	c.4177C>A	c.(4177-4179)CCT>ACT	p.P1393T	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	1257											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGGGAAAGTGCCTCTGGCTGC	0.473			NA											9	36					0.000274275	0.000298378	0.004482	1	0
KIF2C	11004	broad.mit.edu	37	1	45232525	45232525	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:45232525G>T	uc001cmg.3	+	20	2114	c.1999G>T	c.(1999-2001)GAG>TAG	p.E667*	KIF2C_uc010olb.1_Nonsense_Mutation_p.E626*|KIF2C_uc010olc.1_Nonsense_Mutation_p.E554*|KIF2C_uc001cmh.3_Nonsense_Mutation_p.E613*	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	667					blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TGAGCTCTCTGAGATGACCGA	0.522			NA											20	25					3.5997e-14	5.10787e-14	0.002299	1	0
MUTYH	4595	broad.mit.edu	37	1	45797911	45797911	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:45797911G>T	uc001cnm.2	-	10	1067	c.851C>A	c.(850-852)GCC>GAC	p.A284D	MUTYH_uc009vxn.2_Missense_Mutation_p.A109D|MUTYH_uc001cnf.2_Missense_Mutation_p.A259D|MUTYH_uc009vxo.2_Missense_Mutation_p.A259D|MUTYH_uc001cng.2_Missense_Mutation_p.A270D|MUTYH_uc001cnj.2_Missense_Mutation_p.A167D|MUTYH_uc001cni.2_Missense_Mutation_p.A259D|MUTYH_uc001cnh.2_Missense_Mutation_p.A260D|MUTYH_uc001cno.2_Missense_Mutation_p.A167D|MUTYH_uc001cnk.2_Missense_Mutation_p.A144D|MUTYH_uc010oll.1_Intron|MUTYH_uc001cnl.2_Missense_Mutation_p.A273D|MUTYH_uc009vxp.2_Missense_Mutation_p.A287D|MUTYH_uc001cnn.2_Missense_Mutation_p.A274D	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	284					depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					ACACACTGTGGCCCCTAGCTC	0.622			NA	Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				10	44					0.000673444	0.000723852	0.008291	1	0
TMEM69	51249	broad.mit.edu	37	1	46159475	46159475	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:46159475G>A	uc001cor.1	+	3	838	c.642G>A	c.(640-642)CTG>CTA	p.L214L		NM_016486	NP_057570	Q5SWH9	TMM69_HUMAN	transmembrane protein 69	214						integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TTAAAGCCCTGAGGATAGTAG	0.368			NA											12	120					0	0	0.001855	0	0
IPP	3652	broad.mit.edu	37	1	46206734	46206734	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:46206734C>T	uc001cou.2	-	3	830	c.563G>A	c.(562-564)CGA>CAA	p.R188Q	IPP_uc001cos.3_Missense_Mutation_p.R188Q	NM_005897	NP_005888	Q9Y573	IPP_HUMAN	intracisternal A particle-promoted polypeptide	188						actin cytoskeleton|cytoplasm	actin binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTCTTCACTTCGCAAAATTTT	0.393			NA											22	167					0	0	0.002299	0	0
RAD54L	8438	broad.mit.edu	37	1	46727024	46727024	+	Silent	SNP	G	G	A	rs58878309		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:46727024G>A	uc009vye.2	+	9	972	c.858G>A	c.(856-858)CAG>CAA	p.Q286Q	RAD54L_uc001cpl.2_Silent_p.Q286Q|RAD54L_uc001cpm.1_Silent_p.Q106Q	NM_001142548	NP_001136020	Q92698	RAD54_HUMAN	RAD54-like protein	286	Helicase ATP-binding.				meiosis	nucleus	ATP binding|DNA binding|helicase activity			ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(166;0.155)	Breast(1374;0.0634)		KIRC - Kidney renal clear cell carcinoma(1967;0.000896)		GAGTCCTCCAGAAAGGAAGTG	0.483			NA						Direct_reversal_of_damage|Homologous_recombination					10	78					0	0	0.008291	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47582406	47582406	+	Splice_Site	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:47582406T>A	uc001cqu.1	+	11	1352	c.1349_splice	c.e11+2	p.R450_splice		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1							endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						TGGATTAAGGTAAAGACTCAA	0.428			NA											5	34					0	0	0.001168	0	0
SLC5A9	200010	broad.mit.edu	37	1	48708153	48708153	+	Missense_Mutation	SNP	C	C	T	rs138580488		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:48708153C>T	uc001cro.2	+	13	1754	c.1702C>T	c.(1702-1704)CGG>TGG	p.R568W	SLC5A9_uc001crn.2_Missense_Mutation_p.R593W|SLC5A9_uc010omt.1_Missense_Mutation_p.R582W|SLC5A9_uc001crp.2_Missense_Mutation_p.R235W|SLC5A9_uc010omu.1_Missense_Mutation_p.R235W|SLC5A9_uc009vyt.1_RNA	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	568	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						ATGGTGGACTCGGAACTGCCC	0.597			NA											23	123					0	0	0.003954	0	0
C8A	731	broad.mit.edu	37	1	57349153	57349153	+	Splice_Site	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:57349153G>T	uc001cyo.2	+	6	787	c.655_splice	c.e6-1	p.A219_splice		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide						complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						TTTTTTTTCAGGCCCTGGCAG	0.318			NA											18	62					4.96729e-08	6.13506e-08	0.008871	1	0
C8B	732	broad.mit.edu	37	1	57420396	57420396	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:57420396T>G	uc001cyp.2	-	4	563	c.496A>C	c.(496-498)ATG>CTG	p.M166L	C8B_uc010oon.1_Missense_Mutation_p.M104L|C8B_uc010ooo.1_Missense_Mutation_p.M114L	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	166	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TATTGGTCCATTTCATGCTGA	0.453			NA											21	115					0	0	0.002299	0	0
DOCK7	85440	broad.mit.edu	37	1	62979532	62979532	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:62979532C>A	uc001daq.2	-	32	4008	c.3974G>T	c.(3973-3975)AGT>ATT	p.S1325I	DOCK7_uc001dan.2_Missense_Mutation_p.S1186I|DOCK7_uc001dao.2_Missense_Mutation_p.S1186I|DOCK7_uc001dap.2_Missense_Mutation_p.S1294I|DOCK7_uc001dam.2_Missense_Mutation_p.S505I|DOCK7_uc010oov.1_Intron	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1325					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						AAGGCTTCGACTTGATTCTGC	0.403			NA											11	104					0.000978159	0.00104824	0.000978	1	0
LRRC7	57554	broad.mit.edu	37	1	70488916	70488916	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:70488916G>C	uc001dep.2	+	15	1569	c.1539G>C	c.(1537-1539)CAG>CAC	p.Q513H	LRRC7_uc009wbg.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	513						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GTGATCAGCAGATCCAAGATA	0.582			NA											10	69					0	0	0.006214	0	0
LRRC7	57554	broad.mit.edu	37	1	70505055	70505055	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:70505055G>T	uc001dep.2	+	19	3464	c.3434G>T	c.(3433-3435)AGA>ATA	p.R1145I	LRRC7_uc009wbg.2_Missense_Mutation_p.R429I|LRRC7_uc001deq.2_Missense_Mutation_p.R386I	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1145						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGGTACGGCAGACCCCCATAT	0.542			NA											12	108					2.80697e-09	3.59039e-09	0.000978	1	0
C1orf173	127254	broad.mit.edu	37	1	75037434	75037434	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:75037434C>A	uc001dgg.2	-	14	4179	c.3960G>T	c.(3958-3960)ATG>ATT	p.M1320I		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1320	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTTCTCCTTCCATGTCCCCGT	0.557			NA											45	160					4.18559e-23	6.59046e-23	0.00361	1	0
SLC44A5	204962	broad.mit.edu	37	1	75684224	75684224	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:75684224C>A	uc001dgu.2	-	17	1624	c.1480G>T	c.(1480-1482)GAT>TAT	p.D494Y	SLC44A5_uc001dgt.2_Missense_Mutation_p.D494Y|SLC44A5_uc001dgs.2_Missense_Mutation_p.D452Y|SLC44A5_uc001dgr.2_Missense_Mutation_p.D452Y|SLC44A5_uc010oqz.1_Missense_Mutation_p.D533Y|SLC44A5_uc010ora.1_Missense_Mutation_p.D488Y|SLC44A5_uc010orb.1_Missense_Mutation_p.D364Y	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	494	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						GGGATGTCATCAGGTTTTTTC	0.423			NA											16	164					1.5739e-10	2.05714e-10	0.004007	1	0
MSH4	4438	broad.mit.edu	37	1	76313920	76313920	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:76313920C>T	uc001dhd.1	+	8	1230	c.1189C>T	c.(1189-1191)CAG>TAG	p.Q397*		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	397					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						TGATACAGAGCAGCTTCTTTC	0.264			NA						MMR					5	81					0	0	0.000602	0	0
MSH4	4438	broad.mit.edu	37	1	76363740	76363740	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:76363740A>T	uc001dhd.1	+	18	2545	c.2504A>T	c.(2503-2505)AAG>ATG	p.K835M		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	835					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						AAACTTTCTAAGGGACTCACA	0.303			NA						MMR					11	96					0	0	0.000978	0	0
ASB17	127247	broad.mit.edu	37	1	76397818	76397818	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:76397818T>A	uc001dhe.1	-	1	299	c.159A>T	c.(157-159)AAA>AAT	p.K53N	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	53					intracellular signal transduction					ovary(1)	1						ACCTCAGAATTTTTGCCAGTG	0.398			NA											40	110					0	0	0.009718	0	0
AK5	26289	broad.mit.edu	37	1	77752625	77752625	+	Splice_Site	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:77752625G>T	uc001dhn.2	+	2	318	c.61_splice	c.e2-1	p.S21_splice	AK5_uc001dho.2_Intron|AK5_uc001dhm.1_Splice_Site_p.S21_splice	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1						ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						TTATATTTCAGAGCCTTTTGA	0.274			NA											15	69					6.72482e-11	8.85408e-11	0.003163	1	0
IFI44	10561	broad.mit.edu	37	1	79120848	79120848	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:79120848C>G	uc001dip.3	+	4	768	c.644C>G	c.(643-645)ACG>AGG	p.T215R	IFI44_uc010orr.1_Missense_Mutation_p.T215R|IFI44_uc010ors.1_5'UTR	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	215					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						GGGCATGTAACGCATCAGGCT	0.453			NA											25	67					0	0	0.008361	0	0
LPHN2	23266	broad.mit.edu	37	1	82409232	82409232	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:82409232C>A	uc001dit.3	+	6	1158	c.977C>A	c.(976-978)TCA>TAA	p.S326*	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Nonsense_Mutation_p.S326*|LPHN2_uc001div.2_Nonsense_Mutation_p.S326*|LPHN2_uc009wcd.2_Nonsense_Mutation_p.S326*	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	326	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GTGGTTAGGTCAGTTTATCAA	0.408			NA											13	118					4.3838e-07	5.25178e-07	0.001855	1	0
HFM1	164045	broad.mit.edu	37	1	91728125	91728125	+	Silent	SNP	C	C	A	rs148254635		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:91728125C>A	uc001doa.3	-	37	4099	c.3999G>T	c.(3997-3999)TCG>TCT	p.S1333S	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Silent_p.S1012S|HFM1_uc001dob.3_Silent_p.S521S	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	1333							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		AAGAAATATCCGACATCTCAT	0.299			NA											15	58					1.15088e-07	1.40852e-07	0.004007	1	0
HFM1	164045	broad.mit.edu	37	1	91781705	91781705	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:91781705T>C	uc001doa.3	-	27	3035	c.2935A>G	c.(2935-2937)AAA>GAA	p.K979E	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Missense_Mutation_p.K658E|HFM1_uc001dob.3_Missense_Mutation_p.K167E|HFM1_uc010osv.1_Missense_Mutation_p.K663E	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	979	SEC63.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		ACAGTTTCTTTTATCTGGGTT	0.264			NA											8	54					0	0	0.006214	0	0
GFI1	2672	broad.mit.edu	37	1	92941703	92941703	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:92941703G>A	uc001dou.3	-	7	1316	c.1152C>T	c.(1150-1152)ATC>ATT	p.I384I	GFI1_uc001dov.3_Silent_p.I384I|GFI1_uc001dow.3_Silent_p.I384I	NM_001127215	NP_001120687	Q99684	GFI1_HUMAN	growth factor independent 1	384	C2H2-type 5.				negative regulation of calcidiol 1-monooxygenase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1/S phase of mitotic cell cycle|transcription, DNA-dependent|viral reproduction	nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)	1		all_lung(203;0.00292)|Lung NSC(277;0.0115)|all_neural(321;0.185)|Glioma(108;0.203)		OV - Ovarian serous cystadenocarcinoma(397;9.04e-07)|Epithelial(280;1.17e-05)|all cancers(265;5.61e-05)|GBM - Glioblastoma multiforme(16;0.0191)		GGCTGTGGGTGATGAGGTTGG	0.607			NA											4	13					0	0	0.009096	0	0
LPPR5	163404	broad.mit.edu	37	1	99470110	99470110	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:99470110C>T	uc001dsb.2	-	1	340	c.118G>A	c.(118-120)GTG>ATG	p.V40M	uc001dsd.1_RNA|LPPR5_uc001dsc.2_Missense_Mutation_p.V40M	NM_001037317	NP_001032394	Q32ZL2	LPPR5_HUMAN	phosphatidic acid phosphatase type 2d isoform 1	40						integral to membrane	hydrolase activity				0						AAGCCCTGCACGTTCACGGTG	0.632			NA											7	40					0	0	0.00308	0	0
VCAM1	7412	broad.mit.edu	37	1	101194849	101194849	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:101194849C>A	uc001dti.2	+	5	1235	c.1115C>A	c.(1114-1116)CCT>CAT	p.P372H	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Missense_Mutation_p.P310H	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	372	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	ACCCTGAGCCCTGTGAGTTTT	0.512			NA											17	162					0.000958276	0.00102898	0.007413	1	0
KCND3	3752	broad.mit.edu	37	1	112318702	112318702	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:112318702C>A	uc001ebu.1	-	8	2445	c.1965G>T	c.(1963-1965)TTG>TTT	p.L655F	KCND3_uc001ebv.1_Missense_Mutation_p.L636F	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	655	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AGTGGTTTTACAAGGCGGAGA	0.602			NA											10	84					3.07112e-06	3.56806e-06	0.000978	1	0
OLFML3	56944	broad.mit.edu	37	1	114524191	114524191	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:114524191A>T	uc001eer.1	+	3	1130	c.1021A>T	c.(1021-1023)AGT>TGT	p.S341C	OLFML3_uc001ees.1_Missense_Mutation_p.S321C|OLFML3_uc001eet.1_Missense_Mutation_p.S197C	NM_020190	NP_064575	Q9NRN5	OLFL3_HUMAN	olfactomedin-like 3 precursor	341	Olfactomedin-like.				multicellular organismal development	extracellular region					0	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCGTCCTGCCAGTCGGGCCCG	0.592			NA											8	65					0	0	0.006214	0	0
AMPD1	270	broad.mit.edu	37	1	115220534	115220534	+	Missense_Mutation	SNP	G	G	C	rs144014236	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:115220534G>C	uc001efe.1	-	9	1305	c.1221C>G	c.(1219-1221)ATC>ATG	p.I407M	AMPD1_uc001eff.1_Missense_Mutation_p.I403M	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	407					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GCCTCACCTTGATGATAGTGG	0.303			NA											40	133					0	0	0.003214	0	0
TBX15	6913	broad.mit.edu	37	1	119427774	119427774	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:119427774C>A	uc001ehl.1	-	8	1387	c.1072G>T	c.(1072-1074)GCC>TCC	p.A358S	TBX15_uc009whj.1_Missense_Mutation_p.A182S	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	464						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CCACCGTAGGCTTCCATCTTG	0.562			NA											7	56					0.00198382	0.00210086	0.001984	1	0
TBX15	6913	broad.mit.edu	37	1	119427872	119427872	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:119427872G>T	uc001ehl.1	-	8	1289	c.974C>A	c.(973-975)GCC>GAC	p.A325D	TBX15_uc009whj.1_Missense_Mutation_p.A149D	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	431						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GGGCTGAGTGGCTGAAGTGGT	0.557			NA											7	47					0.00307968	0.00324859	0.00308	1	0
ANKRD35	148741	broad.mit.edu	37	1	145561457	145561457	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:145561457C>T	uc001eob.1	+	10	1253	c.1145C>T	c.(1144-1146)ACA>ATA	p.T382I	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.T225I	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	382										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCTGAGAGTACACAAGAGCTA	0.547	Melanoma(9;127 754 22988 51047)		NA											18	40					0	0	0.008871	0	0
HORMAD1	84072	broad.mit.edu	37	1	150689710	150689711	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:150689710_150689711CC>AA	uc001evk.1	-	3	187_188	c.81_82GG>TT	c.(79-84)TTGGTG>TTTTTG	p.27_28LV>FL	HORMAD1_uc001evl.1_Missense_Mutation_p.27_28LV>FL|HORMAD1_uc001evm.1_5'UTR	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	27_28	HORMA.				blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			TTCACTAACACCAAAGACTGGT	0.347			NA											14	223					0	0	0.004672	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151205138	151205138	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:151205138G>T	uc001exj.2	+	7	1050	c.598G>T	c.(598-600)GAG>TAG	p.E200*	PIP5K1A_uc001exi.2_Nonsense_Mutation_p.E187*|PIP5K1A_uc010pcu.1_Nonsense_Mutation_p.E188*|PIP5K1A_uc001exk.2_Nonsense_Mutation_p.E187*|PIP5K1A_uc010pcv.1_5'Flank	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	200	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			CCAACATAAAGAGGCGGAATT	0.502	Pancreas(80;36 1443 2325 16095 21302)		NA											5	133					3.59834e-05	4.03688e-05	0.001168	1	0
TUFT1	7286	broad.mit.edu	37	1	151537034	151537034	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:151537034A>G	uc001eyl.2	+	5	420	c.358A>G	c.(358-360)ATA>GTA	p.I120V	TUFT1_uc001eym.2_Missense_Mutation_p.I95V|TUFT1_uc010pdf.1_Missense_Mutation_p.I139V|TUFT1_uc010pdg.1_Missense_Mutation_p.I68V	NM_020127	NP_064512	Q9NNX1	TUFT1_HUMAN	tuftelin 1 isoform 1	120	Potential.				bone mineralization|odontogenesis	cytoplasm|extracellular region	structural constituent of tooth enamel				0	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			CCGGGAGGATATAAGTAGCAA	0.527			NA											11	63					0	0	0.000978	0	0
HRNR	388697	broad.mit.edu	37	1	152193135	152193135	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:152193135G>A	uc001ezt.1	-	3	1046	c.970C>T	c.(970-972)CAA>TAA	p.Q324*		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	324	3.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCCGTGTTGGCCGTGGCTG	0.607			NA											8	129					0	0	0.001855	0	0
FLG	2312	broad.mit.edu	37	1	152282982	152282982	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:152282982G>T	uc001ezu.1	-	3	4416	c.4380C>A	c.(4378-4380)CCC>CCA	p.P1460P	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1460	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCCAGTGCTGGGTGCAGTCT	0.577			NA							Ichthyosis				61	423					6.83704e-37	1.13634e-36	0.00361	1	0
FLG	2312	broad.mit.edu	37	1	152283359	152283359	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:152283359C>A	uc001ezu.1	-	3	4039	c.4003G>T	c.(4003-4005)GAG>TAG	p.E1335*	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1335	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGGAAGACTCTGTGTGATGA	0.463			NA							Ichthyosis				42	738					1.56989e-16	2.30038e-16	0.00361	1	0
KPRP	448834	broad.mit.edu	37	1	152733252	152733252	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:152733252G>A	uc001fal.1	+	2	1246	c.1188G>A	c.(1186-1188)CTG>CTA	p.L396L		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	396	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTCACCACTGCAGCGATGTC	0.612			NA											25	86					0	0	0.00632	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153312856	153312856	+	Splice_Site	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:153312856C>A	uc001fbo.2	-	7	889	c.824_splice	c.e7+1	p.N275_splice	PGLYRP4_uc001fbp.2_Splice_Site_p.N271_splice	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta						defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GACCCACTCACTTATAACCAA	0.512			NA											73	91					1.43161e-34	2.37207e-34	0.00361	1	0
NPR1	4881	broad.mit.edu	37	1	153655054	153655054	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:153655054G>T	uc001fcs.3	+	5	1673	c.1252G>T	c.(1252-1254)GGT>TGT	p.G418C	NPR1_uc010pdz.1_Missense_Mutation_p.G164C|NPR1_uc010pea.1_5'Flank	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	418	Extracellular (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TCCCGAGAATGGTGCCTTCAG	0.532	Pancreas(141;1349 1870 15144 15830 40702)		NA											4	55					1.23904e-05	1.40913e-05	0.000602	1	0
INTS3	65123	broad.mit.edu	37	1	153745702	153745702	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:153745702C>T	uc009wom.2	+	31	3306	c.3085C>T	c.(3085-3087)CGG>TGG	p.R1029W	INTS3_uc001fct.2_Missense_Mutation_p.R1029W|INTS3_uc001fcu.2_Missense_Mutation_p.R721W|INTS3_uc001fcv.2_Missense_Mutation_p.R823W|INTS3_uc010peb.1_Missense_Mutation_p.R889W|INTS3_uc001fcw.2_Missense_Mutation_p.R542W|INTS3_uc010pec.1_Missense_Mutation_p.R542W|INTS3_uc001fcy.2_Missense_Mutation_p.R392W|INTS3_uc001fcx.2_Missense_Mutation_p.R326W	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	1030					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GCCTACCAAGCGGAAACGAAA	0.592			NA											26	277					0	0	0.009535	0	0
CHRNB2	1141	broad.mit.edu	37	1	154544111	154544111	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:154544111C>A	uc001ffg.2	+	5	1076	c.812C>A	c.(811-813)TCA>TAA	p.S271*		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	271	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	TTGTGCATCTCAGTGCTGCTG	0.577			NA											34	211					4.11147e-13	5.721e-13	0.003755	1	0
ADAR	103	broad.mit.edu	37	1	154571062	154571062	+	Splice_Site	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:154571062C>A	uc001ffh.2	-	3	1802	c.1602_splice	c.e3-1	p.R534_splice	ADAR_uc001ffj.2_Splice_Site_p.R534_splice|ADAR_uc001ffi.2_Splice_Site_p.R534_splice|ADAR_uc001ffk.2_Splice_Site_p.R239_splice	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a						adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		GAATTTAAATCTTGACGGAAA	0.478			NA											19	198					4.26978e-12	5.83572e-12	0.00333	1	0
MUC1	4582	broad.mit.edu	37	1	155161953	155161953	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:155161953T>C	uc010pft.1	-	2	246	c.180A>G	c.(178-180)GTA>GTG	p.V60V	RAG1AP1_uc010pey.1_Intron|MUC1_uc001fhy.2_5'Flank|MUC1_uc001fhz.2_5'Flank|MUC1_uc010pfb.1_Intron|MUC1_uc010pfc.1_Intron|MUC1_uc009wph.2_Intron|MUC1_uc010pfd.1_Intron|MUC1_uc010pfe.1_Intron|MUC1_uc010pff.1_Intron|MUC1_uc009wpi.2_Intron|MUC1_uc010pfg.1_Intron|MUC1_uc010pfh.1_Intron|MUC1_uc010pfi.1_Intron|MUC1_uc010pfj.1_Intron|MUC1_uc010pfk.1_Intron|MUC1_uc010pfl.1_Intron|MUC1_uc001fin.2_Intron|MUC1_uc009wpk.2_Intron|MUC1_uc001fip.2_Intron|MUC1_uc009wqg.2_Intron|MUC1_uc009wpo.2_Intron|MUC1_uc009wps.2_Intron|MUC1_uc009wpt.2_Intron|MUC1_uc001fic.2_Intron|MUC1_uc009wpu.2_Intron|MUC1_uc009wpq.2_Intron|MUC1_uc009wpv.2_Intron|MUC1_uc001fim.2_Intron|MUC1_uc001fib.2_Intron|MUC1_uc009wpw.2_Intron|MUC1_uc001fie.2_Intron|MUC1_uc009wpr.2_Intron|MUC1_uc001fig.2_Intron|MUC1_uc001fif.2_Intron|MUC1_uc009wpx.2_Intron|MUC1_uc001fid.2_Intron|MUC1_uc009wpj.2_Intron|MUC1_uc001fij.2_Intron|MUC1_uc009wpy.2_Intron|MUC1_uc010pfm.1_Intron|MUC1_uc001fiq.2_Intron|MUC1_uc009wpz.2_Intron|MUC1_uc010pfn.1_Intron|MUC1_uc009wqa.2_Intron|MUC1_uc010pfo.1_Intron|MUC1_uc010pfp.1_Intron|MUC1_uc001fii.2_Intron|MUC1_uc001fih.2_Intron|MUC1_uc001fia.2_Intron|MUC1_uc009wqc.2_Intron|MUC1_uc009wqd.2_Intron|MUC1_uc009wqb.2_Intron|MUC1_uc010pfq.1_Intron|MUC1_uc010pfr.1_Intron|MUC1_uc001fit.2_Intron|MUC1_uc009wqe.2_Intron|MUC1_uc001fil.2_Intron|MUC1_uc009wpm.2_Intron|MUC1_uc009wpp.2_Intron|MUC1_uc010pfs.1_Intron|MUC1_uc001fik.2_Intron|MUC1_uc001fio.2_Intron|MUC1_uc009wqf.2_Intron|MUC1_uc009wpl.2_Intron|MUC1_uc009wpn.2_Intron|MUC1_uc001fis.1_Intron|uc009wqh.2_5'Flank|MUC1_uc001fiv.1_Silent_p.V69V|MUC1_uc001fiw.1_Silent_p.V60V			P15941	MUC1_HUMAN	SubName: Full=MUC1 isoform M13;	60	Extracellular (Potential).					apical plasma membrane|cell surface|cytoplasm|extracellular region|integral to plasma membrane|nucleus	protein binding			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;5.31e-10)|all cancers(21;2.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGCTGGAGAGTACGCTGCTGG	0.587			NA	T	IGH@	B-NHL								32	213					0	0	0.004289	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155931973	155931973	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:155931973T>A	uc001fmt.2	-	10	1260	c.1142A>T	c.(1141-1143)CAG>CTG	p.Q381L	ARHGEF2_uc001fmr.2_Missense_Mutation_p.Q353L|ARHGEF2_uc001fms.2_Missense_Mutation_p.Q380L|ARHGEF2_uc001fmu.2_Missense_Mutation_p.Q425L|ARHGEF2_uc010pgt.1_Missense_Mutation_p.Q354L|ARHGEF2_uc010pgu.1_Missense_Mutation_p.Q426L	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	381	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GATGCACTCCTGTACCCCGTG	0.642	Melanoma(178;35 2768 6610 28839)		NA											20	162					0	0	0.004656	0	0
GPATCH4	54865	broad.mit.edu	37	1	156565192	156565192	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:156565192C>T	uc001fpm.2	-	8	980	c.941G>A	c.(940-942)GGA>GAA	p.G314E	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.2_Missense_Mutation_p.G309E	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1	309						intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCCTTTTCCTCCTTCCTCCAA	0.522			NA											42	472					0	0	0.003214	0	0
BCAN	63827	broad.mit.edu	37	1	156617860	156617860	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:156617860G>T	uc001fpp.2	+	5	1063	c.727G>T	c.(727-729)GAT>TAT	p.D243Y	BCAN_uc001fpo.2_Missense_Mutation_p.D243Y	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	243	Link 1.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGTGGACCCGGATGACCTCTA	0.547			NA											122	162					7.84169e-52	1.31961e-51	0.00361	1	0
NTRK1	4914	broad.mit.edu	37	1	156845387	156845387	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:156845387C>A	uc001fqh.1	+	12	1486	c.1430C>A	c.(1429-1431)TCC>TAC	p.S477Y	NTRK1_uc001fqf.1_Missense_Mutation_p.S441Y|NTRK1_uc009wsi.1_Missense_Mutation_p.S176Y|NTRK1_uc001fqi.1_Missense_Mutation_p.S471Y|NTRK1_uc009wsk.1_Missense_Mutation_p.S471Y	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	477	Cytoplasmic (Potential).|Interaction with SQSTM1 (By similarity).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	AGCTCCCTGTCCCCCACCGAG	0.612			NA	T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			9	120					0.000673444	0.000723852	0.008291	1	0
NTRK1	4914	broad.mit.edu	37	1	156849069	156849069	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:156849069G>A	uc001fqh.1	+	15	2017	c.1961G>A	c.(1960-1962)CGC>CAC	p.R654H	NTRK1_uc001fqf.1_Missense_Mutation_p.R618H|NTRK1_uc009wsi.1_Missense_Mutation_p.R353H|NTRK1_uc001fqi.1_Missense_Mutation_p.R648H|NTRK1_uc009wsk.1_Missense_Mutation_p.R651H	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	654	Cytoplasmic (Potential).|Protein kinase.		R -> C (in CIPA).		activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CTGGCCACACGCAACTGTCTA	0.597			NA	T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			9	92					0	0	0.006214	0	0
PEAR1	375033	broad.mit.edu	37	1	156874558	156874558	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:156874558G>A	uc001fqj.1	+	3	236	c.120G>A	c.(118-120)AAG>AAA	p.K40K	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	40	EMI.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCACCACCAAGGAGTCCCACT	0.667			NA											5	228					0	0	0.001168	0	0
OR10X1	128367	broad.mit.edu	37	1	158548798	158548798	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:158548798G>T	uc010pin.1	-	1	892	c.892C>A	c.(892-894)CTC>ATC	p.L298I		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	298	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ATGGGGCTGAGGAAGGGGGTA	0.398			NA											59	293					2.22609e-26	3.55711e-26	0.00361	1	0
SPTA1	6708	broad.mit.edu	37	1	158644338	158644338	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:158644338G>T	uc001fst.1	-	9	1439	c.1240C>A	c.(1240-1242)CAG>AAG	p.Q414K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	414	Spectrin 5.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ACCTTATGCTGCTGATGCCTG	0.512			NA											22	250					7.41877e-09	9.37796e-09	0.001882	1	0
OR6K6	128371	broad.mit.edu	37	1	158725187	158725187	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:158725187G>T	uc001fsw.1	+	1	582	c.582G>T	c.(580-582)TTG>TTT	p.L194F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TTTCCACCTTGCCTTTCTGTG	0.478			NA											12	178					5.16669e-11	6.83602e-11	0.000978	1	0
FCER1A	2205	broad.mit.edu	37	1	159272177	159272177	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:159272177C>A	uc001ftq.2	+	2	122	c.23C>A	c.(22-24)CCT>CAT	p.P8H		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	8						integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	ATGGAATCCCCTACTCTACTG	0.478			NA											20	314					1.64293e-13	2.30396e-13	0.00333	1	0
CD84	8832	broad.mit.edu	37	1	160535278	160535279	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:160535278_160535279CC>AA	uc001fwh.3	-	2	327_328	c.303_304GG>TT	c.(301-306)ATGGAA>ATTTAA	p.101_102ME>I*	CD84_uc001fwf.3_Nonsense_Mutation_p.101_102ME>I*|CD84_uc001fwg.3_Nonsense_Mutation_p.101_102ME>I*|CD84_uc009wtn.2_Nonsense_Mutation_p.101_102ME>I*|CD84_uc001fwi.3_Intron|CD84_uc001fwj.2_Nonsense_Mutation_p.101_102ME>I*|CD84_uc001fwk.2_Nonsense_Mutation_p.101_102ME>I*	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	101_102	Extracellular (Potential).				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CCTGCGTCTTCCATCCTCAGAT	0.46			NA											23	330					0	0	0.004672	0	0
ATF6	22926	broad.mit.edu	37	1	161751777	161751777	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:161751777C>T	uc001gbr.2	+	3	302	c.235C>T	c.(235-237)CAA>TAA	p.Q79*	ATF6_uc001gbq.1_Nonsense_Mutation_p.Q79*	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	79	Cytoplasmic (Potential).|Transcription activation.				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			CATCAACAACCAAATCTGTAC	0.323			NA											3	73					0	0	0.001168	0	0
OLFML2B	25903	broad.mit.edu	37	1	161953963	161953963	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:161953963G>T	uc001gbu.2	-	8	2179	c.1755C>A	c.(1753-1755)ATC>ATA	p.I585I	OLFML2B_uc001gbt.2_Silent_p.I68I|OLFML2B_uc010pkq.1_Silent_p.I586I	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	585	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			CGTACTTGATGATGTTGCGGG	0.607			NA											16	111					5.35267e-07	6.38408e-07	0.007413	1	0
UAP1	6675	broad.mit.edu	37	1	162535877	162535877	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:162535877A>G	uc001gce.3	+	2	348	c.19A>G	c.(19-21)AAA>GAA	p.K7E		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	7					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			TAATGACCTCAAACTCACGTT	0.413			NA											12	217					0	0	0.003163	0	0
C1orf129	80133	broad.mit.edu	37	1	170964579	170964579	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:170964579C>T	uc001ghg.2	+	13	1374	c.1244C>T	c.(1243-1245)GCG>GTG	p.A415V	C1orf129_uc009wvy.2_Missense_Mutation_p.A222V|C1orf129_uc010plz.1_Missense_Mutation_p.A415V	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	415							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TACAGGAAAGCGGTGGCCCAG	0.473			NA											18	118					0	0	0.007413	0	0
LAMC2	3918	broad.mit.edu	37	1	183190027	183190027	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:183190027G>A	uc001gqa.2	+	5	885	c.571G>A	c.(571-573)GGG>AGG	p.G191R	LAMC2_uc001gpz.3_Missense_Mutation_p.G191R|LAMC2_uc010poa.1_5'UTR	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	191	Laminin EGF-like 4; first part.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						TTTCTGCTATGGGCATTCAGC	0.453			NA											14	50					0	0	0.003163	0	0
NR5A2	2494	broad.mit.edu	37	1	200017512	200017512	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:200017512A>T	uc001gvb.2	+	5	882	c.676A>T	c.(676-678)AAC>TAC	p.N226Y	NR5A2_uc001gvc.2_Missense_Mutation_p.N180Y|NR5A2_uc009wzh.2_Missense_Mutation_p.N186Y|NR5A2_uc010pph.1_Missense_Mutation_p.N154Y	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	226					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CCTACCTCTGAACCATGCTGC	0.517	Melanoma(179;1138 2773 15678 26136)		NA											13	164					0	0	0.00245	0	0
ATP2B4	493	broad.mit.edu	37	1	203693068	203693068	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:203693068G>T	uc001gzw.2	+	19	3968	c.3084G>T	c.(3082-3084)CAG>CAT	p.Q1028H	ATP2B4_uc001gzv.2_Missense_Mutation_p.Q1028H|ATP2B4_uc009xaq.2_Missense_Mutation_p.Q1028H|ATP2B4_uc001gzx.2_Missense_Mutation_p.Q59H|ATP2B4_uc009xar.2_Intron	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	1028	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GCCTGTCTCAGTGGCTGTGGT	0.532			NA											102	113					4.13896e-67	7.00889e-67	0.00361	1	0
CNTN2	6900	broad.mit.edu	37	1	205027166	205027166	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:205027166C>T	uc001hbr.2	+	3	457	c.188C>T	c.(187-189)GCC>GTC	p.A63V	CNTN2_uc001hbq.1_5'UTR|CNTN2_uc009xbi.2_5'Flank|CNTN2_uc001hbs.2_5'Flank	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	63	Ig-like C2-type 1.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GCATGCCGCGCCCGGGCCAGC	0.642	Melanoma(183;2548 2817 37099 41192)		NA											7	53					0	0	0.008291	0	0
IL24	11009	broad.mit.edu	37	1	207074989	207074989	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:207074989C>A	uc001hes.1	+	5	728	c.454C>A	c.(454-456)CAA>AAA	p.Q152K	IL24_uc001het.1_5'UTR|IL24_uc001heu.1_Missense_Mutation_p.Q153K|IL24_uc001hev.1_RNA|IL24_uc001hew.1_Intron|IL24_uc001hex.1_Intron	NM_006850	NP_006841	Q13007	IL24_HUMAN	interleukin 24 isoform 1 precursor	152					apoptosis	extracellular space	cytokine activity				0	Breast(84;0.201)					GTCACAACTGCAACCcagtgt	0.214			NA											13	73					2.61681e-11	3.49233e-11	0.00245	1	0
CR1L	1379	broad.mit.edu	37	1	207871002	207871002	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:207871002C>G	uc001hga.3	+	6	1138	c.1017C>G	c.(1015-1017)AGC>AGG	p.S339R	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	339	Sushi 5.					cytoplasm|extracellular region|membrane					0						GAGACTGGAGCCCTGCAGCCC	0.502			NA											38	292					0	0	0.00874	0	0
KCNK2	3776	broad.mit.edu	37	1	215259917	215259917	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:215259917C>A	uc001hkq.2	+	2	422	c.253C>A	c.(253-255)CAG>AAG	p.Q85K	KCNK2_uc001hko.2_Missense_Mutation_p.Q81K|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.Q70K	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	85							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	AGCATTGGAGCAGCCTCATGA	0.463			NA											46	67					8.20599e-20	1.23953e-19	0.002852	1	0
USH2A	7399	broad.mit.edu	37	1	215960159	215960159	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:215960159C>T	uc001hku.1	-	52	10627	c.10240G>A	c.(10240-10242)GGC>AGC	p.G3414S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3414	Fibronectin type-III 19.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCACACCTGCCACAATGTTCT	0.473			NA								HNSCC(13;0.011)			9	12					0	0	0.008291	0	0
USH2A	7399	broad.mit.edu	37	1	216373152	216373152	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:216373152G>A	uc001hku.1	-	17	4015	c.3628C>T	c.(3628-3630)CTG>TTG	p.L1210L	USH2A_uc001hkv.2_Silent_p.L1210L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1210	Extracellular (Potential).|Fibronectin type-III 2.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AATGGAACCAGATTCCAGATG	0.507			NA								HNSCC(13;0.011)			14	83					0	0	0.003163	0	0
TMEM63A	9725	broad.mit.edu	37	1	226054364	226054364	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:226054364C>A	uc001hpm.1	-	9	835	c.585G>T	c.(583-585)CTG>CTT	p.L195L	TMEM63A_uc010pvi.1_Silent_p.L195L	NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	195	Helical; (Potential).					integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					AGATGGTGTGCAGCCAAAGGA	0.562			NA											7	44					0.00307968	0.00324859	0.00308	1	0
PARP1	142	broad.mit.edu	37	1	226576435	226576435	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:226576435C>T	uc001hqd.3	-	5	810	c.639G>A	c.(637-639)GTG>GTA	p.V213V		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	213					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		CCACTCCATCCACCTCATCGC	0.438			NA						Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					15	282					0	0	0.00499	0	0
WNT9A	7483	broad.mit.edu	37	1	228109340	228109340	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:228109340C>G	uc001hri.2	-	4	1065	c.977G>C	c.(976-978)CGC>CCC	p.R326P		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	326					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)				GTTATGGCCGCGGCCACAGCA	0.652			NA											3	39					0	0	0.004672	0	0
WNT3A	89780	broad.mit.edu	37	1	228210557	228210557	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:228210557C>G	uc001hrq.1	+	2	339	c.261C>G	c.(259-261)AAC>AAG	p.N87K	WNT3A_uc001hrp.1_Missense_Mutation_p.N87K	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	87					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				GCCGGTGGAACTGCACCACCG	0.637			NA											7	50					0	0	0.008291	0	0
ACTN2	88	broad.mit.edu	37	1	236881170	236881170	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:236881170T>A	uc001hyf.2	+	2	343	c.139T>A	c.(139-141)TGG>AGG	p.W47R	ACTN2_uc001hyg.2_5'UTR|ACTN2_uc009xgi.1_Missense_Mutation_p.W47R	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	47	CH 1.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CTTCACTGCCTGGTGTAACTC	0.493			NA											14	38					0	0	0.003163	0	0
ACTN2	88	broad.mit.edu	37	1	236890981	236890981	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:236890981G>T	uc001hyf.2	+	6	744	c.540G>T	c.(538-540)TGG>TGT	p.W180C	ACTN2_uc001hyg.2_5'UTR|ACTN2_uc009xgi.1_Missense_Mutation_p.W180C	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	180	CH 2.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TGTGAAGCTGGAAAGATGGCC	0.527			NA											8	76					1.12685e-05	1.28561e-05	0.004482	1	0
ACTN2	88	broad.mit.edu	37	1	236898989	236898989	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:236898989G>T	uc001hyf.2	+	8	956	c.752G>T	c.(751-753)TGC>TTC	p.C251F	ACTN2_uc001hyg.2_Missense_Mutation_p.C6F|ACTN2_uc009xgi.1_Intron|ACTN2_uc010pxu.1_Intron	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	251	CH 2.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TACGTCTCTTGCTTCTACCAC	0.522			NA											4	75					0.00024832	0.000271513	0.009096	1	0
RYR2	6262	broad.mit.edu	37	1	237791358	237791358	+	Nonsense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:237791358A>T	uc001hyl.1	+	41	6538	c.6418A>T	c.(6418-6420)AAG>TAG	p.K2140*		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2140	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGAAGAAGAGAAGCTCATGAT	0.423			NA											20	63					0	0	0.002299	0	0
RYR2	6262	broad.mit.edu	37	1	237893570	237893570	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:237893570G>C	uc001hyl.1	+	77	10969	c.10849G>C	c.(10849-10851)GTC>CTC	p.V3617L	RYR2_uc010pya.1_Missense_Mutation_p.V13L	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3617					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCATCGGGCTGTCAATCTCTT	0.333			NA											6	37					0	0	0.00308	0	0
RYR2	6262	broad.mit.edu	37	1	237947412	237947412	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:237947412G>T	uc001hyl.1	+	90	12520	c.12400G>T	c.(12400-12402)GGC>TGC	p.G4134C	RYR2_uc010pya.1_Missense_Mutation_p.G549C	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4134					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCCCTTTCTGGGCCGCATCGA	0.517			NA											30	86					1.55811e-20	2.38026e-20	0.008361	1	0
RYR2	6262	broad.mit.edu	37	1	237947550	237947550	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:237947550G>T	uc001hyl.1	+	90	12658	c.12538G>T	c.(12538-12540)GGC>TGC	p.G4180C	RYR2_uc010pya.1_Missense_Mutation_p.G595C	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4180					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGTCAACGAAGGCGGAGAGAA	0.502			NA											20	136					5.35267e-07	6.38408e-07	0.007413	1	0
NLRP3	114548	broad.mit.edu	37	1	247587214	247587214	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:247587214C>T	uc001icr.2	+	5	607	c.469C>T	c.(469-471)CGT>TGT	p.R157C	NLRP3_uc001ics.2_Missense_Mutation_p.R157C|NLRP3_uc001icu.2_Missense_Mutation_p.R157C|NLRP3_uc001icw.2_Missense_Mutation_p.R157C|NLRP3_uc001icv.2_Missense_Mutation_p.R157C|NLRP3_uc010pyw.1_Missense_Mutation_p.R155C|NLRP3_uc001ict.1_Missense_Mutation_p.R155C	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	157					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CAGGAATGCCCGTCTGGGTGA	0.517			NA											3	28					0	0	0.009096	0	0
OR2T1	26696	broad.mit.edu	37	1	248569432	248569432	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:248569432G>T	uc010pzm.1	+	1	137	c.137G>T	c.(136-138)GGC>GTC	p.G46V		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	46	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCTTATATCGGCACAACTGTA	0.383			NA											8	144					3.07112e-06	3.56806e-06	0.000978	1	0
PGBD2	267002	broad.mit.edu	37	1	249211025	249211025	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:249211025G>T	uc001ifh.2	+	3	389	c.242G>T	c.(241-243)TGT>TTT	p.C81F	PGBD2_uc001ifg.2_Intron|PGBD2_uc009xhd.2_Missense_Mutation_p.C78F	NM_170725	NP_733843	Q6P3X8	PGBD2_HUMAN	hypothetical protein LOC267002 isoform a	81										ovary(1)	1	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.012)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TCAGTCCTGTGTGAGGACTCT	0.562			NA											9	43					3.07112e-06	3.56806e-06	0.000978	1	0
SEC61A2	55176	broad.mit.edu	37	10	12206397	12206397	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:12206397G>A	uc001ile.2	+	12	1522	c.1375G>A	c.(1375-1377)GAA>AAA	p.E459K	SEC61A2_uc010qbq.1_Missense_Mutation_p.E437K|SEC61A2_uc001ilf.3_Intron|SEC61A2_uc001ilh.3_Intron|SEC61A2_uc001ilg.3_Intron	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	459	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				CCAGTATTTTGAAATATTTGT	0.423			NA											17	116					0	0	0.006122	0	0
ST8SIA6	338596	broad.mit.edu	37	10	17373458	17373458	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:17373458T>C	uc001ipd.2	-	5	471	c.471A>G	c.(469-471)GAA>GAG	p.E157E	ST8SIA6_uc010qce.1_RNA	NM_001004470	NP_001004470	P61647	SIA8F_HUMAN	ST8 alpha-N-acetyl-neuraminide	157	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(1)	1						CTTTTTTGCTTTCCACCTCGT	0.383			NA											7	66					0	0	0.004482	0	0
SLC39A12	221074	broad.mit.edu	37	10	18331687	18331687	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:18331687G>T	uc001ipo.2	+	13	2274	c.2001G>T	c.(1999-2001)CTG>CTT	p.L667L	SLC39A12_uc001ipn.2_Silent_p.L630L|SLC39A12_uc001ipp.2_Silent_p.L666L|SLC39A12_uc010qck.1_Silent_p.L533L	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	667	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TGTTTCTCCTGCAAAACTTTG	0.343			NA											26	74					6.00712e-18	8.96076e-18	0.002445	1	0
GPR158	57512	broad.mit.edu	37	10	25861766	25861766	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:25861766T>G	uc001isj.2	+	7	1763	c.1703T>G	c.(1702-1704)CTC>CGC	p.L568R		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	568	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TCCGATCACCTCATCTTCAAT	0.433			NA											7	59					0	0	0.001984	0	0
PTCHD3	374308	broad.mit.edu	37	10	27700774	27700774	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:27700774T>A	uc001itu.2	-	2	1292	c.1174A>T	c.(1174-1176)ATT>TTT	p.I392F		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	392	SSD.|Helical; (Potential).				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ATGATGAGAATGTATGCCAGG	0.338			NA											16	64					0	0	0.00499	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	A	G	rs2257765		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453			NA											6	50					0	0	0.001168	0	0
C10orf72	196740	broad.mit.edu	37	10	50315879	50315879	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:50315879C>A	uc001jhf.2	-	2	246	c.217G>T	c.(217-219)GCC>TCC	p.A73S	C10orf72_uc001jhh.2_Missense_Mutation_p.A73S	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	73	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						ACCATCAAGGCCTCCTGGGAG	0.612			NA											11	34					1.61879e-10	2.11326e-10	0.001368	1	0
CHAT	1103	broad.mit.edu	37	10	50863202	50863202	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:50863202C>A	uc001jhz.2	+	12	1849	c.1696C>A	c.(1696-1698)CGC>AGC	p.R566S	CHAT_uc001jhv.1_Missense_Mutation_p.R448S|CHAT_uc001jhx.1_Missense_Mutation_p.R448S|CHAT_uc001jhy.1_Missense_Mutation_p.R448S|CHAT_uc001jia.2_Missense_Mutation_p.R448S|CHAT_uc010qgs.1_Missense_Mutation_p.R448S	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	566					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	CCAGGAGGGACGCGTGGACAA	0.587			NA											12	82					5.01169e-05	5.61081e-05	0.00499	1	0
AGAP7	653268	broad.mit.edu	37	10	51465342	51465342	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:51465342G>T	uc001jio.2	-	7	1240	c.1114C>A	c.(1114-1116)CCT>ACT	p.P372T	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	372	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TTGGCATGAGGAGAGGGGGGC	0.517			NA											19	276					4.35082e-09	5.55852e-09	0.010504	1	0
NCOA4	8031	broad.mit.edu	37	10	51584632	51584632	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:51584632G>T	uc001jis.3	+	8	934	c.731G>T	c.(730-732)TGC>TTC	p.C244F	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|NCOA4_uc009xon.2_Missense_Mutation_p.C260F|NCOA4_uc010qhd.1_Missense_Mutation_p.C260F|NCOA4_uc010qhe.1_Missense_Mutation_p.C144F|NCOA4_uc010qhf.1_Missense_Mutation_p.C78F|NCOA4_uc001jit.2_Missense_Mutation_p.C244F|NCOA4_uc009xoo.2_Missense_Mutation_p.C244F	NM_001145263	NP_001138735	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4 isoform 3	244					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			central_nervous_system(1)|kidney(1)	2						TCCAGAGCCTGCAATTTCTTC	0.368			NA	T	RET	papillary thyroid 								23	92					1.55795e-14	2.22239e-14	0.001882	1	0
DKK1	22943	broad.mit.edu	37	10	54074333	54074333	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:54074333C>A	uc001jjr.2	+	1	293	c.139C>A	c.(139-141)CCA>ACA	p.P47T	uc001jjq.1_5'Flank|uc009xox.1_5'Flank	NM_012242	NP_036374	O94907	DKK1_HUMAN	dickkopf homolog 1 precursor	47					negative regulation of peptidyl-serine phosphorylation|negative regulation of protein complex assembly|negative regulation of transcription from RNA polymerase II promoter|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization	extracellular space|plasma membrane	growth factor activity|low-density lipoprotein particle receptor binding|receptor antagonist activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						GAACCTGCCCCCACCGCTGGG	0.647			NA									OREG0020191	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	77					1.28384e-07	1.56591e-07	0.001882	1	0
PCDH15	65217	broad.mit.edu	37	10	55839091	55839091	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:55839091C>A	uc001jju.1	-	17	2486	c.2091G>T	c.(2089-2091)GGG>GGT	p.G697G	PCDH15_uc010qhq.1_Silent_p.G702G|PCDH15_uc010qhr.1_Silent_p.G697G|PCDH15_uc010qhs.1_Silent_p.G709G|PCDH15_uc010qht.1_Silent_p.G704G|PCDH15_uc010qhu.1_Silent_p.G697G|PCDH15_uc001jjv.1_Silent_p.G675G|PCDH15_uc010qhv.1_Silent_p.G697G|PCDH15_uc010qhw.1_Silent_p.G660G|PCDH15_uc010qhx.1_Silent_p.G626G|PCDH15_uc010qhy.1_Silent_p.G702G|PCDH15_uc010qhz.1_Silent_p.G697G|PCDH15_uc010qia.1_Silent_p.G675G|PCDH15_uc010qib.1_Silent_p.G675G|PCDH15_uc001jjw.2_Silent_p.G697G	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	697	Cadherin 6.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCATACTCACCCCATCTGGCC	0.433			NA								HNSCC(58;0.16)			14	88					1.3612e-06	1.59871e-06	0.003163	1	0
BICC1	80114	broad.mit.edu	37	10	60548154	60548154	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:60548154G>C	uc001jki.1	+	6	571	c.571G>C	c.(571-573)GGA>CGA	p.G191R		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	191	KH 1.				multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						ACAACCAGCAGGAGTAGAATC	0.323			NA											3	18					0	0	0.009096	0	0
BICC1	80114	broad.mit.edu	37	10	60577385	60577385	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:60577385G>T	uc001jki.1	+	19	2597	c.2597G>T	c.(2596-2598)GGC>GTC	p.G866V		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	866					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						GGAAGCAATGGCTGTAACTTA	0.463			NA											34	45					9.8876e-21	1.51479e-20	0.004878	1	0
ANK3	288	broad.mit.edu	37	10	61844360	61844360	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:61844360C>A	uc001jky.2	-	32	4266	c.4074G>T	c.(4072-4074)GAG>GAT	p.E1358D	ANK3_uc001jkw.2_Missense_Mutation_p.E492D|ANK3_uc009xpa.2_Missense_Mutation_p.E492D|ANK3_uc001jkx.2_Missense_Mutation_p.E536D|ANK3_uc010qih.1_Missense_Mutation_p.E1359D|ANK3_uc001jkz.3_Missense_Mutation_p.E1352D|ANK3_uc001jla.1_Missense_Mutation_p.E424D|ANK3_uc001jlb.1_Missense_Mutation_p.E876D|ANK3_uc001jkv.2_5'Flank	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1358					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AACAAGGTACCTCAATATCTT	0.358			NA											32	97					1.13719e-10	1.48816e-10	0.008361	1	0
UNC5B	219699	broad.mit.edu	37	10	73050706	73050706	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:73050706G>T	uc001jro.2	+	9	1579	c.1134G>T	c.(1132-1134)GCG>GCT	p.A378A	UNC5B_uc001jrp.2_Silent_p.A367A	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	378	Helical; (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CGCTGTATGCGGGGCTCGTGG	0.657			NA											46	245					1.17673e-23	1.86647e-23	0.00361	1	0
CDH23	64072	broad.mit.edu	37	10	73330613	73330613	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:73330613G>T	uc001jrx.3	+	8	1068	c.691G>T	c.(691-693)GAC>TAC	p.D231Y	CDH23_uc001jrw.3_Missense_Mutation_p.D231Y|CDH23_uc009xql.2_Missense_Mutation_p.D276Y	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	231	Cadherin 2.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AGATGTCCAGGACATGGACCC	0.527			NA									OREG0020254	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	70					4.68919e-08	5.80489e-08	0.008291	1	0
CDH23	64072	broad.mit.edu	37	10	73468968	73468968	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:73468968G>T	uc001jrx.3	+	26	3597	c.3220G>T	c.(3220-3222)GAC>TAC	p.D1074Y	CDH23_uc001jrz.2_Missense_Mutation_p.D690Y	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1074	Cadherin 10.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GGAGGCCATCGGTATGCACCA	0.612			NA											6	40					5.18039e-06	5.99923e-06	0.00308	1	0
VCL	7414	broad.mit.edu	37	10	75842254	75842254	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:75842254A>G	uc001jwd.2	+	7	920	c.826A>G	c.(826-828)AAA>GAA	p.K276E	VCL_uc009xrr.2_Missense_Mutation_p.K25E|VCL_uc010qky.1_Missense_Mutation_p.K183E|VCL_uc001jwe.2_Missense_Mutation_p.K276E|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	276	1.|N-terminal globular head.|3 X 112 AA tandem repeats.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					CATAGACTCCAAACTGAACCA	0.453			NA											6	55					0	0	0.004482	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81053264	81053264	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:81053264G>T	uc001kaf.2	+	12	1656	c.1084G>T	c.(1084-1086)GGC>TGC	p.G362C	ZMIZ1_uc001kag.2_Missense_Mutation_p.G238C|ZMIZ1_uc001kah.1_Missense_Mutation_p.G244C	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	362	Pro-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			GGGGATGAGCGGCCCTCCCAT	0.731			NA											20	88					2.37509e-13	3.31344e-13	0.010504	1	0
MAT1A	4143	broad.mit.edu	37	10	82045298	82045298	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:82045298T>A	uc001kbw.2	-	2	394	c.139A>T	c.(139-141)AAG>TAG	p.K47*		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	47					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	GGGTCTTGCTTGAGATGGGCA	0.463			NA											6	103					0	0	0.001984	0	0
NRG3	10718	broad.mit.edu	37	10	84738815	84738815	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:84738815C>T	uc001kco.2	+	8	1549	c.1522C>T	c.(1522-1524)CCA>TCA	p.P508S	NRG3_uc010qlz.1_Missense_Mutation_p.P507S|NRG3_uc001kcp.2_Missense_Mutation_p.P287S|NRG3_uc001kcq.2_Missense_Mutation_p.P158S|NRG3_uc001kcr.2_Missense_Mutation_p.P158S	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	508	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AATTGTGGGACCAGCATATCA	0.527			NA											23	30					0	0	0.005443	0	0
KIF20B	9585	broad.mit.edu	37	10	91522499	91522499	+	Silent	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:91522499A>T	uc001kgs.1	+	29	4968	c.4896A>T	c.(4894-4896)CCA>CCT	p.P1632P	KIF20B_uc001kgr.1_Silent_p.P1592P|KIF20B_uc001kgt.1_Silent_p.P843P|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1632	Interaction with PIN1.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						CTTTACAGCCAAACAAAATGG	0.413			NA											8	57					0	0	0.00308	0	0
PLCE1	51196	broad.mit.edu	37	10	95791988	95791988	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:95791988G>T	uc001kjk.2	+	2	1819	c.1185G>T	c.(1183-1185)CTG>CTT	p.L395L	PLCE1_uc010qnx.1_Silent_p.L395L	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	395					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GCCAACGTCTGTCAGAAGCCC	0.403			NA											18	46					2.52088e-20	3.84559e-20	0.00278	1	0
PIK3AP1	118788	broad.mit.edu	37	10	98388154	98388154	+	Splice_Site	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:98388154C>A	uc001kmq.2	-	9	1599	c.1471_splice	c.e9+1	p.G491_splice	PIK3AP1_uc001kmo.2_Splice_Site_p.G90_splice|PIK3AP1_uc001kmp.2_Splice_Site_p.G313_splice	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1							cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		CTATGACTTACCTTCTAAAAA	0.463			NA											59	199					2.32991e-14	3.3192e-14	0.00361	1	0
PIK3AP1	118788	broad.mit.edu	37	10	98469379	98469379	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:98469379G>A	uc001kmq.2	-	2	503	c.375C>T	c.(373-375)ACC>ACT	p.T125T		NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	125						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		CATCGTCACAGGTGAGCTCCT	0.537			NA											19	63					0	0	0.002299	0	0
CYP17A1	1586	broad.mit.edu	37	10	104593791	104593791	+	Splice_Site	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:104593791A>G	uc001kwg.2	-	4	925	c.753_splice	c.e4+1	p.K251_splice		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17						androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	TCTATCACCTACCTTGTAATT	0.219			NA											11	20					0	0	0.001855	0	0
SORCS3	22986	broad.mit.edu	37	10	106970900	106970900	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:106970900A>C	uc001kyi.1	+	17	2494	c.2267A>C	c.(2266-2268)TAT>TCT	p.Y756S	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	756	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GACAGTGACTATGGGTATGAG	0.443	NSCLC(116;1497 1690 7108 13108 14106)		NA											16	24					0	0	0.008871	0	0
SORCS3	22986	broad.mit.edu	37	10	106970934	106970934	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:106970934C>T	uc001kyi.1	+	17	2528	c.2301C>T	c.(2299-2301)GTC>GTT	p.V767V	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	767	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GCCAGTGTGTCCCAGCTTTCT	0.448	NSCLC(116;1497 1690 7108 13108 14106)		NA											6	37					0	0	0.001984	0	0
SORCS1	114815	broad.mit.edu	37	10	108431126	108431126	+	Splice_Site	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:108431126C>T	uc001kym.2	-	16	2067	c.2059_splice	c.e16-1	p.G687_splice	SORCS1_uc001kyl.2_Splice_Site_p.G687_splice|SORCS1_uc009xxs.2_Splice_Site_p.G687_splice|SORCS1_uc001kyn.1_Splice_Site_p.G687_splice|SORCS1_uc001kyo.2_Splice_Site_p.G687_splice	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a							integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		ATGCTTCCCCCTGTAAGCAGA	0.428			NA											45	103					0	0	0.00361	0	0
SHOC2	8036	broad.mit.edu	37	10	112764372	112764372	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:112764372A>G	uc001kzl.3	+	5	1330	c.981A>G	c.(979-981)TTA>TTG	p.L327L	SHOC2_uc009xxx.2_Silent_p.L327L|SHOC2_uc010qrg.1_5'UTR|SHOC2_uc001kzn.2_Silent_p.L281L	NM_007373	NP_031399	Q9UQ13	SHOC2_HUMAN	soc-2 suppressor of clear homolog	327	LRR 10.				fibroblast growth factor receptor signaling pathway|positive regulation of Ras protein signal transduction|Ras protein signal transduction	nucleus|protein phosphatase type 1 complex	protein phosphatase binding|protein phosphatase regulator activity			ovary(1)|skin(1)	2				Epithelial(162;0.000796)|all cancers(201;0.011)|BRCA - Breast invasive adenocarcinoma(275;0.126)		AGAGTCTTTTATCAAGTCTTG	0.363			NA											15	62					0	0	0.003163	0	0
GPR123	84435	broad.mit.edu	37	10	134940764	134940764	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:134940764C>T	uc001llx.3	+	6	865	c.429C>T	c.(427-429)CCC>CCT	p.P143P	GPR123_uc001llw.2_Silent_p.P863P	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	143	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		GAGGGGTCCCCTTTATCATCT	0.647			NA											5	13					0	0	0.00308	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135106116	135106116	+	Silent	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:135106116T>G	uc001lmg.1	-	8	1458	c.1101A>C	c.(1099-1101)ACA>ACC	p.T367T	TUBGCP2_uc001lmf.1_5'Flank|TUBGCP2_uc010qvc.1_Silent_p.T395T|TUBGCP2_uc009ybk.1_Silent_p.T367T|TUBGCP2_uc010qvd.1_Silent_p.T237T|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	367					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		GGCTGTCCCCTGTGTAGCTGA	0.607			NA											15	20					0	0	0.007413	0	0
CALY	50632	broad.mit.edu	37	10	135139522	135139522	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:135139522G>T	uc001lmo.2	-	5	621	c.463C>A	c.(463-465)CGC>AGC	p.R155S	uc001lmn.2_5'Flank	NM_015722	NP_056537	Q9NYX4	CALY_HUMAN	dopamine receptor D1 interacting protein	155	Cytoplasmic (Potential).				clathrin coat assembly|dopamine receptor signaling pathway|endocytosis|positive regulation of endocytosis	cytoplasmic vesicle membrane|integral to plasma membrane	clathrin light chain binding|dopamine receptor binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;6.94e-06)|OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)	Apomorphine(DB00714)|Clozapine(DB00363)|Flupenthixol(DB00875)|Trifluoperazine(DB00831)	CCGTGCTTGCGGCTCAGCGGG	0.736			NA											4	2					0.000602214	0.000649234	0.000602	1	0
RRM1	6240	broad.mit.edu	37	11	4132861	4132861	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:4132861A>C	uc001lyw.3	+	6	797	c.478A>C	c.(478-480)AAT>CAT	p.N160H	RRM1_uc009yeh.1_Missense_Mutation_p.N63H|RRM1_uc009yei.2_Missense_Mutation_p.N120H|RRM1_uc010qyc.1_Missense_Mutation_p.N63H	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	160					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	GTTGAAGATCAATGGAAAAGG	0.333	NSCLC(45;1345 1376 6258 22925)|Ovarian(34;894 1053 6175 12768)		NA											23	55					0	0	0.00632	0	0
OR52K1	390036	broad.mit.edu	37	11	4511052	4511052	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:4511052C>A	uc001lza.1	+	1	922	c.922C>A	c.(922-924)CTA>ATA	p.L308I		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGTGCTCAGTCTATTCCAGAG	0.403			NA											80	115					2.1672e-28	3.50988e-28	0.00361	1	0
OR51B2	79345	broad.mit.edu	37	11	5345399	5345399	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:5345399G>T	uc001mao.1	-	1	184	c.129C>A	c.(127-129)CTC>CTA	p.L43L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAGGTAGAGGAGCATGCCAT	0.522			NA											19	85					7.41877e-09	9.37796e-09	0.001882	1	0
UBQLN3	50613	broad.mit.edu	37	11	5530285	5530285	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:5530285C>A	uc001may.1	-	2	590	c.504G>T	c.(502-504)GTG>GTT	p.V168V	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	168										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAGCTGAGTCACAAACTCAG	0.582	Ovarian(72;684 1260 12332 41642 52180)		NA											21	47					3.8784e-16	5.62186e-16	0.001882	1	0
OR56B1	387748	broad.mit.edu	37	11	5758106	5758106	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:5758106G>T	uc001mbt.1	+	1	360	c.360G>T	c.(358-360)GAG>GAT	p.E120D	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.E120D|OR56B1_uc009yev.1_Missense_Mutation_p.E120D	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	120	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		TGGGCATGGAGTCTGGTATCC	0.438			NA											19	65					8.34094e-07	9.84999e-07	0.008871	1	0
OR56A5	390084	broad.mit.edu	37	11	5989550	5989550	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:5989550G>A	uc010qzu.1	-	1	175	c.175C>T	c.(175-177)CAC>TAC	p.H59Y		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	59	Cytoplasmic (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						AGGGGCTGGTGCAGAGAGGCT	0.602			NA											7	45					0	0	0.004482	0	0
NLRP14	338323	broad.mit.edu	37	11	7063623	7063623	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:7063623T>C	uc001mfb.1	+	4	689	c.366T>C	c.(364-366)GAT>GAC	p.D122D		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	122					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ACTTAGGTGATGGAACAGAAT	0.343			NA											41	50					0	0	0.00361	0	0
TEAD1	7003	broad.mit.edu	37	11	12883843	12883843	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:12883843G>C	uc001mkj.3	+	4	869	c.204G>C	c.(202-204)AAG>AAC	p.K68N	TEAD1_uc009ygk.2_RNA	NM_021961	NP_068780	P28347	TEAD1_HUMAN	TEA domain family member 1	83	TEA.				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0				Epithelial(150;0.00223)|BRCA - Breast invasive adenocarcinoma(625;0.236)		GGACAGGCAAGACGAGGACCA	0.443			NA											17	26					0	0	0.008871	0	0
NELL1	4745	broad.mit.edu	37	11	21592478	21592478	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:21592478C>A	uc001mqe.2	+	18	2302	c.2149C>A	c.(2149-2151)CGG>AGG	p.R717R	NELL1_uc001mqf.2_Silent_p.R670R|NELL1_uc009yid.2_Silent_p.R745R|NELL1_uc010rdo.1_Silent_p.R660R|NELL1_uc010rdp.1_Silent_p.R430R|NELL1_uc001mqh.2_Silent_p.R262R	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	717	VWFC 4.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						TCAGCAGTGTCGGTGTCTGGT	0.443			NA											29	87					1.7881e-09	2.30633e-09	0.008361	1	0
ABTB2	25841	broad.mit.edu	37	11	34218874	34218874	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:34218874T>C	uc001mvl.1	-	3	914	c.684A>G	c.(682-684)GAA>GAG	p.E228E		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	228							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				ATCCCTACCGTTCATTGTTCA	0.488			NA											22	64					0	0	0.010504	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136679	40136679	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:40136679A>G	uc001mxa.1	-	2	3128	c.1164T>C	c.(1162-1164)ACT>ACC	p.T388T	LRRC4C_uc001mxc.1_Silent_p.T384T|LRRC4C_uc001mxd.1_Silent_p.T384T|LRRC4C_uc001mxb.1_Silent_p.T384T	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	388	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TTCCATTTGGAGTAATCCAAG	0.483			NA											50	147					0	0	0.00361	0	0
CD82	3732	broad.mit.edu	37	11	44640631	44640631	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:44640631C>A	uc001myc.2	+	10	1007	c.759C>A	c.(757-759)TGC>TGA	p.C253*	CD82_uc001myd.2_Nonsense_Mutation_p.C228*	NM_002231	NP_002222	P27701	CD82_HUMAN	CD82 antigen isoform 1	253	Cytoplasmic (Potential).					integral to plasma membrane	protein binding			ovary(1)	1						TCTGCTTGTGCCGGCACGTCC	0.652			NA											7	72					2.0095e-06	2.34478e-06	0.001984	1	0
PTPRJ	5795	broad.mit.edu	37	11	48185982	48185982	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:48185982A>G	uc001ngp.3	+	24	4125	c.3770A>G	c.(3769-3771)TAC>TGC	p.Y1257C		NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	1257	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						CGTCTCATCTACCAGATAGAG	0.478			NA											23	71					0	0	0.002299	0	0
OR4A47	403253	broad.mit.edu	37	11	48511074	48511074	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:48511074G>T	uc010rhx.1	+	1	730	c.730G>T	c.(730-732)GTG>TTG	p.V244L		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCACATGACTGTGGTTGTCTT	0.418			NA											71	236					1.15074e-40	1.91849e-40	0.00361	1	0
OR4A15	81328	broad.mit.edu	37	11	55135624	55135624	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:55135624T>A	uc010rif.1	+	1	265	c.265T>A	c.(265-267)TTT>ATT	p.F89I		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	89	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCCCATGTACTTTTTTCTGGC	0.413			NA											19	153					0	0	0.002299	0	0
OR4C15	81309	broad.mit.edu	37	11	55322128	55322128	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:55322128T>G	uc010rig.1	+	1	346	c.346T>G	c.(346-348)TTG>GTG	p.L116V		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTACTTCTTCTTGGGCTTCCT	0.448			NA								HNSCC(20;0.049)			22	230					0	0	0.002299	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653101	55653101	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:55653101C>A	uc010rip.1	+	2	289	c.197C>A	c.(196-198)ACT>AAT	p.T66N	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	66						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				AACCTCAACACTGACATTTGT	0.493			NA											7	18					1.12685e-05	1.28561e-05	0.004482	1	0
OR8H3	390152	broad.mit.edu	37	11	55889871	55889871	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:55889871C>A	uc001nii.1	+	1	23	c.23C>A	c.(22-24)ACA>AAA	p.T8K		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					AGGAATGACACAAATGTGGCT	0.338			NA											18	161					6.94344e-10	8.9989e-10	0.006122	1	0
OR8H1	219469	broad.mit.edu	37	11	56058272	56058272	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:56058272G>T	uc010rje.1	-	1	267	c.267C>A	c.(265-267)AAC>AAA	p.N89K		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AGGAAATATAGTTGGAAGTCA	0.408			NA											73	351					3.41413e-29	5.54603e-29	0.00361	1	0
OR5M9	390162	broad.mit.edu	37	11	56230358	56230358	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:56230358G>T	uc010rjj.1	-	1	520	c.520C>A	c.(520-522)CAC>AAC	p.H174N		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CAATAGAAGTGATTGATTTCA	0.408			NA											32	50					6.90743e-12	9.42877e-12	0.003755	1	0
OR5M8	219484	broad.mit.edu	37	11	56257998	56257998	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:56257998C>T	uc001nix.1	-	1	849	c.849G>A	c.(847-849)ATG>ATA	p.M283I		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					TAAGGTTCAGCATAGGGATTA	0.328			NA											5	92					0	0	0.001984	0	0
OR5M11	219487	broad.mit.edu	37	11	56310500	56310500	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:56310500G>T	uc010rjl.1	-	1	234	c.234C>A	c.(232-234)ACC>ACA	p.T78T		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	78	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACATCTGCGGGGTTGCATTTG	0.423			NA											25	104					5.35356e-11	7.05726e-11	0.00278	1	0
SLC43A3	29015	broad.mit.edu	37	11	57193057	57193057	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:57193057T>C	uc001nkg.2	-	4	681	c.271A>G	c.(271-273)ATC>GTC	p.I91V	PRG2_uc001nke.2_5'Flank|SLC43A3_uc001nkh.2_Missense_Mutation_p.I91V|SLC43A3_uc010rjr.1_Missense_Mutation_p.I104V|SLC43A3_uc009yme.2_Missense_Mutation_p.I91V|SLC43A3_uc001nki.2_Missense_Mutation_p.I91V|SLC43A3_uc009ymf.1_Missense_Mutation_p.I91V|SLC43A3_uc010rjs.1_Missense_Mutation_p.I91V|SLC43A3_uc009ymg.1_Missense_Mutation_p.I104V	NM_014096	NP_054815	Q8NBI5	S43A3_HUMAN	solute carrier family 43, member 3	91	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)	1						CGGTCAAAGATGTAGCCAGTG	0.522			NA											10	84					0	0	0.000978	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958655	57958655	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:57958655T>C	uc010rka.1	+	1	693	c.693T>C	c.(691-693)GCT>GCC	p.A231A		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				TCCACTCTGCTGGAGGCCGGG	0.522			NA											12	89					0	0	0.001368	0	0
GLYATL1	92292	broad.mit.edu	37	11	58715346	58715346	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:58715346T>C	uc001nnf.2	+	5	470	c.94T>C	c.(94-96)TAT>CAT	p.Y32H	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.Y63H|GLYATL1_uc001nni.1_Missense_Mutation_p.Y32H|GLYATL1_uc001nnj.1_Missense_Mutation_p.Y32H			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	32						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	TGGCTCTGTGTATCACATCAA	0.498			NA											27	84					0	0	0.002445	0	0
OR4D11	219986	broad.mit.edu	37	11	59271426	59271426	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:59271426C>T	uc001noa.1	+	1	378	c.378C>T	c.(376-378)ATC>ATT	p.I126I		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ACATGGCCATCTCCAAGCCCC	0.517			NA											54	214					0	0	0.00361	0	0
MS4A7	58475	broad.mit.edu	37	11	60152572	60152572	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:60152572C>A	uc001npe.2	+	3	304	c.159C>A	c.(157-159)ATC>ATA	p.I53I	MS4A7_uc001npf.2_Silent_p.I53I|MS4A7_uc001npg.2_Intron|MS4A7_uc001nph.2_Intron|MS4A14_uc001npi.2_Intron|MS4A7_uc009ymx.1_Intron	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	53	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|central_nervous_system(1)	2						CTGTCCAGATCCTGTGTTGCC	0.428			NA											48	179					5.13769e-22	8.0309e-22	0.00361	1	0
DAK	26007	broad.mit.edu	37	11	61110055	61110055	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:61110055G>T	uc001nre.2	+	9	957	c.700G>T	c.(700-702)GCC>TCC	p.A234S	DDB1_uc010rlf.1_5'Flank|DAK_uc009ynm.1_Missense_Mutation_p.A164S	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	234	DhaK.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						GATGGCAACCGCCGATGAGAT	0.622			NA											17	93					6.49762e-13	8.98323e-13	0.006122	1	0
ATG2A	23130	broad.mit.edu	37	11	64665575	64665575	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:64665575C>A	uc001obx.2	-	34	4956	c.4841G>T	c.(4840-4842)GGG>GTG	p.G1614V	ATG2A_uc001obw.2_Missense_Mutation_p.G379V	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1614							protein binding			ovary(1)|central_nervous_system(1)	2						GGAGGTCTCCCCTGGGACCAC	0.622			NA									OREG0004029	type=REGULATORY REGION|Gene=BC033850|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	14	156					0.000566183	0.000612844	0.00499	1	0
SPDYC	387778	broad.mit.edu	37	11	64940262	64940262	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:64940262C>A	uc010rnz.1	+	6	624	c.624C>A	c.(622-624)GGC>GGA	p.G208G		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	208					cell cycle	nucleus	protein kinase binding				0						TTCCCCGGGGCCCTGGCCTCT	0.647			NA											26	60					3.65163e-15	5.24374e-15	0.00632	1	0
SCYL1	57410	broad.mit.edu	37	11	65303778	65303778	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:65303778G>C	uc001oea.1	+	12	1701	c.1624G>C	c.(1624-1626)GAG>CAG	p.E542Q	SCYL1_uc009yqk.2_Missense_Mutation_p.E542Q|SCYL1_uc001oeb.1_Missense_Mutation_p.E542Q|SCYL1_uc001oec.1_Missense_Mutation_p.E542Q|SCYL1_uc001oed.1_Missense_Mutation_p.E399Q|SCYL1_uc001oee.1_Missense_Mutation_p.E186Q	NM_020680	NP_065731	Q96KG9	NTKL_HUMAN	SCY1-like 1 isoform A	542	HEAT 3.				regulation of transcription, DNA-dependent|retrograde vesicle-mediated transport, Golgi to ER|transcription, DNA-dependent	cis-Golgi network|COPI vesicle coat|ER-Golgi intermediate compartment|microtubule organizing center|nucleus	ATP binding|DNA binding|protein tyrosine kinase activity			skin(1)	1						GTCTGTGTCGGAGGACCCGAC	0.587			NA											8	79					0	0	0.004482	0	0
SCYL1	57410	broad.mit.edu	37	11	65304157	65304157	+	Silent	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:65304157G>C	uc001oea.1	+	13	1829	c.1752G>C	c.(1750-1752)CTG>CTC	p.L584L	SCYL1_uc009yqk.2_Silent_p.L584L|SCYL1_uc001oeb.1_Silent_p.L584L|SCYL1_uc001oec.1_Silent_p.L584L|SCYL1_uc001oed.1_Silent_p.L441L|SCYL1_uc001oee.1_Silent_p.L228L	NM_020680	NP_065731	Q96KG9	NTKL_HUMAN	SCY1-like 1 isoform A	584					regulation of transcription, DNA-dependent|retrograde vesicle-mediated transport, Golgi to ER|transcription, DNA-dependent	cis-Golgi network|COPI vesicle coat|ER-Golgi intermediate compartment|microtubule organizing center|nucleus	ATP binding|DNA binding|protein tyrosine kinase activity			skin(1)	1						CCTCCAAGCTGATCCGTTCGC	0.617			NA											11	166					0	0	0.000978	0	0
NPAS4	266743	broad.mit.edu	37	11	66191476	66191476	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:66191476G>T	uc001ohx.1	+	7	1291	c.1115G>T	c.(1114-1116)AGC>ATC	p.S372I	NPAS4_uc010rpc.1_Missense_Mutation_p.S162I	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	372					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GCTCCCAGAAGCACCAGCTTC	0.547			NA											58	259					7.89702e-26	1.26001e-25	0.00361	1	0
DPP3	10072	broad.mit.edu	37	11	66276615	66276615	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:66276615C>T	uc001oig.1	+	18	2169	c.2107C>T	c.(2107-2109)CGT>TGT	p.R703C	DPP3_uc001oif.1_Missense_Mutation_p.R703C|DPP3_uc010rpe.1_Missense_Mutation_p.R692C|DPP3_uc001oih.1_Silent_p.S70S|BBS1_uc001oii.1_5'UTR|BBS1_uc010rpf.1_5'Flank|BBS1_uc010rpg.1_5'Flank|BBS1_uc001oij.1_5'Flank|BBS1_uc001oik.1_5'Flank|BBS1_uc001oil.1_5'Flank	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	703					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						CTTCTCTGAGCGTTTCCCAGA	0.602			NA											10	80					0	0	0.000978	0	0
RAD9A	5883	broad.mit.edu	37	11	67161065	67161065	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:67161065G>T	uc001okr.2	+	4	426	c.333G>T	c.(331-333)CAG>CAT	p.Q111H	RAD9A_uc001oks.2_5'Flank	NM_004584	NP_004575	Q99638	RAD9A_HUMAN	RAD9 homolog	111					DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint	nucleoplasm	3'-5' exonuclease activity|exodeoxyribonuclease III activity|histone deacetylase binding|protein kinase binding|SH3 domain binding				0			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			TGGTGGTCCAGCTGCATTGCA	0.627			NA						Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					16	30					1.2644e-06	1.48989e-06	0.010504	1	0
PDE2A	5138	broad.mit.edu	37	11	72291955	72291955	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:72291955G>C	uc010rrc.1	-	24	2351	c.2108C>G	c.(2107-2109)ACA>AGA	p.T703R	PDE2A_uc001oso.2_Missense_Mutation_p.T682R|PDE2A_uc010rra.1_Missense_Mutation_p.T696R|PDE2A_uc001osn.2_Missense_Mutation_p.T447R|PDE2A_uc010rrb.1_Missense_Mutation_p.T694R|PDE2A_uc010rrd.1_Missense_Mutation_p.T588R	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	703	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	AGAGTTGTTTGTGCCTCTGTG	0.532			NA											11	56					0	0	0.008291	0	0
PDE2A	5138	broad.mit.edu	37	11	72295737	72295737	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:72295737G>A	uc010rrc.1	-	18	1638	c.1395C>T	c.(1393-1395)ATC>ATT	p.I465I	PDE2A_uc001oso.2_Silent_p.I444I|PDE2A_uc010rra.1_Silent_p.I458I|PDE2A_uc001osn.2_Silent_p.I209I|PDE2A_uc010rrb.1_Silent_p.I456I|PDE2A_uc010rrd.1_Silent_p.I350I	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	465	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	CGTGTCCCGCGATGCCCTGAT	0.617			NA											4	61					0	0	0.009096	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74913994	74913994	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:74913994G>T	uc001owb.2	+	12	2199	c.1812G>T	c.(1810-1812)ATG>ATT	p.M604I	SLCO2B1_uc010rrq.1_Missense_Mutation_p.M349I|SLCO2B1_uc010rrr.1_Missense_Mutation_p.M460I|SLCO2B1_uc010rrs.1_Missense_Mutation_p.M488I|SLCO2B1_uc001owc.2_Missense_Mutation_p.M377I|SLCO2B1_uc001owd.2_Missense_Mutation_p.M582I	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	604	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	TCCAGTTCATGTTCCTGAGGA	0.413			NA											31	220					1.49673e-21	2.32945e-21	0.00623	1	0
FOLH1B	219595	broad.mit.edu	37	11	89424270	89424270	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:89424270C>T	uc001pda.2	+	11	1446	c.920C>T	c.(919-921)TCT>TTT	p.S307F		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	307					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TACAATATTTCTATGAAACAT	0.353			NA											14	86					0	0	0.001855	0	0
NAALAD2	10003	broad.mit.edu	37	11	89896172	89896172	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:89896172G>T	uc001pdf.3	+	9	1154	c.1045G>T	c.(1045-1047)GTT>TTT	p.V349F	NAALAD2_uc009yvx.2_Missense_Mutation_p.V316F|NAALAD2_uc009yvy.2_Intron|NAALAD2_uc001pde.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	349	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TTACAATGTAGTTGGAACTAT	0.269			NA											7	74					0.000274275	0.000298378	0.004482	1	0
FAT3	120114	broad.mit.edu	37	11	92616178	92616178	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:92616178C>T	uc001pdj.3	+	23	12573	c.12556C>T	c.(12556-12558)CGC>TGC	p.R4186C	FAT3_uc001pdi.3_Missense_Mutation_p.R626C	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4186	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAACTACTCCCGCAACAACAT	0.602			NA								TCGA Ovarian(4;0.039)			5	51					0	0	0.000602	0	0
MTNR1B	4544	broad.mit.edu	37	11	92714849	92714849	+	Missense_Mutation	SNP	C	C	T	rs148152472		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:92714849C>T	uc001pdk.1	+	2	563	c.460C>T	c.(460-462)CGC>TGC	p.R154C		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	154	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	AATCTACCGGCGCTGGCACAC	0.592			NA											16	50					0	0	0.010504	0	0
CNTN5	53942	broad.mit.edu	37	11	99715985	99715985	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:99715985C>T	uc001pga.2	+	6	907	c.568C>T	c.(568-570)CAG>TAG	p.Q190*	CNTN5_uc009ywv.1_Nonsense_Mutation_p.Q190*|CNTN5_uc001pfz.2_Nonsense_Mutation_p.Q190*|CNTN5_uc001pgb.2_Nonsense_Mutation_p.Q116*	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	190	Ig-like C2-type 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGCTACACTGCAGTTTGCCTG	0.328			NA											17	153					0	0	0.008871	0	0
CNTN5	53942	broad.mit.edu	37	11	100141943	100141943	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:100141943C>G	uc001pga.2	+	18	2623	c.2284C>G	c.(2284-2286)CCA>GCA	p.P762A	CNTN5_uc001pfz.2_Missense_Mutation_p.P762A|CNTN5_uc001pgb.2_Missense_Mutation_p.P688A|CNTN5_uc010ruk.1_Missense_Mutation_p.P33A	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	762	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TCCAAGCACCCCATCTCGAAT	0.458			NA											10	26					0	0	0.008291	0	0
C11orf87	399947	broad.mit.edu	37	11	109294562	109294562	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:109294562T>C	uc001pkn.2	+	2	577	c.203T>C	c.(202-204)GTT>GCT	p.V68A	C11orf87_uc010rwb.1_5'Flank	NM_207645	NP_997528	Q6NUJ2	CK087_HUMAN	hypothetical protein LOC399947 precursor	68	Helical; (Potential).					integral to membrane				ovary(2)	2						ATTGTCCTGGTTACCCTCATC	0.592			NA											8	58					0	0	0.004482	0	0
LAYN	143903	broad.mit.edu	37	11	111420459	111420460	+	Missense_Mutation	DNP	GG	GG	AT	rs143228822		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:111420459_111420460GG>AT	uc001plr.1	+	4	860_861	c.524_525GG>AT	c.(523-525)CGG>CAT	p.R175H	LAYN_uc001plp.1_Missense_Mutation_p.R167H|LAYN_uc001plq.1_Missense_Mutation_p.R175H|LAYN_uc001pls.1_Missense_Mutation_p.R167H|LAYN_uc010rwg.1_Intron|LAYN_uc010rwh.1_Missense_Mutation_p.R23H	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	175	C-type lectin.|Extracellular (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		AATGATGACCGGTGCAACATGA	0.505	Ovarian(17;551 586 12136 22082 22900)		NA											11	55					0	0	0.004672	0	0
ALG9	79796	broad.mit.edu	37	11	111680426	111680426	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:111680426A>G	uc001pmb.2	-	15	1752	c.1653T>C	c.(1651-1653)TAT>TAC	p.Y551Y	ALG9_uc001ply.2_Silent_p.Y380Y|ALG9_uc001plz.2_Silent_p.Y387Y|ALG9_uc010rwm.1_Silent_p.Y558Y|ALG9_uc010rwn.1_Silent_p.Y505Y|ALG9_uc010rwo.1_Silent_p.Y379Y	NM_001077690	NP_001071158	Q9H6U8	ALG9_HUMAN	asparagine-linked glycosylation 9 protein	551	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			large_intestine(1)|ovary(1)	2		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.81e-07)|BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|all cancers(92;1.3e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0587)		TATTGGATGAATATTTTGGCT	0.398			NA											13	56					0	0	0.00245	0	0
DRD2	1813	broad.mit.edu	37	11	113295192	113295192	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:113295192C>T	uc001pnz.2	-	1	503	c.182G>A	c.(181-183)CGC>CAC	p.R61H	DRD2_uc010rwv.1_Missense_Mutation_p.R61H|DRD2_uc001poa.3_Missense_Mutation_p.R61H|DRD2_uc001pob.3_Missense_Mutation_p.R61H|DRD2_uc009yyr.1_Missense_Mutation_p.R61H	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	61	Cytoplasmic (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	CGCCTTCTCGCGGGACACAGC	0.607			NA											7	41					0	0	0.006214	0	0
DSCAML1	57453	broad.mit.edu	37	11	117299216	117299216	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:117299216G>T	uc001prh.1	-	33	6172	c.6170C>A	c.(6169-6171)ACC>AAC	p.T2057N		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1997	Cytoplasmic (Potential).|Pro-rich.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GCTGGGGGCGGTGGGTGGCTC	0.736			NA											12	5					2.27111e-07	2.75139e-07	0.001368	1	0
C2CD2L	9854	broad.mit.edu	37	11	118983090	118983090	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:118983090A>T	uc001pvo.2	+	8	1431	c.1072A>T	c.(1072-1074)AGC>TGC	p.S358C	C2CD2L_uc001pvn.2_Missense_Mutation_p.S358C	NM_014807	NP_055622	O14523	C2C2L_HUMAN	transmembrane protein 24	358						integral to membrane					0						GAGGAGCAGCAGCTGTGGAGA	0.622			NA											5	69					0	0	0.001168	0	0
TRIM29	23650	broad.mit.edu	37	11	119998088	119998088	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:119998088G>T	uc001pwz.2	-	3	1214	c.1090C>A	c.(1090-1092)CGG>AGG	p.R364R	TRIM29_uc010rzi.1_Silent_p.R103R|TRIM29_uc010rzj.1_Silent_p.R97R|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	364					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		AGCTGCTCCCGGGTCTGCTTG	0.542			NA											29	102					1.13719e-10	1.48816e-10	0.008361	1	0
TMEM136	219902	broad.mit.edu	37	11	120201131	120201131	+	Silent	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:120201131A>C	uc001pxh.1	+	3	708	c.645A>C	c.(643-645)GCA>GCC	p.A215A	TMEM136_uc001pxg.2_Silent_p.A118A|TMEM136_uc010rzm.1_Silent_p.A96A|TMEM136_uc001pxj.2_Silent_p.A237A|TMEM136_uc009zas.1_Silent_p.A101A|TMEM136_uc001pxi.1_Silent_p.A101A	NM_174926	NP_777586	Q6ZRR5	TM136_HUMAN	transmembrane protein 136	215						integral to membrane				ovary(1)	1		Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Hepatocellular(160;0.206)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.07e-06)		GGCGCTTTGCATGGAGGAAGA	0.512			NA											6	25					0	0	0.001168	0	0
SORL1	6653	broad.mit.edu	37	11	121477578	121477578	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:121477578A>T	uc001pxx.2	+	36	5053	c.4973A>T	c.(4972-4974)CAG>CTG	p.Q1658L	SORL1_uc010rzp.1_Missense_Mutation_p.Q504L|SORL1_uc010rzq.1_Missense_Mutation_p.Q273L	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1658	Extracellular (Potential).|Fibronectin type-III 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CGAAATCTCCAGCTGTCACTC	0.512			NA											19	158					0	0	0.007413	0	0
OR6T1	219874	broad.mit.edu	37	11	123813850	123813850	+	Silent	SNP	A	A	T	rs76651236	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:123813850A>T	uc010sab.1	-	1	696	c.696T>A	c.(694-696)GCT>GCA	p.A232A		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TCCTTCGCTCAGCAGCTGTAG	0.512			NA											18	92					0	0	0.008871	0	0
OR10G9	219870	broad.mit.edu	37	11	123894150	123894150	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:123894150C>A	uc010sad.1	+	1	431	c.431C>A	c.(430-432)GCC>GAC	p.A144D		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GCCCTCCTGGCCACCAGCACT	0.527			NA											37	192					5.04308e-16	7.30026e-16	0.00623	1	0
ROBO4	54538	broad.mit.edu	37	11	124765005	124765005	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:124765005T>C	uc001qbg.2	-	7	1261	c.1121A>G	c.(1120-1122)AAC>AGC	p.N374S	ROBO4_uc010sas.1_Missense_Mutation_p.N229S|ROBO4_uc001qbh.2_Missense_Mutation_p.N264S|ROBO4_uc001qbi.2_5'Flank|ROBO4_uc010sat.1_5'UTR	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	374	Fibronectin type-III 2.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GCCATTGTGGTTTTCAGCAGG	0.557			NA											5	60					0	0	0.001984	0	0
NTM	50863	broad.mit.edu	37	11	132180009	132180009	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:132180009C>T	uc001qgp.2	+	5	1329	c.665C>T	c.(664-666)CCA>CTA	p.P222L	NTM_uc001qgm.2_Missense_Mutation_p.P222L|NTM_uc010sch.1_Missense_Mutation_p.P213L|NTM_uc010sci.1_Missense_Mutation_p.P222L|NTM_uc010scj.1_Missense_Mutation_p.P181L|NTM_uc001qgo.2_Missense_Mutation_p.P222L|NTM_uc001qgq.2_Missense_Mutation_p.P222L|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	222	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						TTTGCAGATCCACCATACATT	0.388			NA											59	170					0	0	0.00361	0	0
C12orf4	57102	broad.mit.edu	37	12	4645226	4645226	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:4645226T>C	uc001qms.2	-	2	223	c.135A>G	c.(133-135)GGA>GGG	p.G45G	C12orf4_uc001qmt.2_Silent_p.G45G|RAD51AP1_uc001qmw.2_5'Flank|RAD51AP1_uc001qmu.2_5'Flank|RAD51AP1_uc001qmv.2_5'Flank|RAD51AP1_uc010sep.1_5'Flank|RAD51AP1_uc010seq.1_5'Flank	NM_020374	NP_065107	Q9NQ89	CL004_HUMAN	hypothetical protein LOC57102	45											0			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)	BRCA - Breast invasive adenocarcinoma(232;0.0281)		GCATCAGACGTCCATGCAAAT	0.363			NA											9	166					0	0	0.006214	0	0
NTF3	4908	broad.mit.edu	37	12	5603588	5603588	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:5603588C>A	uc001qnl.3	+	1	291	c.208C>A	c.(208-210)CGA>AGA	p.R70R	NTF3_uc001qnk.3_Silent_p.R83R	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	70					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						TGAGGCTCCCCGAGAGCCGGA	0.557	GBM(194;1104 2182 8339 9578 18493)		NA											13	120					4.7546e-09	6.05285e-09	0.004007	1	0
VWF	7450	broad.mit.edu	37	12	6167018	6167018	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:6167018T>G	uc001qnn.1	-	14	1976	c.1726A>C	c.(1726-1728)ATG>CTG	p.M576L	VWF_uc010set.1_Missense_Mutation_p.M576L	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	576	VWFD 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CACATACTCATGCGCGGGTTG	0.662			NA											43	285					0	0	0.00361	0	0
MLF2	8079	broad.mit.edu	37	12	6861144	6861144	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:6861144T>A	uc010sfi.1	-	3	190	c.127A>T	c.(127-129)ATC>TTC	p.I43F	MLF2_uc001qqp.2_Missense_Mutation_p.I43F|MLF2_uc009zey.1_Missense_Mutation_p.I43F	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	43					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						CCATCTGTGATGCTGAGGAAG	0.537			NA									OREG0021633	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	212					0	0	0.001882	0	0
LEPREL2	10536	broad.mit.edu	37	12	6939836	6939836	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:6939836G>T	uc001qra.1	+	6	921	c.887G>T	c.(886-888)CGC>CTC	p.R296L	LEPREL2_uc001qqz.1_Missense_Mutation_p.R103L|LEPREL2_uc001qrb.1_Missense_Mutation_p.R103L	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	296					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGCCGGCAACGCTGTGTGGGG	0.622			NA											8	30					0.000157383	0.000173315	0.00308	1	0
CD163L1	283316	broad.mit.edu	37	12	7586276	7586276	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:7586276C>G	uc001qsy.2	-	3	165	c.139G>C	c.(139-141)GAG>CAG	p.E47Q	CD163L1_uc010sge.1_Missense_Mutation_p.E47Q	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	47	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGCCTCAACTCCAAATCTGTT	0.458			NA											21	137					0	0	0.005443	0	0
CD163	9332	broad.mit.edu	37	12	7654058	7654059	+	Splice_Site	DNP	CC	CC	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:7654058_7654059CC>AA	uc001qsz.3	-	3	262	c.134_splice	c.e3-1	p.G45_splice	CD163_uc001qta.3_Splice_Site_p.G45_splice|CD163_uc009zfw.2_Splice_Site_p.G45_splice	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a						acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GTCTGTTCCTCCTGCAACAATG	0.416			NA											19	161					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	12	8048236	8048236	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:8048236C>A	uc001qtp.1	+	2	224	c.144C>A	c.(142-144)ACC>ACA	p.T48T						RecName: Full=Putative homeobox protein NANOG2;												NA						TCTCTTCCACCCAGCTGTGTG	0.468			NA											20	137					1.15919e-05	1.3211e-05	0.008871	1	0
CLEC4A	50856	broad.mit.edu	37	12	8289466	8289466	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:8289466G>T	uc001qtz.1	+	5	780	c.533G>T	c.(532-534)TGG>TTG	p.W178L	CLEC4A_uc009zga.1_Missense_Mutation_p.W139L|CLEC4A_uc001qub.1_Missense_Mutation_p.W145L|CLEC4A_uc001quc.1_Missense_Mutation_p.W106L|CLEC4A_uc009zgb.1_Missense_Mutation_p.M94I|uc010sgi.1_5'Flank	NM_016184	NP_057268	Q9UMR7	CLC4A_HUMAN	C-type lectin domain family 4, member A isoform	178	Extracellular (Potential).|C-type lectin.				cell adhesion|cell surface receptor linked signaling pathway|innate immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0				Kidney(36;0.0915)		CATTGGCAATGGGTTGATCAG	0.443			NA											18	88					1.50039e-11	2.01738e-11	0.001882	1	0
MFAP5	8076	broad.mit.edu	37	12	8813495	8813495	+	Splice_Site	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:8813495C>A	uc001qut.1	-	3	272	c.59_splice	c.e3-1	p.D20_splice	MFAP5_uc001qus.2_Splice_Site_p.D20_splice|MFAP5_uc009zge.1_Splice_Site_p.D20_splice	NM_003480	NP_003471	Q13361	MFAP5_HUMAN	microfibrillar associated protein 5 precursor							microfibril	extracellular matrix structural constituent			breast(1)	1	Lung SC(5;0.184)					GGTATCCAGTCTATAGCAAAG	0.433			NA											11	36					1.49906e-05	1.70305e-05	0.00245	1	0
TAS2R14	50840	broad.mit.edu	37	12	11091741	11091741	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:11091741T>A	uc010shi.1	-	1	66	c.66A>T	c.(64-66)TTA>TTT	p.L22F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_023922	NP_076411	Q9NYV8	T2R14_HUMAN	taste receptor, type 2, member 14	22	Helical; Name=1; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste		bitter taste receptor activity				0						AACTATTTCCTAAATTTCCAA	0.393			NA											9	61					0	0	0.006214	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21015459	21015459	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:21015459T>G	uc001rek.2	+	6	721	c.595T>G	c.(595-597)TTT>GTT	p.F199V	SLCO1B3_uc001rel.2_Missense_Mutation_p.F199V|SLCO1B3_uc010sil.1_Missense_Mutation_p.F199V|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.F24V	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	199	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CATTGATGATTTTGCAAAAGA	0.378			NA											29	64					0	0	0.00632	0	0
OVCH1	341350	broad.mit.edu	37	12	29648297	29648297	+	Silent	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:29648297A>T	uc001rix.1	-	4	375	c.375T>A	c.(373-375)ATT>ATA	p.I125I		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	125	Peptidase S1 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					CAGGATGGGTAATAATTTTTG	0.383			NA											99	71					0	0	0.00361	0	0
TMTC1	83857	broad.mit.edu	37	12	29709830	29709830	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:29709830G>T	uc001rjb.2	-	10	1786	c.1312C>A	c.(1312-1314)CAG>AAG	p.Q438K	TMTC1_uc001riz.2_Missense_Mutation_p.Q195K|TMTC1_uc001rja.2_Missense_Mutation_p.Q282K|TMTC1_uc001rjc.1_Missense_Mutation_p.Q500K	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	546	TPR 2.					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					CGGTTATGCTGTGGATGGAGC	0.507			NA											26	79					2.65835e-16	3.87421e-16	0.007291	1	0
SLC2A13	114134	broad.mit.edu	37	12	40158324	40158324	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:40158324C>A	uc010skm.1	-	9	1709	c.1658G>T	c.(1657-1659)TGG>TTG	p.W553L	C12orf40_uc009zjv.1_Intron	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	553	Helical; Name=11; (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				ATTGAAAATCCAGTTTATTCC	0.338			NA								HNSCC(50;0.14)			36	91					3.21399e-22	5.03121e-22	0.004878	1	0
LRRK2	120892	broad.mit.edu	37	12	40651089	40651089	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:40651089T>C	uc001rmg.3	+	12	1449	c.1328T>C	c.(1327-1329)CTG>CCG	p.L443P	LRRK2_uc001rmh.1_Missense_Mutation_p.L65P	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	443					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GGAATACACCTGAATGTTTTG	0.284			NA											5	62					0	0	0.001168	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967276	41967276	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:41967276C>G	uc010skn.1	+	10	2166	c.2098C>G	c.(2098-2100)CGG>GGG	p.R700G	PDZRN4_uc001rmq.3_Missense_Mutation_p.R641G|PDZRN4_uc009zjz.2_Missense_Mutation_p.R639G|PDZRN4_uc001rmr.2_Missense_Mutation_p.R526G	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	899							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				CGACGGGACACGGTACATCAC	0.517			NA											27	131					0	0	0.00632	0	0
TMEM117	84216	broad.mit.edu	37	12	44605102	44605102	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:44605102C>A	uc001rod.2	+	5	606	c.540C>A	c.(538-540)CCC>CCA	p.P180P	TMEM117_uc001roe.2_Silent_p.P76P|TMEM117_uc009zkc.2_Silent_p.P180P	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	180						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		AGGACAAACCCTATCCTGACT	0.358			NA											14	60					3.45872e-05	3.90465e-05	0.004007	1	0
FAM113B	91523	broad.mit.edu	37	12	47629393	47629393	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:47629393C>A	uc001rpn.2	+	4	1278	c.547C>A	c.(547-549)CGG>AGG	p.R183R	FAM113B_uc010slj.1_Silent_p.R63R|FAM113B_uc001rpq.2_Silent_p.R183R	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	183							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CAAGCTCCGGCGGCAGAAGGC	0.587			NA											23	23					2.89027e-11	3.84299e-11	0.002299	1	0
TFCP2	7024	broad.mit.edu	37	12	51500371	51500371	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:51500371T>A	uc001rxw.2	-	8	1313	c.854A>T	c.(853-855)TAT>TTT	p.Y285F	TFCP2_uc001rxv.1_Missense_Mutation_p.Y285F|TFCP2_uc009zlx.1_Missense_Mutation_p.Y234F|TFCP2_uc001rxx.2_Missense_Mutation_p.Y285F|TFCP2_uc009zly.1_Missense_Mutation_p.Y187F	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	285	DNA-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTTATTGACATACGTGATCTC	0.403			NA											11	38					0	0	0.001368	0	0
KRT72	140807	broad.mit.edu	37	12	52985302	52985302	+	Silent	SNP	G	G	A	rs112771714	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:52985302G>A	uc001sar.2	-	5	995	c.909C>T	c.(907-909)TAC>TAT	p.Y303Y	KRT72_uc001saq.2_Silent_p.Y303Y|KRT72_uc010sns.1_Silent_p.Y303Y|KRT72_uc010snt.1_Silent_p.Y115Y	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	303	Coil 2.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		CAATCTCCTCGTACTGGGCAC	0.587			NA											9	79					0	0	0.006214	0	0
LRP1	4035	broad.mit.edu	37	12	57572789	57572789	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:57572789A>T	uc001snd.2	+	28	5189	c.4723A>T	c.(4723-4725)AAC>TAC	p.N1575Y		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1575	EGF-like 7.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCACAAGGACAACACCACCTG	0.642			NA											80	89					0	0	0.00361	0	0
OS9	10956	broad.mit.edu	37	12	58089584	58089584	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:58089584G>A	uc001spj.2	+	3	420	c.361G>A	c.(361-363)GAA>AAA	p.E121K	OS9_uc010srx.1_Missense_Mutation_p.E121K|OS9_uc001spk.2_Missense_Mutation_p.E121K|OS9_uc001spl.2_Missense_Mutation_p.E121K|OS9_uc001spm.2_Missense_Mutation_p.E121K|OS9_uc001spn.2_Missense_Mutation_p.E121K|OS9_uc010sry.1_Missense_Mutation_p.E121K|OS9_uc010srz.1_Missense_Mutation_p.E62K	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	121	PRKCSH.				ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GTGGACATATGAATTCTGTTA	0.433			NA											37	134					0	0	0.009718	0	0
SRGAP1	57522	broad.mit.edu	37	12	64456851	64456851	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:64456851T>C	uc010ssp.1	+	7	1012	c.956T>C	c.(955-957)ATG>ACG	p.M319T	SRGAP1_uc001srt.2_Missense_Mutation_p.M319T|SRGAP1_uc001srv.2_Missense_Mutation_p.M279T	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	319					axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		CAGAGATTCATGGAGATGTAC	0.413			NA											64	62					0	0	0.00361	0	0
NUP107	57122	broad.mit.edu	37	12	69124946	69124946	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:69124946T>C	uc001suf.2	+	21	1906	c.1791T>C	c.(1789-1791)CCT>CCC	p.P597P	NUP107_uc001sug.2_Intron|NUP107_uc010stj.1_Silent_p.P568P	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	597					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			GTCATTTGCCTCAAGACCTAG	0.328			NA											3	73					0	0	0.009096	0	0
BEST3	144453	broad.mit.edu	37	12	70049505	70049505	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:70049505G>A	uc001svg.2	-	10	1416	c.1189C>T	c.(1189-1191)CGG>TGG	p.R397W	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.R184W|BEST3_uc010stm.1_Missense_Mutation_p.R291W	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	397	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CTCAGGAACCGCTTGACTCTT	0.542			NA											96	97					0	0	0.00361	0	0
SCYL2	55681	broad.mit.edu	37	12	100676756	100676756	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:100676756C>A	uc001thn.2	+	2	58	c.8C>A	c.(7-9)TCC>TAC	p.S3Y	SCYL2_uc009ztw.1_Intron|SCYL2_uc001thm.1_Missense_Mutation_p.S3Y	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	3					endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						GCCATGGAGTCCATGCTTAAT	0.353			NA											6	65					8.12818e-05	9.0248e-05	0.001984	1	0
ANO4	121601	broad.mit.edu	37	12	101437376	101437376	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:101437376C>A	uc010svm.1	+	13	1786	c.1214C>A	c.(1213-1215)CCA>CAA	p.P405Q	ANO4_uc001thw.2_Missense_Mutation_p.P370Q|ANO4_uc001thx.2_Missense_Mutation_p.P405Q	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	405	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAATACTGTCCATTCATGAGG	0.393			NA								HNSCC(74;0.22)			18	79					1.55795e-14	2.22239e-14	0.001882	1	0
SLC5A8	160728	broad.mit.edu	37	12	101581208	101581208	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:101581208C>A	uc001thz.3	-	7	1309	c.919G>T	c.(919-921)GAC>TAC	p.D307Y		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	307	Extracellular (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						GGATCACAGTCATGGTACCTG	0.428	GBM(60;420 1056 13605 22380 47675)		NA											32	39					2.87052e-16	4.17213e-16	0.005524	1	0
SLC5A8	160728	broad.mit.edu	37	12	101584289	101584289	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:101584289C>G	uc001thz.3	-	6	1180	c.790G>C	c.(790-792)GTG>CTG	p.V264L		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	264	Cytoplasmic (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						TATCTCTGCACCTGGGATTGG	0.393	GBM(60;420 1056 13605 22380 47675)		NA											13	128					0	0	0.001855	0	0
STAB2	55576	broad.mit.edu	37	12	104125389	104125389	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:104125389C>T	uc001tjw.2	+	50	5445	c.5259C>T	c.(5257-5259)TAC>TAT	p.Y1753Y	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1753	Extracellular (Potential).|FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ACAATGGCTACATCAAATTTA	0.289			NA											32	64					0	0	0.005524	0	0
HVCN1	84329	broad.mit.edu	37	12	111088015	111088015	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:111088015C>T	uc001trs.1	-	7	879	c.714G>A	c.(712-714)TTG>TTA	p.L238L	HVCN1_uc001trq.1_Silent_p.L238L|HVCN1_uc001trt.1_Silent_p.L238L|HVCN1_uc010syd.1_Silent_p.L218L	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	238	Cytoplasmic (Potential).|Potential.				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						TCTTGGCGGCCAATTGTACAT	0.353			NA											49	63					0	0	0.00361	0	0
MED13L	23389	broad.mit.edu	37	12	116420924	116420924	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:116420924C>A	uc001tvw.2	-	21	5008	c.4953G>T	c.(4951-4953)GAG>GAT	p.E1651D		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1651					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		TAACATACCTCTCTTGTCCAT	0.498			NA											63	48					1.31726e-23	2.08631e-23	0.00361	1	0
LRRC43	254050	broad.mit.edu	37	12	122669147	122669147	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:122669147G>A	uc009zxm.2	+	2	257	c.232G>A	c.(232-234)GAG>AAG	p.E78K	LRRC43_uc001ubw.3_5'UTR|LRRC43_uc009zxl.1_RNA	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	78											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		GAGCCCCGGAGAGGAGACGGT	0.597			NA											4	31					0	0	0.000602	0	0
AACS	65985	broad.mit.edu	37	12	125618604	125618604	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:125618604C>T	uc001uhc.2	+	15	1811	c.1605C>T	c.(1603-1605)GTC>GTT	p.V535V	AACS_uc001uhd.2_Silent_p.V535V|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_Silent_p.V133V	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	535					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		GGGGCATCGTCATGCTTGGCC	0.597			NA											5	23					0	0	0.001168	0	0
TMEM132D	121256	broad.mit.edu	37	12	129822241	129822241	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:129822241A>T	uc009zyl.1	-	4	1565	c.1237T>A	c.(1237-1239)TTG>ATG	p.L413M		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	413	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GACACTCCCAAGTCAGACGTG	0.572			NA											24	257					0	0	0.00333	0	0
TMEM132D	121256	broad.mit.edu	37	12	130185164	130185164	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:130185164G>A	uc009zyl.1	-	2	487	c.159C>T	c.(157-159)ATC>ATT	p.I53I		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	53	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCGCGTTGTTGATGTGGTAGG	0.547			NA											13	68					0	0	0.00245	0	0
MTMR6	9107	broad.mit.edu	37	13	25840328	25840328	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:25840328T>C	uc001uqf.3	-	4	720	c.401A>G	c.(400-402)TAT>TGT	p.Y134C	MTMR6_uc001uqe.1_Missense_Mutation_p.Y134C	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	134	Myotubularin phosphatase.					cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		CATCCTCTTATATTCCTCAGC	0.408			NA											15	24					0	0	0.00245	0	0
ATP8A2	51761	broad.mit.edu	37	13	26535737	26535737	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:26535737C>T	uc001uqk.2	+	34	3350	c.3208C>T	c.(3208-3210)CAC>TAC	p.H1070Y	ATP8A2_uc010tdi.1_Missense_Mutation_p.H1005Y|ATP8A2_uc010tdj.1_RNA	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	1030	Helical; (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		GAGCTCCGCACACTTCTGGTT	0.433			NA											35	98					0	0	0.004878	0	0
FRY	10129	broad.mit.edu	37	13	32836597	32836597	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:32836597T>A	uc001utx.2	+	53	8260	c.7764T>A	c.(7762-7764)ATT>ATA	p.I2588I	FRY_uc010tdw.1_RNA|FRY_uc001uty.2_Silent_p.I143I|FRY_uc001utz.2_Silent_p.I113I|FRY_uc010tdx.1_5'Flank	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2588					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ATCTGCAGATTTCTGAGGGTT	0.393			NA											29	79					0	0	0.002836	0	0
FAM124A	220108	broad.mit.edu	37	13	51854668	51854668	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:51854668C>T	uc001vfg.1	+	4	1048	c.917C>T	c.(916-918)CCG>CTG	p.P306L	FAM124A_uc001vff.1_Missense_Mutation_p.P342L	NM_145019	NP_659456	Q86V42	F124A_HUMAN	hypothetical protein LOC220108	306										central_nervous_system(1)	1		Acute lymphoblastic leukemia(7;0.000334)|Breast(56;0.00156)|Prostate(109;0.00538)|Lung NSC(96;0.0216)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;4.25e-07)		ACTCCTTTGCCGAGCACTGCT	0.597			NA											7	36					0	0	0.001984	0	0
PCDH17	27253	broad.mit.edu	37	13	58207106	58207106	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:58207106G>T	uc001vhq.1	+	1	1318	c.426G>T	c.(424-426)TCG>TCT	p.S142S	PCDH17_uc010aec.1_Silent_p.S142S	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	142	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TGGACATCTCGGAGAACGCTG	0.617	Melanoma(72;952 1291 1619 12849 33676)		NA											17	17					7.07596e-05	7.88904e-05	0.006122	1	0
KLF12	11278	broad.mit.edu	37	13	74289627	74289627	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:74289627C>T	uc001vjf.2	-	7	1127	c.905G>A	c.(904-906)CGC>CAC	p.R302H	KLF12_uc010aeq.2_Missense_Mutation_p.R302H	NM_007249	NP_009180	Q9Y4X4	KLF12_HUMAN	Kruppel-like factor 12	302					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Prostate(6;0.00217)|Breast(118;0.0838)		GBM - Glioblastoma multiforme(99;0.00677)		CCGTCTCTGGCGTCTTGTGCT	0.458			NA											17	89					0	0	0.007413	0	0
COL4A1	1282	broad.mit.edu	37	13	110831280	110831280	+	Silent	SNP	C	C	A	rs144401828	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:110831280C>A	uc001vqw.3	-	31	2570	c.2448G>T	c.(2446-2448)CCG>CCT	p.P816P	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	816	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CTGACAACCCCGGTGGTCCCT	0.582			NA											5	15					2.7689e-08	3.46353e-08	0.001984	1	0
COL4A2	1284	broad.mit.edu	37	13	111082234	111082234	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:111082234G>T	uc001vqx.2	+	8	769	c.480G>T	c.(478-480)GGG>GGT	p.G160G		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	160					angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CTAATTAGGGGCCCCAAGGAC	0.433			NA											17	38					8.28177e-16	1.19404e-15	0.007413	1	0
F10	2159	broad.mit.edu	37	13	113803629	113803629	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr13:113803629C>T	uc001vsx.2	+	8	1322	c.1265C>T	c.(1264-1266)CCG>CTG	p.P422L	F10_uc001vsy.2_3'UTR|F10_uc001vsz.2_3'UTR	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	422	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCGGGGGCCCGCACGTCACC	0.612			NA											43	85					0	0	0.003214	0	0
OR4K5	79317	broad.mit.edu	37	14	20389623	20389623	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:20389623T>G	uc010tkw.1	+	1	858	c.858T>G	c.(856-858)ATT>ATG	p.I286M		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ACCCCATTATTTATACACTAA	0.403			NA											8	125					0	0	0.006214	0	0
OR4K5	79317	broad.mit.edu	37	14	20389719	20389719	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:20389719G>T	uc010tkw.1	+	1	954	c.954G>T	c.(952-954)GTG>GTT	p.V318V		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CACTAGTAGTGAGAACTTCCT	0.353			NA											6	73					0.00116845	0.00124843	0.001168	1	0
RNASE12	493901	broad.mit.edu	37	14	21058517	21058517	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:21058517G>C	uc001vxt.2	-	1	466	c.366C>G	c.(364-366)CAC>CAG	p.H122Q	RNASE11_uc010ahv.2_5'Flank|RNASE11_uc010ahx.2_5'Flank|RNASE11_uc010ahw.2_5'Flank|RNASE11_uc001vxs.2_5'Flank|uc001vxu.1_5'Flank	NM_001024822	NP_001019993	Q5GAN4	RNS12_HUMAN	ribonuclease, RNase A family, 12 (non-active)	122						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(95;0.00238)		Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.013)		TGGGGGAATAGTGGTACCTGC	0.453			NA											8	104					0	0	0.008291	0	0
SLC7A7	9056	broad.mit.edu	37	14	23249156	23249156	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:23249156C>A	uc001wgr.3	-	3	742	c.604G>T	c.(604-606)GGC>TGC	p.G202C	SLC7A7_uc001wgs.3_Missense_Mutation_p.G202C|SLC7A7_uc001wgt.3_Missense_Mutation_p.G202C|SLC7A7_uc001wgu.3_Missense_Mutation_p.G202C|SLC7A7_uc001wgv.3_Missense_Mutation_p.G202C	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	202	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		CTAACAATGCCTGCAACGATG	0.284			NA											11	111					0.00185496	0.0019741	0.001855	1	0
AP1G2	8906	broad.mit.edu	37	14	24035553	24035553	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:24035553C>A	uc001wkl.2	-	4	742	c.405G>T	c.(403-405)ATG>ATT	p.M135I	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Missense_Mutation_p.M6I|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_RNA|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Missense_Mutation_p.M135I|AP1G2_uc010aks.2_Missense_Mutation_p.M6I|AP1G2_uc010akt.2_Missense_Mutation_p.M6I|AP1G2_uc010tnq.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	135					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		GGTCTCGGCACATCTCAGCAG	0.622			NA											6	113					3.59834e-05	4.03688e-05	0.001168	1	0
JPH4	84502	broad.mit.edu	37	14	24040242	24040242	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:24040242G>T	uc001wkq.2	-	6	2616	c.1698C>A	c.(1696-1698)CCC>CCA	p.P566P	AP1G2_uc001wkl.2_5'Flank|AP1G2_uc001wkn.2_5'Flank|AP1G2_uc010tnp.1_5'Flank|AP1G2_uc010akt.2_5'Flank|JPH4_uc010tnr.1_Silent_p.P231P|JPH4_uc001wkr.2_Silent_p.P566P	NM_032452	NP_115828	Q96JJ6	JPH4_HUMAN	junctophilin 4	566	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane				ovary(1)|pancreas(1)	2	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		GCATGGCGATGGGCTCAGGCT	0.682			NA											18	80					1.28384e-07	1.56591e-07	0.001882	1	0
RABGGTA	5875	broad.mit.edu	37	14	24738353	24738353	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:24738353C>G	uc001wof.2	-	6	1070	c.648G>C	c.(646-648)CAG>CAC	p.Q216H	RABGGTA_uc001woe.2_RNA|RABGGTA_uc001wog.2_Missense_Mutation_p.Q216H|RABGGTA_uc001woh.2_RNA|RABGGTA_uc001woi.2_RNA	NM_004581	NP_004572	Q92696	PGTA_HUMAN	Rab geranylgeranyltransferase alpha	216	PFTA 5.				visual perception		Rab geranylgeranyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(265;0.0184)		AGAAGGCATTCTGCACCAGCT	0.587			NA											4	20					0	0	0.000602	0	0
NOVA1	4857	broad.mit.edu	37	14	26917440	26917440	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:26917440T>C	uc001wpy.2	-	5	1567	c.1249A>G	c.(1249-1251)ACA>GCA	p.T417A	NOVA1_uc001wpz.2_Missense_Mutation_p.T393A|NOVA1_uc001wqa.2_Missense_Mutation_p.T295A	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	420					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GATCCATCTGTGGACTTTTCT	0.463			NA											7	65					0	0	0.00308	0	0
FSCB	84075	broad.mit.edu	37	14	44975130	44975130	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:44975130G>A	uc001wvn.2	-	1	1370	c.1061C>T	c.(1060-1062)TCA>TTA	p.S354L		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	354	Pro-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CTCTTCAGCTGATGGAGGCAG	0.507			NA											11	122					0	0	0.001368	0	0
FRMD6	122786	broad.mit.edu	37	14	52186887	52186887	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:52186887G>T	uc001wzd.2	+	11	1424	c.1139G>T	c.(1138-1140)CGC>CTC	p.R380L	FRMD6_uc001wzb.2_Missense_Mutation_p.R372L|FRMD6_uc001wzc.2_Missense_Mutation_p.R372L|FRMD6_uc001wze.2_Missense_Mutation_p.R303L|FRMD6_uc001wzf.2_Missense_Mutation_p.R73L|FRMD6_uc001wzg.2_Missense_Mutation_p.R22L	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	380						cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					AAACACAAGCGCCTGTCCCGT	0.622			NA											21	24					3.28513e-13	4.57708e-13	0.003954	1	0
SLC8A3	6547	broad.mit.edu	37	14	70633906	70633906	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:70633906C>A	uc001xly.2	-	2	1988	c.1234G>T	c.(1234-1236)GGG>TGG	p.G412W	SLC8A3_uc001xlw.2_Missense_Mutation_p.G412W|SLC8A3_uc001xlx.2_Missense_Mutation_p.G412W|SLC8A3_uc001xlz.2_Missense_Mutation_p.G412W|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	412	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		AGTACAGCCCCACAGTTCTCC	0.522			NA											19	106					1.50039e-11	2.01738e-11	0.001882	1	0
PCNX	22990	broad.mit.edu	37	14	71524403	71524403	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:71524403G>C	uc001xmo.2	+	26	5260	c.4814G>C	c.(4813-4815)GGT>GCT	p.G1605A	PCNX_uc010are.1_Missense_Mutation_p.G1494A|PCNX_uc010arf.1_Intron	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1605						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		ATAGGCAATGGTCTGGTCACT	0.438			NA											44	310					0	0	0.003214	0	0
C14orf43	91748	broad.mit.edu	37	14	74206175	74206175	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:74206175C>A	uc001xot.2	-	2	1320	c.537G>T	c.(535-537)GTG>GTT	p.V179V	C14orf43_uc001xou.2_Silent_p.V179V|C14orf43_uc010tud.1_Silent_p.V179V|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		TCATTGGTCGCACATAGCGGT	0.617			NA											18	113					3.51602e-12	4.81163e-12	0.008871	1	0
C14orf145	145508	broad.mit.edu	37	14	81227931	81227931	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:81227931C>G	uc001xux.2	-	16	2574	c.2403G>C	c.(2401-2403)GAG>GAC	p.E801D	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	801	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		TCCTTAAGTGCTCCTCTTCAA	0.383			NA											32	74					0	0	0.009535	0	0
RIN3	79890	broad.mit.edu	37	14	93118589	93118589	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:93118589G>T	uc001yap.2	+	6	1347	c.1195G>T	c.(1195-1197)GAC>TAC	p.D399Y	RIN3_uc010auk.2_Missense_Mutation_p.D61Y|RIN3_uc001yaq.2_Missense_Mutation_p.D324Y|RIN3_uc001yar.1_Missense_Mutation_p.D61Y|RIN3_uc001yas.1_Missense_Mutation_p.D61Y	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	399	Pro-rich.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				GTCCTTAGAAGACCAAAGTCC	0.677			NA											9	46					4.68919e-08	5.80489e-08	0.008291	1	0
AHNAK2	113146	broad.mit.edu	37	14	105420104	105420104	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:105420104T>C	uc010axc.1	-	7	1804	c.1684A>G	c.(1684-1686)AGG>GGG	p.R562G	AHNAK2_uc001ypx.2_Missense_Mutation_p.R462G	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	562						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATCCTTGTCCTCTGTAGTCCT	0.557			NA											38	420					0	0	0.005524	0	0
AHNAK2	113146	broad.mit.edu	37	14	105420649	105420649	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr14:105420649C>G	uc010axc.1	-	7	1259	c.1139G>C	c.(1138-1140)AGG>ACG	p.R380T	AHNAK2_uc001ypx.2_Missense_Mutation_p.R280T	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	380						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CTGTTCTGCCCTCTCCTCTCT	0.632			NA											4	74					0	0	0.001984	0	0
HERC2	8924	broad.mit.edu	37	15	28359782	28359782	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:28359782T>C	uc001zbj.2	-	90	13995	c.13889A>G	c.(13888-13890)TAC>TGC	p.Y4630C	HERC2_uc001zbi.2_Missense_Mutation_p.Y319C	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4630	HECT.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CAGCCGCACGTACTCCGCGCG	0.527			NA											23	41					0	0	0.004656	0	0
TRPM1	4308	broad.mit.edu	37	15	31324994	31324994	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:31324994C>A	uc001zfm.2	-	21	2912	c.2784G>T	c.(2782-2784)CGG>CGT	p.R928R	TRPM1_uc010azy.2_Silent_p.R835R|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	928	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		AGTAGATCACCCGGCCATAGC	0.478			NA											37	76					9.39024e-22	1.46357e-21	0.009718	1	0
AQR	9716	broad.mit.edu	37	15	35168171	35168171	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:35168171G>T	uc001ziv.2	-	28	3383	c.3202C>A	c.(3202-3204)CTG>ATG	p.L1068M		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	1068						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		TCTATCTCCAGAATCTGAGCA	0.353			NA											8	41					0.000274275	0.000298378	0.004482	1	0
MGA	23269	broad.mit.edu	37	15	42042588	42042588	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:42042588A>G	uc010ucy.1	+	17	6964	c.6783A>G	c.(6781-6783)GCA>GCG	p.A2261A	MGA_uc010ucz.1_Silent_p.A2052A|MGA_uc010uda.1_Silent_p.A877A|MGA_uc001zoi.2_Silent_p.A475A	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2222	Basic motif.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GGAGAGCTGCAAAAAGCAGCA	0.448			NA											10	46					0	0	0.006214	0	0
TMEM87A	25963	broad.mit.edu	37	15	42511790	42511790	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:42511790C>T	uc010udd.1	-	17	1687	c.1528G>A	c.(1528-1530)GTT>ATT	p.V510I		NM_015497	NP_056312	Q8NBN3	TM87A_HUMAN	transmembrane protein 87A isoform 1	510						integral to membrane				ovary(1)	1		all_cancers(109;4.28e-16)|all_epithelial(112;1.04e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;1.03e-06)		GCTTTGTTAACTTTACTATTT	0.274			NA											3	14					0	0	0.000602	0	0
CASC4	113201	broad.mit.edu	37	15	44581416	44581416	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:44581416G>A	uc001zto.1	+	1	488	c.189G>A	c.(187-189)CTG>CTA	p.L63L	CASC4_uc001ztp.2_Silent_p.L63L|CASC4_uc001ztq.2_Silent_p.L63L|CASC4_uc010bdu.1_RNA	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	63	Lumenal (Potential).|Potential.					integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		GCGGGCGGCTGGAAAAGCGCA	0.647			NA											10	46					0	0	0.008291	0	0
SHF	90525	broad.mit.edu	37	15	45491056	45491056	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:45491056C>T	uc001zuy.2	-	2	712	c.217G>A	c.(217-219)GGG>AGG	p.G73R		NM_138356	NP_612365	Q7M4L6	SHF_HUMAN	Src homology 2 domain containing F	73										ovary(1)	1		all_cancers(109;8.13e-11)|all_epithelial(112;6.29e-09)|Lung NSC(122;3.57e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.1e-16)|GBM - Glioblastoma multiforme(94;5.98e-06)		TGTTTTGGCCCATTAGCCACG	0.587			NA									OREG0023105	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	157					0	0	0.00361	0	0
MYO5A	4644	broad.mit.edu	37	15	52646197	52646197	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:52646197C>T	uc002aby.2	-	26	3682	c.3438G>A	c.(3436-3438)AAG>AAA	p.K1146K	MYO5A_uc002abx.3_Silent_p.K1146K|MYO5A_uc010ugd.1_5'Flank|MYO5A_uc002aca.1_5'Flank|MYO5A_uc002acb.1_5'Flank|MYO5A_uc002acc.1_5'Flank	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	1146	Potential.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		GAGGTACCTTCTTCTCACTTG	0.423			NA											11	75					0	0	0.001855	0	0
RNF111	54778	broad.mit.edu	37	15	59323058	59323058	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:59323058A>G	uc002afv.2	+	2	316	c.37A>G	c.(37-39)ACC>GCC	p.T13A	RNF111_uc002afs.2_Missense_Mutation_p.T13A|RNF111_uc002aft.2_Missense_Mutation_p.T13A|RNF111_uc002afu.2_Missense_Mutation_p.T13A|RNF111_uc002afw.2_Missense_Mutation_p.T13A	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	13					multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		CGAGCTCTACACCTTAAAAGT	0.393	NSCLC(72;983 1365 10746 34387 47081)		NA											6	83					0	0	0.001984	0	0
PARP16	54956	broad.mit.edu	37	15	65559014	65559014	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:65559014G>A	uc002aoo.2	-	3	659	c.405C>T	c.(403-405)AAC>AAT	p.N135N	PARP16_uc002aop.2_Intron|PARP16_uc002aoq.2_Silent_p.N135N	NM_017851	NP_060321	Q8N5Y8	PAR16_HUMAN	poly (ADP-ribose) polymerase family, member 16	135	PARP catalytic.					integral to membrane	NAD+ ADP-ribosyltransferase activity			lung(2)	2						AAAATTTGGCGTTGGCTGGGT	0.453	NSCLC(50;885 1163 13509 21242 41978)		NA											23	47					0	0	0.004656	0	0
IGDCC4	57722	broad.mit.edu	37	15	65681620	65681620	+	Splice_Site	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:65681620A>G	uc002aou.1	-	14	2746	c.2536_splice	c.e14+1	p.R846_splice	IGDCC4_uc002aot.1_Splice_Site_p.R434_splice	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member							integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GGAGCCACTCACGGTCAGGCA	0.572			NA											5	22					0	0	0.004482	0	0
LARP6	55323	broad.mit.edu	37	15	71124814	71124814	+	Silent	SNP	C	C	T	rs148356697		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:71124814C>T	uc002ass.2	-	3	1124	c.1053G>A	c.(1051-1053)GCG>GCA	p.A351A		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	351					RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						GCCGTCGGCCCGCCATAGGGG	0.597			NA											13	56					0	0	0.004007	0	0
CSPG4	1464	broad.mit.edu	37	15	75968002	75968002	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:75968002G>T	uc002baw.2	-	10	6951	c.6858C>A	c.(6856-6858)CTC>CTA	p.L2286L		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	2286	Cytoplasmic (Potential).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GCACAGCTGTGAGCGGGATGG	0.662			NA											4	28					3.59834e-05	4.03688e-05	0.001168	1	0
CSPG4	1464	broad.mit.edu	37	15	75968734	75968734	+	Silent	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:75968734A>T	uc002baw.2	-	10	6219	c.6126T>A	c.(6124-6126)ACT>ACA	p.T2042T		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	2042	Extracellular (Potential).|Cysteine-containing.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						GAGCCCTCACAGTGACGTTCA	0.617			NA											4	39					0	0	0.009096	0	0
KIAA1024	23251	broad.mit.edu	37	15	79748634	79748634	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:79748634G>C	uc002bew.1	+	2	220	c.145G>C	c.(145-147)GTG>CTG	p.V49L	KIAA1024_uc010unk.1_Missense_Mutation_p.V49L	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	49						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						ACTGAGAAGTGTGCTCTTCTA	0.458			NA											13	103					0	0	0.006122	0	0
ALPK3	57538	broad.mit.edu	37	15	85383141	85383141	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:85383141G>T	uc002ble.2	+	5	1404	c.1237G>T	c.(1237-1239)GAC>TAC	p.D413Y		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	413					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TGGGGAGGTCGACACTCTGCG	0.677			NA											7	29					0.00198382	0.00210086	0.001984	1	0
ACAN	176	broad.mit.edu	37	15	89399982	89399982	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:89399982A>T	uc010upo.1	+	12	4540	c.4166A>T	c.(4165-4167)GAG>GTG	p.E1389V	ACAN_uc010upp.1_Missense_Mutation_p.E1389V|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1389					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CCTGGAGTAGAGGACATCAGC	0.537			NA											21	146					0	0	0.00632	0	0
ABHD2	11057	broad.mit.edu	37	15	89736526	89736526	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:89736526C>G	uc002bnj.2	+	15	1974	c.1057C>G	c.(1057-1059)CTA>GTA	p.L353V	ABHD2_uc002bnk.2_Missense_Mutation_p.L353V	NM_007011	NP_008942	P08910	ABHD2_HUMAN	alpha/beta hydrolase domain containing protein	353						integral to membrane	carboxylesterase activity			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					TGAAAGTCTTCTAACCATTCC	0.428	Colon(11;252 417 24570 33239 41878)		NA											15	63					0	0	0.008871	0	0
ANPEP	290	broad.mit.edu	37	15	90349374	90349374	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr15:90349374G>T	uc002bop.3	-	2	733	c.441C>A	c.(439-441)CCC>CCA	p.P147P		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	147	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CAATGTCGGGGGGCTGGGAGC	0.612	NSCLC(30;827 977 2459 19669 26125)		NA											18	47					5.03518e-11	6.67844e-11	0.007413	1	0
MSLN	10232	broad.mit.edu	37	16	814999	814999	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:814999A>T	uc002cjw.1	+	7	524	c.473A>T	c.(472-474)GAG>GTG	p.E158V	MSLN_uc002cjt.1_Missense_Mutation_p.E158V|MSLN_uc002cju.1_Missense_Mutation_p.E158V|MSLN_uc010brd.1_Missense_Mutation_p.E157V|MSLN_uc002cjv.1_Missense_Mutation_p.E158V|MSLN_uc002cjx.1_Missense_Mutation_p.E158V|MSLN_uc002cjy.1_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	158					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				GGGGCTCCCGAGCGACAGCGG	0.701			NA											4	14					0	0	0.000978	0	0
TPSD1	23430	broad.mit.edu	37	16	1308351	1308351	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:1308351C>T	uc002clb.1	+	5	712	c.703C>T	c.(703-705)CTG>TTG	p.L235L		NM_012217	NP_036349	Q9BZJ3	TRYD_HUMAN	tryptase delta 1 precursor	235	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				TGGAGGGCCCCTGGTCTGCAA	0.672			NA											12	63					0	0	0.00245	0	0
EME2	197342	broad.mit.edu	37	16	1826131	1826131	+	Silent	SNP	G	G	T	rs151082077	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:1826131G>T	uc002cmq.1	+	8	1227	c.1227G>T	c.(1225-1227)CCG>CCT	p.P409P	MRPS34_uc002cmo.2_5'Flank|MRPS34_uc002cmp.1_5'Flank|EME2_uc010brw.1_Silent_p.P344P	NM_001010865	NP_001010865	A4GXA9	EME2_HUMAN	essential meiotic endonuclease 1 homolog 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					DNA recombination|DNA repair	nucleus	DNA binding|endonuclease activity			lung(1)|central_nervous_system(1)|pancreas(1)	3						TTCCTGTGCCGCCCAGTGAAG	0.701			NA						Direct_reversal_of_damage|Homologous_recombination					16	79					3.32936e-07	4.01087e-07	0.006122	1	0
PKMYT1	9088	broad.mit.edu	37	16	3024067	3024067	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:3024067C>G	uc002csn.2	-	7	1687	c.1244G>C	c.(1243-1245)GGC>GCC	p.G415A	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Missense_Mutation_p.G415A|PKMYT1_uc002cso.2_Missense_Mutation_p.G346A|PKMYT1_uc002csp.2_Missense_Mutation_p.G406A|PKMYT1_uc002csq.2_Missense_Mutation_p.G406A|PKMYT1_uc010bsy.1_Missense_Mutation_p.G406A	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	415	Interaction with PIN1.			G -> D (in Ref. 1; AAB71843).	G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						GGGTGGTGAGCCAGGCGGGGT	0.682			NA											3	14					0	0	0.009096	0	0
PKMYT1	9088	broad.mit.edu	37	16	3025738	3025738	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:3025738C>A	uc002csn.2	-	4	897	c.454G>T	c.(454-456)GCC>TCC	p.A152S	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Missense_Mutation_p.A152S|PKMYT1_uc002cso.2_Missense_Mutation_p.A83S|PKMYT1_uc002csp.2_Missense_Mutation_p.A143S|PKMYT1_uc002csq.2_Missense_Mutation_p.A143S|PKMYT1_uc010bsy.1_Missense_Mutation_p.A143S	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	152	Protein kinase.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						AACTTGCGGGCCCGGTCCTTG	0.677			NA											8	25					0.000157383	0.000173315	0.00308	1	0
TMEM186	25880	broad.mit.edu	37	16	8889820	8889820	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:8889820T>A	uc002cze.2	-	2	665	c.631A>T	c.(631-633)ATG>TTG	p.M211L	PMM2_uc002czf.3_5'Flank|PMM2_uc010uyf.1_5'Flank|PMM2_uc010uyg.1_5'Flank|PMM2_uc010uyh.1_5'Flank|PMM2_uc010buj.2_5'Flank|PMM2_uc010uyi.1_5'Flank|PMM2_uc010uye.1_5'Flank	NM_015421	NP_056236	Q96B77	TM186_HUMAN	transmembrane protein 186	211						integral to membrane|mitochondrion				ovary(1)	1						CACTTGAGCATCTGATGTACC	0.552			NA											67	125					0	0	0.00361	0	0
Unknown	0	broad.mit.edu	37	16	15023226	15023226	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:15023226G>A	uc010uzk.1	+	6	1071	c.795G>A	c.(793-795)ACG>ACA	p.T265T	NPIP_uc002dcx.3_RNA					SubName: Full=cDNA FLJ57488, highly similar to Polycystin-1;												NA						CTGCCCTCACGCCCATCCTCA	0.701			NA											4	121					0	0	0.009096	0	0
RRN3	54700	broad.mit.edu	37	16	15165037	15165037	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:15165037C>A	uc002dde.2	-	13	1268	c.1200G>T	c.(1198-1200)AGG>AGT	p.R400S	PDXDC1_uc002ddc.2_Intron|RRN3_uc010uzp.1_Missense_Mutation_p.R268S|RRN3_uc010uzq.1_Missense_Mutation_p.R370S	NM_018427	NP_060897	Q9NYV6	RRN3_HUMAN	RRN3 RNA polymerase I transcription factor	400					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm				ovary(1)	1						CAGCAGCCTGCCTGATGATGG	0.398			NA											29	239					1.88708e-17	2.79943e-17	0.008361	1	0
KIAA0430	9665	broad.mit.edu	37	16	15703455	15703455	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:15703455G>A	uc002ddr.2	-	20	4072	c.3879C>T	c.(3877-3879)GGC>GGT	p.G1293G	KIAA0430_uc002ddq.2_Silent_p.G1127G|KIAA0430_uc010uzv.1_Silent_p.G1289G|KIAA0430_uc010uzw.1_Silent_p.G1292G	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1292						peroxisome	nucleotide binding|RNA binding				0						TGCACTGCCGGCCAAAGTGGT	0.403			NA											4	147					0	0	0.001168	0	0
TMC7	79905	broad.mit.edu	37	16	19070736	19070736	+	Splice_Site	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:19070736A>T	uc002dfq.2	+	15	2158	c.2028_splice	c.e15-2	p.C676_splice	TMC7_uc002dfp.2_Splice_Site_p.C676_splice|TMC7_uc010vap.1_Splice_Site_p.C566_splice	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a							integral to membrane				skin(2)|ovary(1)	3						CTTGTGTTGCAGCCTCATCAT	0.458			NA											39	147					0	0	0.00874	0	0
GPR139	124274	broad.mit.edu	37	16	20043477	20043477	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:20043477G>T	uc002dgu.1	-	2	804	c.642C>A	c.(640-642)AGC>AGA	p.S214R	GPR139_uc010vaw.1_Missense_Mutation_p.S121R	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	214	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						GACGAAAATTGCTCTTCCTCC	0.522			NA											10	94					0.000151284	0.000167111	0.001855	1	0
DNAH3	55567	broad.mit.edu	37	16	21053462	21053462	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:21053462G>C	uc010vbe.1	-	32	4525	c.4525C>G	c.(4525-4527)CTA>GTA	p.L1509V		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1509	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AATGTCTTTAGCTTCCGAATG	0.537			NA											61	110					0	0	0.00361	0	0
PLK1	5347	broad.mit.edu	37	16	23695312	23695312	+	Missense_Mutation	SNP	G	G	A	rs146806568		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:23695312G>A	uc002dlz.1	+	5	991	c.938G>A	c.(937-939)CGT>CAT	p.R313H		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	313					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		ATCCCTGCCCGTCTCCCCATC	0.542	Colon(12;240 564 27038 33155)		NA											43	407					0	0	0.002522	0	0
KIAA0556	23247	broad.mit.edu	37	16	27786399	27786399	+	Silent	SNP	G	G	T	rs146629703		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:27786399G>T	uc002dow.2	+	24	4467	c.4443G>T	c.(4441-4443)CCG>CCT	p.P1481P		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1481										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CCATCCTGCCGGGCCTGGTGG	0.662			NA											5	53					0.00307968	0.00324859	0.00308	1	0
CLN3	1201	broad.mit.edu	37	16	28498850	28498850	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:28498850G>A	uc002dpo.2	-	6	710	c.387C>T	c.(385-387)CTC>CTT	p.L129L	uc010vct.1_Intron|CLN3_uc002dpl.2_Silent_p.L51L|CLN3_uc010vcu.1_Silent_p.L29L|CLN3_uc002dpn.2_Missense_Mutation_p.R103C|CLN3_uc002dpm.2_Silent_p.L75L|CLN3_uc010vcv.1_Silent_p.L105L|CLN3_uc010byd.2_Silent_p.L129L|CLN3_uc002dpp.2_Silent_p.L129L|CLN3_uc002dpt.1_Silent_p.L29L|CLN3_uc002dpq.1_Silent_p.L129L|CLN3_uc010bye.1_Silent_p.L129L|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Missense_Mutation_p.R75C|CLN3_uc002dpu.1_Silent_p.L75L|CLN3_uc002dpw.1_Missense_Mutation_p.R49C|CLN3_uc010vcw.1_Silent_p.L75L|CLN3_uc002dqa.2_Silent_p.L180L|CLN3_uc010vcx.1_Silent_p.L29L|CLN3_uc002dpx.1_Missense_Mutation_p.R79C|CLN3_uc002dpy.1_Missense_Mutation_p.R46C|CLN3_uc002dpz.1_RNA	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	129	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						TCCCACTGACGAGAACCCGGG	0.587			NA											19	58					0	0	0.001882	0	0
IL27	246778	broad.mit.edu	37	16	28513325	28513325	+	Missense_Mutation	SNP	C	C	T	rs149151528	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:28513325C>T	uc002dqc.2	-	4	457	c.434G>A	c.(433-435)CGC>CAC	p.R145H	uc010vct.1_Intron	NM_145659	NP_663634	Q8NEV9	IL27A_HUMAN	interleukin 27 precursor	145					inflammatory response|innate immune response|positive regulation of interferon-gamma biosynthetic process|regulation of defense response to virus|regulation of T cell proliferation|regulation of T-helper 1 cell differentiation	extracellular space	cytokine activity|interleukin-27 receptor binding				0						CTGCAGATCGCGGAGGTCCAG	0.657			NA											15	162					0	0	0.00499	0	0
SEPT1	1731	broad.mit.edu	37	16	30392730	30392730	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:30392730G>C	uc002dxy.2	-	6	557	c.370C>G	c.(370-372)CTG>GTG	p.L124V	SEPT1_uc002dxw.2_5'Flank|SEPT1_uc002dxx.2_5'UTR|SEPT1_uc010veq.1_Missense_Mutation_p.L171V	NM_052838	NP_443070	Q8WYJ6	SEPT1_HUMAN	septin 1	124					cell cycle|cell division	microtubule organizing center|septin complex	GTP binding|protein binding			ovary(1)	1			Colorectal(24;0.193)			TTCCGGTTCAGGCCACTCTCA	0.592			NA											29	169					0	0	0.00632	0	0
ZNF747	65988	broad.mit.edu	37	16	30544384	30544384	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:30544384C>G	uc002dyn.2	-	2	766	c.572G>C	c.(571-573)GGC>GCC	p.G191A	ZNF768_uc010vex.1_5'UTR|ZNF747_uc002dyo.1_Missense_Mutation_p.G190A|ZNF747_uc010vey.1_Missense_Mutation_p.G190A|uc002dyp.1_5'Flank	NM_023931	NP_076420	Q9BV97	ZN747_HUMAN	zinc finger protein 747	191					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding				0						GAGCCTTCAGCCCAGGAGACC	0.647			NA											13	105					0	0	0.004007	0	0
ZNF629	23361	broad.mit.edu	37	16	30794693	30794693	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:30794693C>T	uc002dzs.1	-	3	1164	c.956G>A	c.(955-957)CGC>CAC	p.R319H		NM_001080417	NP_001073886	Q9UEG4	ZN629_HUMAN	zinc finger protein 629	319	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			CTCGGTGCAGCGGTATGGCTT	0.637			NA											17	45					0	0	0.00278	0	0
ITGAX	3687	broad.mit.edu	37	16	31371127	31371127	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:31371127C>A	uc002ebu.1	+	6	604	c.537C>A	c.(535-537)AGC>AGA	p.S179R	ITGAX_uc002ebt.2_Missense_Mutation_p.S179R|ITGAX_uc010vfk.1_5'Flank	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	179	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGTGATAAGCCAGTTCCAGA	0.587			NA											21	109					7.88262e-20	1.19236e-19	0.00333	1	0
ITGAX	3687	broad.mit.edu	37	16	31374572	31374572	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:31374572G>T	uc002ebu.1	+	14	1654	c.1587G>T	c.(1585-1587)GGG>GGT	p.G529G	ITGAX_uc002ebt.2_Silent_p.G529G|ITGAX_uc010vfk.1_Silent_p.G179G	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	529	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAGTGCTGGGGGATGTGAATG	0.607			NA											69	241					7.14593e-30	1.16432e-29	0.00361	1	0
ITGAD	3681	broad.mit.edu	37	16	31422758	31422758	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:31422758C>A	uc002ebv.1	+	14	1676	c.1627C>A	c.(1627-1629)CCG>ACG	p.P543T	ITGAD_uc010cap.1_Missense_Mutation_p.P544T	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	543	FG-GAP 6.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CATTGGGGCCCCGGGAGAGCA	0.647			NA											56	303					3.4779e-39	5.78933e-39	0.00361	1	0
NOD2	64127	broad.mit.edu	37	16	50744652	50744652	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:50744652G>T	uc002egm.1	+	4	935	c.830G>T	c.(829-831)GGC>GTC	p.G277V	NOD2_uc010cbk.1_Missense_Mutation_p.G250V|NOD2_uc002egl.1_Missense_Mutation_p.G55V|NOD2_uc010cbl.1_Missense_Mutation_p.G55V|NOD2_uc010cbm.1_Missense_Mutation_p.G55V|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	277					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GCCACCCTGGGCCTGGAGGAG	0.637			NA											10	24					1.08611e-07	1.33076e-07	0.000978	1	0
CYLD	1540	broad.mit.edu	37	16	50811792	50811793	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:50811792_50811793GG>TT	uc002egp.1	+	8	1493_1494	c.1078_1079GG>TT	c.(1078-1080)GGG>TTG	p.G360L	CYLD_uc002egn.1_Missense_Mutation_p.G357L|CYLD_uc002ego.2_Missense_Mutation_p.G357L|CYLD_uc010cbs.1_Missense_Mutation_p.G357L|CYLD_uc002egq.1_Missense_Mutation_p.G357L|CYLD_uc002egr.1_Missense_Mutation_p.G357L|CYLD_uc002egs.1_Missense_Mutation_p.G357L	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	360	Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				TACCTTAAATGGGTCTTCTGTT	0.297			NA	Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				4	61					0	0	0.004672	0	0
SALL1	6299	broad.mit.edu	37	16	51174165	51174165	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:51174165G>T	uc010vgs.1	-	2	1999	c.1968C>A	c.(1966-1968)ACC>ACA	p.T656T	SALL1_uc010vgr.1_Silent_p.T559T|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	656					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGTGAAGGTGGTGGCACTGC	0.612	GBM(103;1352 1446 1855 4775 8890)		NA											14	85					4.7546e-09	6.05285e-09	0.004007	1	0
SALL1	6299	broad.mit.edu	37	16	51174492	51174492	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:51174492G>T	uc010vgs.1	-	2	1672	c.1641C>A	c.(1639-1641)GTC>GTA	p.V547V	SALL1_uc010vgr.1_Silent_p.V450V|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	547					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GAGTAGGCAGGACTGGTTTGG	0.572	GBM(103;1352 1446 1855 4775 8890)		NA											18	42					0.000229342	0.000251273	0.001882	1	0
MMP2	4313	broad.mit.edu	37	16	55536706	55536706	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:55536706G>T	uc002ehz.3	+	12	2096	c.1785G>T	c.(1783-1785)AAG>AAT	p.K595N	MMP2_uc010vhd.1_Missense_Mutation_p.K519N|MMP2_uc010ccc.2_Missense_Mutation_p.K545N|MMP2_uc002eia.3_Missense_Mutation_p.K92N	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	595	Hemopexin-like 3.|Required for inhibitor TIMP2 binding.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	ATGAGGTGAAGAAGAAAATGG	0.567			NA											8	65					3.09899e-07	3.74171e-07	0.004482	1	0
SLC12A3	6559	broad.mit.edu	37	16	56906304	56906304	+	Silent	SNP	C	C	A	rs78870559		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:56906304C>A	uc010ccm.2	+	7	923	c.894C>A	c.(892-894)GCC>GCA	p.A298A	SLC12A3_uc002ekd.3_Silent_p.A298A|SLC12A3_uc010ccn.2_Silent_p.A297A	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	298	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TCTCCTTTGCCAACTATTTAG	0.562			NA											6	90					6.42651e-13	8.90779e-13	0.000978	1	0
CX3CL1	6376	broad.mit.edu	37	16	57413650	57413650	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:57413650G>T	uc002eli.2	+	2	242	c.175G>T	c.(175-177)GGC>TGC	p.G59C		NM_002996	NP_002987	P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1 precursor	59	Extracellular (Potential).|Chemokine.				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity				0						GGCATCATGCGGCAAACGCGC	0.512			NA											10	88					0.00010058	0.00011133	0.001368	1	0
HYDIN	54768	broad.mit.edu	37	16	71061506	71061506	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:71061506C>A	uc002ezr.2	-	20	3169	c.3041G>T	c.(3040-3042)AGG>ATG	p.R1014M	HYDIN_uc010cfz.1_Missense_Mutation_p.R759M|HYDIN_uc002ezv.2_Missense_Mutation_p.R1014M	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1014										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCCCCTTACCCTGGGAGTAGC	0.463			NA											4	46					1.23904e-05	1.40913e-05	0.000602	1	0
PLCG2	5336	broad.mit.edu	37	16	81960704	81960704	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:81960704G>T	uc002fgt.2	+	23	2587	c.2435G>T	c.(2434-2436)GGA>GTA	p.G812V		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	812	SH3.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GGAGACTATGGAACCAGGATC	0.547			NA											36	198					6.07928e-31	9.92027e-31	0.009718	1	0
OR3A1	4994	broad.mit.edu	37	17	3195613	3195613	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:3195613G>T	uc002fvh.1	-	1	264	c.264C>A	c.(262-264)CTC>CTA	p.L88L		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						TGCGGGACAGGAGACGACTCA	0.562	GBM(20;287 516 18743 28660 36594)		NA											11	37					7.03913e-09	8.92949e-09	0.001368	1	0
ASPA	443	broad.mit.edu	37	17	3386869	3386869	+	Missense_Mutation	SNP	T	T	C	rs144321760	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:3386869T>C	uc010ckg.2	+	4	600	c.509T>C	c.(508-510)ATA>ACA	p.I170T	SPATA22_uc010vrg.1_Intron|ASPA_uc002fvq.2_Missense_Mutation_p.I170T	NM_001128085	NP_001121557	P45381	ACY2_HUMAN	aspartoacylase	170					aspartate catabolic process	cytoplasm|nucleus	aminoacylase activity|aspartoacylase activity|hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	ACTCGTTCCATAGCCAAGTAT	0.368			NA											20	87					0	0	0.00278	0	0
C17orf74	201243	broad.mit.edu	37	17	7330141	7330141	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:7330141C>A	uc002ggw.2	+	3	904	c.831C>A	c.(829-831)GCC>GCA	p.A277A	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	277						integral to membrane					0		Prostate(122;0.157)				AGCAGTGGGCCTCGTCTCCAC	0.652			NA											4	19					0.000274275	0.000298378	0.004482	1	0
TP53	7157	broad.mit.edu	37	17	7579373	7579373	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:7579373C>T	uc002gim.2	-	4	508	c.314G>A	c.(313-315)GGC>GAC	p.G105D	TP53_uc002gig.1_Missense_Mutation_p.G105D|TP53_uc002gih.2_Missense_Mutation_p.G105D|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Missense_Mutation_p.G105D|TP53_uc010cni.1_Missense_Mutation_p.G105D|TP53_uc002gij.2_Missense_Mutation_p.G105D|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Missense_Mutation_p.G66D|TP53_uc010cnk.1_Missense_Mutation_p.G120D	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	105	Interaction with HIPK1 (By similarity).||Interaction with WWOX.		G -> D (in sporadic cancers; somatic mutation).|G -> S (in a sporadic cancer; somatic mutation).|G -> V (in sporadic cancers; somatic mutation).|G -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.G105C(5)|p.G105fs*18(3)|p.G59fs*23(3)|p.G105R(2)|p.V73fs*9(1)|p.G105_T125del21(1)|p.G105A(1)|p.G105S(1)|p.G105V(1)|p.W91fs*13(1)|p.Y103_G112>C(1)|p.P13fs*18(1)|p.S33fs*23(1)|p.G105G(1)|p.G105D(1)|p.Y103_L111>L(1)|p.Y103fs*15(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ACCGTAGCTGCCCTGGTAGGT	0.622	Pancreas(47;798 1329 9957 10801)		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			30	61					0	0	0.008361	0	0
MYH10	4628	broad.mit.edu	37	17	8415964	8415964	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:8415964C>G	uc002gll.2	-	22	2760	c.2664G>C	c.(2662-2664)GAG>GAC	p.E888D	MYH10_uc002glm.2_Missense_Mutation_p.E919D|MYH10_uc010cnx.2_Missense_Mutation_p.E897D	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	888	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						GGATATTCTTCTCTTCTAAAA	0.408			NA											7	39					0	0	0.001984	0	0
MYH8	4626	broad.mit.edu	37	17	10309716	10309716	+	Splice_Site	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:10309716T>A	uc002gmm.2	-	20	2267	c.2172_splice	c.e20-1	p.R724_splice	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,						muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ACCTTGTATCTGCTCAGTTAA	0.353			NA							Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				22	72					0	0	0.003954	0	0
MYH4	4622	broad.mit.edu	37	17	10360870	10360870	+	Silent	SNP	G	G	T	rs145461988	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:10360870G>T	uc002gmn.2	-	16	1875	c.1764C>A	c.(1762-1764)ACC>ACA	p.T588T	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	588	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGTAGTCCACGGTGCCGGCAT	0.527			NA											10	104					7.48243e-07	8.88487e-07	0.006214	1	0
MYH1	4619	broad.mit.edu	37	17	10399727	10399727	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:10399727T>A	uc002gmo.2	-	34	4890	c.4796A>T	c.(4795-4797)GAG>GTG	p.E1599V	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1599	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTGCATGGACTCCACGATTCT	0.443			NA											26	229					0	0	0.004656	0	0
MYH2	4620	broad.mit.edu	37	17	10440587	10440587	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:10440587T>A	uc010coi.2	-	16	1988	c.1860A>T	c.(1858-1860)CTA>CTT	p.L620L	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.L620L|MYH2_uc010coj.2_Silent_p.L620L	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	620	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AGAGCTGAGCTAGAGTTTTCA	0.433			NA											61	208					0	0	0.00361	0	0
MYH3	4621	broad.mit.edu	37	17	10555781	10555781	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:10555781C>T	uc002gmq.1	-	3	381	c.304G>A	c.(304-306)GTG>ATG	p.V102M		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	102	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TTGTACAGCACGGCTGGCTCA	0.557			NA											32	80					0	0	0.003271	0	0
DNAH9	1770	broad.mit.edu	37	17	11522936	11522937	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:11522936_11522937GG>TT	uc002gne.2	+	6	1256_1257	c.1188_1189GG>TT	c.(1186-1191)GTGGTC>GTTTTC	p.V397F		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	397	Potential.|Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AACTGCAAGTGGTCTCAGACAC	0.431			NA											17	183					0	0	0.004672	0	0
DNAH9	1770	broad.mit.edu	37	17	11532817	11532817	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:11532817G>T	uc002gne.2	+	7	1502	c.1434G>T	c.(1432-1434)CAG>CAT	p.Q478H		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	478	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGAGTCAGCAGGTCCAGCAAA	0.532			NA											25	82					1.68575e-08	2.12098e-08	0.007291	1	0
DNAH9	1770	broad.mit.edu	37	17	11651011	11651011	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:11651011C>A	uc002gne.2	+	32	6606	c.6538C>A	c.(6538-6540)CTC>ATC	p.L2180I	DNAH9_uc010coo.2_Missense_Mutation_p.L1474I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2180	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTGGACTGACCTCAATCCCAA	0.522			NA											16	38					5.35267e-07	6.38408e-07	0.007413	1	0
MYOCD	93649	broad.mit.edu	37	17	12642536	12642536	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:12642536C>T	uc002gnn.2	+	7	907	c.608C>T	c.(607-609)TCA>TTA	p.S203L	MYOCD_uc002gno.2_Missense_Mutation_p.S203L|MYOCD_uc002gnp.1_Missense_Mutation_p.S107L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	203	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GCTTCTGGCTCAGAAAATGAC	0.498			NA											18	86					0	0	0.007413	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13503879	13503879	+	Missense_Mutation	SNP	G	G	C	rs78372491		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:13503879G>C	uc002gob.1	-	1	1366	c.568C>G	c.(568-570)CGC>GGC	p.R190G		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	190	Substrate binding.|Lumenal (Potential).			R->E: 32% loss of enzymatic activity.		Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TCGTAGCTGCGGTCGAAGAAG	0.716			NA											3	10					0	0	0.001984	0	0
MYO18A	399687	broad.mit.edu	37	17	27493336	27493336	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:27493336G>A	uc002hdt.1	-	2	781	c.623C>T	c.(622-624)CCC>CTC	p.P208L	MYO18A_uc010csa.1_Missense_Mutation_p.P208L|MYO18A_uc002hdu.1_Missense_Mutation_p.P208L	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	208					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CACCACGGGGGGCAGGCGCAG	0.667	Esophageal Squamous(182;472 2015 7001 15270 22562)		NA											14	92					0	0	0.00499	0	0
TMIGD1	388364	broad.mit.edu	37	17	28656342	28656342	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:28656342G>C	uc002hfa.1	-	3	361	c.288C>G	c.(286-288)GAC>GAG	p.D96E	TMIGD1_uc010csh.1_Missense_Mutation_p.D96E	NM_206832	NP_996663	Q6UXZ0	TMIG1_HUMAN	transmembrane and immunoglobulin domain	96	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane					0						TGATTCCGTTGTCATTTTCAC	0.483			NA											16	105					0	0	0.003163	0	0
TMEM132E	124842	broad.mit.edu	37	17	32964723	32964723	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:32964723C>A	uc002hif.2	+	10	2755	c.2427C>A	c.(2425-2427)TGC>TGA	p.C809*		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	809	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		GCGTCTTCTGCCTCGCCATCC	0.632			NA											18	83					2.4624e-09	3.16091e-09	0.008871	1	0
AMAC1	146861	broad.mit.edu	37	17	33520879	33520879	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:33520879C>A	uc002hjd.2	-	1	534	c.448G>T	c.(448-450)GAG>TAG	p.E150*		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	150	DUF6 1.					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCCTGGCTCTCAAGGCAGAGA	0.587			NA											44	160					5.7554e-21	8.89321e-21	0.00361	1	0
KRT25	147183	broad.mit.edu	37	17	38910148	38910148	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:38910148A>T	uc002hve.2	-	3	694	c.633T>A	c.(631-633)AGT>AGA	p.S211R		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	211	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TCATCTCCTCACTCAGGGTTT	0.448			NA											54	228					0	0	0.00361	0	0
KRT28	162605	broad.mit.edu	37	17	38953178	38953178	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:38953178A>G	uc002hvh.1	-	5	1034	c.968T>C	c.(967-969)CTG>CCG	p.L323P		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	323	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CGTGGCCATCAGGGACTGCAG	0.577	Melanoma(19;789 869 15380 26882 39836)		NA											3	144					0	0	0.009096	0	0
KRT39	390792	broad.mit.edu	37	17	39118699	39118699	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:39118699G>T	uc002hvo.1	-	4	861	c.825C>A	c.(823-825)ATC>ATA	p.I275I	KRT39_uc010wfm.1_Silent_p.I8I	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	275	Coil 2.|Rod.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				TTGTCTCCATGATGGGCTCAT	0.468			NA											152	554					1.11308e-80	1.88785e-80	0.00361	1	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334263	39334263	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:39334263G>T	uc002hwd.2	-	1	198	c.154C>A	c.(154-156)CAG>AAG	p.Q52K		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	52	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].|8.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			CACACAGACTGGCAGCACTGC	0.672			NA											19	38					2.37509e-13	3.31344e-13	0.010504	1	0
CNTD1	124817	broad.mit.edu	37	17	40959840	40959840	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:40959840T>A	uc002ibm.3	+	6	1012	c.780T>A	c.(778-780)ATT>ATA	p.I260I	CNTD1_uc010wha.1_Silent_p.I177I	NM_173478	NP_775749	Q8N815	CNTD1_HUMAN	cyclin N-terminal domain containing 1	260										central_nervous_system(1)	1		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		TAGGAATCATTGCAGCAAGTG	0.408			NA											22	97					0	0	0.003954	0	0
GPATCH8	23131	broad.mit.edu	37	17	42477130	42477131	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:42477130_42477131CC>AA	uc002igw.1	-	8	2378_2379	c.2314_2315GG>TT	c.(2314-2316)GGT>TTT	p.G772F	GPATCH8_uc002igv.1_Missense_Mutation_p.G694F|GPATCH8_uc010wiz.1_Missense_Mutation_p.G694F	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	772	Poly-Gly.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		ACCACCCCCACCTTCATCCTTT	0.584			NA											10	126					0	0	0.004672	0	0
ZNF652	22834	broad.mit.edu	37	17	47376242	47376242	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:47376242T>A	uc002iov.3	-	6	1818	c.1354A>T	c.(1354-1356)AGC>TGC	p.S452C	ZNF652_uc002iow.2_Missense_Mutation_p.S452C|ZNF652_uc002iou.3_RNA	NM_001145365	NP_001138837	Q9Y2D9	ZN652_HUMAN	zinc finger protein 652	452	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_cancers(4;6.81e-14)|Breast(4;4.97e-29)|all_epithelial(4;1.53e-17)		BRCA - Breast invasive adenocarcinoma(1;3.1e-14)|Epithelial(5;2.92e-06)|all cancers(6;3.15e-05)			TTGGGGCGGCTGGTGAAGCTT	0.468			NA											21	83					0	0	0.00278	0	0
CACNA1G	8913	broad.mit.edu	37	17	48649379	48649379	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:48649379C>T	uc002irk.1	+	5	1099	c.727C>T	c.(727-729)CTA>TTA	p.L243L	CACNA1G_uc002iri.1_Silent_p.L243L|CACNA1G_uc002irj.1_Silent_p.L243L|CACNA1G_uc002irl.1_Silent_p.L243L|CACNA1G_uc002irm.1_Silent_p.L243L|CACNA1G_uc002irn.1_Silent_p.L243L|CACNA1G_uc002iro.1_Silent_p.L243L|CACNA1G_uc002irp.1_Silent_p.L243L|CACNA1G_uc002irq.1_Silent_p.L243L|CACNA1G_uc002irr.1_Silent_p.L243L|CACNA1G_uc002irs.1_Silent_p.L243L|CACNA1G_uc002irt.1_Silent_p.L243L|CACNA1G_uc002irv.1_Silent_p.L243L|CACNA1G_uc002irw.1_Silent_p.L243L|CACNA1G_uc002iru.1_Silent_p.L243L|CACNA1G_uc002irx.1_Silent_p.L156L|CACNA1G_uc002iry.1_Silent_p.L156L|CACNA1G_uc002irz.1_Silent_p.L156L|CACNA1G_uc002isa.1_Silent_p.L156L|CACNA1G_uc002isb.1_Silent_p.L156L|CACNA1G_uc002isc.1_Silent_p.L156L|CACNA1G_uc002isd.1_Silent_p.L156L|CACNA1G_uc002ise.1_Silent_p.L156L|CACNA1G_uc002isf.1_Silent_p.L156L|CACNA1G_uc002isg.1_Silent_p.L156L|CACNA1G_uc002ish.1_Silent_p.L156L|CACNA1G_uc002isi.1_Silent_p.L156L	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	243	Extracellular (Potential).|I.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CCGATGCTTCCTACCTGAGAA	0.602			NA											5	69					0	0	0.000602	0	0
KIF2B	84643	broad.mit.edu	37	17	51900791	51900791	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:51900791G>A	uc002iua.2	+	1	553	c.397G>A	c.(397-399)GTG>ATG	p.V133M	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	133					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CAGCCTGGATGTGAGGGTCCC	0.582			NA											18	154					0	0	0.007413	0	0
KIF2B	84643	broad.mit.edu	37	17	51902231	51902231	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:51902231G>T	uc002iua.2	+	1	1993	c.1837G>T	c.(1837-1839)GGG>TGG	p.G613W	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	613					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CACAATTTCAGGGAAGGGATC	0.418			NA											12	157					0.00136819	0.00145751	0.001368	1	0
MKS1	54903	broad.mit.edu	37	17	56290356	56290356	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:56290356C>G	uc002ivr.1	-	8	920	c.845G>C	c.(844-846)CGA>CCA	p.R282P	MKS1_uc010wnq.1_Missense_Mutation_p.R79P|MKS1_uc002ivs.1_Missense_Mutation_p.R282P	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	282					cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						CTTGAACACTCGCCGTTCCCG	0.537			NA											42	89					0	0	0.00361	0	0
SKA2	348235	broad.mit.edu	37	17	57208721	57208721	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:57208721T>A	uc002ixd.2	-	2	317	c.41A>T	c.(40-42)AAA>ATA	p.K14I	SKA2_uc002ixc.2_RNA|SKA2_uc010dde.1_Nonsense_Mutation_p.K46*|SKA2_uc002ixe.2_RNA	NM_182620	NP_872426	Q8WVK7	SKA2_HUMAN	spindle and KT associated 2 isoform 1	14					cell division|chromosome segregation|mitotic anaphase|mitotic prometaphase|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytosol|spindle microtubule	microtubule binding				0						AGACTCAGCTTTCTGGAACTA	0.313			NA											5	7					0	0	0.001984	0	0
CLTC	1213	broad.mit.edu	37	17	57728627	57728627	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:57728627G>A	uc002ixq.1	+	5	1188	c.745G>A	c.(745-747)GAT>AAT	p.D249N	CLTC_uc002ixp.2_Missense_Mutation_p.D249N|CLTC_uc002ixr.1_Missense_Mutation_p.D253N	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	249	Globular terminal domain.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GAAGGCAGTGGATGTCTTCTT	0.284			NA	T	ALK|TFE3	ALCL|renal 								37	197					0	0	0.002522	0	0
PSMD12	5718	broad.mit.edu	37	17	65340847	65340847	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:65340847G>T	uc002jfy.2	-	9	1044	c.958C>A	c.(958-960)CTT>ATT	p.L320I	PSMD12_uc002jga.2_Missense_Mutation_p.L300I|PSMD12_uc002jfz.2_Missense_Mutation_p.L261I	NM_002816	NP_002807	O00232	PSD12_HUMAN	proteasome 26S non-ATPase subunit 12 isoform 1	320	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding				0	all_cancers(12;2.38e-11)|all_epithelial(3;8.27e-13)					TCCTCAACAAGTGTGGACCAA	0.358			NA											18	81					1.02788e-11	1.396e-11	0.00499	1	0
ABCA8	10351	broad.mit.edu	37	17	66873755	66873755	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:66873755G>A	uc002jhp.2	-	31	4163	c.3984C>T	c.(3982-3984)AAC>AAT	p.N1328N	ABCA8_uc002jhq.2_Silent_p.N1368N|ABCA8_uc010wqq.1_Silent_p.N1363N	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1328	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GCCACAGCGCGTTCTCCTGAG	0.597			NA											17	180					0	0	0.006122	0	0
ABCA6	23460	broad.mit.edu	37	17	67111003	67111003	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:67111003C>A	uc002jhw.1	-	13	1857	c.1682G>T	c.(1681-1683)TGT>TTT	p.C561F	ABCA6_uc002jhx.1_Missense_Mutation_p.C14F	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	561	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GAATTGAGGACAGACGCCAGT	0.348			NA											19	122					2.94398e-08	3.67401e-08	0.007413	1	0
KIF19	124602	broad.mit.edu	37	17	72348399	72348399	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:72348399G>T	uc002jkm.3	+	14	2038	c.1900G>T	c.(1900-1902)GAA>TAA	p.E634*	KIF19_uc002jkl.2_Nonsense_Mutation_p.E592*	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	634					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AGAGCTCTACGAAGTGTACCT	0.701			NA											19	22					1.01871e-10	1.33636e-10	0.008871	1	0
OTOP2	92736	broad.mit.edu	37	17	72920736	72920736	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:72920736G>C	uc010wrp.1	+	3	98	c.9G>C	c.(7-9)GAG>GAC	p.E3D	USH1G_uc002jme.1_5'Flank|USH1G_uc010wro.1_5'Flank|OTOP2_uc002jmf.1_Missense_Mutation_p.E3D	NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	3						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					CCATGTCCGAGGAGCTGGCCC	0.692			NA											3	17					0	0	0.004672	0	0
CASKIN2	57513	broad.mit.edu	37	17	73503731	73503731	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:73503731C>A	uc002joc.2	-	4	728	c.178G>T	c.(178-180)GGC>TGC	p.G60C	CASKIN2_uc010wsc.1_5'UTR|CASKIN2_uc002jod.2_Missense_Mutation_p.G60C	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	60	ANK 1.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCCAGGCTGCCCCCCAAAGCA	0.607			NA											15	32					1.56452e-12	2.15197e-12	0.007413	1	0
QRICH2	84074	broad.mit.edu	37	17	74288578	74288578	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:74288578G>A	uc002jrd.1	-	4	1912	c.1732C>T	c.(1732-1734)CGT>TGT	p.R578C	QRICH2_uc010wsz.1_Missense_Mutation_p.R504C|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	578	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						TGATCTGCACGAGGTTGTGCC	0.537			NA											12	82					0	0	0.001855	0	0
SPHK1	8877	broad.mit.edu	37	17	74382929	74382929	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:74382929G>A	uc002jrf.1	+	8	1226	c.417G>A	c.(415-417)ACG>ACA	p.T139T	SPHK1_uc002jrg.1_Silent_p.T88T|SPHK1_uc002jrh.2_Silent_p.T153T|SPHK1_uc002jrj.2_Silent_p.T225T|SPHK1_uc002jri.2_Silent_p.T139T|SPHK1_uc002jrk.3_Silent_p.T139T|uc010wtd.1_RNA	NM_001142602	NP_001136074	Q9NYA1	SPHK1_HUMAN	sphingosine kinase 1 isoform 3	139	DAGKc.				'de novo' posttranslational protein folding|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|calcium-mediated signaling|positive regulation of angiogenesis|positive regulation of cell growth|positive regulation of cell migration|positive regulation of fibroblast proliferation|positive regulation of mitotic cell cycle|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|positive regulation of smooth muscle contraction|regulation of tumor necrosis factor-mediated signaling pathway|sphingoid catabolic process|sphingosine metabolic process	cytosol|membrane fraction|nucleus|plasma membrane|soluble fraction	ATP binding|calmodulin binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|DNA binding|magnesium ion binding|protein phosphatase 2A binding|sphinganine kinase activity			kidney(1)	1						CCAACTGCACGCTATTGCTGT	0.607	GBM(90;966 1307 27369 33775 44498)		NA											18	193					0	0	0.008871	0	0
RHBDF2	79651	broad.mit.edu	37	17	74473340	74473340	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:74473340G>A	uc002jrq.1	-	8	1222	c.929C>T	c.(928-930)CCC>CTC	p.P310L	RHBDF2_uc002jrp.1_Missense_Mutation_p.P281L|RHBDF2_uc002jrr.1_Missense_Mutation_p.P162L|RHBDF2_uc010wtf.1_Missense_Mutation_p.P281L|RHBDF2_uc002jrs.1_Missense_Mutation_p.P305L	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	310	Cytoplasmic (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						AGAGAGTGGGGGGGACTCAAA	0.587			NA											4	31					0	0	0.001168	0	0
ENPP7	339221	broad.mit.edu	37	17	77705138	77705138	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:77705138C>A	uc002jxa.2	+	1	257	c.237C>A	c.(235-237)CAC>CAA	p.H79Q		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	79					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GCCCCTGCCACTTCACCCTGG	0.642			NA											6	26					1.06961e-07	1.31504e-07	0.00308	1	0
MC2R	4158	broad.mit.edu	37	18	13885377	13885377	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:13885377C>T	uc002ksp.1	-	2	318	c.141G>A	c.(139-141)CTG>CTA	p.L47L		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	47	Helical; Name=1; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	TGAACACAGCCAGCAGGACGA	0.428	Colon(141;1584 1782 35999 48227 48692)		NA											17	57					0	0	0.007413	0	0
POTEC	388468	broad.mit.edu	37	18	14537826	14537826	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:14537826C>A	uc010dln.2	-	3	1238	c.784G>T	c.(784-786)GGT>TGT	p.G262C	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	262	ANK 4.									skin(3)	3						ATATCAGCACCATATAAGAGC	0.363			NA											9	40					7.48243e-07	8.88487e-07	0.006214	1	0
ANKRD30B	374860	broad.mit.edu	37	18	14799120	14799120	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:14799120C>A	uc010dlo.2	+	21	2230	c.2050C>A	c.(2050-2052)CTT>ATT	p.L684I	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	735										ovary(1)|skin(1)	2						TAATGATGGTCTTCTGAAGGT	0.279			NA											11	61					5.50884e-06	6.33193e-06	0.001368	1	0
LAMA3	3909	broad.mit.edu	37	18	21513790	21513790	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:21513790T>G	uc002kuq.2	+	67	8839	c.8753T>G	c.(8752-8754)CTC>CGC	p.L2918R	LAMA3_uc002kur.2_Missense_Mutation_p.L2862R|LAMA3_uc002kus.3_Missense_Mutation_p.L1309R|LAMA3_uc002kut.3_Missense_Mutation_p.L1253R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2918	Laminin G-like 3.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGTAACTCTCTCAAGAGAGAT	0.428			NA											19	68					0	0	0.007413	0	0
RNF138	51444	broad.mit.edu	37	18	29709131	29709131	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:29709131C>G	uc002kxg.2	+	8	1158	c.719C>G	c.(718-720)TCT>TGT	p.S240C	RNF138_uc002kxh.2_Missense_Mutation_p.S146C	NM_016271	NP_057355	Q8WVD3	RN138_HUMAN	ring finger protein 138 isoform 1	240					Wnt receptor signaling pathway	intracellular	ligase activity|protein kinase binding|zinc ion binding				0						GTTGAAGAATCTTTTCAAGTA	0.368			NA											11	79					0	0	0.00245	0	0
ASXL3	80816	broad.mit.edu	37	18	31324221	31324221	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:31324221C>A	uc010dmg.1	+	12	4464	c.4409C>A	c.(4408-4410)CCG>CAG	p.P1470Q	ASXL3_uc002kxq.2_Missense_Mutation_p.P1177Q	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1470					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CGATCAATTCCGTGTAAAGTC	0.517			NA									OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	64					1.03484e-13	1.45309e-13	0.005524	1	0
SLC39A6	25800	broad.mit.edu	37	18	33706788	33706788	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:33706788G>A	uc010dmy.2	-	2	473	c.183C>T	c.(181-183)TTC>TTT	p.F61F	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	61	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						CATAGCGGTAGAAAAGCTGTT	0.348			NA											41	98					0	0	0.00361	0	0
SETBP1	26040	broad.mit.edu	37	18	42618459	42618459	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:42618459G>T	uc010dni.2	+	5	4306	c.4010G>T	c.(4009-4011)AGT>ATT	p.S1337I		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1337						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GGGATGCCAAGTCCCCACTTA	0.468			NA							Schinzel-Giedion_syndrome				14	61					6.31663e-08	7.78376e-08	0.003163	1	0
SLC14A1	6563	broad.mit.edu	37	18	43314340	43314340	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:43314340T>C	uc010xcn.1	+	6	762	c.443T>C	c.(442-444)CTC>CCC	p.L148P	SLC14A1_uc010dnk.2_Missense_Mutation_p.L204P|SLC14A1_uc002lbf.3_Missense_Mutation_p.L148P|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.L43P|SLC14A1_uc002lbh.3_Missense_Mutation_p.L40P|SLC14A1_uc002lbi.3_Missense_Mutation_p.L16P|SLC14A1_uc002lbj.3_Missense_Mutation_p.L204P|SLC14A1_uc002lbk.3_Missense_Mutation_p.L148P	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	148	Helical; (Potential).					integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						TGGCTGTTACTCCCTGTATGT	0.363			NA											27	67					0	0	0.007291	0	0
SERPINB13	5275	broad.mit.edu	37	18	61264336	61264336	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:61264336G>T	uc002ljc.2	+	8	1083	c.915G>T	c.(913-915)ATG>ATT	p.M305I	SERPINB13_uc002ljd.2_Missense_Mutation_p.M169I|SERPINB13_uc010xep.1_Missense_Mutation_p.M314I|SERPINB13_uc010xeq.1_Missense_Mutation_p.M126I|SERPINB13_uc010xer.1_Missense_Mutation_p.M126I	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	305					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						CCATGGGGATGGGCGATGCCT	0.562			NA											17	108					5.3912e-06	6.22996e-06	0.006122	1	0
SERPINB3	6317	broad.mit.edu	37	18	61323236	61323236	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:61323236T>A	uc002lji.2	-	8	972	c.828A>T	c.(826-828)AGA>AGT	p.R276S	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Missense_Mutation_p.R224S	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	276					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CACGTGTCTCTCTCATATTCT	0.403			NA											38	31					0	0	0.007835	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390485	61390485	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:61390485C>G	uc002ljk.3	+	9	1093	c.1031C>G	c.(1030-1032)ACG>AGG	p.T344R	SERPINB11_uc010xes.1_Missense_Mutation_p.T169R|SERPINB11_uc010dqd.2_Intron|SERPINB11_uc002ljj.3_Missense_Mutation_p.T230R|SERPINB11_uc010dqe.2_Missense_Mutation_p.T143R|SERPINB11_uc010dqf.2_Missense_Mutation_p.T142R	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	344	RCL (By similarity).				regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				GAAGAGGGCACGGAGGCAGCA	0.498	Ovarian(27;496 784 5942 8975 23930)		NA											28	25					0	0	0.002445	0	0
CDH19	28513	broad.mit.edu	37	18	64178899	64178899	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:64178899C>A	uc002lkc.1	-	10	1620	c.1482G>T	c.(1480-1482)GTG>GTT	p.V494V	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Intron	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	494	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				CATCTCTATCCACTGCACTGA	0.323			NA											10	33					0.00136819	0.00145751	0.001368	1	0
RTTN	25914	broad.mit.edu	37	18	67718785	67718785	+	Splice_Site	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:67718785C>A	uc002lkp.2	-	39	5254	c.5186_splice	c.e39-1	p.D1729_splice	RTTN_uc002lko.2_Splice_Site|RTTN_uc010xfb.1_Splice_Site_p.D817_splice|RTTN_uc010dqp.2_Splice_Site	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin								binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				AACTCTTTATCTATAAAATTA	0.338			NA											12	8					9.31168e-06	1.06462e-05	0.001855	1	0
NETO1	81832	broad.mit.edu	37	18	70451078	70451078	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:70451078C>A	uc002lkw.2	-	7	987	c.703G>T	c.(703-705)GCT>TCT	p.A235S	NETO1_uc002lkx.1_Missense_Mutation_p.A234S|NETO1_uc002lky.1_Missense_Mutation_p.A235S	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	235	CUB 2.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TCATACACAGCCACAAAATTC	0.393			NA											92	88					1.53058e-52	2.5797e-52	0.00361	1	0
ZNF407	55628	broad.mit.edu	37	18	72353080	72353080	+	Splice_Site	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:72353080T>C	uc002llw.2	+	2	4859	c.4802_splice	c.e2+2	p.G1601_splice	ZNF407_uc010xfc.1_Splice_Site_p.G1601_splice|ZNF407_uc010dqu.1_Splice_Site_p.G1601_splice	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		TGTCTGTGGGTGAGTAAATTG	0.458			NA											33	70					0	0	0.002445	0	0
NFATC1	4772	broad.mit.edu	37	18	77221367	77221367	+	Splice_Site	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr18:77221367G>T	uc010xfg.1	+	7	2412	c.1959_splice	c.e7+1	p.P653_splice	NFATC1_uc002lnc.1_Splice_Site_p.P653_splice|NFATC1_uc010xff.1_Splice_Site_p.R625_splice|NFATC1_uc002lnd.2_Splice_Site_p.P653_splice|NFATC1_uc002lne.2_Splice_Site_p.P181_splice|NFATC1_uc010xfh.1_Splice_Site_p.P653_splice|NFATC1_uc010xfi.1_Splice_Site_p.P640_splice|NFATC1_uc010xfj.1_Splice_Site_p.P181_splice|NFATC1_uc002lnf.2_Splice_Site_p.P640_splice|NFATC1_uc002lng.2_Splice_Site_p.P640_splice|NFATC1_uc010xfk.1_Splice_Site_p.P640_splice	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic						intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GTGCAAGCCGGTGAGTGCCTT	0.632	GBM(151;1210 2593 28719 45011)		NA											9	28					1.3612e-06	1.59871e-06	0.003163	1	0
GIPC3	126326	broad.mit.edu	37	19	3586949	3586950	+	Missense_Mutation	DNP	CC	CC	AG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:3586949_3586950CC>AG	uc002lyd.3	+	3	576_577	c.549_550CC>AG	c.(547-552)TCCCAG>TCAGAG	p.Q184E		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	184	PDZ.									breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCCAAGTCCCAGCCCTTCAC	0.658			NA									OREG0025154	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	31					0	0	0.004672	0	0
TJP3	27134	broad.mit.edu	37	19	3735930	3735930	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:3735930G>A	uc010xhv.1	+	9	1223	c.1223G>A	c.(1222-1224)CGT>CAT	p.R408H	TJP3_uc010xhs.1_Missense_Mutation_p.R375H|TJP3_uc010xht.1_Missense_Mutation_p.R339H|TJP3_uc010xhu.1_Missense_Mutation_p.R384H|TJP3_uc010xhw.1_Missense_Mutation_p.R394H	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	389						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGGAGGATCGTGGGTATGTA	0.522			NA											22	179					0	0	0.002299	0	0
PNPLA6	10908	broad.mit.edu	37	19	7625548	7625548	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:7625548G>T	uc010xjq.1	+	31	3939	c.3744G>T	c.(3742-3744)CAG>CAT	p.Q1248H	PNPLA6_uc002mgq.1_Missense_Mutation_p.Q1200H|PNPLA6_uc010xjp.1_Missense_Mutation_p.Q1173H|PNPLA6_uc002mgr.1_Missense_Mutation_p.Q1200H|PNPLA6_uc002mgs.2_Missense_Mutation_p.Q1238H|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	1239	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						TGGGCTACCAGTACGGGAAGG	0.577			NA											15	29					8.00594e-06	9.19232e-06	0.007413	1	0
FBN3	84467	broad.mit.edu	37	19	8130912	8130912	+	Missense_Mutation	SNP	C	C	A	rs139098536		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:8130912C>A	uc002mjf.2	-	63	8342	c.8321G>T	c.(8320-8322)CGG>CTG	p.R2774L	FBN3_uc002mje.2_Missense_Mutation_p.R570L	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2774						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CACCTCCAGCCGGTAGGTTCC	0.677			NA											20	46					5.35047e-06	6.18954e-06	0.00333	1	0
FBN3	84467	broad.mit.edu	37	19	8194190	8194190	+	Silent	SNP	G	G	T	rs150195254		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:8194190G>T	uc002mjf.2	-	16	2125	c.2104C>A	c.(2104-2106)CGG>AGG	p.R702R		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	702	EGF-like 8; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TAGCTGCCCCGAAGGTTCTCG	0.617			NA											16	43					1.50039e-11	2.01738e-11	0.001882	1	0
MUC16	94025	broad.mit.edu	37	19	9012535	9012535	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:9012535G>T	uc002mkp.2	-	35	38875	c.38671C>A	c.(38671-38673)CTT>ATT	p.L12891I	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12893	SEA 6.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGGACCAAGCTGTGGAGGA	0.562			NA											62	74					3.61411e-23	5.69897e-23	0.00361	1	0
MUC16	94025	broad.mit.edu	37	19	9046404	9046404	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:9046404C>T	uc002mkp.2	-	5	35431	c.35227G>A	c.(35227-35229)GTG>ATG	p.V11743M		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11745	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGAAGTCACCATCTCTGGT	0.502			NA											49	41					0	0	0.00361	0	0
MUC16	94025	broad.mit.edu	37	19	9046491	9046491	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:9046491C>T	uc002mkp.2	-	5	35344	c.35140G>A	c.(35140-35142)GAT>AAT	p.D11714N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11716	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGTGGCATCTGGACTACTA	0.507			NA											23	85					0	0	0.00333	0	0
MUC16	94025	broad.mit.edu	37	19	9048898	9048899	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:9048898_9048899GG>TT	uc002mkp.2	-	5	32936_32937	c.32732_32733CC>AA	c.(32731-32733)ACC>AAA	p.T10911K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10913	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCCATGACTGGTGGCCATTGA	0.51			NA											21	91					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9072226	9072226	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:9072226A>T	uc002mkp.2	-	3	15424	c.15220T>A	c.(15220-15222)TCT>ACT	p.S5074T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5076	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTAGGCCAGAGGTGAGAAGT	0.473			NA											29	150					0	0	0.009535	0	0
MRI1	84245	broad.mit.edu	37	19	13883024	13883024	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:13883024G>T	uc002mxe.2	+	6	1105	c.1039G>T	c.(1039-1041)GAG>TAG	p.E347*	MRI1_uc002mxf.2_Nonsense_Mutation_p.E300*|C19orf53_uc002mxg.2_5'Flank	NM_001031727	NP_001026897	Q9BV20	MTNA_HUMAN	translation initiation factor eIF-2B subunit	347					L-methionine salvage from methylthioadenosine	cell projection|cytoplasm|nucleus	identical protein binding|S-methyl-5-thioribose-1-phosphate isomerase activity			ovary(1)	1						CTTTGCCCCTGAGGAGCTCCG	0.582			NA											21	54					7.33628e-21	1.12713e-20	0.002299	1	0
CC2D1A	54862	broad.mit.edu	37	19	14024011	14024011	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:14024011G>T	uc002mxo.2	+	5	708	c.409G>T	c.(409-411)GAG>TAG	p.E137*	CC2D1A_uc002mxn.2_Nonsense_Mutation_p.E36*|CC2D1A_uc002mxp.2_Nonsense_Mutation_p.E137*|CC2D1A_uc010dzh.2_5'UTR	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	137					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			TCCGGGGCTGGAGACCACCTT	0.642			NA											6	11					4.68919e-08	5.80489e-08	0.008291	1	0
EMR3	84658	broad.mit.edu	37	19	14740861	14740861	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:14740861A>T	uc002mzi.3	-	14	1950	c.1802T>A	c.(1801-1803)CTC>CAC	p.L601H	EMR3_uc010dzp.2_Missense_Mutation_p.L549H|EMR3_uc010xnv.1_Missense_Mutation_p.L475H	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	601	Helical; Name=7; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						CTGCTGGCTGAGGAGGCAGTA	0.453			NA											21	24					0	0	0.005443	0	0
ZNF333	84449	broad.mit.edu	37	19	14829857	14829857	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:14829857A>T	uc002mzn.2	+	12	1852	c.1718A>T	c.(1717-1719)GAG>GTG	p.E573V	ZNF333_uc002mzk.3_Missense_Mutation_p.E464V	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	573	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCCTTCAGTGAGCCCTCATCC	0.532	NSCLC(60;75 1281 16985 25154 29885)		NA											14	53					0	0	0.00245	0	0
SLC1A6	6511	broad.mit.edu	37	19	15082552	15082552	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:15082552T>A	uc002naa.1	-	2	348	c.340A>T	c.(340-342)ACA>TCA	p.T114S	SLC1A6_uc010dzu.1_Missense_Mutation_p.T114S|SLC1A6_uc010xod.1_Missense_Mutation_p.H118L|SLC1A6_uc002nab.2_Missense_Mutation_p.T114S|SLC1A6_uc002nac.2_Missense_Mutation_p.T114S|SLC1A6_uc002nad.1_Missense_Mutation_p.T114S	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	114	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CTCTCACCTGTGACCAGGCTG	0.557			NA											25	36					0	0	0.00632	0	0
CILP2	148113	broad.mit.edu	37	19	19655881	19655881	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:19655881G>A	uc002nmv.3	+	8	2612	c.2527G>A	c.(2527-2529)GGG>AGG	p.G843R	CILP2_uc002nmw.3_Missense_Mutation_p.G849R	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	843						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GGACAGGCTGGGGTACCGTCG	0.716			NA											15	7					0	0	0.004656	0	0
ZNF253	56242	broad.mit.edu	37	19	19990929	19990929	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:19990929G>T	uc002noj.2	+	3	292	c.200G>T	c.(199-201)AGA>ATA	p.R67I	ZNF253_uc002nok.2_Intron|ZNF253_uc002nol.2_Intron	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	67	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACTATGGAAAGACATGAGATG	0.378			NA											17	64					1.56452e-12	2.15197e-12	0.007413	1	0
ZNF100	163227	broad.mit.edu	37	19	21909902	21909902	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:21909902T>C	uc002nqi.2	-	5	1411	c.1212A>G	c.(1210-1212)GAA>GAG	p.E404E	ZNF100_uc002nqh.2_Silent_p.E340E	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	404	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCCGCATTCTTCACATTTGT	0.383			NA											4	45					0	0	0.009096	0	0
ZNF257	113835	broad.mit.edu	37	19	22272135	22272135	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:22272135C>T	uc010ecx.2	+	4	1752	c.1583C>T	c.(1582-1584)TCA>TTA	p.S528L	ZNF257_uc010ecy.2_Missense_Mutation_p.S496L	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	528	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				AATCGTTTCTCATACCTTACC	0.388			NA											5	31					0	0	0.000602	0	0
ZNF91	7644	broad.mit.edu	37	19	23544297	23544297	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:23544297C>G	uc002nre.2	-	4	1597	c.1484G>C	c.(1483-1485)TGT>TCT	p.C495S	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.C463S	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	495	C2H2-type 13.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				AGCTTTGCCACATTCTTCACA	0.368			NA											4	92					0	0	0.009096	0	0
ZNF536	9745	broad.mit.edu	37	19	30935936	30935936	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:30935936G>T	uc002nsu.1	+	2	1605	c.1467G>T	c.(1465-1467)CTG>CTT	p.L489L	ZNF536_uc010edd.1_Silent_p.L489L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	489					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACTCCCTCCTGGGATGCCTCA	0.657			NA											18	74					3.32936e-07	4.01087e-07	0.006122	1	0
TSHZ3	57616	broad.mit.edu	37	19	31768572	31768572	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:31768572G>T	uc002nsy.3	-	2	2192	c.2127C>A	c.(2125-2127)ATC>ATA	p.I709I		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	709					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					GGTGGTCGGTGATGATGGCCG	0.612			NA											12	77					4.3838e-07	5.25178e-07	0.001855	1	0
DPY19L3	147991	broad.mit.edu	37	19	32944168	32944168	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:32944168G>A	uc002ntg.2	+	9	1149	c.973G>A	c.(973-975)GCA>ACA	p.A325T	DPY19L3_uc002nth.1_Missense_Mutation_p.A325T|DPY19L3_uc002nti.1_RNA	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	325						integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					AGTATTCATTGCAAGAAAACT	0.308			NA											4	61					0	0	0.009096	0	0
CD22	933	broad.mit.edu	37	19	35828663	35828663	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:35828663C>A	uc010edt.2	+	5	801	c.724C>A	c.(724-726)CCG>ACG	p.P242T	CD22_uc010xst.1_Missense_Mutation_p.P70T|CD22_uc010edu.2_Missense_Mutation_p.P242T|CD22_uc010edv.2_Missense_Mutation_p.P242T|CD22_uc002nzb.3_Intron|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	242	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TCCAGACACCCCGAAGTTGGA	0.597	Ovarian(42;1009 1133 23674 26041)		NA											31	50					2.46105e-21	3.81375e-21	0.002096	1	0
ZFP30	22835	broad.mit.edu	37	19	38126484	38126484	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:38126484G>A	uc002ogv.1	-	6	1474	c.958C>T	c.(958-960)CAT>TAT	p.H320Y	ZFP30_uc002ogw.1_Missense_Mutation_p.H320Y|ZFP30_uc002ogx.1_Missense_Mutation_p.H320Y|ZFP30_uc010xtt.1_Missense_Mutation_p.H319Y	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	320	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTCCAGTATGAAGTTTGTGA	0.458			NA											15	92					0	0	0.006122	0	0
CYP2A6	1548	broad.mit.edu	37	19	41349862	41349862	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:41349862C>G	uc002opl.3	-	9	1345	c.1324G>C	c.(1324-1326)GAA>CAA	p.E442Q		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	442					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	GCCAGGCCTTCTCCGAAACAG	0.602			NA											10	42					0	0	0.00245	0	0
PSG3	5671	broad.mit.edu	37	19	43233356	43233356	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:43233356G>A	uc002oue.2	-	5	1294	c.1162C>T	c.(1162-1164)CAT>TAT	p.H388Y	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Missense_Mutation_p.H388Y|PSG3_uc010eil.2_Missense_Mutation_p.H410Y	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	388	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGCCCGCTATGCTTTGTAGTA	0.468			NA											149	178					0	0	0.00361	0	0
PSG8	440533	broad.mit.edu	37	19	43259311	43259311	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:43259311A>T	uc002ouo.2	-	4	915	c.817T>A	c.(817-819)TGG>AGG	p.W273R	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Missense_Mutation_p.W112R|PSG8_uc002ouh.2_Missense_Mutation_p.W273R|PSG8_uc010ein.2_Missense_Mutation_p.W151R|PSG8_uc002ouj.3_Missense_Mutation_p.W55R|PSG8_uc002ouk.3_Missense_Mutation_p.W112R|PSG8_uc002oul.3_Missense_Mutation_p.W273R|PSG8_uc002oum.3_Missense_Mutation_p.W180R|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Missense_Mutation_p.W180R	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	273	Ig-like C2-type 2.					extracellular region					0		Prostate(69;0.00899)				TTTAGCCACCAAATGTAGGTG	0.473			NA											115	116					0	0	0.00361	0	0
IGFL4	444882	broad.mit.edu	37	19	46543514	46543514	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:46543514C>T	uc002pdy.1	-	3	285	c.231G>A	c.(229-231)CTG>CTA	p.L77L		NM_001002923	NP_001002923	Q6B9Z1	IGFL4_HUMAN	IGF-like family member 4 precursor	77						extracellular region					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.0036)|GBM - Glioblastoma multiforme(486;0.022)|Epithelial(262;0.208)		CCAAAGACTCCAGGCAGCAGT	0.582			NA											16	51					0	0	0.004007	0	0
TULP2	7288	broad.mit.edu	37	19	49387023	49387023	+	Silent	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:49387023G>C	uc002pkz.2	-	11	1414	c.1263C>G	c.(1261-1263)GTC>GTG	p.V421V		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	421					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		TTAGTGGCTGGACATTGATTC	0.493			NA											3	26					0	0	0.001168	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51628974	51628974	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:51628974T>C	uc002pvu.2	+	2	609	c.542T>C	c.(541-543)ATA>ACA	p.I181T	SIGLEC9_uc010yct.1_Missense_Mutation_p.I181T	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	181	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		ATCTCCTGGATAGGGACCTCC	0.662			NA											82	65					0	0	0.00361	0	0
CD33	945	broad.mit.edu	37	19	51729250	51729250	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:51729250C>T	uc002pwa.2	+	3	650	c.610C>T	c.(610-612)CAG>TAG	p.Q204*	CD33_uc010eos.1_Nonsense_Mutation_p.Q204*|CD33_uc010eot.1_Nonsense_Mutation_p.Q77*|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	204	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CCCACGGCCCCAGGACCACGG	0.617			NA											17	54					0	0	0.010504	0	0
FPR2	2358	broad.mit.edu	37	19	52272376	52272376	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:52272376C>A	uc002pxr.2	+	2	510	c.465C>A	c.(463-465)GTC>GTA	p.V155V	FPR2_uc002pxs.3_Silent_p.V155V|FPR2_uc010epf.2_Silent_p.V155V	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	155	Helical; Name=4; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TTGCTCTAGTCCTTACCTTGC	0.512			NA											12	127					2.80697e-09	3.59039e-09	0.000978	1	0
FPR3	2359	broad.mit.edu	37	19	52327946	52327946	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:52327946C>A	uc002pxt.1	+	2	1129	c.945C>A	c.(943-945)CGC>CGA	p.R315R		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	315	Cytoplasmic (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						GACTGATTCGCTCTTTGCCCA	0.512			NA											57	78					4.96213e-28	8.01232e-28	0.00361	1	0
PPP2R1A	5518	broad.mit.edu	37	19	52729033	52729033	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:52729033C>T	uc002pyp.2	+	14	1884	c.1725C>T	c.(1723-1725)GTC>GTT	p.V575V	PPP2R1A_uc010ydk.1_Silent_p.V520V|PPP2R1A_uc002pyq.2_Silent_p.V396V	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	575	PP2A subunit C binding.|HEAT 15.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		ATGTGGACGTCAAATACTTTG	0.572			NA	Mis		clear cell ovarian carcinoma								15	121					0	0	0.003163	0	0
ZNF611	81856	broad.mit.edu	37	19	53208717	53208717	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:53208717C>G	uc002pzz.2	-	7	1908	c.1591G>C	c.(1591-1593)GGT>CGT	p.G531R	ZNF611_uc010eqc.2_Missense_Mutation_p.G461R|ZNF611_uc010ydo.1_Missense_Mutation_p.G461R|ZNF611_uc010ydr.1_Missense_Mutation_p.G462R|ZNF611_uc010ydp.1_Missense_Mutation_p.G531R|ZNF611_uc010ydq.1_Missense_Mutation_p.G531R|ZNF611_uc002qaa.3_Missense_Mutation_p.G461R	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	531	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		CCAGTATGACCTATCTTATGT	0.368			NA											108	123					0	0	0.00361	0	0
NLRP12	91662	broad.mit.edu	37	19	54327411	54327411	+	Silent	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:54327411G>C	uc002qch.3	-	1	238	c.18C>G	c.(16-18)GGC>GGG	p.G6G	NLRP12_uc002qci.3_Silent_p.G6G|NLRP12_uc002qcj.3_Silent_p.G6G|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.G6G	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	6	DAPIN.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GGCCGTCCCTGCCTGCGGTTC	0.612			NA											10	33					0	0	0.001368	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55341634	55341634	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:55341634C>A	uc002qhk.3	+	9	1302	c.1239C>A	c.(1237-1239)CGC>CGA	p.R413R	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.R338R|KIR3DL1_uc010esf.2_Silent_p.R318R|KIR3DL1_uc010yfo.1_Silent_p.R355R|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_5'Flank|KIR2DS4_uc002qhm.1_5'Flank	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	413	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		AAATCACTCGCCCTTCTCAGA	0.507			NA											86	257					3.56499e-28	5.76501e-28	0.00361	1	0
ZNF814	730051	broad.mit.edu	37	19	58385762	58385762	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:58385762C>G	uc002qqo.2	-	3	1268	c.996G>C	c.(994-996)TCG>TCC	p.S332S	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	332	C2H2-type 5.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						ATTTGCTAAACGATTTCCCAC	0.358			NA											3	4					0	0	0.004672	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565273	58565273	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:58565273G>A	uc002qrc.1	+	6	1328	c.1081G>A	c.(1081-1083)GTC>ATC	p.V361I		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	361					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CCGGGAGTCCGTCCCACCCAG	0.662			NA											12	43					0	0	0.001368	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028649	59028649	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr19:59028649G>A	uc002qtd.2	-	2	684	c.392C>T	c.(391-393)TCT>TTT	p.S131F	ZBTB45_uc002qte.2_Missense_Mutation_p.S131F|ZBTB45_uc002qtf.2_Missense_Mutation_p.S131F	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	131	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		CGTGGGCGCAGAGGTGCCCGG	0.706	NSCLC(164;1383 2017 5233 27540 46677)		NA									OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	22					0	0	0.004672	0	0
TSSC1	7260	broad.mit.edu	37	2	3341899	3341899	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:3341899C>A	uc002qxj.2	-	3	341	c.148G>T	c.(148-150)GAT>TAT	p.D50Y		NM_003310	NP_003301	Q53HC9	TSSC1_HUMAN	tumor suppressing subtransferable candidate 1	50							protein binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.212)		OV - Ovarian serous cystadenocarcinoma(76;0.00877)|Epithelial(75;0.0283)|all cancers(51;0.0464)		TTGTTTTCATCGTCAAAATCT	0.403	Colon(140;1261 1762 4183 34270 49743)		NA											27	45					1.42536e-11	1.93095e-11	0.004656	1	0
KIDINS220	57498	broad.mit.edu	37	2	8930077	8930077	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:8930077G>A	uc002qzc.2	-	14	1736	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	KIDINS220_uc010yiv.1_Silent_p.F284F|KIDINS220_uc002qzd.2_Silent_p.F476F|KIDINS220_uc010yiw.1_Silent_p.F519F	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	518	KAP NTPase.|Helical; (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GGTGGACCGTGAAGGCAAACA	0.413			NA											11	133					0	0	0.001368	0	0
SDC1	6382	broad.mit.edu	37	2	20402564	20402564	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:20402564T>A	uc002rdo.1	-	5	1195	c.896A>T	c.(895-897)TAC>TTC	p.Y299F	SDC1_uc002rdp.1_Missense_Mutation_p.Y299F|SDC1_uc010exv.2_Intron	NM_002997	NP_002988	P18827	SDC1_HUMAN	syndecan 1 precursor	299	Cytoplasmic (Potential).				lipid metabolic process|lipoprotein metabolic process|myoblast development|striated muscle cell development	cytoplasm|extracellular region|focal adhesion|integral to plasma membrane	cytoskeletal protein binding|protein C-terminus binding			ovary(4)|skin(1)	5	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)			OV - Ovarian serous cystadenocarcinoma(76;0.221)		GGGCTTCTGGTAGGCCCCGCC	0.597			NA											65	90					0	0	0.00361	0	0
ITSN2	50618	broad.mit.edu	37	2	24533500	24533500	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:24533500T>A	uc002rfe.2	-	6	672	c.414A>T	c.(412-414)ACA>ACT	p.T138T	ITSN2_uc002rff.2_Silent_p.T138T|ITSN2_uc002rfg.2_Silent_p.T138T|ITSN2_uc010eyd.2_Silent_p.T138T	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	138					endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGACAATGATGTTATAGGTG	0.458			NA											9	65					0	0	0.008291	0	0
HADHB	3032	broad.mit.edu	37	2	26502085	26502085	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:26502085G>C	uc002rgz.2	+	9	964	c.713G>C	c.(712-714)CGG>CCG	p.R238P	HADHB_uc010ykv.1_Missense_Mutation_p.R216P|HADHB_uc010ykw.1_Missense_Mutation_p.R223P|HADHB_uc002rha.2_Intron|HADHB_uc010ykx.1_Missense_Mutation_p.R164P	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	238					fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCTGTTTCTCGGCTGGAACAG	0.542			NA											19	85					0	0	0.008871	0	0
EHD3	30845	broad.mit.edu	37	2	31472333	31472333	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:31472333G>T	uc002rnu.2	+	3	1109	c.501G>T	c.(499-501)CGG>CGT	p.R167R	EHD3_uc010ymt.1_Silent_p.R167R	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	167					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					GGATCAGCCGGGGTAAGCAAC	0.587			NA											20	28					5.45024e-15	7.80573e-15	0.00333	1	0
CEBPZ	10153	broad.mit.edu	37	2	37428995	37428995	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:37428995C>G	uc002rpz.2	-	16	3107	c.3077G>C	c.(3076-3078)AGA>ACA	p.R1026T	uc002rpx.1_Intron|uc002rpy.1_Intron	NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	1026					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				TTTTGCATCTCTGTTGTGTAG	0.343			NA											14	121					0	0	0.004007	0	0
CEBPZ	10153	broad.mit.edu	37	2	37429980	37429980	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:37429980C>G	uc002rpz.2	-	15	3002	c.2972G>C	c.(2971-2973)GGA>GCA	p.G991A		NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	991					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				AAACTTGGATCCCATATTTTC	0.274			NA											9	55					0	0	0.004482	0	0
THUMPD2	80745	broad.mit.edu	37	2	39993217	39993217	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:39993217C>A	uc002rru.2	-	5	820	c.783G>T	c.(781-783)GTG>GTT	p.V261V	THUMPD2_uc002rrv.2_RNA|THUMPD2_uc010ynt.1_Silent_p.V152V|THUMPD2_uc010ynu.1_3'UTR	NM_025264	NP_079540	Q9BTF0	THUM2_HUMAN	THUMP domain containing 2	261	THUMP.						methyltransferase activity			skin(1)	1		all_hematologic(82;0.248)				GAATCCCCACCACAGAGTAAA	0.333			NA											57	77					1.7104e-27	2.7494e-27	0.00361	1	0
SLC8A1	6546	broad.mit.edu	37	2	40655643	40655643	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:40655643C>G	uc002rrx.2	-	1	1802	c.1778G>C	c.(1777-1779)GGA>GCA	p.G593A	SLC8A1_uc002rry.2_Missense_Mutation_p.G593A|SLC8A1_uc002rrz.2_Missense_Mutation_p.G593A|SLC8A1_uc002rsa.2_Missense_Mutation_p.G593A|SLC8A1_uc002rsd.3_Missense_Mutation_p.G593A|SLC8A1_uc002rsb.1_Missense_Mutation_p.G593A|SLC8A1_uc010fan.1_Missense_Mutation_p.G593A|SLC8A1_uc002rsc.1_Missense_Mutation_p.G593A	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	593	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TTCGAGCTCTCCACAAGTGTC	0.343			NA											22	38					0	0	0.010504	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43926908	43926908	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:43926908A>T	uc010yny.1	+	8	894	c.811A>T	c.(811-813)ACA>TCA	p.T271S	PLEKHH2_uc002rte.3_Missense_Mutation_p.T271S|PLEKHH2_uc002rtf.3_Missense_Mutation_p.T270S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	271						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AAGCTTTGCCACAGATGGTGG	0.483			NA											11	91					0	0	0.008291	0	0
NRXN1	9378	broad.mit.edu	37	2	50733708	50733708	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:50733708C>G	uc010fbq.2	-	13	4019	c.2542G>C	c.(2542-2544)GAG>CAG	p.E848Q	NRXN1_uc002rxb.3_Missense_Mutation_p.E480Q|NRXN1_uc002rxe.3_Missense_Mutation_p.E808Q|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GTGTGCCACTCGTTATCATTG	0.443			NA											10	14					0	0	0.001368	0	0
NRXN1	9378	broad.mit.edu	37	2	51254924	51254924	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:51254924C>T	uc010fbq.2	-	2	1965	c.488G>A	c.(487-489)CGC>CAC	p.R163H	NRXN1_uc002rxe.3_Missense_Mutation_p.R163H|NRXN1_uc002rxd.1_Missense_Mutation_p.R163H	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CGCCGCGGCGCGCAGTTCCGG	0.672			NA											4	18					0	0	0.000602	0	0
SPTBN1	6711	broad.mit.edu	37	2	54852019	54852019	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:54852019G>T	uc002rxu.2	+	11	1510	c.1261G>T	c.(1261-1263)GAA>TAA	p.E421*	SPTBN1_uc002rxv.1_Nonsense_Mutation_p.E421*|SPTBN1_uc002rxx.2_Nonsense_Mutation_p.E408*	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	421	Spectrin 2.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			GGAGAAACTGGAACAGCTCGC	0.483			NA											30	45					2.48696e-23	3.93312e-23	0.003271	1	0
SPTBN1	6711	broad.mit.edu	37	2	54852032	54852032	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:54852032G>T	uc002rxu.2	+	11	1523	c.1274G>T	c.(1273-1275)CGC>CTC	p.R425L	SPTBN1_uc002rxv.1_Missense_Mutation_p.R425L|SPTBN1_uc002rxx.2_Missense_Mutation_p.R412L	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	425	Spectrin 2.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CAGCTCGCCCGCAGATTTGAT	0.483			NA											37	47					2.19962e-31	3.59483e-31	0.00874	1	0
SERTAD2	9792	broad.mit.edu	37	2	64863326	64863326	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:64863326C>G	uc002sde.1	-	2	977	c.680G>C	c.(679-681)GGG>GCG	p.G227A		NM_014755	NP_055570	Q14140	SRTD2_HUMAN	SERTA domain containing 2	227					negative regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleus					0						TTCAAAATTCCCAGGCAGAGA	0.517			NA											18	113					0	0	0.007413	0	0
CLEC4F	165530	broad.mit.edu	37	2	71043307	71043307	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:71043307G>A	uc002shf.2	-	4	1283	c.1206C>T	c.(1204-1206)GCC>GCT	p.A402A	CLEC4F_uc010yqv.1_Silent_p.A402A	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	402	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						GGGAAGTTAAGGCTGAAGCAT	0.443	Colon(107;10 2157 6841 26035)		NA											9	89					0	0	0.008291	0	0
HK2	3099	broad.mit.edu	37	2	75118049	75118049	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:75118049G>T	uc002snd.2	+	18	4661	c.2735G>T	c.(2734-2736)CGT>CTT	p.R912L		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	912	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						TGCCGCATCCGTGAGGCTGGA	0.542			NA											29	25					3.90053e-15	5.5937e-15	0.002445	1	0
DNAH6	1768	broad.mit.edu	37	2	84800703	84800703	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:84800703A>T	uc010fgb.2	+	12	2053	c.1916A>T	c.(1915-1917)CAG>CTG	p.Q639L	DNAH6_uc002soo.2_Missense_Mutation_p.Q218L|DNAH6_uc002sop.2_Missense_Mutation_p.Q218L	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	639	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						CTTAAACTTCAGGAACCTGGT	0.378			NA											16	130					0	0	0.006122	0	0
COX5B	1329	broad.mit.edu	37	2	98263846	98263846	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:98263846A>T	uc002sya.2	+	3	246	c.217A>T	c.(217-219)ACC>TCC	p.T73S		NM_001862	NP_001853	P10606	COX5B_HUMAN	cytochrome c oxidase subunit Vb precursor	73					respiratory electron transport chain|respiratory gaseous exchange	mitochondrial inner membrane	cytochrome-c oxidase activity|metal ion binding				0						AGCTTCAGGCACCAGGGAAGA	0.378			NA											25	221					0	0	0.004656	0	0
TSGA10	80705	broad.mit.edu	37	2	99634668	99634668	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:99634668T>C	uc002szg.3	-	18	2695	c.2067A>G	c.(2065-2067)TTA>TTG	p.L689L	TSGA10_uc002szh.3_Silent_p.L689L|TSGA10_uc002szi.3_Silent_p.L689L|TSGA10_uc010fin.1_Silent_p.L689L	NM_182911	NP_878915	Q9BZW7	TSG10_HUMAN	testis specific, 10	689	Interaction with HIF1A (By similarity).				spermatogenesis	cytoplasm|nuclear membrane				ovary(1)|central_nervous_system(1)	2						CTCACTCTTCTAATGATCGAT	0.378			NA											3	35					0	0	0.004672	0	0
EIF5B	9669	broad.mit.edu	37	2	99980853	99980853	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:99980853C>A	uc002tab.2	+	6	1441	c.1257C>A	c.(1255-1257)GCC>GCA	p.A419A		NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	419					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						GAGCCAGAGCCGAAGCTACTC	0.348	Colon(162;2388 2567 2705 3444)		NA											16	160					3.45872e-05	3.90465e-05	0.004007	1	0
REV1	51455	broad.mit.edu	37	2	100052327	100052327	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:100052327T>A	uc002tad.2	-	7	1502	c.1290A>T	c.(1288-1290)TCA>TCT	p.S430S	REV1_uc002tac.2_Silent_p.S430S	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	430	UmuC.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						GTATACCCACTGATACAAAGA	0.323			NA						DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					18	57					0	0	0.010504	0	0
GPR45	11250	broad.mit.edu	37	2	105859086	105859086	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:105859086G>T	uc002tco.1	+	1	887	c.771G>T	c.(769-771)GTG>GTT	p.V257V		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	257	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						AGGTCAGCGTGGACTTGAGCT	0.652			NA											28	193					3.80469e-20	5.78765e-20	0.009535	1	0
IL1F9	56300	broad.mit.edu	37	2	113742535	113742535	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:113742535T>A	uc002tio.1	+	5	488	c.419T>A	c.(418-420)ATT>AAT	p.I140N	IL1F9_uc010fkr.1_Missense_Mutation_p.I105N	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	140					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GACTGGTTCATTGCCTCCTCC	0.502	Esophageal Squamous(44;715 981 6239 42838 46707)		NA											50	68					0	0	0.00361	0	0
DDX18	8886	broad.mit.edu	37	2	118577319	118577319	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:118577319T>C	uc002tlh.1	+	3	564	c.465T>C	c.(463-465)GAT>GAC	p.D155D		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	155							ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						AGAAGCCAGATAATGATGAAG	0.413			NA									OREG0003814	type=REGULATORY REGION|Gene=DDX18|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	59					0	0	0.00308	0	0
PTPN4	5775	broad.mit.edu	37	2	120723086	120723086	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:120723086G>A	uc002tmf.1	+	25	3194	c.2423G>A	c.(2422-2424)CGT>CAT	p.R808H	PTPN4_uc010flj.1_Missense_Mutation_p.R521H|PTPN4_uc010yyr.1_Missense_Mutation_p.R441H	NM_002830	NP_002821	P29074	PTN4_HUMAN	protein tyrosine phosphatase, non-receptor type	808	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton|internal side of plasma membrane	cytoskeletal protein binding|non-membrane spanning protein tyrosine phosphatase activity			ovary(2)	2					Alendronate(DB00630)	AATGAAAGTCGTCCACTCACT	0.303			NA											9	82					0	0	0.006214	0	0
MYO7B	4648	broad.mit.edu	37	2	128338352	128338352	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:128338352C>A	uc002top.2	+	10	1088	c.1035C>A	c.(1033-1035)GAC>GAA	p.D345E		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	345	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		ACGCCTCAGACGTGATGGAGA	0.602			NA											10	15					1.58986e-06	1.85916e-06	0.008291	1	0
GPR17	2840	broad.mit.edu	37	2	128408648	128408648	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:128408648C>T	uc010yzn.1	+	4	1034	c.423C>T	c.(421-423)CTC>CTT	p.L141L	LIMS2_uc002tow.2_5'Flank|LIMS2_uc002tox.2_Intron|LIMS2_uc010fmb.2_Intron|LIMS2_uc002toy.2_Intron|LIMS2_uc010yzm.1_Intron|LIMS2_uc002tpa.2_Intron|LIMS2_uc002toz.2_Intron|LIMS2_uc002tpb.2_Intron|GPR17_uc002tpc.2_Silent_p.L141L|GPR17_uc010yzo.1_Silent_p.L113L|GPR17_uc002tpd.2_Silent_p.L113L	NM_001161415	NP_001154887	Q13304	GPR17_HUMAN	G protein-coupled receptor 17 isoform a	141	Helical; Name=3; (Potential).					integral to plasma membrane	chemokine receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	Colorectal(110;0.1)	Ovarian(717;0.15)		BRCA - Breast invasive adenocarcinoma(221;0.0677)		TCTTCTACCTCAACATGTACG	0.607			NA											10	114					0	0	0.008291	0	0
WDR33	55339	broad.mit.edu	37	2	128477639	128477639	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:128477639C>G	uc002tpg.1	-	16	2143	c.1960G>C	c.(1960-1962)GGA>CGA	p.G654R		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	654	Collagen-like.				postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CCCTGTGGTCCCATGAATCCT	0.642			NA											18	61					0	0	0.010504	0	0
LRP1B	53353	broad.mit.edu	37	2	141113955	141113955	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:141113955C>A	uc002tvj.1	-	75	12458	c.11486G>T	c.(11485-11487)TGT>TTT	p.C3829F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3829	Extracellular (Potential).|EGF-like 8.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCCAGGCTTACAGCGACAGAA	0.358	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			51	77					1.32667e-27	2.13576e-27	0.00361	1	0
LRP1B	53353	broad.mit.edu	37	2	141680576	141680576	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:141680576G>T	uc002tvj.1	-	21	4249	c.3277C>A	c.(3277-3279)CGA>AGA	p.R1093R	LRP1B_uc010fnl.1_Silent_p.R275R	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1093	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCACACAATCGTATGGTACCA	0.453	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			70	171					9.42754e-34	1.5549e-33	0.00361	1	0
LRP1B	53353	broad.mit.edu	37	2	141777508	141777508	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:141777508C>A	uc002tvj.1	-	12	2925	c.1953G>T	c.(1951-1953)GTG>GTT	p.V651V	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	651	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTGGATCCACCACAATTCCTC	0.343	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			40	82					1.00001e-27	1.61229e-27	0.009718	1	0
ZEB2	9839	broad.mit.edu	37	2	145156310	145156311	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:145156310_145156311GG>TT	uc002tvu.2	-	8	2923_2924	c.2443_2444CC>AA	c.(2443-2445)CCT>AAT	p.P815N	ZEB2_uc002tvv.2_Missense_Mutation_p.P809N|ZEB2_uc010zbm.1_Missense_Mutation_p.P786N|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.P844N	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	815						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		CAAGTCTAAAGGCTCAGCCTGG	0.386	Melanoma(33;1235 1264 5755 16332)		NA											57	112					0	0	0.004672	0	0
RIF1	55183	broad.mit.edu	37	2	152322272	152322272	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:152322272A>T	uc002txm.2	+	30	6368	c.6238A>T	c.(6238-6240)ATT>TTT	p.I2080F	RIF1_uc002txl.2_Missense_Mutation_p.I2080F|RIF1_uc002txn.2_Missense_Mutation_p.I2080F|RIF1_uc002txo.2_Missense_Mutation_p.I2080F|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	2080	Interaction with condensed chromosomes in telophase.				cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AGAAGGAATCATTGACGCTAA	0.333			NA											9	66					0	0	0.004482	0	0
NEB	4703	broad.mit.edu	37	2	152410462	152410462	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:152410462G>T	uc010fnx.2	-	98	14594	c.14403C>A	c.(14401-14403)GCC>GCA	p.A4801A	NEB_uc002txr.2_Silent_p.A1224A	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4801	Nebulin 131.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGGAATCCTTGGCAGTAACCA	0.463			NA											63	165					7.59065e-32	1.24242e-31	0.00361	1	0
NEB	4703	broad.mit.edu	37	2	152534675	152534675	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:152534675C>A	uc010fnx.2	-	33	3473	c.3282G>T	c.(3280-3282)AAG>AAT	p.K1094N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1094	Nebulin 26.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCCCTTTAGCCTTTTCATAGT	0.363			NA											4	46					0.00909568	0.00951997	0.009096	1	0
KCNJ3	3760	broad.mit.edu	37	2	155711814	155711814	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:155711814C>G	uc002tyv.1	+	3	1690	c.1495C>G	c.(1495-1497)CGC>GGC	p.R499G	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	499	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	GAACTCTGATCGCTTCACATA	0.408			NA											2	15					0	0	0.004672	0	0
LY75	4065	broad.mit.edu	37	2	160728993	160728993	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:160728993C>A	uc002ubc.3	-	13	2155	c.2086G>T	c.(2086-2088)GAA>TAA	p.E696*	LY75_uc002ubb.3_Nonsense_Mutation_p.E696*|LY75_uc010fos.2_Nonsense_Mutation_p.E696*|LY75_uc010fot.1_Nonsense_Mutation_p.E696*	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	696	Extracellular (Potential).|C-type lectin 4.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TGAAGAAATTCCTTTATTTCA	0.373			NA											15	179					0.000219431	0.00024066	0.00245	1	0
TBR1	10716	broad.mit.edu	37	2	162272897	162272897	+	Translation_Start_Site	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:162272897G>T	uc002ubw.1	+	1	278	c.-24G>T	c.(-26--22)GAGGG>GATGG		TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						AGGGACGGGAGGGCGAGTGTT	0.463			NA											12	177					0.00010058	0.00011133	0.001368	1	0
FAP	2191	broad.mit.edu	37	2	163070536	163070536	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:163070536C>A	uc002ucd.2	-	11	1122	c.914G>T	c.(913-915)TGT>TTT	p.C305F	FAP_uc010zct.1_Missense_Mutation_p.C280F|FAP_uc010fpd.2_Intron|FAP_uc010fpe.1_Missense_Mutation_p.C272F	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	305	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						CCACTGCAAACATACTCGTTC	0.408			NA											50	152					2.0833e-19	3.14246e-19	0.00361	1	0
SCN3A	6328	broad.mit.edu	37	2	165948857	165948857	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:165948857C>T	uc002ucx.2	-	27	5206	c.4714G>A	c.(4714-4716)GAA>AAA	p.E1572K	SCN3A_uc010zcy.1_Missense_Mutation_p.E55K|SCN3A_uc002ucy.2_Missense_Mutation_p.E1523K|SCN3A_uc002ucz.2_Missense_Mutation_p.E1523K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1572	Helical; Name=S2 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AGCACAAATTCTCCAGTGAAC	0.453			NA											11	134					0	0	0.000978	0	0
SCN2A	6326	broad.mit.edu	37	2	166168555	166168555	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:166168555G>T	uc002udc.2	+	8	1281	c.991G>T	c.(991-993)GGG>TGG	p.G331W	SCN2A_uc002udd.2_Missense_Mutation_p.G331W|SCN2A_uc002ude.2_Missense_Mutation_p.G331W	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	331	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TTTTTTAGAGGGGCAAAATGA	0.413			NA											6	55					8.12818e-05	9.0248e-05	0.001984	1	0
SCN2A	6326	broad.mit.edu	37	2	166210846	166210846	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:166210846C>A	uc002udc.2	+	17	3354	c.3064C>A	c.(3064-3066)CGT>AGT	p.R1022S	SCN2A_uc002udd.2_Missense_Mutation_p.R1022S|SCN2A_uc002ude.2_Missense_Mutation_p.R1022S	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1022					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AAGAAAAATACGTGAATTTAT	0.338			NA											36	239					9.8876e-21	1.51479e-20	0.004878	1	0
SCN1A	6323	broad.mit.edu	37	2	166903468	166903468	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:166903468T>A	uc010zcz.1	-	9	1207	c.1189A>T	c.(1189-1191)AAA>TAA	p.K397*	SCN1A_uc002udo.3_Nonsense_Mutation_p.K266*|SCN1A_uc010fpk.2_Nonsense_Mutation_p.K266*	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	397	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ATGTACGTTTTCCCAGCAGCA	0.368			NA											27	123					0	0	0.005443	0	0
XIRP2	129446	broad.mit.edu	37	2	168106557	168106557	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:168106557A>T	uc002udx.2	+	8	8673	c.8655A>T	c.(8653-8655)AAA>AAT	p.K2885N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.K2710N|XIRP2_uc010fpq.2_Missense_Mutation_p.K2663N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.K231N	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2710					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AACATAAAAAATTGCCCCAGC	0.378			NA											29	111					0	0	0.008361	0	0
ABCB11	8647	broad.mit.edu	37	2	169791861	169791861	+	Silent	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:169791861A>C	uc002ueo.1	-	23	3015	c.2889T>G	c.(2887-2889)CTT>CTG	p.L963L	ABCB11_uc010zda.1_Silent_p.L405L|ABCB11_uc010zdb.1_Silent_p.L439L	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	963	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GCTCAGTCTCAAGTGCTTCAA	0.438			NA											19	181					0	0	0.010504	0	0
LRP2	4036	broad.mit.edu	37	2	170048350	170048350	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:170048350C>G	uc002ues.2	-	48	9237	c.9024G>C	c.(9022-9024)AAG>AAC	p.K3008N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3008	LDL-receptor class A 23.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ACCTGAATATCTTTGGGATAC	0.363			NA											10	122					0	0	0.000978	0	0
KLHL23	151230	broad.mit.edu	37	2	170592412	170592412	+	Silent	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:170592412A>T	uc002ufh.1	+	4	1226	c.888A>T	c.(886-888)ACA>ACT	p.T296T	KLHL23_uc002ufi.1_Silent_p.T296T	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	296	Kelch 1.										0						ATCCTTTGACAAATGTTTGGA	0.423			NA											119	238					0	0	0.00361	0	0
GORASP2	26003	broad.mit.edu	37	2	171822343	171822343	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:171822343C>T	uc002ugk.2	+	10	1202	c.1062C>T	c.(1060-1062)GGC>GGT	p.G354G	GORASP2_uc002ugj.2_Silent_p.G286G|GORASP2_uc010zdl.1_Silent_p.G366G|GORASP2_uc010zdm.1_Silent_p.G310G|GORASP2_uc002ugl.2_Silent_p.G286G|GORASP2_uc002ugm.2_Silent_p.G136G	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	354	Pro-rich.					Golgi membrane				breast(1)|central_nervous_system(1)	2						ACTTACCTGGCATTGCACCTC	0.562			NA											13	161					0	0	0.003163	0	0
WIPF1	7456	broad.mit.edu	37	2	175440024	175440024	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:175440024C>T	uc002uiy.2	-	5	598	c.266G>A	c.(265-267)GGT>GAT	p.G89D	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.G89D|WIPF1_uc010fqt.1_Missense_Mutation_p.G89D|WIPF1_uc002ujc.1_Missense_Mutation_p.G89D|WIPF1_uc002uiz.2_Missense_Mutation_p.G89D|WIPF1_uc002ujb.1_Missense_Mutation_p.G89D|WIPF1_uc010zep.1_Missense_Mutation_p.G89D	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	89	Gly-rich.				actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						aaaacttccaccgcctccgcc	0.284			NA											17	161					0	0	0.00499	0	0
AGPS	8540	broad.mit.edu	37	2	178326701	178326701	+	Silent	SNP	C	C	T	rs146526791		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:178326701C>T	uc002ull.2	+	9	998	c.951C>T	c.(949-951)CGC>CGT	p.R317R	AGPS_uc010zfb.1_Silent_p.R227R	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	317	FAD-binding PCMH-type.				ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			TATCTACTCGCGCATCAGGCA	0.333			NA											11	106					0	0	0.000978	0	0
RBM45	129831	broad.mit.edu	37	2	178981037	178981037	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:178981037G>A	uc002ulv.2	+	2	441	c.349G>A	c.(349-351)GAT>AAT	p.D117N		NM_152945	NP_694453	Q8IUH3	RBM45_HUMAN	RNA binding motif protein 45	117					cell differentiation|nervous system development	cytoplasm|nucleus	nucleotide binding|RNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.00957)|all cancers(119;0.037)			AGATGTTGAAGATGAAGAACT	0.343			NA											20	225					0	0	0.002299	0	0
TTN	7273	broad.mit.edu	37	2	179416962	179416962	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:179416962A>T	uc010zfg.1	-	284	83185	c.82961T>A	c.(82960-82962)CTT>CAT	p.L27654H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.L21349H|TTN_uc010zfi.1_Missense_Mutation_p.L21282H|TTN_uc010zfj.1_Missense_Mutation_p.L21157H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28581							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTGGGCCAAGGGTGATGAC	0.433			NA											18	190					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179438511	179438511	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:179438511A>G	uc010zfg.1	-	275	64868	c.64644T>C	c.(64642-64644)AAT>AAC	p.N21548N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.N15243N|TTN_uc010zfi.1_Silent_p.N15176N|TTN_uc010zfj.1_Silent_p.N15051N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22475							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACTTTGACATTGAAAATGT	0.438			NA											9	142					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179455772	179455772	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:179455772C>A	uc010zfg.1	-	253	53200	c.52976G>T	c.(52975-52977)AGT>ATT	p.S17659I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S11354I|TTN_uc010zfi.1_Missense_Mutation_p.S11287I|TTN_uc010zfj.1_Missense_Mutation_p.S11162I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18586							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTGTCTTACTGCTTCCGGA	0.453			NA											21	327					1.28384e-07	1.56591e-07	0.001882	1	0
TTN	7273	broad.mit.edu	37	2	179489195	179489195	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:179489195C>A	uc010zfg.1	-	191	37332	c.37108G>T	c.(37108-37110)GTG>TTG	p.V12370L	TTN_uc010zfh.1_Missense_Mutation_p.V6065L|TTN_uc010zfi.1_Missense_Mutation_p.V5998L|TTN_uc010zfj.1_Missense_Mutation_p.V5873L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13297							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTTACGCACGACATTCAGG	0.363			NA											13	115					7.93312e-07	9.39931e-07	0.00245	1	0
TTN	7273	broad.mit.edu	37	2	179544998	179544998	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:179544998A>T	uc010zfg.1	-	136	29893	c.29669T>A	c.(29668-29670)GTA>GAA	p.V9890E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V6551E|TTN_uc010fre.1_Intron|TTN_uc002una.1_5'Flank|TTN_uc010frf.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10817							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTGGTGCTACTTCTTTTCT	0.378			NA											12	231					0	0	0.00245	0	0
TTN	7273	broad.mit.edu	37	2	179641550	179641551	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:179641550_179641551GG>TT	uc010zfg.1	-	28	5264_5265	c.5040_5041CC>AA	c.(5038-5043)CTCCAT>CTAAAT	p.H1681N	TTN_uc010zfh.1_Missense_Mutation_p.H1635N|TTN_uc010zfi.1_Missense_Mutation_p.H1635N|TTN_uc010zfj.1_Missense_Mutation_p.H1635N|TTN_uc002unb.2_Missense_Mutation_p.H1681N|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1681							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATCGCAAATGGAGGGGCTCCA	0.446			NA											10	191					0	0	0.004672	0	0
ITGA4	3676	broad.mit.edu	37	2	182347350	182347350	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:182347350G>T	uc002unu.2	+	9	1776	c.1013G>T	c.(1012-1014)AGA>ATA	p.R338I	ITGA4_uc010zfl.1_Missense_Mutation_p.R338I	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	338	FG-GAP 5.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GAGGAAGGAAGAGTGTTTGTG	0.473			NA											33	175					5.91797e-21	9.11824e-21	0.002445	1	0
ZSWIM2	151112	broad.mit.edu	37	2	187698691	187698691	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:187698691G>A	uc002upu.1	-	6	850	c.810C>T	c.(808-810)CAC>CAT	p.H270H		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	270	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			ATGTAAACGTGTGGGAAAGAT	0.358			NA											7	52					0	0	0.00308	0	0
TFPI	7035	broad.mit.edu	37	2	188331706	188331706	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:188331706C>A	uc002upx.2	-	8	905	c.872G>T	c.(871-873)AGA>ATA	p.R291I	TFPI_uc002upy.2_Missense_Mutation_p.R291I|TFPI_uc002upz.2_Missense_Mutation_p.R287I	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	291					blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	TATTTTCACTCTCTGCTTCTT	0.254			NA											3	16					0.004672	0.00490423	0.004672	1	0
COL3A1	1281	broad.mit.edu	37	2	189868724	189868724	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:189868724C>T	uc002uqj.1	+	39	2795	c.2678C>T	c.(2677-2679)CCA>CTA	p.P893L		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	893	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CCAGGACCCCCAGGTCCCAGC	0.438			NA											3	47					0	0	0.009096	0	0
COL3A1	1281	broad.mit.edu	37	2	189870139	189870139	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:189870139G>T	uc002uqj.1	+	41	3112	c.2995G>T	c.(2995-2997)GGT>TGT	p.G999C		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	999	Triple-helical region.		G -> R (in EDS4).		axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TGGACCCCAGGGTCTTCCTGG	0.458			NA											20	163					1.50039e-11	2.01738e-11	0.001882	1	0
MFSD6	54842	broad.mit.edu	37	2	191353516	191353516	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:191353516G>A	uc002urz.2	+	5	2088	c.1764G>A	c.(1762-1764)ATG>ATA	p.M588I	MFSD6_uc010zge.1_Missense_Mutation_p.M50I	NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	588	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(2)	2						GTGGTGCCATGATCGGAGGCG	0.443			NA											73	93					0	0	0.00361	0	0
DNAH7	56171	broad.mit.edu	37	2	196821991	196821991	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:196821991G>A	uc002utj.3	-	19	3173	c.3072C>T	c.(3070-3072)GTC>GTT	p.V1024V		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1024	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTACCTGCATGACACTTCTCA	0.368			NA											11	133					0	0	0.000978	0	0
SATB2	23314	broad.mit.edu	37	2	200245120	200245120	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:200245120C>A	uc002uuy.1	-	5	1381	c.564G>T	c.(562-564)CAG>CAT	p.Q188H	SATB2_uc010fsq.1_Intron|SATB2_uc002uuz.1_Missense_Mutation_p.Q188H|SATB2_uc002uva.1_Missense_Mutation_p.Q188H	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	188						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTAATGTGCTCTGGTTCATCT	0.498	Colon(30;262 767 11040 24421 36230)		NA											22	186					4.4004e-07	5.26581e-07	0.00333	1	0
NBEAL1	65065	broad.mit.edu	37	2	204001388	204001388	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:204001388G>A	uc002uzt.3	+	28	4702	c.4369G>A	c.(4369-4371)GAA>AAA	p.E1457K	NBEAL1_uc002uzs.3_Missense_Mutation_p.E167K	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1457							binding			ovary(1)|skin(1)	2						TAAGGGACTAGAAAAGTCTGA	0.338			NA											7	122					0	0	0.00308	0	0
CYP20A1	57404	broad.mit.edu	37	2	204116833	204116833	+	Splice_Site	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:204116833G>C	uc002uzv.3	+	4	1054	c.432_splice	c.e4+1	p.K144_splice	CYP20A1_uc002uzx.3_Splice_Site_p.K42_splice|CYP20A1_uc010zif.1_Splice_Site_p.K144_splice|CYP20A1_uc002uzy.3_Splice_Site_p.K42_splice|CYP20A1_uc002uzw.3_Splice_Site	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,							integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						CCTCCTAAAGGTAAGGTGATA	0.353			NA											7	100					0	0	0.00308	0	0
ABI2	10152	broad.mit.edu	37	2	204193298	204193298	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:204193298G>C	uc002vaa.2	+	1	296	c.61G>C	c.(61-63)GAC>CAC	p.D21H	ABI2_uc010zig.1_RNA|ABI2_uc002uzz.2_Missense_Mutation_p.D21H|ABI2_uc010zih.1_5'UTR|ABI2_uc010zii.1_Missense_Mutation_p.D21H|ABI2_uc010zij.1_5'UTR	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	21					actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						GGCCCTCTTCGACAGCTACAC	0.453			NA											3	42					0	0	0.004672	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208795744	208795744	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:208795744G>A	uc002vcl.2	-	5	2282	c.1792C>T	c.(1792-1794)CTG>TTG	p.L598L	PLEKHM3_uc002vcm.2_Silent_p.L598L	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	598					intracellular signal transduction		metal ion binding			ovary(1)	1						ACGGCGGCCAGCGGCTCTGCG	0.637			NA											37	76					0	0	0.00361	0	0
PTH2R	5746	broad.mit.edu	37	2	209271772	209271772	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:209271772G>C	uc002vdb.2	+	1	217	c.4G>C	c.(4-6)GCC>CCC	p.A2P	PTH2R_uc010zjb.1_Intron	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	2						integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TCCGGGCATGGCCGGGCTGGG	0.647			NA											82	205					0	0	0.00361	0	0
PTH2R	5746	broad.mit.edu	37	2	209345847	209345847	+	Missense_Mutation	SNP	G	G	T	rs151296979		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:209345847G>T	uc002vdb.2	+	10	1247	c.1034G>T	c.(1033-1035)TGG>TTG	p.W345L	PTH2R_uc010zjb.1_Missense_Mutation_p.W356L	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	345	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		ACCAAAATCTGGGAGACCAAT	0.343			NA											17	85					1.9806e-07	2.40757e-07	0.002299	1	0
CPS1	1373	broad.mit.edu	37	2	211476856	211476856	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:211476856C>A	uc002vee.3	+	20	2539	c.2407C>A	c.(2407-2409)CGT>AGT	p.R803S	CPS1_uc010fur.2_Missense_Mutation_p.R809S|CPS1_uc010fus.2_Missense_Mutation_p.R352S	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	803					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GGCTATTGGTCGTACCTTTGA	0.383			NA											33	229					8.73648e-17	1.28717e-16	0.004289	1	0
CPS1	1373	broad.mit.edu	37	2	211518747	211518747	+	Splice_Site	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:211518747A>T	uc002vee.3	+	29	3613	c.3481_splice	c.e29-2	p.E1161_splice	CPS1_uc010fur.2_Splice_Site_p.E1167_splice|CPS1_uc010fus.2_Splice_Site_p.E710_splice	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b						carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CCTTCGTGACAGGAGCACCCA	0.423			NA											7	68					0	0	0.004482	0	0
TNS1	7145	broad.mit.edu	37	2	218713154	218713154	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:218713154G>A	uc002vgt.2	-	17	2109	c.1711C>T	c.(1711-1713)CAT>TAT	p.H571Y	TNS1_uc002vgr.2_Missense_Mutation_p.H571Y|TNS1_uc002vgs.2_Missense_Mutation_p.H571Y|TNS1_uc010zjv.1_Missense_Mutation_p.H571Y|TNS1_uc010fvj.1_Missense_Mutation_p.H639Y|TNS1_uc010fvk.1_Missense_Mutation_p.H696Y|TNS1_uc010fvi.1_Missense_Mutation_p.H258Y	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	571						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TGGCCAGCATGGGCAGGCCCC	0.667			NA											23	40					0	0	0.005524	0	0
RHBDD1	84236	broad.mit.edu	37	2	227779021	227779021	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:227779021A>T	uc002voi.2	+	6	931	c.810A>T	c.(808-810)GAA>GAT	p.E270D	RHBDD1_uc010fxc.2_Missense_Mutation_p.E270D|RHBDD1_uc002voj.2_Missense_Mutation_p.E101D	NM_032276	NP_115652	Q8TEB9	RHBD1_HUMAN	rhomboid domain containing 1	270						integral to membrane	serine-type endopeptidase activity			ovary(1)	1		Renal(207;0.023)|all_lung(227;0.13)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;1.47e-11)|all cancers(144;1.52e-08)|Lung(261;0.0128)|LUSC - Lung squamous cell carcinoma(224;0.0175)		GACTGAGTGAAGAAGAACAGC	0.488			NA											18	21					0	0	0.007413	0	0
ALPPL2	251	broad.mit.edu	37	2	233272591	233272591	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:233272591A>C	uc002vss.3	+	5	565	c.512A>C	c.(511-513)CAG>CCG	p.Q171P		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	171					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	ACACGGGTGCAGCATGCCTCG	0.652			NA											7	51					0	0	0.001984	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627526	234627526	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:234627526C>T	uc002vux.2	+	1	89	c.60C>T	c.(58-60)CTC>CTT	p.L20L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Silent_p.L20L	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	20					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	TGCTCCTCCTCAGTGTCCAGC	0.657	Melanoma(99;1011 1962 13201 26492)		NA									OREG0003834	type=REGULATORY REGION|Gene=UGT1A4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	39					0	0	0.008291	0	0
PASK	23178	broad.mit.edu	37	2	242066278	242066278	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:242066278C>A	uc002wao.1	-	10	2144	c.2052G>T	c.(2050-2052)CCG>CCT	p.P684P	PASK_uc010zol.1_Silent_p.P498P|PASK_uc010zom.1_Silent_p.P649P|PASK_uc010fzl.1_Silent_p.P684P|PASK_uc010zon.1_Silent_p.P465P|PASK_uc002wap.2_Silent_p.P227P|PASK_uc002waq.2_Silent_p.P684P	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	684					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GGCACTCTGTCGGAACGAGTT	0.617			NA											30	261					1.42033e-22	2.22988e-22	0.004289	1	0
ATG4B	23192	broad.mit.edu	37	2	242607954	242607955	+	Splice_Site	DNP	GG	GG	CT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:242607954_242607955GG>CT	uc002wbv.2	+	10	915	c.812_splice	c.e10-1	p.G271_splice	ATG4B_uc002wbu.2_Splice_Site_p.G197_splice|ATG4B_uc002wbw.2_Splice_Site_p.G271_splice|ATG4B_uc010zox.1_Splice_Site_p.G257_splice|ATG4B_uc010zoy.1_Splice_Site_p.G197_splice|ATG4B_uc010fzp.2_Splice_Site_p.G271_splice|ATG4B_uc010zoz.1_Splice_Site_p.G197_splice|ATG4B_uc002wby.2_Missense_Mutation_p.G24L	NM_013325	NP_037457	Q9Y4P1	ATG4B_HUMAN	APG4 autophagy 4 homolog B isoform a						autophagic vacuole assembly|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.44e-33)|all cancers(36;5.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.75e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0848)		CATCCTCCCAGGTGAGGAGCTC	0.649	Melanoma(78;458 1323 6342 12171 39523)		NA											9	7					0	0	0.004672	0	0
SIRPG	55423	broad.mit.edu	37	20	1616967	1616967	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:1616967G>T	uc002wfm.1	-	3	680	c.615C>A	c.(613-615)TAC>TAA	p.Y205*	SIRPG_uc002wfn.1_Nonsense_Mutation_p.Y205*|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	205	Extracellular (Potential).|Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TGCGGATGCTGTAGGCCACAC	0.582			NA											28	57					3.03874e-20	4.62903e-20	0.003271	1	0
TMC2	117532	broad.mit.edu	37	20	2592925	2592925	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:2592925G>T	uc002wgf.1	+	13	1697	c.1682G>T	c.(1681-1683)CGA>CTA	p.R561L	TMC2_uc002wgg.1_Missense_Mutation_p.R545L|TMC2_uc010zpw.1_Missense_Mutation_p.R393L|TMC2_uc010zpx.1_Missense_Mutation_p.R392L	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	561	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						AGTGTCCCCCGACCACCCCTG	0.493			NA											22	150					1.50039e-11	2.01738e-11	0.001882	1	0
CHGB	1114	broad.mit.edu	37	20	5903186	5903186	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:5903186G>A	uc002wmg.2	+	4	702	c.396G>A	c.(394-396)GAG>GAA	p.E132E	CHGB_uc010zqz.1_Intron	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	132						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						ACAGCCGAGAGCGAGCGGATG	0.612			NA											4	4					0	0	0.004482	0	0
PLCB1	23236	broad.mit.edu	37	20	8630054	8630054	+	Silent	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:8630054A>T	uc002wnb.2	+	7	555	c.552A>T	c.(550-552)CGA>CGT	p.R184R	PLCB1_uc010zrb.1_Silent_p.R83R|PLCB1_uc010gbv.1_Silent_p.R184R|PLCB1_uc002wmz.1_Silent_p.R184R|PLCB1_uc002wna.2_Silent_p.R184R|PLCB1_uc002wnc.1_Silent_p.R83R	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	184					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ATCGGAAGCGAGTTGAAACTG	0.338			NA											6	68					0	0	0.00308	0	0
PAK7	57144	broad.mit.edu	37	20	9546647	9546647	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:9546647A>T	uc002wnl.2	-	6	1920	c.1375T>A	c.(1375-1377)TCA>ACA	p.S459T	PAK7_uc002wnk.2_Missense_Mutation_p.S459T|PAK7_uc002wnj.2_Missense_Mutation_p.S459T|PAK7_uc010gby.1_Missense_Mutation_p.S459T	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	459	Protein kinase.|ATP (By similarity).						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ATGCCGGTTGAGCCTTCCCCG	0.542			NA											94	198					0	0	0.00361	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18123564	18123564	+	Splice_Site	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:18123564G>T	uc002wqj.2	+	2	881	c.259_splice	c.e2+1	p.S87_splice	CSRP2BP_uc002wqk.2_5'Flank	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein						histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						ATACCAGCCAGTAAGGAGCTT	0.428			NA											4	12					0.000151284	0.000167111	0.001855	1	0
GZF1	64412	broad.mit.edu	37	20	23350848	23350848	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:23350848G>C	uc010gdb.2	+	7	2080	c.1906G>C	c.(1906-1908)GAT>CAT	p.D636H	GZF1_uc002wsy.2_Missense_Mutation_p.D636H|GZF1_uc010zsq.1_Missense_Mutation_p.D160H|GZF1_uc010zsr.1_Missense_Mutation_p.D145H|GZF1_uc002wsz.2_Missense_Mutation_p.D636H	NM_022482	NP_071927	Q9H116	GZF1_HUMAN	GDNF-inducible zinc finger protein 1	636					transcription, DNA-dependent	nucleolus|nucleoplasm	sequence-specific DNA binding|zinc ion binding			kidney(1)	1	Lung NSC(19;0.0605)|Colorectal(13;0.0993)|all_lung(19;0.135)					CAAGCTTTCGGATAAATTGCT	0.478			NA											10	76					0	0	0.006214	0	0
NINL	22981	broad.mit.edu	37	20	25481599	25481599	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:25481599C>G	uc002wux.1	-	8	983	c.909G>C	c.(907-909)GTG>GTC	p.V303V	NINL_uc010gdn.1_Silent_p.V303V|NINL_uc010gdo.1_Intron|NINL_uc010ztf.1_Silent_p.V319V	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	303				V -> L (in Ref. 5; BAH11644).	G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						AGCACAGGGACACGAGGGATG	0.602			NA											12	17					0	0	0.00245	0	0
HCK	3055	broad.mit.edu	37	20	30676371	30676371	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:30676371G>A	uc002wxh.2	+	10	1187	c.1016G>A	c.(1015-1017)GGA>GAA	p.G339E	HCK_uc010gdy.2_Missense_Mutation_p.G318E|HCK_uc002wxi.2_Missense_Mutation_p.G317E	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	339	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CCCCATATAGGAAGCTTGCTG	0.378			NA											6	58					0	0	0.001984	0	0
BPI	671	broad.mit.edu	37	20	36936026	36936026	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:36936026A>G	uc002xib.2	+	2	262	c.200A>G	c.(199-201)GAC>GGC	p.D67G		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	67					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				AAGATTCCTGACTACTCAGAC	0.537			NA											17	164					0	0	0.007413	0	0
PTPRT	11122	broad.mit.edu	37	20	40747085	40747085	+	Silent	SNP	G	G	T	rs34284587		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:40747085G>T	uc002xkg.2	-	21	3124	c.2940C>A	c.(2938-2940)TCC>TCA	p.S980S	PTPRT_uc010ggj.2_Silent_p.S999S|PTPRT_uc010ggi.2_Silent_p.S183S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	980	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CGATGCTGGCGGAGTTCTCCT	0.537			NA											14	60					6.31663e-08	7.78376e-08	0.003163	1	0
MMP9	4318	broad.mit.edu	37	20	44637694	44637694	+	Missense_Mutation	SNP	G	G	C	rs142807270		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:44637694G>C	uc002xqz.2	+	1	148	c.129G>C	c.(127-129)CAG>CAC	p.Q43H		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	43					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	CCGACAGGCAGCTGGCAGAGG	0.607			NA											7	24					0	0	0.00308	0	0
SLC12A5	57468	broad.mit.edu	37	20	44664168	44664168	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:44664168G>T	uc010zxl.1	+	3	418	c.342G>T	c.(340-342)CCG>CCT	p.P114P	SLC12A5_uc002xra.2_Silent_p.P91P|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Silent_p.P91P	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	114	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity	p.V114I(1)		ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	AAAAGAAGCCGGTGCAGGTGA	0.338			NA											44	42					4.10826e-27	6.59403e-27	0.00361	1	0
CDH22	64405	broad.mit.edu	37	20	44815276	44815276	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:44815276C>T	uc002xrm.2	-	9	2015	c.1614G>A	c.(1612-1614)CTG>CTA	p.L538L	CDH22_uc010ghk.1_Silent_p.L538L	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	538	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CTTCAGGCACCAGGCGGAAAT	0.592			NA											9	112					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	20	56063760	56063760	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:56063760C>A	uc010zzl.1	-	1	324	c.324G>T	c.(322-324)GAG>GAT	p.E108D		NM_001008735	NP_001008735			high-mobility group box 1-like 1												NA						TTGGGTGATACTCAGAGCAGA	0.478			NA											15	119					2.61681e-11	3.49233e-11	0.00245	1	0
TUBB1	81027	broad.mit.edu	37	20	57599398	57599399	+	Missense_Mutation	DNP	CG	CG	GT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:57599398_57599399CG>GT	uc002yak.2	+	4	1185_1186	c.916_917CG>GT	c.(916-918)CGC>GTC	p.R306V		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	306					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	CTGTGACCTCCGCCGTGGCCGC	0.634			NA											4	18					0	0	0.004672	0	0
ZNF831	128611	broad.mit.edu	37	20	57769383	57769383	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:57769383G>T	uc002yan.2	+	1	3309	c.3309G>T	c.(3307-3309)CTG>CTT	p.L1103L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1103						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ACTGGGAGCTGGGGGAGCCTC	0.652			NA											13	71					3.27435e-08	4.07685e-08	0.00245	1	0
MYT1	4661	broad.mit.edu	37	20	62836921	62836921	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:62836921C>A	uc002yii.2	+	6	529	c.165C>A	c.(163-165)CCC>CCA	p.P55P	MYT1_uc002yih.2_Silent_p.P55P|MYT1_uc002yij.2_5'Flank	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	55					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AGAGCTGCCCCCTGGCCAAGA	0.642	GBM(59;481 1041 20555 21139 33705)		NA											26	75					1.74807e-11	2.34163e-11	0.002096	1	0
GABPA	2551	broad.mit.edu	37	21	27141328	27141328	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr21:27141328G>T	uc002ylx.3	+	10	1677	c.1150G>T	c.(1150-1152)GGG>TGG	p.G384W	GABPA_uc002yly.3_Missense_Mutation_p.G384W	NM_002040	NP_002031	Q06546	GABPA_HUMAN	GA binding protein transcription factor, alpha	384	ETS.				positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)|central_nervous_system(1)	2						TTATTACGATGGGGACATGAT	0.343			NA											19	118					1.01871e-10	1.33636e-10	0.008871	1	0
APP	351	broad.mit.edu	37	21	27354704	27354704	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr21:27354704T>C	uc002ylz.2	-	9	1377	c.1177A>G	c.(1177-1179)AAA>GAA	p.K393E	APP_uc010glk.2_Missense_Mutation_p.K369E|APP_uc002yma.2_Missense_Mutation_p.K374E|APP_uc011ach.1_Missense_Mutation_p.K337E|APP_uc002ymb.2_Missense_Mutation_p.K318E|APP_uc010glj.2_Missense_Mutation_p.K262E|APP_uc011aci.1_Missense_Mutation_p.K283E	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	393	Extracellular (Potential).|Heparin-binding.				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				TCTTTGGCTTTCTGGAAATGG	0.493			NA											4	53					0	0	0.001168	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28302316	28302316	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr21:28302316C>A	uc002ymg.2	-	7	2843	c.2114G>T	c.(2113-2115)AGA>ATA	p.R705I		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	705	Cys-rich.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						ACAGCCAGTTCTCACACACTT	0.493	Esophageal Squamous(53;683 1080 10100 14424 45938)		NA											18	211					2.4624e-09	3.16091e-09	0.008871	1	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253398	32253398	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr21:32253398C>T	uc002yov.2	-	1	477	c.446G>A	c.(445-447)AGG>AAG	p.R149K		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	149	4.|4 X 10 AA approximate repeats.					keratin filament	structural molecule activity			pancreas(1)	1						CTGATACGTCCTGGAGACCCC	0.587			NA											8	67					0	0	0.00245	0	0
SON	6651	broad.mit.edu	37	21	34923708	34923708	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr21:34923708A>G	uc002yse.1	+	3	2220	c.2171A>G	c.(2170-2172)CAT>CGT	p.H724R	SON_uc002ysb.1_Missense_Mutation_p.H724R|SON_uc002ysc.2_Missense_Mutation_p.H724R|SON_uc002ysd.2_Intron|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	724					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						ATGGAGACCCATATATTAGCA	0.493			NA											16	162					0	0	0.00499	0	0
MRPS6	64968	broad.mit.edu	37	21	35514856	35514856	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr21:35514856C>T	uc002ytp.2	+	3	512	c.334C>T	c.(334-336)CCA>TCA	p.P112S		NM_032476	NP_115865	P82932	RT06_HUMAN	mitochondrial ribosomal protein S6	112					translation	mitochondrion|small ribosomal subunit	rRNA binding|structural constituent of ribosome			skin(1)	1						TGTCCCAGTCCCACTCGCAGA	0.423			NA											8	105					0	0	0.00308	0	0
POTEH	23784	broad.mit.edu	37	22	16287898	16287898	+	Translation_Start_Site	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:16287898G>T	uc010gqp.2	-	1	40	c.-12C>A	c.(-14--10)GGCTG>GGATG		POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_Translation_Start_Site	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3											skin(1)	1						GCTTTTAACAGCCAGGGAAGG	0.532			NA											32	60					3.76525e-18	5.62437e-18	0.00361	1	0
CCT8L2	150160	broad.mit.edu	37	22	17073111	17073111	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:17073111C>T	uc002zlp.1	-	1	590	c.330G>A	c.(328-330)CTG>CTA	p.L110L		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	110					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CTTCCGTCAGCAGAACCACGA	0.662			NA											12	48					0	0	0.001855	0	0
C22orf25	128989	broad.mit.edu	37	22	20040998	20040998	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:20040998A>T	uc010grw.1	+	6	641	c.304A>T	c.(304-306)AGC>TGC	p.S102C	C22orf25_uc002zrb.1_Intron|C22orf25_uc002zrc.1_Missense_Mutation_p.S102C|C22orf25_uc002zrd.1_Missense_Mutation_p.S68C|C22orf25_uc002zre.2_Missense_Mutation_p.S102C|C22orf25_uc010grx.2_Intron|C22orf25_uc011ahe.1_Intron|C22orf25_uc011ahf.1_Intron|C22orf25_uc011ahg.1_Missense_Mutation_p.S143C|C22orf25_uc002zrg.2_Missense_Mutation_p.S143C|C22orf25_uc011ahh.1_Missense_Mutation_p.S102C|C22orf25_uc002zrf.2_Intron|C22orf25_uc011ahi.1_Intron|C22orf25_uc010gry.1_Intron|C22orf25_uc002zrh.1_Intron	NM_152906	NP_690870	Q6ICL3	CV025_HUMAN	hypothetical protein LOC128989	102											0	Colorectal(54;0.0533)					TGACGTGGACAGCTTGTCCTA	0.562			NA											7	77					0	0	0.00308	0	0
SMTN	6525	broad.mit.edu	37	22	31484540	31484540	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:31484540G>T	uc003ajl.1	+	4	460	c.242G>T	c.(241-243)CGG>CTG	p.R81L	SMTN_uc003ajk.1_Missense_Mutation_p.R81L|SMTN_uc003ajm.1_Missense_Mutation_p.R81L|SMTN_uc011ale.1_Missense_Mutation_p.R135L|SMTN_uc011alf.1_Missense_Mutation_p.R137L|SMTN_uc003ajn.1_Missense_Mutation_p.R73L|SMTN_uc011alg.1_5'Flank	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	81	Potential.				muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						GCCCTGGCACGGCTGGCAGGG	0.642			NA											30	151					3.93418e-24	6.24943e-24	0.004289	1	0
BPIL2	254240	broad.mit.edu	37	22	32841622	32841622	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:32841622C>A	uc003amn.2	-	5	594	c.594G>T	c.(592-594)ATG>ATT	p.M198I	BPIL2_uc010gwo.2_Missense_Mutation_p.M12I|BPIL2_uc011amb.1_Intron	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	198						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						AAAGACTCACCATTTCATTTA	0.254			NA											14	246					0.000566183	0.000612844	0.00499	1	0
HMOX1	3162	broad.mit.edu	37	22	35783020	35783020	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:35783020G>C	uc003ant.1	+	3	567	c.487G>C	c.(487-489)GGC>CGC	p.G163R		NM_002133	NP_002124	P09601	HMOX1_HUMAN	heme oxygenase (decyclizing) 1	163					angiogenesis|anti-apoptosis|cell death|cellular iron ion homeostasis|endothelial cell proliferation|erythrocyte homeostasis|heme catabolic process|heme oxidation|intracellular protein kinase cascade|low-density lipoprotein particle clearance|negative regulation of leukocyte migration|negative regulation of smooth muscle cell proliferation|positive regulation of chemokine biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of smooth muscle cell proliferation|protein homooligomerization|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hydrogen peroxide|response to nicotine|smooth muscle hyperplasia|transmembrane transport|wound healing involved in inflammatory response	endoplasmic reticulum membrane|extracellular space|microsome	enzyme binding|heme binding|heme oxygenase (decyclizing) activity|protein homodimerization activity|signal transducer activity			ovary(1)	1					NADH(DB00157)	CTCTGGCGAGGGCCTGGCCTT	0.622			NA											9	95					0	0	0.006214	0	0
RBM9	23543	broad.mit.edu	37	22	36177704	36177704	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:36177704C>G	uc003aon.3	-	4	664	c.552G>C	c.(550-552)CTG>CTC	p.L184L	RBM9_uc003aog.3_Silent_p.L94L|RBM9_uc003aol.3_Silent_p.L113L|RBM9_uc003aoj.3_Silent_p.L113L|RBM9_uc003aok.3_Silent_p.L114L|RBM9_uc003aoh.3_Silent_p.L113L|RBM9_uc003aom.3_Silent_p.L113L|RBM9_uc010gwu.2_Silent_p.L93L|RBM9_uc003aoo.3_Silent_p.L183L|RBM9_uc003aop.3_Silent_p.L113L	NM_001082578	NP_001076047	O43251	RFOX2_HUMAN	RNA binding motif protein 9 isoform 5	123	RRM.				estrogen receptor signaling pathway|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of cell proliferation|RNA splicing	cytoplasm|nucleus	nucleotide binding|RNA binding|transcription corepressor activity|transcription factor binding				0						TAGAGACATGCAGCCGTTTCG	0.458			NA											74	237					0	0	0.00361	0	0
MYH9	4627	broad.mit.edu	37	22	36691697	36691697	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:36691697G>T	uc003apg.2	-	26	3570	c.3339C>A	c.(3337-3339)ATC>ATA	p.I1113I		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1113	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GGAGTTCAGAGATCTGAGATT	0.522			NA	T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				9	36					0.000274275	0.000298378	0.004482	1	0
ACO2	50	broad.mit.edu	37	22	41923336	41923336	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:41923336C>A	uc003bac.2	+	16	2020	c.1998C>A	c.(1996-1998)GGC>GGA	p.G666G	ACO2_uc003bad.2_Silent_p.G691G|POLR3H_uc003bae.2_RNA|POLR3H_uc003baf.2_3'UTR|POLR3H_uc003bag.2_3'UTR|POLR3H_uc003bai.2_3'UTR	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	666					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						AGAACTACGGCGAGGGCTCGA	0.622			NA									OREG0026589	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	56					0.00448238	0.00471438	0.004482	1	0
CNTN6	27255	broad.mit.edu	37	3	1445042	1445042	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:1445042C>A	uc003boz.2	+	23	3294	c.3027C>A	c.(3025-3027)ACC>ACA	p.T1009T	CNTN6_uc011asj.1_Silent_p.T937T|CNTN6_uc003bpa.2_Silent_p.T1009T	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	1009					axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AACCTAGCACCCATTTTCTTT	0.299			NA											6	28					0.00448238	0.00471438	0.004482	1	0
CNTN4	152330	broad.mit.edu	37	3	3078979	3078979	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:3078979C>A	uc003bpc.2	+	17	2280	c.2059C>A	c.(2059-2061)CGC>AGC	p.R687S	CNTN4_uc003bpb.1_Missense_Mutation_p.R358S|CNTN4_uc003bpd.1_Missense_Mutation_p.R687S|CNTN4_uc003bpe.2_Missense_Mutation_p.R359S|CNTN4_uc003bpf.2_Missense_Mutation_p.R358S|CNTN4_uc003bpg.2_5'Flank	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	687	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GGAGCCCAGCCGCCCCTCAGA	0.522			NA											38	274					3.09479e-21	4.78892e-21	0.006999	1	0
ATP2B2	491	broad.mit.edu	37	3	10417183	10417183	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:10417183C>A	uc003bvt.2	-	11	1786	c.1347G>T	c.(1345-1347)ACG>ACT	p.T449T	ATP2B2_uc003bvv.2_Silent_p.T404T|ATP2B2_uc003bvw.2_Silent_p.T404T|ATP2B2_uc010hdo.2_Silent_p.T154T	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	449	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCACCAGCACCGTCACGCCAA	0.612	Ovarian(125;1619 1709 15675 19819 38835)		NA											22	85					2.32416e-17	3.44308e-17	0.002299	1	0
NUP210	23225	broad.mit.edu	37	3	13427867	13427867	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:13427867T>G	uc003bxv.1	-	6	808	c.725A>C	c.(724-726)AAC>ACC	p.N242T		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	242	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CAGAAGGATGTTTTCCAAAAT	0.498			NA											8	113					0	0	0.008291	0	0
GRIP2	80852	broad.mit.edu	37	3	14564532	14564532	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:14564532C>T	uc011avi.1	-	7	832	c.832G>A	c.(832-834)GTG>ATG	p.V278M	GRIP2_uc011avh.1_Translation_Start_Site|GRIP2_uc003byu.1_3'UTR|GRIP2_uc003byv.1_3'UTR	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	181	PDZ 2.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						CCGGGCCGCACGTAGGTCAGG	0.517			NA											7	85					0	0	0.000978	0	0
EFHB	151651	broad.mit.edu	37	3	19975080	19975080	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:19975080C>A	uc003cbl.3	-	1	627	c.431G>T	c.(430-432)AGA>ATA	p.R144I	EFHB_uc003cbm.2_Intron	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	144					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						CAAAGGAGCTCTCCTGCTCCC	0.488			NA											22	96					5.35356e-11	7.05726e-11	0.00278	1	0
GADL1	339896	broad.mit.edu	37	3	30891521	30891521	+	Silent	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:30891521A>C	uc003cep.2	-	6	665	c.618T>G	c.(616-618)GGT>GGG	p.G206G	GADL1_uc003ceq.1_Silent_p.G206G	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	206					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	ATCTTGGCGAACCAGACAGCC	0.333			NA											9	74					0	0	0.008291	0	0
C3orf35	339883	broad.mit.edu	37	3	37458897	37458897	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:37458897G>T	uc003cha.3	+	5	804	c.140G>T	c.(139-141)AGA>ATA	p.R47I	C3orf35_uc003chb.2_Missense_Mutation_p.R47I	NM_178339	NP_848029	Q8IVJ8	APRG1_HUMAN	AP20 region protein isoform B	47						integral to membrane				central_nervous_system(1)	1						ATAATAAACAGAGGAAGGCGG	0.468			NA											28	121					9.65021e-13	1.33247e-12	0.002096	1	0
SCN10A	6336	broad.mit.edu	37	3	38766748	38766748	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:38766748C>A	uc003ciq.2	-	17	3145	c.3145G>T	c.(3145-3147)GGC>TGC	p.G1049C		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1049					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GTTCCAGTGCCTGGGCTCCTG	0.597			NA											7	39					5.4927e-09	6.98423e-09	0.004482	1	0
EIF1B	10289	broad.mit.edu	37	3	40352459	40352459	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:40352459A>T	uc003ckc.2	+	2	367	c.107A>T	c.(106-108)CAG>CTG	p.Q36L	uc003ckb.2_5'Flank	NM_005875	NP_005866	O60739	EIF1B_HUMAN	translation factor sui1 homolog	36					regulation of translational initiation		protein binding|translation initiation factor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		ATAAGAATCCAGCAACGGAAC	0.408			NA											13	78					0	0	0.00245	0	0
TGM4	7047	broad.mit.edu	37	3	44943063	44943063	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:44943063G>T	uc003coc.3	+	7	778	c.705G>T	c.(703-705)GGG>GGT	p.G235G	TGM4_uc003cob.2_RNA	NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	235					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	ATTGGACTGGGGACTACGAAG	0.582			NA											4	31					0.000602214	0.000649234	0.000602	1	0
COL7A1	1294	broad.mit.edu	37	3	48603953	48603953	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:48603953G>T	uc003ctz.2	-	112	8349	c.8348C>A	c.(8347-8349)GCT>GAT	p.A2783D	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2783	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGTCAGTGCAGCTTCTCCCTT	0.483			NA											6	89					2.52707e-12	3.46707e-12	0.006214	1	0
COL7A1	1294	broad.mit.edu	37	3	48613683	48613683	+	Missense_Mutation	SNP	G	G	T	rs149267939	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:48613683G>T	uc003ctz.2	-	70	5820	c.5819C>A	c.(5818-5820)CCG>CAG	p.P1940Q		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1940	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTGGCTCACCGGCACACTTCC	0.597			NA											6	49					3.59834e-05	4.03688e-05	0.001168	1	0
BSN	8927	broad.mit.edu	37	3	49694957	49694957	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:49694957C>T	uc003cxe.3	+	5	8082	c.7968C>T	c.(7966-7968)GCC>GCT	p.A2656A		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2656					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GTGCTGCTGCCACTGTGAGGG	0.637			NA											10	26					0	0	0.001368	0	0
GLYCTK	132158	broad.mit.edu	37	3	52324424	52324424	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:52324424G>T	uc003ddo.2	+	2	162	c.66G>T	c.(64-66)CGG>CGT	p.R22R	GLYCTK_uc003ddq.2_Silent_p.R22R|GLYCTK_uc003ddm.2_Intron|GLYCTK_uc003ddn.2_RNA|GLYCTK_uc003ddp.1_Silent_p.R22R|GLYCTK_uc003ddr.2_5'Flank	NM_145262	NP_660305	Q8IVS8	GLCTK_HUMAN	glycerate kinase isoform 1	22					protein phosphorylation	Golgi apparatus|mitochondrion	ATP binding|glycerate kinase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;3.56e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)|OV - Ovarian serous cystadenocarcinoma(275;0.235)		TCCTCTGGCGGGGCTCAGTGG	0.687			NA											4	17					0.00198382	0.00210086	0.001984	1	0
LRTM1	57408	broad.mit.edu	37	3	54958983	54958983	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:54958983C>A	uc003dhl.2	-	2	401	c.267G>T	c.(265-267)CTG>CTT	p.L89L	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	89	Extracellular (Potential).|LRR 2.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CTCCAGGGGCCAGATTTGAAA	0.443			NA											6	61					5.9392e-07	7.07579e-07	0.001168	1	0
CNTN3	5067	broad.mit.edu	37	3	74420485	74420485	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:74420485C>T	uc003dpm.1	-	5	600	c.520G>A	c.(520-522)GTC>ATC	p.V174I		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	174	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TCCTGGGAGACAAATCTCCGA	0.418			NA											4	56					0	0	0.000602	0	0
CNTN3	5067	broad.mit.edu	37	3	74535768	74535768	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:74535768C>A	uc003dpm.1	-	3	277	c.197G>T	c.(196-198)GGA>GTA	p.G66V		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	66	Ig-like C2-type 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AATATCACTTCCATTCAGCTG	0.338			NA											13	71					0.000219431	0.00024066	0.00245	1	0
EPHA3	2042	broad.mit.edu	37	3	89498500	89498500	+	Silent	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:89498500A>T	uc003dqy.2	+	14	2697	c.2472A>T	c.(2470-2472)CCA>CCT	p.P824P	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	824	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GAGAGAGACCATACTGGGAGA	0.438			NA								TSP Lung(6;0.00050)			25	193					0	0	0.005443	0	0
OR5K2	402135	broad.mit.edu	37	3	98217148	98217148	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:98217148C>A	uc011bgx.1	+	1	624	c.624C>A	c.(622-624)GTC>GTA	p.V208V		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V208I(1)		ovary(2)	2						CAGTTCAAGTCTTTACCATAG	0.378			NA											34	178					2.81731e-10	3.66455e-10	0.002096	1	0
KIAA1524	57650	broad.mit.edu	37	3	108278872	108278872	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:108278872T>G	uc003dxb.3	-	15	2100	c.1831A>C	c.(1831-1833)AAG>CAG	p.K611Q		NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	611						cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						ATCTGATCCTTTACCTACATT	0.244			NA											4	43					0	0	0.001168	0	0
RETNLB	84666	broad.mit.edu	37	3	108474748	108474748	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:108474748C>A	uc003dxh.2	-	3	311	c.213G>T	c.(211-213)ATG>ATT	p.M71I		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	71					cell proliferation	extracellular region	hormone activity			skin(1)	1						CAGTGACAGCCATCCCTGCAT	0.527			NA											13	64					7.01153e-11	9.2203e-11	0.007291	1	0
ARHGAP31	57514	broad.mit.edu	37	3	119134833	119134833	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:119134833C>G	uc003ecj.3	+	12	4589	c.4057C>G	c.(4057-4059)CCT>GCT	p.P1353A		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	1353					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						ATTCAGTCCTCCTTTCCCCAT	0.522	Pancreas(7;176 297 5394 51128 51241)		NA											15	207					0	0	0.006122	0	0
GSK3B	2932	broad.mit.edu	37	3	119720926	119720926	+	Silent	SNP	G	G	A	rs141817453	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:119720926G>A	uc003edo.2	-	2	1232	c.249C>T	c.(247-249)GCC>GCT	p.A83A	GSK3B_uc003edn.2_Silent_p.A83A	NM_001146156	NP_001139628	P49841	GSK3B_HUMAN	glycogen synthase kinase 3 beta isoform 2	83	Protein kinase.				axon guidance|epithelial to mesenchymal transition|ER overload response|glycogen metabolic process|hippocampus development|negative regulation of apoptosis|negative regulation of protein binding|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|positive regulation of cell-matrix adhesion|positive regulation of protein complex assembly|positive regulation of protein export from nucleus|positive regulation of Rac GTPase activity|regulation of microtubule-based process|superior temporal gyrus development	Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|nucleus|plasma membrane	ATP binding|beta-catenin binding|NF-kappaB binding|p53 binding|protein kinase A catalytic subunit binding|protein serine/threonine kinase activity|RNA polymerase II transcription factor binding|tau-protein kinase activity|ubiquitin protein ligase binding			lung(2)	2				GBM - Glioblastoma multiforme(114;0.24)	Lithium(DB01356)	CTTTCTTGATGGCGACCAGTT	0.353			NA											61	208					0	0	0.00361	0	0
LRRC58	116064	broad.mit.edu	37	3	120050100	120050100	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:120050100C>G	uc003edr.2	-	4	1159	c.1063G>C	c.(1063-1065)GAA>CAA	p.E355Q		NM_001099678	NP_001093148	Q96CX6	LRC58_HUMAN	leucine rich repeat containing 58	355											0				GBM - Glioblastoma multiforme(114;0.147)		GCTTCATCTTCTGAGTCAGAT	0.458			NA											3	88					0	0	0.009096	0	0
HGD	3081	broad.mit.edu	37	3	120389380	120389380	+	Splice_Site	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:120389380C>T	uc003edw.2	-	4	547	c.177_splice	c.e4-1	p.S59_splice		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase						L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		ATACAGCCAGCTAGAGGGAAA	0.438			NA											8	96					0	0	0.004482	0	0
PARP9	83666	broad.mit.edu	37	3	122264292	122264292	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:122264292C>G	uc010hri.2	-	7	1621	c.1476G>C	c.(1474-1476)TTG>TTC	p.L492F	PARP9_uc003eff.3_Missense_Mutation_p.L457F|PARP9_uc011bjs.1_Missense_Mutation_p.L457F|PARP9_uc003efg.2_Missense_Mutation_p.L37F|PARP9_uc003efi.2_Missense_Mutation_p.L457F|PARP9_uc003efh.2_Missense_Mutation_p.L492F|PARP9_uc003efj.2_Missense_Mutation_p.L457F	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	492					cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		TGTAATTGTTCAAACTCAGCA	0.443			NA											16	144					0	0	0.00499	0	0
CCDC14	64770	broad.mit.edu	37	3	123633788	123633788	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:123633788A>G	uc011bjx.1	-	13	2791	c.2700T>C	c.(2698-2700)GAT>GAC	p.D900D	CCDC14_uc003egv.3_Silent_p.D541D|CCDC14_uc003egx.3_Silent_p.D700D|CCDC14_uc010hrt.2_Silent_p.D859D|CCDC14_uc003egy.3_Silent_p.D700D|CCDC14_uc003egz.2_3'UTR	NM_022757	NP_073594	Q49A88	CCD14_HUMAN	coiled-coil domain containing 14	900						centrosome					0		Lung NSC(201;0.0371)|Prostate(884;0.0405)|Myeloproliferative disorder(1037;0.205)		Lung(219;0.00942)|GBM - Glioblastoma multiforme(114;0.159)		AAACACTACCATCACAGACAG	0.478			NA											5	36					0	0	0.001168	0	0
RAB43	339122	broad.mit.edu	37	3	128849008	128849008	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:128849008C>T	uc003elo.1	-	11	985	c.774G>A	c.(772-774)AGG>AGA	p.R258R	ISY1_uc010hsz.1_Silent_p.R78R|ISY1_uc003elp.1_Silent_p.R258R|ISY1_uc010hta.1_Silent_p.R280R	NM_020701	NP_065752	Q86YS6	RAB43_HUMAN	ISY1 splicing factor homolog	Error:Variant_position_missing_in_Q86YS6_after_alignment					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			lung(1)	1						CCATTTTCTTCCTTCGCACCA	0.567			NA											15	120					0	0	0.006122	0	0
CPNE4	131034	broad.mit.edu	37	3	131418774	131418774	+	Silent	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:131418774T>G	uc003eok.2	-	4	846	c.411A>C	c.(409-411)ACA>ACC	p.T137T	CPNE4_uc011blq.1_Silent_p.T155T|CPNE4_uc003eol.2_Silent_p.T155T|CPNE4_uc003eom.2_Silent_p.T137T	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	137										upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						ATTTCCCTGCTGTGTTCCCAT	0.493			NA											27	43					0	0	0.009535	0	0
PRR23B	389151	broad.mit.edu	37	3	138738769	138738769	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:138738769G>T	uc003esy.1	-	1	1000	c.735C>A	c.(733-735)CAC>CAA	p.H245Q		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	245	Pro-rich.									breast(1)	1						GCGAGCGCGCGTGGGGACCTG	0.667			NA											9	45					0.00621372	0.00651623	0.006214	1	0
RBP2	5948	broad.mit.edu	37	3	139181102	139181102	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:139181102A>T	uc003eth.2	-	2	155	c.104T>A	c.(103-105)GTA>GAA	p.V35E		NM_004164	NP_004155	P50120	RET2_HUMAN	retinol binding protein 2, cellular	35					epidermis development|retinoid metabolic process|steroid metabolic process|vitamin A metabolic process	cytosol	retinal binding|retinol binding|transporter activity			skin(1)	1					Vitamin A(DB00162)	AGTGAGACGTACTGCAATCTT	0.428			NA											39	168					0	0	0.007835	0	0
ATR	545	broad.mit.edu	37	3	142253921	142253921	+	Splice_Site	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:142253921C>A	uc003eux.3	-	21	4067	c.3945_splice	c.e21+1	p.Q1315_splice		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein						cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TATTAGCATACCTGATTTTTA	0.313			NA						Other_conserved_DNA_damage_response_genes					15	32					7.81268e-19	1.1719e-18	0.00499	1	0
PLOD2	5352	broad.mit.edu	37	3	145806427	145806427	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:145806427T>C	uc003evs.1	-	9	1457	c.951A>G	c.(949-951)ATA>ATG	p.I317M	PLOD2_uc003evq.1_5'Flank|PLOD2_uc011bnm.1_Missense_Mutation_p.I262M|PLOD2_uc003evr.1_Missense_Mutation_p.I317M	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	317					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	GTGTCAACAATATGTCCAGAA	0.308			NA											13	16					0	0	0.001855	0	0
MED12L	116931	broad.mit.edu	37	3	151148114	151148114	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:151148114C>G	uc003eyp.2	+	42	6369	c.6331C>G	c.(6331-6333)CAG>GAG	p.Q2111E	MED12L_uc011bnz.1_Missense_Mutation_p.Q1775E	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2111	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCAGCAGACCCAGCAGCAGCA	0.532			NA											8	80					0	0	0.000978	0	0
NMD3	51068	broad.mit.edu	37	3	160951236	160951236	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:160951236G>T	uc003feb.1	+	5	445	c.326G>T	c.(325-327)AGA>ATA	p.R109I	NMD3_uc003fec.2_Missense_Mutation_p.R109I|NMD3_uc003fed.1_Missense_Mutation_p.R109I|NMD3_uc010hwh.2_5'Flank	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	109					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			CATTCTAAGAGACTTAAAGTT	0.378			NA											13	33					5.50884e-06	6.33193e-06	0.001368	1	0
SERPINI2	5276	broad.mit.edu	37	3	167183440	167183440	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:167183440G>A	uc003fer.1	-	3	558	c.500C>T	c.(499-501)TCA>TTA	p.S167L	SERPINI2_uc003fes.1_Missense_Mutation_p.S177L|SERPINI2_uc003fet.1_Missense_Mutation_p.S167L	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	167					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TTCTTCCCCTGAAAACATGTC	0.403			NA											4	52					0	0	0.001984	0	0
POLR2H	5437	broad.mit.edu	37	3	184082795	184082795	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:184082795C>G	uc003fok.1	+	2	202	c.115C>G	c.(115-117)CTA>GTA	p.L39V	POLR2H_uc003foj.1_RNA	NM_006232	NP_006223	P52434	RPAB3_HUMAN	RNA polymerase II, polypeptide H	39					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex|nucleolus	DNA-directed RNA polymerase activity|protein binding|zinc ion binding				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CAAGATGGATCTAATCTTAGA	0.398			NA											13	80					0	0	0.00245	0	0
RNF212	285498	broad.mit.edu	37	4	1073450	1073450	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:1073450G>C	uc003gcj.2	-	8	821	c.491C>G	c.(490-492)TCT>TGT	p.S164C	RNF212_uc003gch.2_Missense_Mutation_p.S6C|RNF212_uc003gci.2_Missense_Mutation_p.S164C|RNF212_uc010ibp.2_Intron|RNF212_uc010ibq.2_Intron	NM_001131034	NP_001124506	Q495C1	RN212_HUMAN	ring finger protein 212 isoform a	164							zinc ion binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (64;0.151)		CGGAGAAGGAGAGAGATCAAC	0.433			NA											17	88					0	0	0.006122	0	0
EVC2	132884	broad.mit.edu	37	4	5624341	5624341	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:5624341C>G	uc003gij.2	-	14	2478	c.2424G>C	c.(2422-2424)CAG>CAC	p.Q808H	EVC2_uc011bwb.1_Missense_Mutation_p.Q248H|EVC2_uc003gik.2_Missense_Mutation_p.Q728H	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	808						integral to membrane				large_intestine(3)|ovary(2)	5						CCTTCAGTCTCTGCCTCACGC	0.632			NA											5	37					0	0	0.000602	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6349667	6349667	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:6349667C>T	uc003gjc.2	-	6	1066	c.696G>A	c.(694-696)CCG>CCA	p.P232P	PPP2R2C_uc003gjb.2_Silent_p.P215P|PPP2R2C_uc011bwd.1_Silent_p.P225P|PPP2R2C_uc011bwe.1_Silent_p.P225P|PPP2R2C_uc003gja.2_Silent_p.P232P|PPP2R2C_uc003gjd.1_Silent_p.P320P	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	232	WD 4.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TGCAGTGGTGCGGATGGAACT	0.597			NA											13	47					0	0	0.003163	0	0
CLNK	116449	broad.mit.edu	37	4	10502976	10502976	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:10502976C>A	uc003gmo.3	-	18	1181	c.1044G>T	c.(1042-1044)TTG>TTT	p.L348F		NM_052964	NP_443196	Q7Z7G1	CLNK_HUMAN	mast cell immunoreceptor signal transducer	348	SH2.				immune response|intracellular signal transduction	intracellular	SH3/SH2 adaptor activity			ovary(1)	1						AAAACACAGCCAAAACATAGG	0.448	GBM(87;402 1286 6949 13902 35851)		NA											3	26					0.004672	0.00490423	0.004672	1	0
GPR125	166647	broad.mit.edu	37	4	22390301	22390301	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:22390301C>A	uc003gqm.1	-	19	3258	c.2993G>T	c.(2992-2994)GGG>GTG	p.G998V	GPR125_uc010ieo.1_Missense_Mutation_p.G854V|GPR125_uc003gql.1_Missense_Mutation_p.G125V	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	998	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				AAGGCTGGCCCCCAAGAGCTG	0.398			NA											10	46					5.50884e-06	6.33193e-06	0.001368	1	0
GABRG1	2565	broad.mit.edu	37	4	46060556	46060556	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:46060556G>A	uc003gxb.2	-	6	861	c.709C>T	c.(709-711)CAG>TAG	p.Q237*		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	237	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		AATGCAAACTGATATAATCTC	0.353			NA											5	35					0	0	0.001168	0	0
GABRG1	2565	broad.mit.edu	37	4	46125848	46125848	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:46125848A>G	uc003gxb.2	-	1	235	c.83T>C	c.(82-84)CTG>CCG	p.L28P		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	28					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		ATGCAGGGTCAGTAACAAGAA	0.413			NA											3	29					0	0	0.004672	0	0
GABRA2	2555	broad.mit.edu	37	4	46314713	46314713	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:46314713G>T	uc003gxc.3	-	4	949	c.276C>A	c.(274-276)TTC>TTA	p.F92L	GABRA2_uc010igc.2_Missense_Mutation_p.F92L|GABRA2_uc011bzc.1_Missense_Mutation_p.F37L|GABRA2_uc003gxe.2_Missense_Mutation_p.F92L	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	92	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTTGTCGAAAGAAAACATCAA	0.274			NA											7	26					5.18039e-06	5.99923e-06	0.00308	1	0
CNGA1	1259	broad.mit.edu	37	4	47939841	47939841	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:47939841G>C	uc003gxt.3	-	11	936	c.670C>G	c.(670-672)CTA>GTA	p.L224V	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.L293V	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	224	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						CCTTGTTCTAGGTAACCTAAA	0.299			NA											17	52					0	0	0.004007	0	0
SPATA18	132671	broad.mit.edu	37	4	52945942	52945942	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:52945942G>T	uc003gzl.2	+	9	1490	c.1212G>T	c.(1210-1212)AAG>AAT	p.K404N	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.K372N|SPATA18_uc003gzk.1_Missense_Mutation_p.K404N	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	404					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TCAATCCCAAGATTTCATTCC	0.443			NA											39	304					3.43241e-23	5.4204e-23	0.009718	1	0
LNX1	84708	broad.mit.edu	37	4	54347885	54347885	+	Splice_Site	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:54347885A>G	uc003hag.3	-	7	1741	c.1485_splice	c.e7+1	p.K495_splice	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Splice_Site_p.K399_splice|LNX1_uc003hah.3_Splice_Site	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a							cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TAGAGGCCTCACCTTGGGAGT	0.562			NA											6	28					0	0	0.001168	0	0
CENPC1	1060	broad.mit.edu	37	4	68374577	68374577	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:68374577C>A	uc003hdd.1	-	10	2042	c.1859G>T	c.(1858-1860)AGT>ATT	p.S620I	CENPC1_uc010ihj.1_RNA|CENPC1_uc010ihk.1_RNA|CENPC1_uc010ihm.1_Missense_Mutation_p.S620I	NM_001812	NP_001803	Q03188	CENPC_HUMAN	centromere protein C 1	620					mitotic prometaphase	condensed chromosome kinetochore|condensed nuclear chromosome, centromeric region|cytosol	DNA binding			urinary_tract(1)|lung(1)	2						TGCCTCATCACTTTCCAATGG	0.368			NA											14	69					1.02788e-11	1.396e-11	0.00499	1	0
UBA6	55236	broad.mit.edu	37	4	68488607	68488607	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:68488607C>G	uc003hdg.3	-	32	3017	c.2965G>C	c.(2965-2967)GGA>CGA	p.G989R		NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	989					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						ATTTTGACTCCCTGTACCACC	0.333			NA											10	87					0	0	0.001368	0	0
EPGN	255324	broad.mit.edu	37	4	75178861	75178861	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:75178861T>A	uc003hic.1	+	4	428	c.381T>A	c.(379-381)GTT>GTA	p.V127V	uc003hhv.1_Intron|EPGN_uc003hhw.2_Silent_p.V118V|EPGN_uc003hhx.1_Intron|EPGN_uc003hhy.1_Intron|EPGN_uc003hhz.1_Intron|EPGN_uc010iin.1_Intron|EPGN_uc003hia.1_Intron|EPGN_uc003hib.1_Intron			Q6UW88	EPGN_HUMAN	SubName: Full=cDNA FLJ75542;	127	Helical; (Potential).				activation of MAPK activity|angiogenesis|positive regulation of epidermal growth factor receptor activity|positive regulation of epithelial cell proliferation|positive regulation of mitosis	extracellular region|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity|MAP kinase kinase activity				0			Lung(101;0.196)			GTTTTCTTGTTATTTTTTACT	0.249			NA											7	46					0	0	0.001984	0	0
ANKRD56	345079	broad.mit.edu	37	4	77817832	77817832	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:77817832G>T	uc003hki.2	-	1	1171	c.1171C>A	c.(1171-1173)CTC>ATC	p.L391I		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	391											0						AGATCTTGGAGGGACAGCTGA	0.572			NA											12	133					4.93089e-13	6.85235e-13	0.00245	1	0
FRAS1	80144	broad.mit.edu	37	4	79393416	79393416	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:79393416C>G	uc003hlb.2	+	52	7894	c.7454C>G	c.(7453-7455)ACG>AGG	p.T2485R		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2484	CSPG 12.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GAGATAACGACGGGCCCTAAG	0.542			NA											7	35					0	0	0.004482	0	0
RASGEF1B	153020	broad.mit.edu	37	4	82369249	82369249	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:82369249C>A	uc003hmi.1	-	5	772	c.628G>T	c.(628-630)GCC>TCC	p.A210S	RASGEF1B_uc003hmj.1_Missense_Mutation_p.A209S|RASGEF1B_uc010ijq.1_Missense_Mutation_p.A168S	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	210	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						AGCTGCTGGGCCAACGTGTAA	0.463			NA											15	131					3.45872e-05	3.90465e-05	0.004007	1	0
WDFY3	23001	broad.mit.edu	37	4	85639672	85639672	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:85639672C>A	uc003hpd.2	-	48	8065	c.7657G>T	c.(7657-7659)GGG>TGG	p.G2553W	WDFY3_uc003hpe.1_Missense_Mutation_p.G164W	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2553						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGAAGGAGCCCCTCACTGGTA	0.398			NA											16	107					1.33834e-09	1.72828e-09	0.007413	1	0
WDFY3	23001	broad.mit.edu	37	4	85678286	85678286	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:85678286C>A	uc003hpd.2	-	33	5625	c.5217G>T	c.(5215-5217)GGG>GGT	p.G1739G		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1739						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CCGTCGATCTCCCACCAGCAC	0.443			NA											19	53					8.34094e-07	9.84999e-07	0.008871	1	0
Unknown	0	broad.mit.edu	37	4	88813117	88813117	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:88813117G>T	uc010iko.1	+	1	123	c.123G>T	c.(121-123)CAG>CAT	p.Q41H						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;												NA						TTTTCCTTCAGGAGTTGATCT	0.448			NA											13	133					7.03913e-09	8.92949e-09	0.001368	1	0
PDHA2	5161	broad.mit.edu	37	4	96761513	96761513	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:96761513G>A	uc003htr.3	+	1	275	c.212G>A	c.(211-213)CGC>CAC	p.R71H		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	71					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	ACTGTTCGCCGCATGGAATTG	0.507			NA											10	77					0	0	0.008291	0	0
CYP2U1	113612	broad.mit.edu	37	4	108866742	108866742	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:108866742G>T	uc003hyp.2	+	2	1190	c.1107G>T	c.(1105-1107)TCG>TCT	p.S369S	CYP2U1_uc011cfi.1_Silent_p.S160S	NM_183075	NP_898898	Q7Z449	CP2U1_HUMAN	cytochrome P450, family 2, subfamily U,	369					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000128)		TGTATATGTCGCTGAACCCCG	0.403			NA											24	181					9.39395e-14	1.32599e-13	0.00632	1	0
ALPK1	80216	broad.mit.edu	37	4	113353610	113353610	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:113353610C>G	uc003iap.3	+	11	3186	c.2907C>G	c.(2905-2907)ATC>ATG	p.I969M	ALPK1_uc003ian.3_Missense_Mutation_p.I969M|ALPK1_uc011cfx.1_Missense_Mutation_p.I891M|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.I797M	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	969							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GGAAAGAGATCCTTGAGGCTC	0.488			NA											18	68					0	0	0.008871	0	0
C4orf21	55345	broad.mit.edu	37	4	113541196	113541196	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:113541196G>A	uc003iau.2	-	5	524	c.313C>T	c.(313-315)CTT>TTT	p.L105F	C4orf21_uc003iaw.2_Missense_Mutation_p.L105F	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		TGACATCCAAGAGATCGGCCA	0.338			NA											10	63					0	0	0.000978	0	0
CEP170L	645455	broad.mit.edu	37	4	119444550	119444550	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:119444550G>T	uc003icb.2	+	2	123	c.39G>T	c.(37-39)GAG>GAT	p.E13D		NR_003135				RecName: Full=Cep170-like protein;												0						GGATTAAAGAGCAGGAAGACT	0.428			NA											4	5					0.00024832	0.000271513	0.009096	1	0
SPRY1	10252	broad.mit.edu	37	4	124322828	124322828	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:124322828G>A	uc003ifa.2	+	2	270	c.82G>A	c.(82-84)GAC>AAC	p.D28N	SPRY1_uc003ifb.2_Missense_Mutation_p.D28N	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	28					epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						TCAGAGATTAGACTATGAGAG	0.468			NA											33	222					0	0	0.002096	0	0
PLK4	10733	broad.mit.edu	37	4	128816214	128816214	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:128816214C>G	uc003ifo.2	+	14	2914	c.2669C>G	c.(2668-2670)TCT>TGT	p.S890C	PLK4_uc011cgs.1_Missense_Mutation_p.S858C|PLK4_uc011cgt.1_Missense_Mutation_p.S849C	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	890					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						CTTTTGAAATCTGTTTTTGTG	0.348	Colon(135;508 1718 19061 31832 42879)		NA											11	79					0	0	0.001368	0	0
PCDH10	57575	broad.mit.edu	37	4	134071803	134071803	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:134071803G>C	uc003iha.2	+	1	1334	c.508G>C	c.(508-510)GAC>CAC	p.D170H	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.D170H	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	170	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		CTTCTCCCTGGACGTGCAGAC	0.637			NA											6	79					0	0	0.00308	0	0
INPP4B	8821	broad.mit.edu	37	4	143129581	143129581	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:143129581T>A	uc003iix.3	-	15	1664	c.1069A>T	c.(1069-1071)AAA>TAA	p.K357*	INPP4B_uc003iiw.3_Nonsense_Mutation_p.K357*|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Nonsense_Mutation_p.K172*|INPP4B_uc011cho.1_Intron|INPP4B_uc011chp.1_Nonsense_Mutation_p.K228*	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	357					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					ATGATACCTTTCAAGTGAGGG	0.328			NA											8	67					0	0	0.004482	0	0
INPP4B	8821	broad.mit.edu	37	4	143191873	143191873	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:143191873C>A	uc003iix.3	-	11	1153	c.558G>T	c.(556-558)ATG>ATT	p.M186I	INPP4B_uc003iiw.3_Missense_Mutation_p.M186I|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Missense_Mutation_p.M1I|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Missense_Mutation_p.M57I	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	186					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					CAATCTCCCCCATCTTCACGA	0.433			NA											10	106					0.000219431	0.00024066	0.00245	1	0
OTUD4	54726	broad.mit.edu	37	4	146067520	146067520	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:146067520C>A	uc003ika.3	-	14	1264	c.1126G>T	c.(1126-1128)GGC>TGC	p.G376C	OTUD4_uc003ijz.3_Missense_Mutation_p.G375C	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	440							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GGGGAAAGGCCGAAATAGTTA	0.393			NA											8	73					1.06961e-07	1.31504e-07	0.00308	1	0
FBXW7	55294	broad.mit.edu	37	4	153244298	153244298	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:153244298G>C	uc003ims.2	-	12	2008	c.1859C>G	c.(1858-1860)CCC>CGC	p.P620R	FBXW7_uc011cii.1_Missense_Mutation_p.P620R|FBXW7_uc003imt.2_Missense_Mutation_p.P620R|FBXW7_uc011cih.1_Missense_Mutation_p.P444R|FBXW7_uc003imq.2_Missense_Mutation_p.P540R|FBXW7_uc003imr.2_Missense_Mutation_p.P502R	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	620					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				ATGCTTGTTGGGACCTAGACA	0.338			NA	Mis|N|D|F		colorectal|endometrial|T-ALL								7	37					0	0	0.001984	0	0
FHDC1	85462	broad.mit.edu	37	4	153896824	153896824	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:153896824G>C	uc003inf.2	+	11	2456	c.2381G>C	c.(2380-2382)AGA>ACA	p.R794T		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	794					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					TCCAGACCCAGAGGCGGGGAC	0.607			NA											17	112					0	0	0.007413	0	0
TLR2	7097	broad.mit.edu	37	4	154624696	154624696	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:154624696C>T	uc003inq.2	+	3	856	c.637C>T	c.(637-639)CTG>TTG	p.L213L	TLR2_uc003inr.2_Silent_p.L213L|TLR2_uc003ins.2_Silent_p.L213L	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	213	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				GCATATTTTACTGCTGGAGAT	0.378			NA											13	76					0	0	0.00245	0	0
DCHS2	54798	broad.mit.edu	37	4	155278470	155278470	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:155278470T>C	uc003inw.2	-	6	701	c.701A>G	c.(700-702)TAT>TGT	p.Y234C	DCHS2_uc003inx.2_Intron	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	234	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ctctggactatagagtcctaa	0			NA											4	59					0	0	0.000602	0	0
NPY2R	4887	broad.mit.edu	37	4	156135639	156135639	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:156135639T>A	uc003ioq.2	+	2	1043	c.548T>A	c.(547-549)CTG>CAG	p.L183Q	NPY2R_uc003ior.2_Missense_Mutation_p.L183Q	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	183	Helical; Name=4; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GCAAGTCCCCTGGCCATCTTC	0.542			NA											6	60					0	0	0.001984	0	0
GRIA2	2891	broad.mit.edu	37	4	158257770	158257770	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:158257770G>A	uc003ipm.3	+	11	2174	c.1715G>A	c.(1714-1716)TGG>TAG	p.W572*	GRIA2_uc011cit.1_Nonsense_Mutation_p.W525*|GRIA2_uc003ipl.3_Nonsense_Mutation_p.W572*|GRIA2_uc003ipk.3_Nonsense_Mutation_p.W525*|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	572	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	CCCTACGAGTGGCACACTGAG	0.413			NA											18	104					0	0	0.007413	0	0
FSTL5	56884	broad.mit.edu	37	4	162459330	162459330	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:162459330C>A	uc003iqh.2	-	10	1736	c.1300G>T	c.(1300-1302)GCT>TCT	p.A434S	FSTL5_uc003iqi.2_Missense_Mutation_p.A433S|FSTL5_uc010iqv.2_Missense_Mutation_p.A433S	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	434						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		GTCTTTCTAGCAGAGTCTTCC	0.398			NA											29	222					2.42023e-17	3.58048e-17	0.003271	1	0
PALLD	23022	broad.mit.edu	37	4	169632897	169632897	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:169632897G>A	uc011cjx.1	+	10	1998	c.1787G>A	c.(1786-1788)AGG>AAG	p.R596K	PALLD_uc003iru.2_Missense_Mutation_p.R596K|PALLD_uc003irv.2_Missense_Mutation_p.R214K	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	596					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GGCCTGAGCAGGGCAGCCCTT	0.512	Esophageal Squamous(109;1482 1532 18347 40239 51172)		NA							Pancreatic_Cancer_Familial_Clustering_of				21	36					0	0	0.001882	0	0
GALNTL6	442117	broad.mit.edu	37	4	173803979	173803979	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:173803979G>A	uc003isv.2	+	8	1698	c.962G>A	c.(961-963)CGG>CAG	p.R321Q		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	321	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GCTGTGGATCGGAAATGGTTT	0.423			NA											33	154					0	0	0.009535	0	0
FAT1	2195	broad.mit.edu	37	4	187540161	187540161	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:187540161C>A	uc003izf.2	-	10	7767	c.7579G>T	c.(7579-7581)GTT>TTT	p.V2527F		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2527	Extracellular (Potential).|Cadherin 23.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGGTAAGTAACGTGACCATAA	0.408	Colon(197;1040 2055 4143 4984 49344)		NA								HNSCC(5;0.00058)			21	125					3.62473e-10	4.70342e-10	0.001882	1	0
SDHA	6389	broad.mit.edu	37	5	228396	228396	+	Missense_Mutation	SNP	G	G	C	rs1041946		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:228396G>C	uc003jao.3	+	6	833	c.718G>C	c.(718-720)GAG>CAG	p.E240Q	SDHA_uc003jan.2_Missense_Mutation_p.E240Q|SDHA_uc011clv.1_Missense_Mutation_p.E240Q|SDHA_uc011clw.1_Missense_Mutation_p.E192Q|SDHA_uc003jap.3_Missense_Mutation_p.E240Q|SDHA_uc003jaq.3_Missense_Mutation_p.E15Q|SDHA_uc003jar.3_5'Flank	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	240					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	ACTGTGCATAGAGGACGGGTC	0.418			NA							Familial_Paragangliomas				3	141					0	0	0.004672	0	0
SLC9A3	6550	broad.mit.edu	37	5	476783	476783	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:476783C>T	uc003jbe.2	-	12	1877	c.1765G>A	c.(1765-1767)GAA>AAA	p.E589K	SLC9A3_uc011clx.1_Missense_Mutation_p.E580K|uc011cly.1_5'Flank	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	589	Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			CTGACATTTTCTCTCCTGCGT	0.667			NA											4	56					0	0	0.001168	0	0
NSUN2	54888	broad.mit.edu	37	5	6620303	6620303	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:6620303G>A	uc003jdu.2	-	7	796	c.731C>T	c.(730-732)TCC>TTC	p.S244F	NSUN2_uc003jdt.2_Missense_Mutation_p.S8F|NSUN2_uc011cmk.1_Missense_Mutation_p.S209F|NSUN2_uc003jdv.2_Missense_Mutation_p.S8F	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	244						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						GGGTATGCTGGAGGCATCATG	0.493			NA											19	170					0	0	0.002299	0	0
CTNND2	1501	broad.mit.edu	37	5	11199641	11199641	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:11199641G>T	uc003jfa.1	-	11	2039	c.1894C>A	c.(1894-1896)CTG>ATG	p.L632M	CTNND2_uc010itt.2_Missense_Mutation_p.L541M|CTNND2_uc011cmy.1_Missense_Mutation_p.L295M|CTNND2_uc011cmz.1_Missense_Mutation_p.L199M|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.L199M	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	632	ARM 4.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CAGTTTTTCAGGGCAATTTTG	0.507			NA											122	130					5.58585e-45	9.35609e-45	0.00361	1	0
CTNND2	1501	broad.mit.edu	37	5	11236895	11236895	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:11236895G>T	uc003jfa.1	-	10	1814	c.1669C>A	c.(1669-1671)CAG>AAG	p.Q557K	CTNND2_uc010itt.2_Missense_Mutation_p.Q466K|CTNND2_uc011cmy.1_Missense_Mutation_p.Q220K|CTNND2_uc011cmz.1_Missense_Mutation_p.Q124K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.Q124K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	557	ARM 2.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGCAACATCTGAATCACTTCC	0.483			NA											12	156					9.31168e-06	1.06462e-05	0.001855	1	0
MARCH11	441061	broad.mit.edu	37	5	16091000	16091000	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:16091000A>G	uc003jfo.2	-	3	1097	c.884T>C	c.(883-885)ATA>ACA	p.I295T	MARCH11_uc010itw.1_Missense_Mutation_p.I51T	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	295	Helical; (Potential).					cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						GGTCTTACCTATGCACACTAG	0.433			NA											11	32					0	0	0.003163	0	0
CDH18	1016	broad.mit.edu	37	5	19838966	19838966	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:19838966C>T	uc003jgc.2	-	2	507	c.130G>A	c.(130-132)GAA>AAA	p.E44K	CDH18_uc003jgd.2_Missense_Mutation_p.E44K|CDH18_uc011cnm.1_Missense_Mutation_p.E44K	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	44					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					ACTTCGGTTTCACCTTCAATG	0.448			NA											4	83					0	0	0.000602	0	0
PRDM9	56979	broad.mit.edu	37	5	23527537	23527537	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:23527537G>T	uc003jgo.2	+	11	2522	c.2340G>T	c.(2338-2340)GAG>GAT	p.E780D		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	780	C2H2-type 11.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TCTGCAGGGAGTGTGGGCGGG	0.582			NA								HNSCC(3;0.000094)			81	142					1.14225e-51	1.91919e-51	0.00361	1	0
CDH10	1008	broad.mit.edu	37	5	24488132	24488132	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:24488132G>T	uc003jgr.1	-	12	2339	c.2007C>A	c.(2005-2007)GCC>GCA	p.A669A	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	669	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CGATATCAAAGGCCTGGGTGT	0.463			NA								HNSCC(23;0.051)			60	39					2.05175e-36	3.40484e-36	0.00361	1	0
CDH10	1008	broad.mit.edu	37	5	24537495	24537495	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:24537495C>G	uc003jgr.1	-	3	852	c.520G>C	c.(520-522)GTT>CTT	p.V174L	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	174	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TTACCTACAACAGACATTTCG	0.323			NA								HNSCC(23;0.051)			28	183					0	0	0.002096	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33535001	33535001	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:33535001C>A	uc003jia.1	-	23	4706	c.4543G>T	c.(4543-4545)GAT>TAT	p.D1515Y	ADAMTS12_uc010iuq.1_Missense_Mutation_p.D1430Y	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1515	TSP type-1 8.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GGTTTGTGATCACATAGACAT	0.488			NA								HNSCC(64;0.19)			14	114					9.05144e-12	1.23397e-11	0.001855	1	0
SPEF2	79925	broad.mit.edu	37	5	35795874	35795874	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:35795874A>T	uc003jjo.2	+	33	4918	c.4807A>T	c.(4807-4809)AAT>TAT	p.N1603Y	SPEF2_uc003jjp.1_Missense_Mutation_p.N1089Y|SPEF2_uc003jjr.2_Missense_Mutation_p.N658Y	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1603					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCTTCCATTTAATAGGCAGGA	0.323			NA											18	277					0	0	0.001882	0	0
LIFR	3977	broad.mit.edu	37	5	38523600	38523600	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:38523600C>T	uc010ive.1	-	5	814	c.482G>A	c.(481-483)GGT>GAT	p.G161D	LIFR_uc003jli.2_Missense_Mutation_p.G161D	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	161	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					AAAAACTGAACCCCTGTCGTT	0.358	Melanoma(13;4 730 6426 9861 34751)		NA	T	PLAG1	salivary adenoma								11	117					0	0	0.000978	0	0
GHR	2690	broad.mit.edu	37	5	42718755	42718755	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:42718755C>A	uc003jmt.2	+	10	1189	c.1146C>A	c.(1144-1146)GGC>GGA	p.G382G	GHR_uc011cpq.1_Silent_p.G195G	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	382	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TGAAGGATGGCGACTCTGGAC	0.463			NA											18	154					6.49762e-13	8.98323e-13	0.006122	1	0
MRPS30	10884	broad.mit.edu	37	5	44815242	44815242	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:44815242C>T	uc003joh.2	+	5	1296	c.1258C>T	c.(1258-1260)CAG>TAG	p.Q420*		NM_016640	NP_057724	Q9NP92	RT30_HUMAN	mitochondrial ribosomal protein S30	420					apoptosis|translation	mitochondrion|ribosome	structural constituent of ribosome				0	Lung NSC(6;8.08e-07)					TGTTCTACTTCAGATAGTTCA	0.318			NA											4	34					0	0	0.000602	0	0
ANKRD55	79722	broad.mit.edu	37	5	55455694	55455694	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:55455694G>T	uc003jqu.2	-	6	601	c.449C>A	c.(448-450)TCG>TAG	p.S150*		NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	149	ANK 4.									skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				GCTGATGTTCGACTGTTGCAA	0.463			NA											13	255					1.5842e-08	1.99554e-08	0.001855	1	0
FAM169A	26049	broad.mit.edu	37	5	74130338	74130338	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:74130338G>T	uc003kdm.2	-	5	446	c.403C>A	c.(403-405)CCA>ACA	p.P135T	FAM169A_uc010izm.2_Missense_Mutation_p.P135T|FAM169A_uc003kdl.2_Intron	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	135											0						CACAGGAATGGGATCTCATTT	0.398			NA											17	27					2.94398e-08	3.67401e-08	0.007413	1	0
IQGAP2	10788	broad.mit.edu	37	5	75885525	75885525	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:75885525C>G	uc003kek.2	+	7	834	c.612C>G	c.(610-612)GCC>GCG	p.A204A		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	204					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		GTATTCTGGCCAATGAACTGT	0.368			NA											3	15					0	0	0.004672	0	0
AQPEP	206338	broad.mit.edu	37	5	115335573	115335573	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:115335573C>G	uc003kro.2	+	7	1653	c.1489C>G	c.(1489-1491)CTC>GTC	p.L497V	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	497	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						AATACAGGAACTCTTTGACAT	0.368			NA											29	78					0	0	0.003271	0	0
FBN2	2201	broad.mit.edu	37	5	127800495	127800495	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:127800495G>T	uc003kuu.2	-	6	1187	c.748C>A	c.(748-750)CCC>ACC	p.P250T	FBN2_uc003kuv.2_Missense_Mutation_p.P217T|FBN2_uc003kuw.3_Missense_Mutation_p.P250T|FBN2_uc003kux.1_Missense_Mutation_p.P250T	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	250	TB 1.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		ATCTCACAGGGATGGCCCCAC	0.597			NA											26	80					1.75199e-13	2.4505e-13	0.007291	1	0
SEPT8	23176	broad.mit.edu	37	5	132100012	132100012	+	Missense_Mutation	SNP	C	C	A	rs76417071	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:132100012C>A	uc003kxr.2	-	3	489	c.251G>T	c.(250-252)CGG>CTG	p.R84L	SEPT8_uc003kxs.1_Missense_Mutation_p.R84L|SEPT8_uc003kxu.2_Missense_Mutation_p.R84L|SEPT8_uc011cxi.1_Missense_Mutation_p.R84L|SEPT8_uc003kxv.2_Missense_Mutation_p.R84L|SEPT8_uc003kxt.2_Missense_Mutation_p.R24L	NM_001098811	NP_001092281	Q92599	SEPT8_HUMAN	septin 8 isoform a	84					cell cycle	septin complex	GTP binding|protein binding			ovary(2)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGTCTGGGGCCGCAGGCGCAC	0.562			NA											11	48					2.68362e-12	3.67717e-12	0.001368	1	0
DDX46	9879	broad.mit.edu	37	5	134126186	134126186	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:134126186A>T	uc003kzw.2	+	13	1738	c.1570A>T	c.(1570-1572)ACA>TCA	p.T524S	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	524	Helicase ATP-binding.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCGAAGAGTGACATATGTTGT	0.274	Colon(13;391 453 4901 21675 24897)		NA											20	56					0	0	0.010504	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908217	139908217	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:139908217G>T	uc003lfs.1	+	29	5810	c.5686G>T	c.(5686-5688)GTG>TTG	p.V1896L	ANKHD1_uc003lfr.2_Missense_Mutation_p.V1896L|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.V635L|ANKHD1_uc003lfw.2_Missense_Mutation_p.V534L|ANKHD1_uc010jfl.2_Missense_Mutation_p.V331L|ANKHD1-EIF4EBP3_uc003lfx.1_Missense_Mutation_p.V33L	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1896						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTGAGACCTGTGAATCCTGG	0.498			NA											21	73					3.62473e-10	4.70342e-10	0.001882	1	0
PCDHA1	56147	broad.mit.edu	37	5	140168129	140168129	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140168129C>T	uc003lhb.2	+	1	2254	c.2254C>T	c.(2254-2256)CAG>TAG	p.Q752*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Nonsense_Mutation_p.Q752*	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	752	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCGAACTCACAGCAGAGGCG	0.642			NA											11	22					0	0	0.008291	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237095	140237095	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140237095C>A	uc003lhx.2	+	1	1462	c.1462C>A	c.(1462-1464)CTG>ATG	p.L488M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.L488M|PCDHA10_uc011dad.1_Missense_Mutation_p.L488M	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	488	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGAACGCCCTGGTGTCCTA	0.667			NA											35	35					3.77016e-25	6.0066e-25	0.003214	1	0
PCDHA12	56137	broad.mit.edu	37	5	140256759	140256759	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140256759A>G	uc003lic.2	+	1	1829	c.1702A>G	c.(1702-1704)ACT>GCT	p.T568A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.T568A	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	568	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGCTGGCGACTCCGGCTGG	0.711	Pancreas(113;759 1672 13322 24104 50104)		NA											10	131					0	0	0.006122	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262802	140262802	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140262802G>A	uc003lif.2	+	1	949	c.949G>A	c.(949-951)GAA>AAA	p.E317K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.E317K|PCDHA13_uc003lid.2_Missense_Mutation_p.E317K	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	317	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAATTATATGAAATATCCGT	0.403	Melanoma(147;1739 1852 5500 27947 37288)		NA											39	99					0	0	0.005524	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432667	140432667	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140432667G>T	uc003lik.1	+	1	1689	c.1612G>T	c.(1612-1614)GGC>TGC	p.G538C		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	538	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACTGATGGGGGCTTCCTGTC	0.453			NA											19	64					1.00905e-13	1.42058e-13	0.008871	1	0
PCDHB4	56131	broad.mit.edu	37	5	140502399	140502399	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140502399C>A	uc003lip.1	+	1	819	c.819C>A	c.(817-819)TTC>TTA	p.F273L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	273	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGAAACTTCGGGAGTGTTT	0.403			NA											48	144					3.21987e-24	5.12231e-24	0.00361	1	0
PCDHB6	56130	broad.mit.edu	37	5	140530549	140530549	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140530549C>A	uc003lir.2	+	1	711	c.711C>A	c.(709-711)AAC>AAA	p.N237K	PCDHB6_uc011dah.1_Missense_Mutation_p.N101K	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	237	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAATGACAACGTCCCCGAGT	0.562			NA											9	53					0.000978159	0.00104824	0.000978	1	0
PCDHB8	56128	broad.mit.edu	37	5	140559495	140559495	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140559495C>T	uc011dai.1	+	1	2066	c.1880C>T	c.(1879-1881)ACC>ATC	p.T627I	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	627	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGGTGCGCACCGCCAGGCTG	0.701			NA											19	62					0	0	0.003271	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605057	140605057	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140605057G>T	uc003ljb.2	+	1	1980	c.1980G>T	c.(1978-1980)GTG>GTT	p.V660V	PCDHB14_uc011dal.1_Silent_p.V507V	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	660	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCTGCACGTGCTCCTGGTGG	0.711	Ovarian(141;50 1831 27899 33809 37648)		NA											8	68					2.17888e-05	2.47016e-05	0.006214	1	0
PCDHB18	54660	broad.mit.edu	37	5	140615779	140615779	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140615779G>T	uc003ljc.1	+	1	1842	c.1494G>T	c.(1492-1494)GTG>GTT	p.V498V		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GCGTGCTGGTGCTGGACGCCA	0.706			NA											8	77					0.00448238	0.00471438	0.004482	1	0
PCDHB18	54660	broad.mit.edu	37	5	140615835	140615835	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140615835C>T	uc003ljc.1	+	1	1898	c.1550C>T	c.(1549-1551)GCG>GTG	p.A517V		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						AACGGCTCGGCGCCCTGCACC	0.716			NA											9	24					0	0	0.006214	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625580	140625580	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140625580C>G	uc003lje.2	+	1	434	c.434C>G	c.(433-435)ACT>AGT	p.T145S		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	145	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATCCCAGAAACTAGCTCCCTT	0.413			NA											24	115					0	0	0.007291	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625593	140625593	+	Silent	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140625593G>C	uc003lje.2	+	1	447	c.447G>C	c.(445-447)GGG>GGC	p.G149G		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	149	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCCCTTGGGACTGTGTTTC	0.418			NA											19	107					0	0	0.002299	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626431	140626432	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140626431_140626432CC>AA	uc003lje.2	+	1	1285_1286	c.1285_1286CC>AA	c.(1285-1287)CCA>AAA	p.P429K		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	429	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTGGGGACTCCAAGGCTGAAA	0.554			NA											32	118					0	0	0.004672	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140856219	140856219	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:140856219A>G	uc003lkv.1	+	1	651	c.536A>G	c.(535-537)TAC>TGC	p.Y179C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Missense_Mutation_p.Y179C|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	179	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAAATGAATACTTTGCGCTT	0.612			NA											4	65					0	0	0.009096	0	0
KCTD16	57528	broad.mit.edu	37	5	143586702	143586702	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:143586702C>A	uc003lnm.1	+	3	1054	c.425C>A	c.(424-426)GCC>GAC	p.A142D	KCTD16_uc003lnn.1_Missense_Mutation_p.A142D	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	142						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			TTTGAAGATGCCTCCCAAGGA	0.537			NA											29	78					5.91797e-21	9.11824e-21	0.002445	1	0
SPARC	6678	broad.mit.edu	37	5	151046061	151046061	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:151046061T>C	uc003luh.2	-	7	619	c.595A>G	c.(595-597)ATC>GTC	p.I199V	GM2A_uc011dcs.1_Intron|SPARC_uc003lug.2_Missense_Mutation_p.I33V|SPARC_uc003lui.2_Missense_Mutation_p.I199V	NM_003118	NP_003109	P09486	SPRC_HUMAN	secreted protein, acidic, cysteine-rich	199					ossification|platelet activation|platelet degranulation|signal transduction	basement membrane|extracellular space|platelet alpha granule lumen	calcium ion binding|collagen binding			central_nervous_system(1)	1		Medulloblastoma(196;0.109)|all_hematologic(541;0.122)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;0.00118)	Becaplermin(DB00102)	TTCTCATGGATCTTCTTCACC	0.567			NA											6	28					0	0	0.001168	0	0
NMUR2	56923	broad.mit.edu	37	5	151784176	151784176	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:151784176G>T	uc003luv.2	-	1	665	c.499C>A	c.(499-501)CTC>ATC	p.L167I		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	167	Helical; Name=4; (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			ACGATGCCGAGGATCCTGAGG	0.637			NA											23	69					8.24728e-16	1.19066e-15	0.004656	1	0
FAM114A2	10827	broad.mit.edu	37	5	153413916	153413916	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:153413916G>T	uc003lvb.2	-	3	820	c.232C>A	c.(232-234)CCC>ACC	p.P78T	FAM114A2_uc003lvc.2_Missense_Mutation_p.P78T|FAM114A2_uc003lvd.2_Missense_Mutation_p.P78T|FAM114A2_uc003lve.2_Intron|FAM114A2_uc011dda.1_Intron	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	78							purine nucleotide binding				0						CTGGTCTGGGGTACATCTTTG	0.423			NA											15	60					1.52009e-12	2.09621e-12	0.003163	1	0
GEMIN5	25929	broad.mit.edu	37	5	154271039	154271039	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:154271039C>G	uc003lvx.3	-	26	4107	c.4024G>C	c.(4024-4026)GAC>CAC	p.D1342H	GEMIN5_uc011ddk.1_Missense_Mutation_p.D1341H	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	1342					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AGTCTCAAGTCTAGTTCTGAA	0.478			NA											5	283					0	0	0.001984	0	0
EBF1	1879	broad.mit.edu	37	5	158523984	158523984	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:158523984T>A	uc010jip.2	-	2	591	c.289A>T	c.(289-291)AAA>TAA	p.K97*	EBF1_uc011ddw.1_5'Flank|EBF1_uc011ddx.1_Nonsense_Mutation_p.K97*|EBF1_uc003lxl.3_Nonsense_Mutation_p.K97*	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	97					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCACTTACTTTTTCCTTCTCC	0.632			NA	T	HMGA2	lipoma								9	21					0	0	0.008291	0	0
ATP10B	23120	broad.mit.edu	37	5	160029594	160029594	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:160029594T>C	uc003lym.1	-	21	4200	c.3353A>G	c.(3352-3354)TAC>TGC	p.Y1118C	ATP10B_uc010jit.1_Missense_Mutation_p.Y435C	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1118	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACGTTCTTGTAGAGGTAGTA	0.572			NA											5	34					0	0	0.000602	0	0
RUFY1	80230	broad.mit.edu	37	5	179023586	179023586	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:179023586G>A	uc003mka.1	+	13	1535	c.1535G>A	c.(1534-1536)AGG>AAG	p.R512K	RUFY1_uc003mkb.1_Missense_Mutation_p.R404K|RUFY1_uc003mkc.1_Missense_Mutation_p.R404K|RUFY1_uc003mkd.1_Missense_Mutation_p.R114K	NM_025158	NP_079434	Q96T51	RUFY1_HUMAN	RUN and FYVE domain-containing 1 isoform a	512	Potential.				endocytosis|protein transport	early endosome membrane	lipid binding|zinc ion binding			ovary(4)|breast(1)	5	all_cancers(89;0.00018)|all_epithelial(37;8.37e-05)|Renal(175;0.000159)|Lung NSC(126;0.00108)|all_lung(126;0.00195)	all_cancers(40;0.0322)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGCGGGCGAGGCAGGGGGCT	0.592			NA								HNSCC(44;0.11)			21	209					0	0	0.002299	0	0
MAML1	9794	broad.mit.edu	37	5	179193482	179193482	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:179193482A>T	uc003mkm.2	+	2	1734	c.1471A>T	c.(1471-1473)AGT>TGT	p.S491C	MAML1_uc003mkn.1_Missense_Mutation_p.S491C	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	491					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAACCTGCTGAGTCACCAGCC	0.527			NA											20	37					0	0	0.008361	0	0
MAPK9	5601	broad.mit.edu	37	5	179691800	179691800	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:179691800G>C	uc003mls.3	-	4	563	c.292C>G	c.(292-294)CTA>GTA	p.L98V	MAPK9_uc003mlt.3_Missense_Mutation_p.L98V|MAPK9_uc010jlc.2_Missense_Mutation_p.L98V|MAPK9_uc003mlv.3_Missense_Mutation_p.L98V|MAPK9_uc011dgx.1_Missense_Mutation_p.L98V	NM_002752	NP_002743	P45984	MK09_HUMAN	mitogen-activated protein kinase 9 isoform JNK2	98	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)	4	all_cancers(89;6.54e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0236)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AATTCTTCTAGAGTTTTTTGT	0.259			NA											6	13					0	0	0.001984	0	0
FLT4	2324	broad.mit.edu	37	5	180057260	180057260	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:180057260C>A	uc003mma.3	-	4	557	c.478G>T	c.(478-480)GTG>TTG	p.V160L	FLT4_uc003mlz.3_Missense_Mutation_p.V160L|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Missense_Mutation_p.V160L|FLT4_uc011dgz.1_Missense_Mutation_p.V160L|FLT4_uc011dha.1_Missense_Mutation_p.W143C	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	160	Ig-like C2-type 2.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GGGATGGACACCAGACAGGGC	0.622	Colon(97;1075 1466 27033 27547 35871)		NA							Congenital_Hereditary_Lymphedema				10	55					6.40141e-05	7.15178e-05	0.000978	1	0
LY86	9450	broad.mit.edu	37	6	6589040	6589040	+	Missense_Mutation	SNP	A	A	G	rs75006006		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:6589040A>G	uc003mwy.1	+	1	107	c.73A>G	c.(73-75)AAA>GAA	p.K25E	LOC285780_uc003mww.3_Intron|LOC285780_uc003mwx.2_Intron	NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	25					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					CGGCGGTGGGAAAGCCTGGCC	0.572			NA											15	82					0	0	0.001882	0	0
TRIM27	5987	broad.mit.edu	37	6	28876835	28876835	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:28876835C>A	uc003nlr.2	-	5	1160	c.801G>T	c.(799-801)TGG>TGT	p.W267C	TRIM27_uc003nls.2_Missense_Mutation_p.W267C|TRIM27_uc003nlt.1_Missense_Mutation_p.W267C	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	267					cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						GAGGTGTGATCCAAGGTTCAG	0.299			NA	T	RET	papillary thyroid								17	139					1.00905e-13	1.42058e-13	0.008871	1	0
OR14J1	442191	broad.mit.edu	37	6	29274975	29274975	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:29274975G>C	uc011dln.1	+	1	509	c.509G>C	c.(508-510)AGA>ACA	p.R170T		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTGGGAAGAGAGTCATTCAC	0.478			NA											3	166					0	0	0.004672	0	0
OR2H2	7932	broad.mit.edu	37	6	29555777	29555777	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:29555777C>A	uc003nmr.1	+	1	95	c.56C>A	c.(55-57)CCA>CAA	p.P19Q	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	19	Extracellular (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTGAACACCCAGGGCTGGAA	0.557			NA											24	242					1.85244e-09	2.38646e-09	0.00333	1	0
GABBR1	2550	broad.mit.edu	37	6	29599302	29599302	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:29599302T>C	uc003nmt.3	-	3	496	c.160A>G	c.(160-162)ATC>GTC	p.I54V	GABBR1_uc003nmu.3_Missense_Mutation_p.I54V|GABBR1_uc011dlr.1_5'UTR|GABBR1_uc011dls.1_Missense_Mutation_p.I54V	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	54	Sushi 1.|Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	AGGAAGTTGATAGCCTTCACC	0.632			NA											20	218					0	0	0.00333	0	0
DHX16	8449	broad.mit.edu	37	6	30630700	30630700	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:30630700C>T	uc003nqz.2	-	8	1628	c.1416G>A	c.(1414-1416)AAG>AAA	p.K472K	DHX16_uc003nqy.2_5'Flank|DHX16_uc011dmo.1_Silent_p.K412K	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	472	Helicase ATP-binding.				mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CATTCCCAAGCTTCACACCCA	0.567			NA											7	85					0	0	0.004482	0	0
CFB	629	broad.mit.edu	37	6	31916238	31916238	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:31916238A>T	uc003nyj.3	+	7	1263	c.985A>T	c.(985-987)AGC>TGC	p.S329C	CFB_uc011dor.1_Missense_Mutation_p.S831C|CFB_uc003nyi.2_Missense_Mutation_p.S329C	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	329	VWFA.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TGAAGCAGACAGCAGTAATGC	0.478			NA											17	111					0	0	0.004007	0	0
NOTCH4	4855	broad.mit.edu	37	6	32168733	32168733	+	Missense_Mutation	SNP	G	G	A	rs138572849		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:32168733G>A	uc003obb.2	-	23	4329	c.4190C>T	c.(4189-4191)CCG>CTG	p.P1397L	NOTCH4_uc003oba.2_Missense_Mutation_p.P60L|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1397	Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GCGGGATGCCGGGTGGTCAGG	0.632			NA											9	44					0	0	0.006214	0	0
TFEB	7942	broad.mit.edu	37	6	41658482	41658482	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:41658482G>A	uc003oqs.1	-	4	689	c.387C>T	c.(385-387)CAC>CAT	p.H129H	TFEB_uc003oqt.1_Silent_p.H129H|TFEB_uc003oqu.1_Silent_p.H143H|TFEB_uc003oqv.1_Silent_p.H129H|TFEB_uc010jxo.1_Silent_p.H129H|TFEB_uc003oqx.1_Silent_p.H129H|TFEB_uc003oqr.1_Intron|TFEB_uc003oqw.1_Silent_p.H129H	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	129				GSPKPPPAASPGVRAGHVLSSSAGNSAPN -> ALRNPHQP PPQGCELDTCCPPPLATVLPI (in Ref. 1; AAA36730).	embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AGGACAGCACGTGTCCAGCTC	0.637			NA	T	ALPHA	renal (childhood epithelioid)								15	50					0	0	0.00499	0	0
MRPL2	51069	broad.mit.edu	37	6	43023909	43023909	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:43023909C>A	uc003ots.1	-	4	553	c.430G>T	c.(430-432)GGG>TGG	p.G144W	CUL7_uc011dvb.1_5'Flank|CUL7_uc003otq.2_5'Flank|CUL7_uc010jyh.2_5'Flank|KLC4_uc003otr.1_Intron|MRPL2_uc011dvc.1_Missense_Mutation_p.G144W	NM_015950	NP_057034	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2 precursor	144					translation	mitochondrion|ribosome	structural constituent of ribosome				0		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		CGGCTGCCCCCAGCAACCAGA	0.522			NA											26	118					4.43304e-23	6.9699e-23	0.00632	1	0
AARS2	57505	broad.mit.edu	37	6	44270894	44270894	+	Missense_Mutation	SNP	G	G	A	rs145436818	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:44270894G>A	uc010jza.1	-	16	2167	c.2164C>T	c.(2164-2166)CGG>TGG	p.R722W	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	722					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	GATACCACCCGCACAGGGTCT	0.607			NA											12	59					0	0	0.001855	0	0
GPR116	221395	broad.mit.edu	37	6	46826211	46826211	+	Silent	SNP	C	C	A	rs142588297	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:46826211C>A	uc003oyo.3	-	17	3718	c.3429G>T	c.(3427-3429)TCG>TCT	p.S1143S	GPR116_uc011dwj.1_Silent_p.S698S|GPR116_uc011dwk.1_Silent_p.S572S|GPR116_uc003oyp.3_Silent_p.S1001S|GPR116_uc003oyq.3_Silent_p.S1143S|GPR116_uc010jzi.1_Silent_p.S815S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1143	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GCGTGATGACCGAGATGGCAA	0.552	NSCLC(59;410 1274 8751 36715 50546)		NA											14	32					4.3838e-07	5.25178e-07	0.001855	1	0
PGK2	5232	broad.mit.edu	37	6	49754060	49754060	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:49754060T>A	uc003ozu.2	-	1	948	c.841A>T	c.(841-843)ACT>TCT	p.T281S		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	281					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					ACAGGAAAAGTAATCCTTACA	0.443			NA											32	284					0	0	0.002445	0	0
PKHD1	5314	broad.mit.edu	37	6	51751937	51751937	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:51751937C>A	uc003pah.1	-	44	7379	c.7103G>T	c.(7102-7104)TGT>TTT	p.C2368F	PKHD1_uc010jzn.1_Missense_Mutation_p.C351F|PKHD1_uc003pai.2_Missense_Mutation_p.C2368F	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2368	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TTACCTGGTACAAGAATGTGC	0.413			NA											4	62					1.6384e-10	2.13627e-10	0.001984	1	0
C6orf142	90523	broad.mit.edu	37	6	54025355	54025355	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:54025355C>G	uc003pcg.3	+	6	905	c.792C>G	c.(790-792)CTC>CTG	p.L264L	C6orf142_uc003pcf.2_Silent_p.L788L|C6orf142_uc003pch.3_Intron|C6orf142_uc011dxa.1_Silent_p.L799L	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	264						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CTGAAGAGCTCTGTGCTACCA	0.393			NA											9	41					0	0	0.000978	0	0
HCRTR2	3062	broad.mit.edu	37	6	55113470	55113470	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:55113470G>T	uc003pcl.2	+	2	572	c.257G>T	c.(256-258)AGG>ATG	p.R86M	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.R21M	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	86	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CACCACATGAGGACGGTAACC	0.453			NA											13	139					3.27435e-08	4.07685e-08	0.00245	1	0
KHDRBS2	202559	broad.mit.edu	37	6	62611152	62611152	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:62611152G>A	uc003peg.2	-	5	855	c.608C>T	c.(607-609)TCA>TTA	p.S203L		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	203					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		AATGTACCTTGAAGGAGCTGT	0.403			NA											15	120					0	0	0.004007	0	0
B3GAT2	135152	broad.mit.edu	37	6	71571616	71571616	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:71571616G>A	uc003pfv.2	-	3	1458	c.802C>T	c.(802-804)CAG>TAG	p.Q268*	SMAP1_uc003pfr.2_3'UTR|SMAP1_uc003pfs.2_3'UTR|SMAP1_uc010kao.2_3'UTR|SMAP1_uc010kap.2_3'UTR|B3GAT2_uc011dxz.1_RNA|B3GAT2_uc003pfw.2_Nonsense_Mutation_p.Q268*	NM_080742	NP_542780	Q9NPZ5	B3GA2_HUMAN	beta-1,3-glucuronyltransferase 2	268	Lumenal (Potential).				carbohydrate biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						ATCCCTGGCTGGGATCCACGA	0.363			NA											13	88					0	0	0.00245	0	0
TTK	7272	broad.mit.edu	37	6	80745021	80745021	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:80745021G>T	uc003pjc.2	+	16	1885	c.1811G>T	c.(1810-1812)TGT>TTT	p.C604F	TTK_uc003pjb.3_Missense_Mutation_p.C603F	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	604	Protein kinase.				mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		GTAATGGAGTGTGGAAATATT	0.328			NA											8	82					0.000442599	0.00048004	0.006214	1	0
FAM46A	55603	broad.mit.edu	37	6	82461348	82461348	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:82461348C>T	uc003pjg.2	-	2	829	c.511G>A	c.(511-513)GAG>AAG	p.E171K	FAM46A_uc003pjf.2_Missense_Mutation_p.E190K|FAM46A_uc003pjh.1_Missense_Mutation_p.E171K	NM_017633	NP_060103	Q96IP4	FA46A_HUMAN	hypothetical protein LOC55603	171											0		all_cancers(76;6.74e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000282)|all_epithelial(107;0.0104)		BRCA - Breast invasive adenocarcinoma(397;0.0428)		TTCACCCCCTCGGGTAAGAAG	0.597			NA											13	134					0	0	0.001368	0	0
BVES	11149	broad.mit.edu	37	6	105581345	105581345	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:105581345G>C	uc003pqw.2	-	2	265	c.108C>G	c.(106-108)AAC>AAG	p.N36K	BVES_uc003pqx.2_Missense_Mutation_p.N36K|BVES_uc003pqy.2_Missense_Mutation_p.N36K	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	36	Extracellular (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				TCTCTCTCCAGTTTTCACAAG	0.378			NA											13	119					0	0	0.004007	0	0
BVES	11149	broad.mit.edu	37	6	105581378	105581378	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:105581378T>A	uc003pqw.2	-	2	232	c.75A>T	c.(73-75)ATA>ATT	p.I25I	BVES_uc003pqx.2_Silent_p.I25I|BVES_uc003pqy.2_Silent_p.I25I	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	25	Extracellular (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				AAGGCACAGGTATGATACTTT	0.363			NA											17	119					0	0	0.004007	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368494	111368494	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:111368494C>T	uc003puq.2	-	1	264	c.129G>A	c.(127-129)CTG>CTA	p.L43L		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						CAATGCAGCCCAGGATGGCCT	0.527			NA											8	126					0	0	0.006214	0	0
REV3L	5980	broad.mit.edu	37	6	111695285	111695285	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:111695285T>A	uc003puy.3	-	13	4596	c.4273A>T	c.(4273-4275)AGT>TGT	p.S1425C	REV3L_uc003pux.3_Missense_Mutation_p.S1347C|REV3L_uc003puz.3_Missense_Mutation_p.S1347C	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1425					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TGCTGCTGACTGTCTTTGCAA	0.403			NA						DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					21	205					0	0	0.00278	0	0
LAMA4	3910	broad.mit.edu	37	6	112462651	112462651	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:112462651A>G	uc003pvu.2	-	21	3031	c.2722T>C	c.(2722-2724)TAT>CAT	p.Y908H	LAMA4_uc003pvv.2_Missense_Mutation_p.Y901H|LAMA4_uc003pvt.2_Missense_Mutation_p.Y901H	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	908	Laminin G-like 1.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		CCCAAATTATAGACGTATACC	0.373			NA											5	79					0	0	0.000602	0	0
GPRC6A	222545	broad.mit.edu	37	6	117121902	117121902	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:117121902C>T	uc003pxj.1	-	4	1415	c.1393G>A	c.(1393-1395)GAT>AAT	p.D465N	GPRC6A_uc003pxk.1_Missense_Mutation_p.D290N|GPRC6A_uc003pxl.1_Intron	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	465	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CCGTGAGCATCAAAATGAAAT	0.343			NA											14	74					0	0	0.004007	0	0
DCBLD1	285761	broad.mit.edu	37	6	117864321	117864321	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:117864321G>T	uc003pxs.2	+	12	1517	c.1392G>T	c.(1390-1392)GTG>GTT	p.V464V	GOPC_uc003pxq.1_Intron|DCBLD1_uc003pxr.1_Silent_p.V464V|DCBLD1_uc003pxt.1_Silent_p.V119V	NM_173674	NP_775945	Q8N8Z6	DCBD1_HUMAN	discoidin, CUB and LCCL domain containing 1	464	Helical; (Potential).				cell adhesion	integral to membrane				ovary(1)	1		all_cancers(87;0.171)		GBM - Glioblastoma multiforme(226;0.0447)|OV - Ovarian serous cystadenocarcinoma(136;0.0921)|all cancers(137;0.125)		TTCCATTGGTGCTCCTTGTTG	0.378			NA											39	313					3.86361e-14	5.46076e-14	0.00361	1	0
LAMA2	3908	broad.mit.edu	37	6	129637025	129637025	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:129637025G>T	uc003qbn.2	+	26	3959	c.3854G>T	c.(3853-3855)AGA>ATA	p.R1285I	LAMA2_uc003qbo.2_Missense_Mutation_p.R1285I	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1285	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ACTCATGCTAGAATTATCGTC	0.413			NA											29	107					5.45727e-16	7.88923e-16	0.008361	1	0
LAMA2	3908	broad.mit.edu	37	6	129777622	129777622	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:129777622C>A	uc003qbn.2	+	47	6955	c.6850C>A	c.(6850-6852)CTG>ATG	p.L2284M	LAMA2_uc003qbo.2_Missense_Mutation_p.L2284M	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2284	Laminin G-like 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGTTGGTGGCCTGACTGGGAA	0.443			NA											36	368					5.71845e-15	8.17898e-15	0.005524	1	0
SAMD3	154075	broad.mit.edu	37	6	130465809	130465809	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:130465809A>T	uc003qbv.2	-	13	1745	c.1419T>A	c.(1417-1419)TTT>TTA	p.F473L	SAMD3_uc003qbx.2_Missense_Mutation_p.F473L|SAMD3_uc003qbw.2_Missense_Mutation_p.F473L	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	473										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TAAATACATGAAAGGCAGCTA	0.423			NA											34	71					0	0	0.003271	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762082	130762082	+	Missense_Mutation	SNP	C	C	A	rs149308469		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:130762082C>A	uc003qca.2	+	3	1386	c.515C>A	c.(514-516)ACG>AAG	p.T172K	TMEM200A_uc010kfh.2_Missense_Mutation_p.T172K|TMEM200A_uc010kfi.2_Missense_Mutation_p.T172K|TMEM200A_uc003qcb.2_Missense_Mutation_p.T172K	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	172	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GACATTCACACGCTAAGAATC	0.413			NA											10	103					4.68919e-08	5.80489e-08	0.008291	1	0
ARG1	383	broad.mit.edu	37	6	131894469	131894469	+	Nonsense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:131894469C>G	uc003qcp.1	+	1	105	c.47C>G	c.(46-48)TCA>TGA	p.S16*	ARG1_uc003qco.1_Nonsense_Mutation_p.S16*|ARG1_uc010kfm.1_Nonsense_Mutation_p.S16*	NM_000045	NP_000036	P05089	ARGI1_HUMAN	arginase 1	16					arginine catabolic process|urea cycle	cytosol	arginase activity			ovary(1)	1	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0106)|OV - Ovarian serous cystadenocarcinoma(155;0.0713)	L-Ornithine(DB00129)	GCTCCTTTCTCAAAGGGACAG	0.408			NA											4	71					0	0	0.001168	0	0
MOXD1	26002	broad.mit.edu	37	6	132619061	132619061	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:132619061T>A	uc003qdf.2	-	11	1641	c.1542A>T	c.(1540-1542)CAA>CAT	p.Q514H	MOXD1_uc003qde.2_Missense_Mutation_p.Q446H	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	514	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		GGTTTTTATATTGCTTGGGAC	0.368			NA											8	60					0	0	0.004482	0	0
EYA4	2070	broad.mit.edu	37	6	133834083	133834083	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:133834083G>T	uc003qec.3	+	16	1866	c.1408G>T	c.(1408-1410)GGT>TGT	p.G470C	EYA4_uc011ecq.1_Missense_Mutation_p.G416C|EYA4_uc011ecr.1_Missense_Mutation_p.G422C|EYA4_uc003qed.3_Missense_Mutation_p.G470C|EYA4_uc003qee.3_Missense_Mutation_p.G447C|EYA4_uc011ecs.1_Missense_Mutation_p.G476C|uc003qeg.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	470					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TTTGCCAACAGGTGTAAGAGG	0.398	Melanoma(57;398 1237 3528 4702 7415)		NA											25	49					4.72057e-08	5.83703e-08	0.003954	1	0
Unknown	0	broad.mit.edu	37	6	139094657	139094657	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:139094657G>A	uc003qid.1	-	1	133	c.31C>T	c.(31-33)CCC>TCC	p.P11S	CCDC28A_uc003qie.2_5'UTR					Homo sapiens cDNA FLJ35273 fis, clone PROST2006020.												NA						CTCACCGAGGGGCGGAGTAGC	0.557			NA											6	11					0	0	0.001168	0	0
CCDC28A	25901	broad.mit.edu	37	6	139100986	139100986	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:139100986G>T	uc003qie.2	+	3	611	c.456G>T	c.(454-456)CAG>CAT	p.Q152H		NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	152											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		CCAAACCTCAGGGTGGAGAGG	0.433			NA											20	74					1.50039e-11	2.01738e-11	0.001882	1	0
MTHFD1L	25902	broad.mit.edu	37	6	151413614	151413614	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:151413614G>T	uc003qob.2	+	27	3127	c.2859G>T	c.(2857-2859)ATG>ATT	p.M953I	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Missense_Mutation_p.M954I|MTHFD1L_uc003qoc.2_Missense_Mutation_p.M901I	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	953	Formyltetrahydrofolate synthetase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		TGAGCACCATGCCAGGACTGC	0.458			NA											29	94					2.65835e-16	3.87421e-16	0.007291	1	0
SYNE1	23345	broad.mit.edu	37	6	152599233	152599233	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:152599233G>A	uc010kiw.2	-	98	19166	c.18564C>T	c.(18562-18564)CTC>CTT	p.L6188L	SYNE1_uc010kiv.2_Silent_p.L712L|SYNE1_uc003qos.3_Silent_p.L712L|SYNE1_uc003qot.3_Silent_p.L6117L|SYNE1_uc003qou.3_Silent_p.L6188L|SYNE1_uc010kiy.1_Silent_p.L367L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6188	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCTGCATGTTGAGCTGCTTAT	0.577			NA								HNSCC(10;0.0054)			19	205					0	0	0.006122	0	0
SYNE1	23345	broad.mit.edu	37	6	152686025	152686025	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:152686025C>A	uc010kiw.2	-	63	10704	c.10102G>T	c.(10102-10104)GAT>TAT	p.D3368Y	SYNE1_uc003qot.3_Missense_Mutation_p.D3375Y|SYNE1_uc003qou.3_Missense_Mutation_p.D3368Y|SYNE1_uc010kja.1_Missense_Mutation_p.D73Y	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3368	Spectrin 7.|HAT 6.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCCCACATATCCTTCACACTC	0.438			NA								HNSCC(10;0.0054)			35	119					6.97489e-18	1.039e-17	0.004878	1	0
SYNE1	23345	broad.mit.edu	37	6	152809592	152809592	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:152809592T>A	uc010kiw.2	-	12	1588	c.986A>T	c.(985-987)CAA>CTA	p.Q329L	SYNE1_uc003qot.3_Missense_Mutation_p.Q336L|SYNE1_uc003qou.3_Missense_Mutation_p.Q329L|SYNE1_uc010kjb.1_Missense_Mutation_p.Q312L|SYNE1_uc003qpa.1_Missense_Mutation_p.Q329L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	329	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCTCTCAAATTGTTCTATCCA	0.299			NA								HNSCC(10;0.0054)			10	61					0	0	0.006214	0	0
RBM16	22828	broad.mit.edu	37	6	155145395	155145395	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:155145395G>T	uc003qqa.2	+	18	2186	c.1954G>T	c.(1954-1956)GTT>TTT	p.V652F	RBM16_uc011efj.1_Missense_Mutation_p.V718F|RBM16_uc011efk.1_Missense_Mutation_p.V697F|RBM16_uc003qpz.2_Missense_Mutation_p.V652F|RBM16_uc010kji.2_Missense_Mutation_p.V673F	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	652	Pro-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		CGTGCCTACAGTTAGTTTAGT	0.453			NA											39	170					5.48756e-27	8.7948e-27	0.002852	1	0
ZDHHC14	79683	broad.mit.edu	37	6	157963732	157963732	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:157963732C>T	uc003qqt.2	+	2	858	c.361C>T	c.(361-363)CCA>TCA	p.P121S	ZDHHC14_uc003qqs.2_Missense_Mutation_p.P121S|ZDHHC14_uc010kjm.1_Missense_Mutation_p.P16S	NM_024630	NP_078906	Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14 isoform 1	121						integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|skin(1)	2		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		CGGAGTCCTCCCACGAGCCAC	0.602			NA											7	18					0	0	0.004482	0	0
SLC22A2	6582	broad.mit.edu	37	6	160677683	160677683	+	Missense_Mutation	SNP	A	A	G	rs8177509		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:160677683A>G	uc003qtf.2	-	2	651	c.481T>C	c.(481-483)TTT>CTT	p.F161L	SLC22A2_uc003qte.1_Missense_Mutation_p.F161L|SLC22A2_uc003qth.1_Missense_Mutation_p.F161L	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	161	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GAGCCAATAAAGAATCCTACA	0.458			NA											32	93					0	0	0.005524	0	0
PLG	5340	broad.mit.edu	37	6	161139844	161139844	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:161139844T>A	uc003qtm.3	+	9	1133	c.1070T>A	c.(1069-1071)GTA>GAA	p.V357E		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	357					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TCCTCCCCAGTATCCACGGAA	0.517			NA											6	69					0	0	0.001168	0	0
PLG	5340	broad.mit.edu	37	6	161158002	161158002	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:161158002C>A	uc003qtm.3	+	14	1828	c.1765C>A	c.(1765-1767)CCA>ACA	p.P589T		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	589	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TGTGGCCCACCCACATTCCTG	0.542			NA											17	77					0.00741294	0.00776628	0.007413	1	0
MLLT4	4301	broad.mit.edu	37	6	168352255	168352255	+	Silent	SNP	G	G	T	rs145659193	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:168352255G>T	uc003qwd.2	+	29	4339	c.4197G>T	c.(4195-4197)CCG>CCT	p.P1399P	MLLT4_uc003qwb.1_Silent_p.P1384P|MLLT4_uc003qwc.1_Silent_p.P1400P|MLLT4_uc003qwg.1_Silent_p.P709P	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1400					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		TAGGGCTGCCGTCTGCGCAGG	0.602			NA	T	MLL	AL								36	94					1.03484e-13	1.45309e-13	0.005524	1	0
SMOC2	64094	broad.mit.edu	37	6	168910593	168910593	+	Splice_Site	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:168910593A>C	uc003qws.1	+	2	105	c.85_splice	c.e2-2	p.F29_splice	SMOC2_uc003qwr.1_Splice_Site_p.F29_splice	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2						signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		TTCTCCTTTAAGTTTTTGAGA	0.463			NA											8	108					0	0	0.006214	0	0
PDCD2	5134	broad.mit.edu	37	6	170889182	170889182	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:170889182C>T	uc003qxw.2	-	4	749	c.670G>A	c.(670-672)GAG>AAG	p.E224K	PDCD2_uc003qxv.2_Missense_Mutation_p.E191K|PDCD2_uc003qxx.1_Missense_Mutation_p.E224K	NM_002598	NP_002589	Q16342	PDCD2_HUMAN	programmed cell death 2 isoform 1	224					apoptosis	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding				0		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.91e-23)|BRCA - Breast invasive adenocarcinoma(81;4.82e-06)|GBM - Glioblastoma multiforme(31;0.142)		AGTTCTTCCTCAAGTGCTTCA	0.388	Colon(60;1476 1726 39478)		NA											5	55					0	0	0.000602	0	0
PRKAR1B	5575	broad.mit.edu	37	7	624175	624175	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:624175C>T	uc003siu.1	-	9	845	c.739G>A	c.(739-741)GAG>AAG	p.E247K	PRKAR1B_uc003siv.2_Missense_Mutation_p.E247K|PRKAR1B_uc003siw.1_Missense_Mutation_p.E247K|PRKAR1B_uc003six.1_RNA	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	247	cAMP 1.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		AGGAACTCCTCGTACATCTTG	0.567			NA											9	46					0	0	0.000978	0	0
LFNG	3955	broad.mit.edu	37	7	2559920	2559920	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:2559920A>G	uc003smf.2	+	1	442	c.425A>G	c.(424-426)AAG>AGG	p.K142R	LFNG_uc003smg.2_Missense_Mutation_p.K142R	NM_001040167	NP_001035257	Q8NES3	LFNG_HUMAN	lunatic fringe isoform a	142	Lumenal (Potential).				organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		TCGCGCCACAAGGAGATGGTG	0.622			NA											5	64					0	0	0.00308	0	0
RADIL	55698	broad.mit.edu	37	7	4917651	4917651	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:4917651G>A	uc003snj.1	-	2	293	c.120C>T	c.(118-120)GAC>GAT	p.D40D	RADIL_uc003sng.1_RNA|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	40					cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		AGAAGGTGGAGTCCAGGTCCC	0.632			NA											9	30					0	0	0.008291	0	0
COL28A1	340267	broad.mit.edu	37	7	7420475	7420475	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:7420475C>A	uc003src.1	-	29	2341	c.2224G>T	c.(2224-2226)GGC>TGC	p.G742C	COL28A1_uc011jxe.1_Missense_Mutation_p.G425C	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	742	Collagen-like 6.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCCACATCGCCCCGTTCTCCG	0.398			NA											37	263					4.14481e-20	6.29613e-20	0.00623	1	0
ABCB5	340273	broad.mit.edu	37	7	20666195	20666195	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:20666195G>T	uc010kuh.2	+	3	306	c.69G>T	c.(67-69)CAG>CAT	p.Q23H		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	Error:Variant_position_missing_in_Q2M3G0_after_alignment					regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CAGAAGAACAGCCAAAACTGA	0.333			NA											7	21					0.00198382	0.00210086	0.001984	1	0
DNAH11	8701	broad.mit.edu	37	7	21750234	21750234	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:21750234G>A	uc003svc.2	+	42	6799	c.6768G>A	c.(6766-6768)AAG>AAA	p.K2256K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2256	AAA 2 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CAAATCTTAAGCATGATGGAC	0.353			NA							Kartagener_syndrome				6	42					0	0	0.001984	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23390963	23390963	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:23390963C>A	uc003swg.2	-	6	910	c.644G>T	c.(643-645)GGT>GTT	p.G215V		NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	215	KH 1.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						AATGGTGGCACCTTCTTTTCC	0.498			NA											46	120					1.56793e-16	2.30038e-16	0.00361	1	0
STK31	56164	broad.mit.edu	37	7	23775440	23775440	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:23775440A>G	uc003sws.3	+	7	834	c.767A>G	c.(766-768)AAG>AGG	p.K256R	STK31_uc003swt.3_Missense_Mutation_p.K233R|STK31_uc011jze.1_Missense_Mutation_p.K256R|STK31_uc010kuq.2_Missense_Mutation_p.K233R	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	256							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AGCAGGCCCAAGGGGCACTTA	0.403			NA											16	181					0	0	0.00499	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27827131	27827131	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:27827131C>G	uc003szl.2	+	8	1105	c.947C>G	c.(946-948)ACT>AGT	p.T316S	TAX1BP1_uc011jzo.1_Missense_Mutation_p.T316S|TAX1BP1_uc003szk.2_Missense_Mutation_p.T316S|TAX1BP1_uc011jzp.1_Missense_Mutation_p.T159S	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	316	Potential.				anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			AGCGTGATTACTCATTTCAAA	0.353			NA											8	150					0	0	0.004482	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378156	31378156	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:31378156A>C	uc003tch.2	-	2	1080	c.727T>G	c.(727-729)TTC>GTC	p.F243V		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	243					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						CTTTCATAGAAGGATTCATAC	0.478			NA											13	203					0	0	0.001855	0	0
PDE1C	5137	broad.mit.edu	37	7	31867988	31867988	+	Splice_Site	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:31867988C>G	uc003tcm.1	-	12	1673	c.1204_splice	c.e12-1	p.G402_splice	PDE1C_uc003tcn.1_Splice_Site_p.G402_splice|PDE1C_uc003tco.1_Splice_Site_p.G462_splice|PDE1C_uc003tcr.2_Splice_Site_p.G402_splice|PDE1C_uc003tcs.2_Splice_Site_p.G402_splice	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C						activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CTCTGTCACCCTGGAAAAATA	0.478			NA											8	68					0	0	0.004482	0	0
BBS9	27241	broad.mit.edu	37	7	33384214	33384214	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:33384214G>A	uc003tdn.1	+	12	1810	c.1297G>A	c.(1297-1299)GGA>AGA	p.G433R	BBS9_uc003tdo.1_Missense_Mutation_p.G433R|BBS9_uc003tdp.1_Missense_Mutation_p.G433R|BBS9_uc003tdq.1_Missense_Mutation_p.G433R|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_5'UTR|BBS9_uc011kao.1_Missense_Mutation_p.G311R	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	433					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			TGTTGAGGTGGGAACTGACCT	0.398			NA							Bardet-Biedl_syndrome				70	214					0	0	0.00361	0	0
BBS9	27241	broad.mit.edu	37	7	33545228	33545228	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:33545228C>T	uc003tdn.1	+	20	2782	c.2269C>T	c.(2269-2271)CTG>TTG	p.L757L	BBS9_uc003tdo.1_Silent_p.L722L|BBS9_uc003tdp.1_Silent_p.L752L|BBS9_uc003tdq.1_Silent_p.L717L|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_Silent_p.L281L|BBS9_uc003tds.1_Silent_p.L180L|BBS9_uc003tdt.2_RNA	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	757					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			AGCGGCATTTCTGCCGCTACA	0.488			NA							Bardet-Biedl_syndrome				8	99					0	0	0.00308	0	0
NPSR1	387129	broad.mit.edu	37	7	34867094	34867094	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:34867094A>G	uc003teg.1	+	5	688	c.560A>G	c.(559-561)AAG>AGG	p.K187R	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.K187R|NPSR1_uc010kwt.1_Missense_Mutation_p.K34R|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.K121R|NPSR1_uc003tei.1_Missense_Mutation_p.K187R|NPSR1_uc010kww.1_Missense_Mutation_p.K176R|NPSR1_uc011kar.1_Missense_Mutation_p.K121R|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	187	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	ATATTTGGGAAGAGGACACTG	0.537			NA											10	169					0	0	0.008291	0	0
AOAH	313	broad.mit.edu	37	7	36571916	36571916	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:36571916C>G	uc003tfh.3	-	17	1742	c.1341G>C	c.(1339-1341)TTG>TTC	p.L447F	AOAH_uc010kxf.2_Missense_Mutation_p.L447F|AOAH_uc011kba.1_Missense_Mutation_p.L415F	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	447					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GGAAGGAGTACAACTGCGCAT	0.507			NA											33	208					0	0	0.005524	0	0
INHBA	3624	broad.mit.edu	37	7	41739824	41739824	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:41739824G>T	uc003thq.2	-	1	384	c.149C>A	c.(148-150)TCT>TAT	p.S50Y	LOC285954_uc003tht.3_Intron|INHBA_uc003thr.2_Missense_Mutation_p.S50Y|LOC285954_uc003ths.2_Intron	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	50					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CTCTGGCTGAGAGTTGGGTAC	0.612			NA								TSP Lung(11;0.080)			62	798					7.91745e-34	1.30784e-33	0.00361	1	0
URGCP	55665	broad.mit.edu	37	7	43916853	43916853	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:43916853C>G	uc003tiw.2	-	6	2266	c.2209G>C	c.(2209-2211)GAG>CAG	p.E737Q	URGCP_uc003tiu.2_Missense_Mutation_p.E694Q|URGCP_uc003tiv.2_Missense_Mutation_p.E662Q|URGCP_uc003tix.2_Missense_Mutation_p.E728Q|URGCP_uc003tiy.2_Missense_Mutation_p.E694Q|URGCP_uc003tiz.2_Missense_Mutation_p.E694Q|URGCP_uc011kbj.1_Missense_Mutation_p.E694Q	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	737					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						CTGAAGCCCTCAGCCACTGTG	0.602			NA											5	129					0	0	0.00308	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579392	44579392	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:44579392A>G	uc003tlb.2	-	2	660	c.604T>C	c.(604-606)TGG>CGG	p.W202R	NPC1L1_uc003tlc.2_Missense_Mutation_p.W202R|NPC1L1_uc011kbw.1_Missense_Mutation_p.W202R|NPC1L1_uc003tld.2_Missense_Mutation_p.W202R	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	202	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AAGTTGAGCCAGCGCTGGGCA	0.637			NA											13	199					0	0	0.003163	0	0
PKD1L1	168507	broad.mit.edu	37	7	47867068	47867068	+	Splice_Site	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:47867068T>A	uc003tny.1	-	45	6736	c.6736_splice	c.e45-1	p.V2246_splice	C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Splice_Site	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1						cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGCCAAGACCTGTCAGGGACA	0.622			NA											7	35					0	0	0.004482	0	0
ABCA13	154664	broad.mit.edu	37	7	48563921	48563921	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:48563921A>C	uc003toq.2	+	54	14154	c.14129A>C	c.(14128-14130)GAA>GCA	p.E4710A	ABCA13_uc010kys.1_Missense_Mutation_p.E1785A|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.E440A	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4710					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGAGTGTTTGAAGGAAGGACC	0.388			NA											3	34					0	0	0.004672	0	0
ZNF679	168417	broad.mit.edu	37	7	63720657	63720657	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:63720657T>A	uc003tsx.2	+	3	367	c.98T>A	c.(97-99)CTG>CAG	p.L33Q		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	33	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGGCAATGCCTGGATCACGCT	0.393			NA											6	139					0	0	0.00308	0	0
ZNF679	168417	broad.mit.edu	37	7	63720698	63720698	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:63720698G>C	uc003tsx.2	+	3	408	c.139G>C	c.(139-141)GAG>CAG	p.E47Q		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	47	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGTGATGTTAGAGAACTACAG	0.378			NA											11	162					0	0	0.001855	0	0
LOC168474	168474	broad.mit.edu	37	7	64313133	64313133	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:64313133G>T	uc003ttj.1	-	1	1046	c.494C>A	c.(493-495)CCC>CAC	p.P165H		NR_002789				SubName: Full=Selenophosphate synthetase 1; SubName: Full=Selenophosphate synthetase 1, isoform CRA_a;												0						TGTCCCCAGGGGTTTTGTCAA	0.488			NA											19	42					1.30897e-18	1.958e-18	0.009535	1	0
RABGEF1	27342	broad.mit.edu	37	7	66240233	66240233	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:66240233G>C	uc011kee.1	+	3	405	c.241G>C	c.(241-243)GAG>CAG	p.E81Q	RABGEF1_uc003tvf.2_5'UTR|RABGEF1_uc003tvg.2_5'UTR|RABGEF1_uc010lag.2_Missense_Mutation_p.E67Q|RABGEF1_uc003tvh.2_Missense_Mutation_p.E67Q|RABGEF1_uc003tvi.2_5'UTR	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1	245	Interaction with ubiquitinated proteins.				endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						GGAGGAAGAAGAGGCCTTTGC	0.463			NA											10	103					0	0	0.001368	0	0
SRCRB4D	136853	broad.mit.edu	37	7	76019533	76019533	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:76019533C>G	uc003ufb.2	-	11	1919	c.1571G>C	c.(1570-1572)GGC>GCC	p.G524A	SRCRB4D_uc003ufa.2_Missense_Mutation_p.A26P	NM_080744	NP_542782	Q8WTU2	SRB4D_HUMAN	scavenger receptor cysteine rich domain	524	SRCR 4.					extracellular region|membrane	scavenger receptor activity			pancreas(1)	1						GTGAGCCTCGCCAGGGGCTGC	0.657			NA											8	95					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82474669	82474669	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:82474669G>T	uc003uhx.2	-	13	14253	c.13964C>A	c.(13963-13965)ACA>AAA	p.T4655K	PCLO_uc003uhv.2_Missense_Mutation_p.T4655K|PCLO_uc003uht.1_Missense_Mutation_p.T106K|PCLO_uc003uhu.1_Missense_Mutation_p.T85K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4543					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCCTGCTGATGTAGGACCTGA	0.517			NA											6	84					8.12818e-05	9.0248e-05	0.001984	1	0
SEMA3E	9723	broad.mit.edu	37	7	83036465	83036465	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:83036465T>A	uc003uhy.1	-	7	1227	c.761A>T	c.(760-762)GAG>GTG	p.E254V		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	254	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GTTTTCTGCCTCCAGTGCCTT	0.413			NA											26	61					0	0	0.005443	0	0
GRM3	2913	broad.mit.edu	37	7	86416434	86416434	+	Splice_Site	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:86416434T>G	uc003uid.2	+	3	2423	c.1324_splice	c.e3+2	p.A442_splice	GRM3_uc010lef.2_Splice_Site_p.G440_splice|GRM3_uc010leg.2_Splice_Site_p.A314_splice|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor						synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ACTTCACGGGTAAGCCAAGAG	0.403	GBM(52;969 1098 3139 52280)		NA											10	199					0	0	0.001855	0	0
ABCB1	5243	broad.mit.edu	37	7	87195392	87195392	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:87195392C>A	uc003uiz.1	-	8	1114	c.696G>T	c.(694-696)TGG>TGT	p.W232C	ABCB1_uc011khc.1_Missense_Mutation_p.W168C	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	232	ABC transmembrane type-1 1.|Helical; (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CTACCTTTGCCCAGACAGCAG	0.463			NA											7	91					8.12818e-05	9.0248e-05	0.001984	1	0
AKAP9	10142	broad.mit.edu	37	7	91641910	91641910	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:91641910G>T	uc003ulg.2	+	9	3711	c.3486G>T	c.(3484-3486)CAG>CAT	p.Q1162H	AKAP9_uc003ule.2_Missense_Mutation_p.Q1174H|AKAP9_uc003ulf.2_Missense_Mutation_p.Q1162H|AKAP9_uc003uli.2_Missense_Mutation_p.Q787H	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1174	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding	p.Q1174H(1)|p.Q1162H(1)		breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGGAACTTCAGAAAATACACC	0.328			NA	T	BRAF	papillary thyroid								16	118					0.000422831	0.000459062	0.004007	1	0
AKAP9	10142	broad.mit.edu	37	7	91667800	91667800	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:91667800A>G	uc003ulg.2	+	17	4631	c.4406A>G	c.(4405-4407)GAA>GGA	p.E1469G	AKAP9_uc003ule.2_Missense_Mutation_p.E1481G|AKAP9_uc003ulf.2_Missense_Mutation_p.E1469G|AKAP9_uc003uli.2_Missense_Mutation_p.E1094G	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1481					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGGGGAAAAGAAAATACTGCA	0.328			NA	T	BRAF	papillary thyroid								13	181					0	0	0.003163	0	0
PEX1	5189	broad.mit.edu	37	7	92118631	92118631	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:92118631T>C	uc003uly.2	-	23	3839	c.3743A>G	c.(3742-3744)GAT>GGT	p.D1248G	PEX1_uc011khr.1_Missense_Mutation_p.D1040G|PEX1_uc010ley.2_Missense_Mutation_p.D1191G|PEX1_uc011khs.1_Missense_Mutation_p.D926G	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	1248					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			CTTCCAGTCATCTTCACTAAT	0.378			NA											6	76					0	0	0.00308	0	0
SAMD9	54809	broad.mit.edu	37	7	92732395	92732395	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:92732395G>T	uc003umf.2	-	3	3272	c.3016C>A	c.(3016-3018)CAA>AAA	p.Q1006K	SAMD9_uc003umg.2_Missense_Mutation_p.Q1006K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1006						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AACATAATTTGACTTTTATTC	0.373			NA											15	148					0.000219431	0.00024066	0.00245	1	0
SAMD9	54809	broad.mit.edu	37	7	92732470	92732470	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:92732470C>A	uc003umf.2	-	3	3197	c.2941G>T	c.(2941-2943)GTA>TTA	p.V981L	SAMD9_uc003umg.2_Missense_Mutation_p.V981L	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	981						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ATGATGCGTACTCCACAGTAG	0.393			NA											43	160					3.86361e-14	5.46076e-14	0.00361	1	0
CALCR	799	broad.mit.edu	37	7	93090242	93090242	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:93090242C>G	uc003umv.1	-	9	902	c.641G>C	c.(640-642)AGG>ACG	p.R214T	CALCR_uc011kia.1_5'UTR|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.R180T|CALCR_uc003umw.2_Missense_Mutation_p.R180T	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	196	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CAGGGTTACCCTTTGGCAGCC	0.393			NA											30	239					0	0	0.002445	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539978	94539978	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:94539978A>G	uc003unp.2	+	2	835	c.553A>G	c.(553-555)ACT>GCT	p.T185A	PPP1R9A_uc010lfj.2_Missense_Mutation_p.T185A|PPP1R9A_uc011kif.1_Missense_Mutation_p.T185A|PPP1R9A_uc003unq.2_Missense_Mutation_p.T185A|PPP1R9A_uc011kig.1_Missense_Mutation_p.T185A	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	185						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			CAGAGGCAGTACTGATTCCTT	0.502			NA								HNSCC(28;0.073)			10	136					0	0	0.006214	0	0
CYP3A7	1551	broad.mit.edu	37	7	99332708	99332708	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:99332708G>A	uc003uru.2	-	1	114	c.9C>T	c.(7-9)CTC>CTT	p.L3L	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_5'UTR|CYP3A5_uc010lgg.2_Silent_p.L3L	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	3					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					AGTTTGGGATGAGATCCATCA	0.507			NA											8	151					0	0	0.00308	0	0
MUC17	140453	broad.mit.edu	37	7	100681105	100681105	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:100681105T>A	uc003uxp.1	+	3	6461	c.6408T>A	c.(6406-6408)TCT>TCA	p.S2136S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2136	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|34.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGATCACTTCTACTGAAGTCA	0.468			NA											151	524					0	0	0.00361	0	0
MUC17	140453	broad.mit.edu	37	7	100683741	100683741	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:100683741G>T	uc003uxp.1	+	3	9097	c.9044G>T	c.(9043-9045)AGC>ATC	p.S3015I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3015	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|49.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCTGACACCAGCACACCTGTG	0.502			NA											36	793					3.78316e-11	5.024e-11	0.00623	1	0
TRIM56	81844	broad.mit.edu	37	7	100732027	100732027	+	Silent	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:100732027G>C	uc003uxq.2	+	3	1665	c.1434G>C	c.(1432-1434)CTG>CTC	p.L478L	TRIM56_uc003uxr.2_Intron	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	478					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					GCCCAGCCCTGGGGCCGAATC	0.622	Ovarian(89;1092 1379 22756 38989 39611)		NA											91	290					0	0	0.00361	0	0
MOGAT3	346606	broad.mit.edu	37	7	100841620	100841620	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:100841620G>T	uc003uyc.2	-	5	687	c.520C>A	c.(520-522)CTG>ATG	p.L174M	MOGAT3_uc010lhr.2_Missense_Mutation_p.L174M	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	174					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					ATGAAGTCCAGGCTCTGGCGG	0.662			NA											29	93					8.58068e-18	1.27644e-17	0.007291	1	0
EMID2	136227	broad.mit.edu	37	7	101091001	101091001	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:101091001C>G	uc010lhy.1	+	3	504	c.312C>G	c.(310-312)TCC>TCG	p.S104S	EMID2_uc003uyo.1_Silent_p.S106S	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	106	EMI.					collagen				ovary(1)	1	Lung NSC(181;0.215)					ACAGAGTGTCCTACCGCACGG	0.617			NA											7	34					0	0	0.004482	0	0
RELN	5649	broad.mit.edu	37	7	103130329	103130329	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:103130329C>A	uc003vca.2	-	60	9783	c.9623G>T	c.(9622-9624)TGG>TTG	p.W3208L	RELN_uc010liz.2_Missense_Mutation_p.W3208L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3208					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTTCTGGATCCAGCGGAACTG	0.547	NSCLC(146;835 1944 15585 22231 52158)		NA											21	82					2.39556e-15	3.44462e-15	0.00278	1	0
SLC26A4	5172	broad.mit.edu	37	7	107323753	107323753	+	Missense_Mutation	SNP	G	G	T	rs138816005	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:107323753G>T	uc003vep.2	+	7	1096	c.872G>T	c.(871-873)CGG>CTG	p.R291L		NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	291	Cytoplasmic (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						TTAAATGATCGGTTTAGACAC	0.358			NA							Pendred_syndrome				28	239					7.63215e-27	1.22137e-26	0.009535	1	0
SLC26A3	1811	broad.mit.edu	37	7	107408247	107408247	+	Silent	SNP	C	C	T	rs142908255	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:107408247C>T	uc003ver.2	-	19	2380	c.2169G>A	c.(2167-2169)AAG>AAA	p.K723K	SLC26A3_uc003ves.2_Silent_p.K610K	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	723					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TGTAATCTTTCTTCATCAAAA	0.348			NA											11	167					0	0	0.001368	0	0
DOCK4	9732	broad.mit.edu	37	7	111638539	111638539	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:111638539T>A	uc003vfx.2	-	4	451	c.182A>T	c.(181-183)TAC>TTC	p.Y61F	DOCK4_uc003vfy.2_Missense_Mutation_p.Y61F|DOCK4_uc003vga.1_5'UTR|DOCK4_uc010ljt.1_Missense_Mutation_p.Y61F|DOCK4_uc003vgb.1_5'UTR	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	61	SH3.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				CAAGTGAACGTAGCTGGAAGG	0.388			NA											4	7					0	0	0.000602	0	0
ASZ1	136991	broad.mit.edu	37	7	117067469	117067469	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:117067469C>T	uc003vjb.2	-	1	109	c.46G>A	c.(46-48)GAG>AAG	p.E16K	ASZ1_uc011kno.1_Missense_Mutation_p.E16K|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	16					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TCGCTACTCTCGCCTCCGCCA	0.667			NA									OREG0003439	type=REGULATORY REGION|Gene=ASZ1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	6	101					0	0	0.001984	0	0
C7orf58	79974	broad.mit.edu	37	7	120781037	120781037	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:120781037A>T	uc003vjq.3	+	15	2303	c.1856A>T	c.(1855-1857)AAG>ATG	p.K619M	C7orf58_uc003vjs.3_Missense_Mutation_p.K619M|C7orf58_uc003vjt.3_Missense_Mutation_p.K399M	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	619						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TGTCTGTGCAAGGTGCACCTG	0.438			NA											7	31					0	0	0.004482	0	0
C7orf58	79974	broad.mit.edu	37	7	120876814	120876814	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:120876814C>A	uc003vjq.3	+	17	2549	c.2102C>A	c.(2101-2103)CCT>CAT	p.P701H	C7orf58_uc003vjs.3_Missense_Mutation_p.P701H|C7orf58_uc003vjt.3_Missense_Mutation_p.P481H	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	701						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GGGTTACAGCCTATTTCTTCT	0.358			NA											12	87					1.5842e-08	1.99554e-08	0.001855	1	0
ASB15	142685	broad.mit.edu	37	7	123267198	123267198	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:123267198G>T	uc003vku.1	+	9	1024	c.732G>T	c.(730-732)GCG>GCT	p.A244A	ASB15_uc003vkv.1_Silent_p.A244A|ASB15_uc003vkw.1_Silent_p.A244A	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	244	ANK 5.				intracellular signal transduction					skin(2)|lung(1)	3						ATGATGGGGCGTCGGTGCTGT	0.493			NA											53	145					5.73332e-34	9.48507e-34	0.00361	1	0
GRM8	2918	broad.mit.edu	37	7	126173711	126173711	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:126173711G>T	uc003vlr.2	-	8	2036	c.1725C>A	c.(1723-1725)ATC>ATA	p.I575I	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.I575I|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	575	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane		p.I575M(1)		lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ACTCCAATTTGATGATGGGGA	0.507			NA								HNSCC(24;0.065)			20	99					5.26018e-13	7.30053e-13	0.001882	1	0
PAX4	5078	broad.mit.edu	37	7	127253575	127253575	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:127253575C>A	uc010lld.1	-	5	756	c.550G>T	c.(550-552)GGG>TGG	p.G184W	PAX4_uc003vmf.2_Missense_Mutation_p.G182W|PAX4_uc003vmg.1_Missense_Mutation_p.G184W|PAX4_uc003vmh.2_Missense_Mutation_p.G182W	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	192	Homeobox.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGATACTGCCCACGCTGGAAC	0.577	Ovarian(113;737 1605 7858 27720 34092)		NA											36	60					6.2361e-21	9.59469e-21	0.007835	1	0
C7orf45	136263	broad.mit.edu	37	7	129853326	129853326	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:129853326G>A	uc003vpp.2	+	2	237	c.190G>A	c.(190-192)GAG>AAG	p.E64K		NM_145268	NP_660311	Q8WWF3	CG045_HUMAN	hypothetical protein LOC136263	64						integral to membrane					0	Melanoma(18;0.0435)					ACAGATGTCTGAGGATAAAAA	0.358			NA											28	210					0	0	0.008361	0	0
TSGA13	114960	broad.mit.edu	37	7	130364188	130364188	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:130364188A>G	uc003vqi.2	-	5	649	c.192T>C	c.(190-192)CCT>CCC	p.P64P	TSGA13_uc003vqj.2_Silent_p.P64P	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	64										ovary(2)	2	Melanoma(18;0.0435)					TGGCCTTCAAAGGCTTATAGT	0.438			NA											12	62					0	0	0.003163	0	0
PLXNA4	91584	broad.mit.edu	37	7	131870132	131870132	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:131870132G>C	uc003vra.3	-	16	3313	c.3084C>G	c.(3082-3084)ATC>ATG	p.I1028M		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1028	IPT/TIG 2.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GGTCCTGGTGGATCTTGGCCC	0.557			NA											30	133					0	0	0.009535	0	0
CALD1	800	broad.mit.edu	37	7	134617840	134617840	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:134617840G>T	uc003vrz.2	+	5	779	c.320G>T	c.(319-321)CGC>CTC	p.R107L	CALD1_uc003vry.2_Missense_Mutation_p.R107L|CALD1_uc003vsa.2_Missense_Mutation_p.R107L|CALD1_uc003vsb.2_Missense_Mutation_p.R107L|CALD1_uc010lmm.2_Missense_Mutation_p.R107L|CALD1_uc011kpt.1_Intron|CALD1_uc003vsc.2_Missense_Mutation_p.R101L|CALD1_uc003vsd.2_Missense_Mutation_p.R101L|CALD1_uc011kpu.1_Missense_Mutation_p.R112L|CALD1_uc011kpv.1_5'UTR|CALD1_uc003vse.2_5'UTR	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	107	Myosin and calmodulin-binding (By similarity).				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						GAGGAAAGACGCCAAAAACGC	0.557			NA											12	67					1.3612e-06	1.59871e-06	0.003163	1	0
DGKI	9162	broad.mit.edu	37	7	137080403	137080403	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:137080403G>T	uc003vtt.2	-	33	3023	c.3022C>A	c.(3022-3024)CGG>AGG	p.R1008R	DGKI_uc003vtu.2_Silent_p.R677R	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	1008	ANK 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CACACAGCCCGGTTCCGCTGG	0.562			NA											15	64					2.35188e-11	3.14655e-11	0.006122	1	0
AKR1D1	6718	broad.mit.edu	37	7	137776546	137776546	+	Silent	SNP	C	C	A	rs113371817		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:137776546C>A	uc003vtz.2	+	3	363	c.294C>A	c.(292-294)GTC>GTA	p.V98V	AKR1D1_uc011kqb.1_Silent_p.V98V|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Silent_p.V98V|AKR1D1_uc011kqf.1_Silent_p.V98V|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	98					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						CAGAGATGGTCCGCCCAACCC	0.463			NA											44	88					3.86361e-14	5.46076e-14	0.00361	1	0
SVOPL	136306	broad.mit.edu	37	7	138313080	138313080	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:138313080C>A	uc011kqh.1	-	10	892	c.892G>T	c.(892-894)GTT>TTT	p.V298F	SVOPL_uc003vue.2_Missense_Mutation_p.V146F	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	298	Helical; (Potential).					integral to membrane	transmembrane transporter activity				0						GCCAGGATAACCCCATAGTAG	0.562			NA											5	93					0.000157383	0.000173315	0.00308	1	0
WEE2	494551	broad.mit.edu	37	7	141424063	141424063	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:141424063G>A	uc003vwn.2	+	8	1615	c.1209G>A	c.(1207-1209)GAG>GAA	p.E403E	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	403	Protein kinase.				egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					TGGCTAATGAGATTTTGCAAG	0.373			NA											15	188					0	0	0.003163	0	0
MGAM	8972	broad.mit.edu	37	7	141805626	141805626	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:141805626G>C	uc003vwy.2	+	48	5563	c.5509G>C	c.(5509-5511)GAT>CAT	p.D1837H		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1837	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATTAAGCATCGATGTGACTGA	0.373			NA											18	157					0	0	0.001882	0	0
PRSS1	5644	broad.mit.edu	37	7	142460317	142460317	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:142460317C>T	uc003wak.2	+	4	507	c.490C>T	c.(490-492)CCT>TCT	p.P164S	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Missense_Mutation_p.P104S	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	164	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CCTGGATGCTCCTGTGCTGAG	0.522			NA							Hereditary_Pancreatitis				51	768					0	0	0.00361	0	0
PRSS1	5644	broad.mit.edu	37	7	142460411	142460411	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:142460411C>T	uc003wak.2	+	4	601	c.584C>T	c.(583-585)TCA>TTA	p.S195L	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Missense_Mutation_p.S135L	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	195	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			GGCAAGGATTCATGTCAGGTG	0.532			NA							Hereditary_Pancreatitis				11	236					0	0	0.001855	0	0
PIP	5304	broad.mit.edu	37	7	142829235	142829235	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:142829235G>T	uc003wcf.1	+	1	62	c.26G>T	c.(25-27)AGG>ATG	p.R9M		NM_002652	NP_002643	P12273	PIP_HUMAN	prolactin-induced protein precursor	9						extracellular region	actin binding			ovary(1)	1	Melanoma(164;0.059)	Ovarian(593;2.82e-05)|Breast(660;0.012)		BRCA - Breast invasive adenocarcinoma(188;0.0026)|LUSC - Lung squamous cell carcinoma(290;0.0733)|Lung(243;0.08)		CTCCTGTTCAGGGCCAGCCCT	0.557			NA											99	656					1.13638e-54	1.91831e-54	0.00361	1	0
TPK1	27010	broad.mit.edu	37	7	144245652	144245652	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:144245652C>A	uc003weq.2	-	8	648	c.545G>T	c.(544-546)TGG>TTG	p.W182L	TPK1_uc003weo.2_Missense_Mutation_p.W128L|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Missense_Mutation_p.W133L|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	182					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	AAGGCCACACCAATCACCCTC	0.438	Ovarian(45;88 1034 2073 5829 28455)		NA											12	85					5.50884e-06	6.33193e-06	0.001368	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147092811	147092811	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:147092811G>C	uc003weu.1	+	10	2125	c.1609G>C	c.(1609-1611)GCA>CCA	p.A537P		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	537	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATACGAAGTGGCACAAAGGAA	0.438			NA								HNSCC(39;0.1)			27	214					0	0	0.007291	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147914500	147914500	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:147914500C>T	uc003weu.1	+	19	3647	c.3131C>T	c.(3130-3132)CCG>CTG	p.P1044L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1044	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AACTCCCACCCGGACCTGGCA	0.562			NA								HNSCC(39;0.1)			32	219					0	0	0.002096	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389421	150389421	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:150389421A>C	uc003who.2	+	3	135	c.47A>C	c.(46-48)CAA>CCA	p.Q16P	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	16						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCAAAGGGCCAATGTGCCAGC	0.428			NA											11	68					0	0	0.000978	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417236	150417236	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:150417236G>A	uc003whq.2	+	3	231	c.144G>A	c.(142-144)CTG>CTA	p.L48L	GIMAP1_uc003whp.2_Silent_p.L56L	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	48	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACAGCATCCTGGGCCAGAGAC	0.647			NA											95	194					0	0	0.00361	0	0
PTPRN2	5799	broad.mit.edu	37	7	157341681	157341681	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:157341681C>T	uc003wno.2	-	22	3056	c.2935G>A	c.(2935-2937)GAG>AAG	p.E979K	PTPRN2_uc003wnp.2_Missense_Mutation_p.E962K|PTPRN2_uc003wnq.2_Missense_Mutation_p.E950K|PTPRN2_uc003wnr.2_Missense_Mutation_p.E941K|PTPRN2_uc011kwa.1_Missense_Mutation_p.E1002K|PTPRN2_uc003wnn.2_RNA	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	979	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTCAAGTGCTCCAGGGTCGCT	0.547			NA											17	174					0	0	0.008871	0	0
PTPRN2	5799	broad.mit.edu	37	7	157414103	157414103	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:157414103G>A	uc003wno.2	-	15	2416	c.2295C>T	c.(2293-2295)GCC>GCT	p.A765A	PTPRN2_uc003wnp.2_Silent_p.A748A|PTPRN2_uc003wnq.2_Silent_p.A736A|PTPRN2_uc003wnr.2_Silent_p.A727A|PTPRN2_uc011kwa.1_Silent_p.A788A	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	765	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CCTCCCTCTGGGCCACGAACG	0.637			NA											90	495					0	0	0.00361	0	0
PTPRN2	5799	broad.mit.edu	37	7	157691364	157691364	+	Splice_Site	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:157691364C>A	uc003wno.2	-	12	1909	c.1788_splice	c.e12+1	p.S596_splice	PTPRN2_uc003wnp.2_Splice_Site_p.S579_splice|PTPRN2_uc003wnq.2_Splice_Site_p.S567_splice|PTPRN2_uc003wnr.2_Splice_Site_p.S558_splice|PTPRN2_uc011kwa.1_Splice_Site_p.S619_splice	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N							integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTGTTACTCACCGACCCGACT	0.507			NA											114	262					3.21225e-43	5.37204e-43	0.00361	1	0
PTPRN2	5799	broad.mit.edu	37	7	157985049	157985049	+	Silent	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:157985049G>C	uc003wno.2	-	5	640	c.519C>G	c.(517-519)ACC>ACG	p.T173T	PTPRN2_uc003wnp.2_Silent_p.T156T|PTPRN2_uc003wnq.2_Silent_p.T173T|PTPRN2_uc003wnr.2_Silent_p.T135T|PTPRN2_uc011kwa.1_Silent_p.T196T	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	173	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GCGCCGTATGGGTCCTGGCGA	0.692			NA											28	55					0	0	0.003755	0	0
WDR60	55112	broad.mit.edu	37	7	158716322	158716323	+	Missense_Mutation	DNP	GG	GG	CT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:158716322_158716323GG>CT	uc003woe.3	+	17	2313_2314	c.2155_2156GG>CT	c.(2155-2157)GGC>CTC	p.G719L	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Missense_Mutation_p.G351L	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	719	WD 1.									ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		AACAGCGCACGGCTCAGTTGTC	0.505			NA											74	159					0	0	0.004672	0	0
RP1L1	94137	broad.mit.edu	37	8	10473975	10473976	+	Missense_Mutation	DNP	CA	CA	AG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:10473975_10473976CA>AG	uc003wtc.2	-	3	960_961	c.731_732TG>CT	c.(730-732)CTG>CCT	p.L244P		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	244					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTCTTGAAGTCAGCCCAGATAA	0.525			NA											16	55					0	0	0.004672	0	0
USP17L2	377630	broad.mit.edu	37	8	11995480	11995480	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:11995480A>T	uc003wvc.1	-	1	790	c.790T>A	c.(790-792)TCC>ACC	p.S264T	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	264					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						AACGTCTTGGAGGCCGGCGCC	0.483			NA											11	145					0	0	0.00245	0	0
SORBS3	10174	broad.mit.edu	37	8	22429318	22429318	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:22429318C>T	uc003xbv.2	+	19	2171	c.1831C>T	c.(1831-1833)CAG>TAG	p.Q611*	SORBS3_uc003xbw.3_Nonsense_Mutation_p.Q269*	NM_005775	NP_005766	O60504	VINEX_HUMAN	sorbin and SH3 domain containing 3 isoform 1	611					muscle contraction|positive regulation of stress fiber assembly	cytoskeleton|cytosol|nucleus	protein binding|structural constituent of cytoskeleton|vinculin binding				0		Prostate(55;0.0421)|Breast(100;0.102)		BRCA - Breast invasive adenocarcinoma(99;0.00566)|Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		TAACACCTCTCAGATACACTG	0.607			NA											9	56					0	0	0.008291	0	0
ADAM28	10863	broad.mit.edu	37	8	24193068	24193068	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:24193068G>T	uc003xdy.2	+	14	1564	c.1481G>T	c.(1480-1482)GGC>GTC	p.G494V	ADAM28_uc003xdx.2_Missense_Mutation_p.G494V|ADAM28_uc011kzz.1_Missense_Mutation_p.G261V|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.G181V	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	494	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAAGTCAATGGCTTCCCTTGC	0.527	NSCLC(193;488 2149 22258 34798 40734)		NA											13	29					2.27111e-07	2.75139e-07	0.001368	1	0
PPP2R2A	5520	broad.mit.edu	37	8	26212038	26212038	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:26212038A>G	uc003xeu.2	+	4	537	c.235A>G	c.(235-237)AGC>GGC	p.S79G	PPP2R2A_uc003xek.2_Intron|PPP2R2A_uc011laf.1_Missense_Mutation_p.S89G	NM_002717	NP_002708	P63151	2ABA_HUMAN	alpha isoform of regulatory subunit B55, protein	79					protein dephosphorylation|signal transduction	protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity			ovary(1)|kidney(1)	2		all_cancers(63;0.086)|Ovarian(32;2.61e-05)|all_epithelial(46;0.0514)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.000754)|Epithelial(17;3.02e-15)|all cancers(2;1.52e-13)|OV - Ovarian serous cystadenocarcinoma(2;1.89e-10)|Colorectal(74;0.155)		CACCTTCCAGAGCCATGAACC	0.323			NA											14	105					0	0	0.004007	0	0
INTS9	55756	broad.mit.edu	37	8	28654167	28654167	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:28654167C>T	uc003xha.2	-	9	1049	c.750G>A	c.(748-750)ATG>ATA	p.M250I	INTS9_uc011lav.1_Missense_Mutation_p.M226I|INTS9_uc011law.1_Missense_Mutation_p.M229I|INTS9_uc011lax.1_Missense_Mutation_p.M143I|INTS9_uc010lvc.2_RNA|INTS9_uc003xhb.2_Missense_Mutation_p.M250I	NM_018250	NP_060720	Q9NV88	INT9_HUMAN	integrator complex subunit 9 isoform 1	250					snRNA processing	integrator complex	protein binding			central_nervous_system(1)|pancreas(1)	2		Ovarian(32;0.0439)		KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.152)		AAGCTTGGTCCATGGGCTGAA	0.418			NA											7	44					0	0	0.004482	0	0
FGFR1	2260	broad.mit.edu	37	8	38272335	38272335	+	Missense_Mutation	SNP	C	C	T	rs67268517		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:38272335C>T	uc003xlp.2	-	15	2881	c.1939G>A	c.(1939-1941)GAC>AAC	p.D647N	FGFR1_uc010lwf.2_RNA|FGFR1_uc011lbo.1_Missense_Mutation_p.D645N|FGFR1_uc011lbp.1_Missense_Mutation_p.D558N|FGFR1_uc011lbq.1_Missense_Mutation_p.D556N|FGFR1_uc010lwk.2_Missense_Mutation_p.D637N	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	647	Cytoplasmic (Potential).|Protein kinase.				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	TGGTGAATGTCCCGTGCGAGG	0.502	Melanoma(146;1153 1840 21453 21841 43625)		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						25	190					0	0	0.00632	0	0
ADAM2	2515	broad.mit.edu	37	8	39624743	39624743	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:39624743A>T	uc003xnj.2	-	13	1315	c.1240T>A	c.(1240-1242)TGT>AGT	p.C414S	ADAM2_uc003xnk.2_Missense_Mutation_p.C395S|ADAM2_uc011lck.1_Missense_Mutation_p.C414S|ADAM2_uc003xnl.2_Missense_Mutation_p.C288S	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	414	Extracellular (Potential).|Disintegrin.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		GCAATATCACAGCATGTTTCT	0.373			NA											52	194					0	0	0.00361	0	0
PXDNL	137902	broad.mit.edu	37	8	52384753	52384753	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:52384753T>G	uc003xqu.3	-	8	907	c.806A>C	c.(805-807)CAC>CCC	p.H269P		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	269	Ig-like C2-type 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TTACTTGTTGTGTATCCAAAT	0.413			NA											17	128					0	0	0.008871	0	0
PCMTD1	115294	broad.mit.edu	37	8	52733173	52733173	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:52733173C>A	uc003xqx.3	-	6	1153	c.812G>T	c.(811-813)AGG>ATG	p.R271M	PCMTD1_uc011ldm.1_Missense_Mutation_p.R141M|PCMTD1_uc003xqw.3_Missense_Mutation_p.R271M|PCMTD1_uc011ldn.1_Missense_Mutation_p.R83M|PCMTD1_uc010lya.2_Missense_Mutation_p.R195M	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	271						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				GGGTGGAGCCCTTTGAGGAAT	0.408			NA											7	199					1.08611e-07	1.33076e-07	0.000978	1	0
DNAJC5B	85479	broad.mit.edu	37	8	66989047	66989048	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:66989047_66989048CC>AA	uc003xvs.1	+	4	563_564	c.272_273CC>AA	c.(271-273)GCC>GAA	p.A91E	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	91					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			CTCTACGTGGCCGAGCAGTTTG	0.45			NA											45	152					0	0	0.004672	0	0
CPA6	57094	broad.mit.edu	37	8	68346330	68346330	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:68346330C>A	uc003xxq.3	-	9	1240	c.984G>T	c.(982-984)CAG>CAT	p.Q328H	CPA6_uc003xxr.3_Intron	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	328					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			ACAGTAACATCTGAGCATATG	0.413			NA											17	188					7.07596e-05	7.88904e-05	0.006122	1	0
Unknown	0	broad.mit.edu	37	8	73150379	73150379	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:73150379G>T	uc010lzg.2	-	7	865	c.329C>A	c.(328-330)GCC>GAC	p.A110D						Homo sapiens cDNA, FLJ99767.												NA						GAGAGGGCTGGCTTTCCCGTT	0.418			NA											13	58					4.3838e-07	5.25178e-07	0.001855	1	0
CRISPLD1	83690	broad.mit.edu	37	8	75944444	75944444	+	Silent	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:75944444A>T	uc003yan.2	+	15	1845	c.1470A>T	c.(1468-1470)GGA>GGT	p.G490G	CRISPLD1_uc011lfk.1_Silent_p.G302G|CRISPLD1_uc011lfl.1_Silent_p.G302G	NM_031461	NP_113649	Q9H336	CRLD1_HUMAN	cysteine-rich secretory protein LCCL domain	490	LCCL 2.					extracellular region				ovary(1)|central_nervous_system(1)	2	Breast(64;0.0799)		Epithelial(68;0.155)|BRCA - Breast invasive adenocarcinoma(89;0.161)			ATCCTCCAGGAGGAAAGGCAT	0.308			NA											5	145					0	0	0.001984	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764324	77764324	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:77764324C>A	uc003yav.2	+	10	5419	c.5032C>A	c.(5032-5034)CCT>ACT	p.P1678T	ZFHX4_uc003yau.1_Missense_Mutation_p.P1723T|ZFHX4_uc003yaw.1_Missense_Mutation_p.P1678T	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1678	Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCTCATTTTCCTATGACCCC	0.473			NA								HNSCC(33;0.089)			27	137					2.79863e-10	3.64465e-10	0.004656	1	0
TPD52	7163	broad.mit.edu	37	8	80976781	80976781	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:80976781C>A	uc003ybr.1	-	2	509	c.187G>T	c.(187-189)GCC>TCC	p.A63S	TPD52_uc010lzr.2_RNA|TPD52_uc010lzs.1_RNA|TPD52_uc003ybs.1_Missense_Mutation_p.A23S|TPD52_uc003ybt.1_Missense_Mutation_p.A23S|TPD52_uc003ybq.1_RNA|TPD52_uc003ybu.1_RNA	NM_001025252	NP_001020423	P55327	TPD52_HUMAN	tumor protein D52 isoform 1	63	Potential.				anatomical structure morphogenesis|B cell differentiation|secretion	endoplasmic reticulum|perinuclear region of cytoplasm	calcium ion binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1	all_epithelial(4;1.13e-09)|Lung NSC(7;9.71e-07)|all_lung(9;3.75e-06)	Lung NSC(129;3.55e-06)|all_lung(136;1.53e-05)|Acute lymphoblastic leukemia(644;0.158)	BRCA - Breast invasive adenocarcinoma(6;0.00181)|Epithelial(68;0.0149)|all cancers(69;0.0612)			CTGATCGTGGCAGCAACATCT	0.438			NA											36	499					2.26627e-22	3.55281e-22	0.007835	1	0
E2F5	1875	broad.mit.edu	37	8	86124414	86124414	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:86124414C>T	uc003ycz.3	+	7	943	c.906C>T	c.(904-906)ATC>ATT	p.I302I	E2F5_uc003yda.3_Silent_p.I301I|E2F5_uc010mab.2_Silent_p.I141I|E2F5_uc003ydb.3_Silent_p.I121I|uc003ydc.1_5'Flank	NM_001951	NP_001942	Q15329	E2F5_HUMAN	E2F transcription factor 5 isoform 1	302	Transactivation (Potential).				G1 phase of mitotic cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1						GTGGAGATATCATTGATGAGT	0.299			NA											6	54					0	0	0.001168	0	0
CA13	377677	broad.mit.edu	37	8	86171659	86171659	+	Missense_Mutation	SNP	G	G	T	rs151178960	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:86171659G>T	uc003ydg.2	+	3	587	c.245G>T	c.(244-246)GGT>GTT	p.G82V	CA13_uc003ydf.1_RNA	NM_198584	NP_940986	Q8N1Q1	CAH13_HUMAN	carbonic anhydrase XIII	82					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0						GTTCTGCGTGGTGGTCCTCTC	0.453			NA											14	207					1.40151e-16	2.05924e-16	0.010504	1	0
SLC7A13	157724	broad.mit.edu	37	8	87229801	87229801	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:87229801C>A	uc003ydq.1	-	3	1175	c.1077G>T	c.(1075-1077)TTG>TTT	p.L359F	SLC7A13_uc003ydr.1_Missense_Mutation_p.L350F	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	359	Helical; Name=10; (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						TATAGTTTATCAAATCAATTA	0.323			NA											13	49					3.35478e-16	4.8694e-16	0.003163	1	0
CNBD1	168975	broad.mit.edu	37	8	88365868	88365868	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:88365868G>T	uc003ydy.2	+	10	1205	c.1157G>T	c.(1156-1158)AGA>ATA	p.R386I		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	386	cNMP.									ovary(3)	3						TAACAGAAAAGATCTCAAAAA	0.323			NA											9	69					0.000673444	0.000723852	0.008291	1	0
MMP16	4325	broad.mit.edu	37	8	89180030	89180030	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:89180030G>T	uc003yeb.3	-	4	859	c.577C>A	c.(577-579)CAT>AAT	p.H193N	MMP16_uc003yec.2_Missense_Mutation_p.H193N	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	193	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						CTGTCCCCATGGAAACCAGAT	0.438			NA											6	65					2.7689e-08	3.46353e-08	0.001984	1	0
TMEM67	91147	broad.mit.edu	37	8	94811942	94811942	+	Missense_Mutation	SNP	T	T	C	rs138508720		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:94811942T>C	uc011lgk.1	+	21	2268	c.2197T>C	c.(2197-2199)TAT>CAT	p.Y733H	TMEM67_uc010maw.2_Missense_Mutation_p.Y439H|TMEM67_uc003yga.3_Missense_Mutation_p.Y652H|TMEM67_uc011lgl.1_Missense_Mutation_p.Y132H	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	733					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			CATTTTGAGATATGCAGTGTC	0.378			NA											12	133					0	0	0.001855	0	0
CDH17	1015	broad.mit.edu	37	8	95164334	95164334	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:95164334C>G	uc003ygh.2	-	13	1683	c.1558G>C	c.(1558-1560)GAT>CAT	p.D520H	CDH17_uc011lgo.1_Missense_Mutation_p.D306H|CDH17_uc011lgp.1_Missense_Mutation_p.D520H	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	520	Extracellular (Potential).|Cadherin 5.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			GTTTCAAAATCAAGAGGCTGT	0.363			NA											14	148					0	0	0.006122	0	0
CDH17	1015	broad.mit.edu	37	8	95189928	95189928	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:95189928C>G	uc003ygh.2	-	4	297	c.172G>C	c.(172-174)GTG>CTG	p.V58L	CDH17_uc011lgo.1_Missense_Mutation_p.V58L|CDH17_uc011lgp.1_Missense_Mutation_p.V58L	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	58	Extracellular (Potential).|Cadherin 1.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TCAAAAGTCACAGCAGGAGGA	0.398			NA											35	98					0	0	0.003271	0	0
UQCRB	7381	broad.mit.edu	37	8	97247751	97247751	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:97247751C>A	uc003yhq.3	-	1	112	c.8G>T	c.(7-9)GGT>GTT	p.G3V	UQCRB_uc011lgt.1_RNA|UQCRB_uc010mbc.2_RNA	NM_006294	NP_006285	P14927	QCR7_HUMAN	ubiquinol-cytochrome c reductase binding	3					aerobic respiration|mitochondrial electron transport, ubiquinol to cytochrome c	mitochondrial respiratory chain	ubiquinol-cytochrome-c reductase activity			ovary(1)	1	Breast(36;5.16e-05)					GGCCTGCTTACCAGCCATTTT	0.532			NA											6	84					2.7689e-08	3.46353e-08	0.001984	1	0
SPAG1	6674	broad.mit.edu	37	8	101178126	101178126	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:101178126G>A	uc003yjh.1	+	3	311	c.225G>A	c.(223-225)TTG>TTA	p.L75L	SPAG1_uc003yjg.1_Silent_p.L75L|SPAG1_uc003yji.1_Silent_p.L75L	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	75					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		GCAGAGCTTTGAGGAAAGATA	0.363			NA											15	102					0	0	0.003163	0	0
BAALC	79870	broad.mit.edu	37	8	104225192	104225192	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:104225192C>A	uc003yld.2	+	2	411	c.206C>A	c.(205-207)ACA>AAA	p.T69K	BAALC_uc003yle.2_Intron|uc003ylf.2_Intron|BAALC_uc003ylg.2_Missense_Mutation_p.T15K|BAALC_uc010mcc.2_5'Flank	NM_024812	NP_079088	Q8WXS3	BAALC_HUMAN	brain and acute leukemia, cytoplasmic isoform 1	104						centrosome|membrane|nucleus					0			OV - Ovarian serous cystadenocarcinoma(57;3.49e-05)|STAD - Stomach adenocarcinoma(118;0.133)			CCCCGATCTACAGCCCCAGGT	0.572			NA											48	221					2.51966e-14	3.58477e-14	0.00361	1	0
ZFPM2	23414	broad.mit.edu	37	8	106801053	106801053	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:106801053C>T	uc003ymd.2	+	6	663	c.640C>T	c.(640-642)CTC>TTC	p.L214F	ZFPM2_uc011lhs.1_5'UTR	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	214					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TCAGATGACTCTCACAGAAGG	0.498			NA											10	86					0	0	0.006214	0	0
RSPO2	340419	broad.mit.edu	37	8	108972928	108972928	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:108972928G>T	uc003yms.2	-	4	1059	c.401C>A	c.(400-402)CCA>CAA	p.P134Q	RSPO2_uc003ymq.2_Missense_Mutation_p.P67Q|RSPO2_uc003ymr.2_Missense_Mutation_p.P71Q	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	134	FU.				Wnt receptor signaling pathway	extracellular region	heparin binding	p.P134P(1)		skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			TTCTTCTAATGGTGCAAAACC	0.363			NA											29	54					1.84765e-07	2.2485e-07	0.003755	1	0
PKHD1L1	93035	broad.mit.edu	37	8	110432808	110432808	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:110432808G>C	uc003yne.2	+	23	2690	c.2586G>C	c.(2584-2586)CAG>CAC	p.Q862H		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	862	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGCACTTTCAGGTGAATCAGA	0.313			NA								HNSCC(38;0.096)			10	83					0	0	0.006214	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110476838	110476838	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:110476838G>C	uc003yne.2	+	49	7881	c.7777G>C	c.(7777-7779)GAT>CAT	p.D2593H		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2593	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAACCACCCTGATGGGCCATC	0.453			NA								HNSCC(38;0.096)			11	116					0	0	0.000978	0	0
KCNV1	27012	broad.mit.edu	37	8	110984554	110984554	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:110984554C>A	uc003ynr.3	-	2	1266	c.924G>T	c.(922-924)GGG>GGT	p.G308G	KCNV1_uc010mcw.2_Silent_p.G308G	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	308	Extracellular (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			GGACAATGCGCCCCACGTTCT	0.522			NA											52	44					5.39261e-20	8.18006e-20	0.00361	1	0
CSMD3	114788	broad.mit.edu	37	8	113332155	113332155	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:113332155C>T	uc003ynu.2	-	46	7380	c.7221G>A	c.(7219-7221)TTG>TTA	p.L2407L	CSMD3_uc003yns.2_Silent_p.L1609L|CSMD3_uc003ynt.2_Silent_p.L2367L|CSMD3_uc011lhx.1_Silent_p.L2303L|CSMD3_uc003ynw.1_Silent_p.L118L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2407	Extracellular (Potential).|Sushi 13.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CATCTTCCGTCAAAATTTCAG	0.358			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			4	161					0	0	0.000602	0	0
CSMD3	114788	broad.mit.edu	37	8	113420618	113420618	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:113420618C>A	uc003ynu.2	-	34	5693	c.5534G>T	c.(5533-5535)GGT>GTT	p.G1845V	CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Missense_Mutation_p.G1805V|CSMD3_uc011lhx.1_Missense_Mutation_p.G1741V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1845	Extracellular (Potential).|CUB 10.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GATCTGATTACCTGAACTCAG	0.328			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			13	80					9.31168e-06	1.06462e-05	0.001855	1	0
ENPP2	5168	broad.mit.edu	37	8	120631544	120631544	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:120631544C>T	uc003yot.1	-	5	505	c.419G>A	c.(418-420)GGA>GAA	p.G140E	ENPP2_uc003yos.1_Missense_Mutation_p.G140E|ENPP2_uc010mdd.1_Missense_Mutation_p.G140E	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	140	SMB 2.				cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			ATGCGACTCTCCTATAAGGAA	0.373	Melanoma(20;305 879 2501 4818 31020)		NA											8	87					0	0	0.004482	0	0
COL14A1	7373	broad.mit.edu	37	8	121209165	121209165	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:121209165G>T	uc003yox.2	+	6	837	c.572G>T	c.(571-573)GGC>GTC	p.G191V	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	191	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TTCGATGTGGGCTCAGAGAAG	0.388			NA											81	214					6.71967e-41	1.12203e-40	0.00361	1	0
COL14A1	7373	broad.mit.edu	37	8	121216051	121216051	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:121216051G>T	uc003yox.2	+	9	1246	c.981G>T	c.(979-981)GTG>GTT	p.V327V	COL14A1_uc003yoy.2_Silent_p.V5V|COL14A1_uc010mde.1_Silent_p.V5V	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	327	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACACAGTTGTGGAGAGTCTGA	0.463			NA											30	48					2.46105e-21	3.81375e-21	0.002096	1	0
WDR67	93594	broad.mit.edu	37	8	124132400	124132400	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:124132400C>T	uc003ypp.1	+	11	1632	c.1542C>T	c.(1540-1542)ATC>ATT	p.I514I	WDR67_uc011lig.1_Silent_p.I514I|WDR67_uc011lih.1_Silent_p.I404I|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Silent_p.I227I	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	514	Rab-GAP TBC.					centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			ACCAACTCATCTGTTTTGAAG	0.333			NA											6	6					0	0	0.001984	0	0
TRMT12	55039	broad.mit.edu	37	8	125463762	125463762	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:125463762G>T	uc003yra.3	+	1	715	c.594G>T	c.(592-594)TGG>TGT	p.W198C		NM_017956	NP_060426	Q53H54	TYW2_HUMAN	homolog of yeast tRNA methyltransferase 12	198					tRNA processing		methyltransferase activity			upper_aerodigestive_tract(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			ACCATGGCTGGGTAGAGCATG	0.522			NA											28	101					1.30897e-18	1.958e-18	0.009535	1	0
ASAP1	50807	broad.mit.edu	37	8	131140239	131140239	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:131140239T>C	uc003yta.1	-	15	1343	c.1315A>G	c.(1315-1317)AAA>GAA	p.K439E	ASAP1_uc003ysz.1_Missense_Mutation_p.K250E|ASAP1_uc011liw.1_Missense_Mutation_p.K432E	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	439	Arf-GAP.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						ATAATGGCTTTTGTCAGGTCT	0.483			NA											8	100					0	0	0.008291	0	0
ADCY8	114	broad.mit.edu	37	8	131792968	131792968	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:131792968C>A	uc003ytd.3	-	18	3680	c.3424G>T	c.(3424-3426)GAC>TAC	p.D1142Y	ADCY8_uc010mds.2_Missense_Mutation_p.D1011Y	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1142	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AAGCCCTGGTCCTTCAGGATG	0.502			NA								HNSCC(32;0.087)			16	245					3.45872e-05	3.90465e-05	0.004007	1	0
EFR3A	23167	broad.mit.edu	37	8	132958799	132958799	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:132958799A>G	uc003yte.2	+	4	486	c.285A>G	c.(283-285)CCA>CCG	p.P95P		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	95						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			GCATTAAGCCATTTGTAGAAA	0.408			NA											3	12					0	0	0.004672	0	0
PHF20L1	51105	broad.mit.edu	37	8	133823337	133823337	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:133823337G>T	uc003ytt.2	+	9	1219	c.894G>T	c.(892-894)AAG>AAT	p.K298N	PHF20L1_uc003ytr.2_Missense_Mutation_p.K272N|PHF20L1_uc010mdv.2_Missense_Mutation_p.K272N|PHF20L1_uc003yts.2_Missense_Mutation_p.K298N|PHF20L1_uc011lja.1_Missense_Mutation_p.K272N|PHF20L1_uc003ytu.1_RNA|PHF20L1_uc003ytv.2_Missense_Mutation_p.K137N	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	298							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			CTGAAAAAAAGGAAGACTACA	0.388			NA											12	168					4.3838e-07	5.25178e-07	0.001855	1	0
FAM135B	51059	broad.mit.edu	37	8	139151289	139151289	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:139151289T>A	uc003yuy.2	-	18	4012	c.3841A>T	c.(3841-3843)ACC>TCC	p.T1281S	FAM135B_uc003yux.2_Missense_Mutation_p.T1182S|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1281										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TCCCTGAAGGTCAGCTGCAGT	0.368			NA								HNSCC(54;0.14)			14	174					0	0	0.007413	0	0
LY6K	54742	broad.mit.edu	37	8	143782017	143782017	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:143782017A>T	uc011ljv.1	+	1	489	c.72A>T	c.(70-72)AGA>AGT	p.R24S	LY6K_uc011ljw.1_Missense_Mutation_p.R24S|LY6K_uc011ljx.1_Missense_Mutation_p.R24S	NM_017527	NP_059997	Q17RY6	LY6K_HUMAN	lymphocyte antigen 6 complex, locus K isoform 1	24						anchored to membrane|cytoplasm|extracellular region|nucleolus|plasma membrane				central_nervous_system(1)	1	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TGACTGCGAGACAACGAGATC	0.706			NA											7	10					0	0	0.00308	0	0
CYP11B2	1585	broad.mit.edu	37	8	143994820	143994820	+	Silent	SNP	G	G	T	rs140463031		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:143994820G>T	uc003yxk.1	-	6	1005	c.1002C>A	c.(1000-1002)CCC>CCA	p.P334P		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	334					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GCTGCACGTCGGGGTTCCGAG	0.637			NA							Familial_Hyperaldosteronism_type_I				54	44					2.27459e-33	3.74577e-33	0.00361	1	0
CYP11B2	1585	broad.mit.edu	37	8	143995724	143995725	+	Missense_Mutation	DNP	TG	TG	AT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:143995724_143995725TG>AT	uc003yxk.1	-	5	912_913	c.909_910CA>AT	c.(907-912)GCCATC>GCATTC	p.I304F		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	304					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	TTGGCCTTGATGGCTTCTAGTG	0.584			NA							Familial_Hyperaldosteronism_type_I				29	56					0	0	0.004672	0	0
EPPK1	83481	broad.mit.edu	37	8	144940309	144940309	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:144940309C>G	uc003zaa.1	-	2	15136	c.15123G>C	c.(15121-15123)GAG>GAC	p.E5041D		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5041	Plectin 64.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGCGGTTCATCTCCTCGTCGA	0.677			NA											8	623					0	0	0.006214	0	0
PARP10	84875	broad.mit.edu	37	8	145057392	145057392	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:145057392G>A	uc003zal.3	-	8	2473	c.2365C>T	c.(2365-2367)CTG>TTG	p.L789L	PARP10_uc003zak.3_Silent_p.L486L|PARP10_uc011lku.1_Silent_p.L801L|PARP10_uc011lkv.1_Intron|PARP10_uc003zam.2_Silent_p.L780L	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	789	Myc binding.					Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGGCCAGCCAGAAGTGCCACC	0.657			NA											4	54					0	0	0.000602	0	0
SPATC1	375686	broad.mit.edu	37	8	145095317	145095317	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:145095317C>A	uc011lkw.1	+	2	821	c.719C>A	c.(718-720)ACT>AAT	p.T240N	SPATC1_uc011lkx.1_Missense_Mutation_p.T240N	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	240										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGAGGCCCCACTGGGCCCCAG	0.687			NA											32	13					1.66425e-11	2.23491e-11	0.004878	1	0
FREM1	158326	broad.mit.edu	37	9	14797585	14797585	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:14797585T>A	uc003zlm.2	-	21	4340	c.3750A>T	c.(3748-3750)ACA>ACT	p.T1250T	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1250	CSPG 8.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ACAATTGGATTGTAAAATCAT	0.368			NA											60	48					0	0	0.00361	0	0
BNC2	54796	broad.mit.edu	37	9	16419108	16419108	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:16419108C>T	uc003zml.2	-	7	3319	c.3179G>A	c.(3178-3180)AGA>AAA	p.R1060K	BNC2_uc011lmw.1_Missense_Mutation_p.R965K|BNC2_uc003zmm.2_3'UTR|BNC2_uc011lmv.1_3'UTR|BNC2_uc003zmj.2_3'UTR|BNC2_uc003zmk.2_RNA|BNC2_uc003zmi.2_Missense_Mutation_p.R847K	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	1060					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		GTGCATTTCTCTCAAATGCAC	0.453			NA											8	82					0	0	0.004482	0	0
IFNB1	3456	broad.mit.edu	37	9	21077760	21077760	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:21077760G>T	uc003zok.2	-	1	184	c.109C>A	c.(109-111)CAG>AAG	p.Q37K		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	37					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	TTCTGACACTGAAAATTGCTG	0.468			NA											43	32					2.64894e-19	3.99008e-19	0.00361	1	0
NOL6	65083	broad.mit.edu	37	9	33468330	33468330	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:33468330T>A	uc003zsz.2	-	10	1398	c.1297A>T	c.(1297-1299)ACT>TCT	p.T433S	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zta.2_Missense_Mutation_p.T433S|NOL6_uc010mjv.2_Missense_Mutation_p.T430S|NOL6_uc011lob.1_Missense_Mutation_p.T373S|NOL6_uc003ztb.1_Missense_Mutation_p.T433S	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	433					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		TGGTGGTAAGTAGAGGCAGTG	0.567			NA											7	51					0	0	0.001984	0	0
UBAP2	55833	broad.mit.edu	37	9	33927878	33927878	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:33927878T>C	uc003ztq.1	-	20	2401	c.2288A>G	c.(2287-2289)AAC>AGC	p.N763S	UBAP2_uc011loc.1_Missense_Mutation_p.N672S|UBAP2_uc011lod.1_Missense_Mutation_p.N496S|UBAP2_uc011loe.1_Missense_Mutation_p.N518S|UBAP2_uc011lof.1_Missense_Mutation_p.N688S|UBAP2_uc011log.1_3'UTR|UBAP2_uc003ztn.1_Missense_Mutation_p.N2S|UBAP2_uc003zto.1_Missense_Mutation_p.N2S|UBAP2_uc003ztp.1_Missense_Mutation_p.N2S	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	763										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		GTTCGCGGTGTTCATGCTACT	0.642			NA											14	121					0	0	0.007413	0	0
FAM75A6	389730	broad.mit.edu	37	9	43625488	43625488	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:43625488C>A	uc011lrb.1	-	4	3228	c.3199G>T	c.(3199-3201)GAG>TAG	p.E1067*		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	1067						integral to membrane					0						TCATGTAGCTCCTGGGAAGCC	0.547			NA											94	84					5.38336e-66	9.10185e-66	0.00361	1	0
ANKRD20A3	441425	broad.mit.edu	37	9	67968379	67968379	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:67968379G>A	uc004aeu.2	+	15	2050	c.1938G>A	c.(1936-1938)ATG>ATA	p.M646I	ANKRD20A3_uc010mnn.2_Missense_Mutation_p.M645I	NM_001012419	NP_001012419	Q5VUR7	A20A3_HUMAN	ankyrin repeat domain 20 family, member A3	646	Potential.										0						AAGTAGAAATGAGTTCTGCTA	0.343			NA											4	90					0	0	0.001168	0	0
CBWD6	644019	broad.mit.edu	37	9	69205514	69205514	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:69205514C>T	uc004afj.3	-	14	1130	c.1024G>A	c.(1024-1026)GAG>AAG	p.E342K	CBWD6_uc004afk.3_RNA|CBWD6_uc011lrf.1_RNA	NM_001085457	NP_001078926	Q4V339	CBWD6_HUMAN	COBW domain containing 6	342	CobW C-terminal.						ATP binding				0						ACTGGAGTCTCCTCCAGATCA	0.423			NA											30	97					0	0	0.009535	0	0
ANKRD20A4	728747	broad.mit.edu	37	9	69423642	69423642	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:69423642G>A	uc004afn.2	+	15	2050	c.1938G>A	c.(1936-1938)ATG>ATA	p.M646I	uc010mnx.1_5'Flank	NM_001098805	NP_001092275	Q4UJ75	A20A4_HUMAN	ankyrin repeat domain 20 family, member A4	646	Potential.										0						AAGTAGAAATGAGTTCTGCTA	0.333			NA											4	75					0	0	0.009096	0	0
SMC5	23137	broad.mit.edu	37	9	72965329	72965329	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:72965329T>G	uc004ahr.2	+	24	3224	c.3107T>G	c.(3106-3108)ATG>AGG	p.M1036R	SMC5_uc011lry.1_Missense_Mutation_p.M181R	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	1036					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						GTGTTTGAAATGGTTGTAAAT	0.328			NA											9	85					0	0	0.004482	0	0
RORB	6096	broad.mit.edu	37	9	77257434	77257434	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:77257434G>T	uc004aji.2	+	4	422	c.373G>T	c.(373-375)GAG>TAG	p.E125*	RORB_uc004ajh.2_Nonsense_Mutation_p.E114*	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	125	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						gcagAGTGGGGAGGCAGAAGC	0.443			NA											22	19					2.65835e-16	3.87421e-16	0.007291	1	0
TRPM6	140803	broad.mit.edu	37	9	77376931	77376931	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:77376931C>T	uc004ajl.1	-	26	4894	c.4656G>A	c.(4654-4656)AAG>AAA	p.K1552K	TRPM6_uc004ajk.1_Silent_p.K1547K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Silent_p.K508K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1552	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TCTTACAGATCTTCATCAATT	0.328			NA											14	51					0	0	0.00245	0	0
GCNT1	2650	broad.mit.edu	37	9	79118035	79118035	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:79118035G>A	uc010mpf.2	+	3	1079	c.738G>A	c.(736-738)AGG>AGA	p.R246R	GCNT1_uc010mpg.2_Silent_p.R246R|GCNT1_uc010mph.2_Silent_p.R246R|GCNT1_uc004akf.3_Silent_p.R246R|GCNT1_uc010mpi.2_Silent_p.R246R|GCNT1_uc004akh.3_Silent_p.R246R	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	246	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						AAACGGAGAGGATGCCATCCC	0.418			NA											13	81					0	0	0.00245	0	0
PRUNE2	158471	broad.mit.edu	37	9	79465437	79465437	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:79465437G>C	uc010mpk.2	-	3	410	c.286C>G	c.(286-288)CAG>GAG	p.Q96E	PRUNE2_uc004akn.2_Missense_Mutation_p.Q96E	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	96					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCATTTAGCTGATGCAGGTTA	0.408			NA											106	78					0	0	0.00361	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607685	84607685	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:84607685A>G	uc004amn.2	+	4	2347	c.2300A>G	c.(2299-2301)GAG>GGG	p.E767G		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	767						integral to membrane					0						CTTTCCATGGAGAATGTGGGG	0.478			NA											40	38					0	0	0.00361	0	0
SLC28A3	64078	broad.mit.edu	37	9	86912205	86912205	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:86912205C>T	uc010mpz.2	-	8	917	c.792G>A	c.(790-792)CTG>CTA	p.L264L	SLC28A3_uc011lsy.1_Silent_p.L195L|SLC28A3_uc004anu.1_Silent_p.L264L|SLC28A3_uc010mqb.2_Silent_p.L195L	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	264	Extracellular (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						CTGTGTACTCCAGAAAAGTCT	0.403	Ovarian(106;425 1539 34835 42413 43572)		NA											8	59					0	0	0.004482	0	0
C9orf170	401535	broad.mit.edu	37	9	89771610	89771610	+	Silent	SNP	T	T	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:89771610T>C	uc004apa.1	+	2	378	c.291T>C	c.(289-291)ACT>ACC	p.T97T		NM_001001709	NP_001001709	A2RU37	CI170_HUMAN	hypothetical protein LOC401535	97											0						TAGATGTCACTCGGGAAGACC	0.229			NA											11	62					0	0	0.003163	0	0
SUSD3	203328	broad.mit.edu	37	9	95841860	95841860	+	Missense_Mutation	SNP	C	C	T	rs149501399	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:95841860C>T	uc004atb.2	+	4	569	c.533C>T	c.(532-534)GCG>GTG	p.A178V	SUSD3_uc004atc.2_Missense_Mutation_p.A165V	NM_145006	NP_659443	Q96L08	SUSD3_HUMAN	sushi domain containing 3	178	Cytoplasmic (Potential).					integral to membrane				breast(2)|skin(2)|ovary(1)|lung(1)	6						CCCAGCCAGGCGCACGACAAC	0.647			NA											13	34					0	0	0.00245	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432860	104432860	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:104432860G>T	uc004bbp.1	-	3	2435	c.1834C>A	c.(1834-1836)CAC>AAC	p.H612N	GRIN3A_uc004bbq.1_Missense_Mutation_p.H612N	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	612	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CCAGTCCAGTGCCCATTTTTC	0.468			NA											49	46					9.58827e-17	1.41073e-16	0.00361	1	0
CYLC2	1539	broad.mit.edu	37	9	105765459	105765459	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:105765459C>T	uc004bbs.2	+	3	164	c.94C>T	c.(94-96)CAC>TAC	p.H32Y		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	32	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				GAATCAGCAACACTTTGCCCT	0.393			NA											24	109					0	0	0.00632	0	0
C9orf6	54942	broad.mit.edu	37	9	111701527	111701527	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:111701527G>C	uc004bdn.2	+	4	407	c.313G>C	c.(313-315)GAT>CAT	p.D105H	C9orf6_uc010mtr.2_RNA	NM_017832	NP_060302	Q9NX38	CI006_HUMAN	hypothetical protein LOC54942	105					glycine catabolic process	glycine cleavage complex				pancreas(1)	1		Myeloproliferative disorder(63;0.0511)		OV - Ovarian serous cystadenocarcinoma(323;9.58e-07)		TTACTGCTCAGATGGTGAAGA	0.378			NA											22	54					0	0	0.00632	0	0
TLR4	7099	broad.mit.edu	37	9	120476798	120476798	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:120476798G>T	uc004bjz.2	+	3	2683	c.2392G>T	c.(2392-2394)GAG>TAG	p.E798*	TLR4_uc004bka.2_Nonsense_Mutation_p.E758*|TLR4_uc004bkb.2_Nonsense_Mutation_p.E598*	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	798	Cytoplasmic (Potential).|TIR.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CCTGGAGTGGGAGGACAGTGT	0.542			NA											23	149					1.74807e-11	2.34163e-11	0.002096	1	0
PTGS1	5742	broad.mit.edu	37	9	125141116	125141116	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:125141116G>T	uc004bmg.1	+	5	550	c.415G>T	c.(415-417)GAG>TAG	p.E139*	PTGS1_uc011lys.1_Nonsense_Mutation_p.E114*|PTGS1_uc010mwb.1_Nonsense_Mutation_p.E30*|PTGS1_uc004bmf.1_Nonsense_Mutation_p.E139*|PTGS1_uc004bmh.1_Nonsense_Mutation_p.E30*|PTGS1_uc011lyt.1_Nonsense_Mutation_p.E30*	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	139					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CATCAGCTGGGAGTCTTTCTC	0.517			NA											46	46					7.05377e-20	1.06848e-19	0.00361	1	0
GOLGA2	2801	broad.mit.edu	37	9	131020133	131020133	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:131020133C>G	uc011maw.1	-	23	2479	c.2466G>C	c.(2464-2466)CTG>CTC	p.L822L	GOLGA2_uc010mxw.2_Silent_p.L145L|GOLGA2_uc004buh.2_Silent_p.L295L	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	822	Potential.					Golgi cisterna membrane	protein binding			ovary(1)	1						CCCTCTCCTTCAGGTCTGCCT	0.572			NA											57	572					0	0	0.00361	0	0
PKN3	29941	broad.mit.edu	37	9	131479051	131479051	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:131479051G>C	uc004bvw.2	+	16	2227	c.1834G>C	c.(1834-1836)GAG>CAG	p.E612Q	PKN3_uc010myh.2_Missense_Mutation_p.E612Q|PKN3_uc011mbk.1_Missense_Mutation_p.E162Q	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	612	Protein kinase.				signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						GCGGATCCTGGAGGCTGTGGG	0.587			NA											22	174					0	0	0.00333	0	0
LAMC3	10319	broad.mit.edu	37	9	133967067	133967067	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:133967067C>A	uc004caa.1	+	28	4719	c.4621C>A	c.(4621-4623)CTG>ATG	p.L1541M	LAMC3_uc010mze.1_Missense_Mutation_p.L229M	NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	1541	Domain II and I.|Potential.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		GCAGCAGGAGCTGCAGATCCA	0.627			NA											11	8					9.31168e-06	1.06462e-05	0.001855	1	0
CEL	1056	broad.mit.edu	37	9	135940545	135940545	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:135940545C>T	uc010naa.1	+	4	484	c.468C>T	c.(466-468)CGC>CGT	p.R156R		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	153					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		TCGCCACACGCGGAAACGTCA	0.607			NA											71	326					0	0	0.00361	0	0
SURF6	6838	broad.mit.edu	37	9	136198874	136198874	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:136198874C>T	uc004cdb.3	-	5	995	c.917G>A	c.(916-918)CGG>CAG	p.R306Q		NM_006753	NP_006744	O75683	SURF6_HUMAN	surfeit 6	306						granular component	DNA binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.16e-06)|Epithelial(140;8.34e-06)|all cancers(34;7.08e-05)		CTTCTCCCACCGGCGCTGCCG	0.711			NA											9	24					0	0	0.001368	0	0
FCN1	2219	broad.mit.edu	37	9	137801797	137801797	+	Silent	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:137801797T>A	uc004cfi.2	-	9	920	c.828A>T	c.(826-828)GGA>GGT	p.G276G		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	276	Fibrinogen C-terminal.				opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		ACCACCAGGCTCCTTGGAACT	0.498			NA											23	211					0	0	0.00278	0	0
ANAPC2	29882	broad.mit.edu	37	9	140075363	140075364	+	Missense_Mutation	DNP	CG	CG	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr9:140075363_140075364CG>AA	uc004clr.1	-	8	1559_1560	c.1486_1487CG>TT	c.(1486-1488)CGG>TTG	p.R496L	ANAPC2_uc004clq.1_Missense_Mutation_p.R352L	NM_013366	NP_037498	Q9UJX6	ANC2_HUMAN	anaphase-promoting complex subunit 2	496					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of cyclin-dependent protein kinase activity	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin protein ligase binding|ubiquitin-protein ligase activity			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		CGATGAACGCCGCTTGGAGCTC	0.649			NA											69	42					0	0	0.004672	0	0
MXRA5	25878	broad.mit.edu	37	X	3242297	3242297	+	Missense_Mutation	SNP	C	C	G	rs149921437		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:3242297C>G	uc004crg.3	-	5	1586	c.1429G>C	c.(1429-1431)GTA>CTA	p.V477L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	477						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCAATCATTACCCAGCTTCTG	0.507			NA											3	173					0	0	0.004672	0	0
MXRA5	25878	broad.mit.edu	37	X	3248372	3248372	+	Silent	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:3248372C>A	uc004crg.3	-	4	553	c.396G>T	c.(394-396)CTG>CTT	p.L132L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	132	LRR 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGTCAATGTGCAGCCTCATTA	0.478			NA											7	27					7.48243e-07	8.88487e-07	0.006214	1	0
NLGN4X	57502	broad.mit.edu	37	X	5821357	5821357	+	Silent	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:5821357C>G	uc010ndh.2	-	5	1863	c.1362G>C	c.(1360-1362)GTG>GTC	p.V454V	NLGN4X_uc004crp.2_Silent_p.V474V|NLGN4X_uc004crq.2_Silent_p.V454V|NLGN4X_uc010ndi.2_Silent_p.V491V|NLGN4X_uc004crr.2_Silent_p.V454V|NLGN4X_uc010ndj.2_Silent_p.V454V	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	454	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CGGCGGTGGCCACGGCGGGGG	0.602			NA											9	17					0	0	0.003163	0	0
TLR7	51284	broad.mit.edu	37	X	12904107	12904107	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:12904107C>T	uc004cvc.2	+	3	619	c.480C>T	c.(478-480)ATC>ATT	p.I160I		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	160	LRR 5.|Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	CCAACAACATCTTTTCCATCA	0.418			NA											27	71					0	0	0.004656	0	0
FAM9C	171484	broad.mit.edu	37	X	13061929	13061929	+	Translation_Start_Site	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:13061929C>T	uc004cvh.1	-	2	190	c.-20G>A	c.(-22--18)CCGTG>CCATG		FAM9C_uc004cvg.2_Translation_Start_Site	NM_174901	NP_777561	Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C							nucleus					0						TTCCTGCCCACGGGCTCCGTG	0.572			NA											12	26					0	0	0.001855	0	0
GRPR	2925	broad.mit.edu	37	X	16170416	16170416	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:16170416T>A	uc004cxj.2	+	3	1456	c.803T>A	c.(802-804)GTG>GAG	p.V268E		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	268	Helical; Name=6; (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					ACAGTGCTGGTGTTTGTGGGC	0.522			NA											44	97					0	0	0.002852	0	0
BEND2	139105	broad.mit.edu	37	X	18192350	18192350	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:18192350G>A	uc004cyj.3	-	12	1935	c.1781C>T	c.(1780-1782)ACC>ATC	p.T594I	BEND2_uc010nfb.2_Missense_Mutation_p.T503I	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	594										ovary(3)|kidney(1)|central_nervous_system(1)	5						AACACGGTTGGTACGTTTTTT	0.413			NA											12	104					0	0	0.001368	0	0
PDK3	5165	broad.mit.edu	37	X	24512948	24512948	+	Missense_Mutation	SNP	C	C	T	rs112864206		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:24512948C>T	uc004dbg.2	+	2	425	c.196C>T	c.(196-198)CTT>TTT	p.L66F	PDK3_uc004dbh.2_Missense_Mutation_p.L66F	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	66					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						AGAAGTTAATCTTCTGCCGGA	0.403			NA											3	50					0	0	0.000602	0	0
DMD	1756	broad.mit.edu	37	X	32662374	32662374	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:32662374C>A	uc004dda.1	-	11	1450	c.1206G>T	c.(1204-1206)TTG>TTT	p.L402F	DMD_uc004dcz.2_Missense_Mutation_p.L279F|DMD_uc004dcy.1_Missense_Mutation_p.L398F|DMD_uc004ddb.1_Missense_Mutation_p.L394F|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.L394F|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron|MIR548F5_hsa-mir-548f-5|MI0006378_5'Flank	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	402	Spectrin 1.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GCTTACTTCCCAATTGTAGAA	0.403			NA											23	60					2.89027e-11	3.84299e-11	0.002299	1	0
FAM47C	442444	broad.mit.edu	37	X	37027551	37027551	+	Silent	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:37027551G>A	uc004ddl.1	+	1	1082	c.1068G>A	c.(1066-1068)CCG>CCA	p.P356P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	356										ovary(3)	3						ATCTCTGCCCGGAACCTCCAG	0.632			NA											11	57					0	0	0.001855	0	0
WDR13	64743	broad.mit.edu	37	X	48458941	48458941	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:48458941G>T	uc004dkh.1	+	6	905	c.758G>T	c.(757-759)CGA>CTA	p.R253L	WDR13_uc010nif.1_Missense_Mutation_p.R131L|WDR13_uc004dki.1_Missense_Mutation_p.R161L|WDR13_uc004dkj.1_Missense_Mutation_p.R253L|WDR13_uc004dkk.1_Missense_Mutation_p.R161L|WDR13_uc004dkl.3_Missense_Mutation_p.R161L|WDR13_uc011mme.1_Missense_Mutation_p.R131L	NM_017883	NP_060353	Q9H1Z4	WDR13_HUMAN	WD repeat domain 13 protein	253	WD 2.					cytoplasm|nucleus				ovary(2)	2						CGCTGCATCCGAGAGATCCCT	0.597			NA											12	18					1.08611e-07	1.33076e-07	0.000978	1	0
PRICKLE3	4007	broad.mit.edu	37	X	49035627	49035627	+	Silent	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:49035627C>T	uc004dmy.1	-	5	563	c.537G>A	c.(535-537)GTG>GTA	p.V179V	PRICKLE3_uc011mmv.1_Silent_p.V111V|PRICKLE3_uc011mmw.1_Silent_p.V98V|PRICKLE3_uc011mmx.1_Silent_p.V141V|PRICKLE3_uc011mmy.1_Silent_p.V166V	NM_006150	NP_006141	O43900	PRIC3_HUMAN	LIM domain only 6	179	PET.						protein binding|zinc ion binding			breast(1)	1						CAGTGATGGTCACCGGGAAGA	0.617			NA											5	15					0	0	0.000602	0	0
AKAP4	8852	broad.mit.edu	37	X	49957633	49957633	+	Silent	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:49957633A>G	uc004dow.1	-	5	1855	c.1731T>C	c.(1729-1731)TAT>TAC	p.Y577Y	AKAP4_uc004dov.1_Silent_p.Y194Y|AKAP4_uc010njp.1_Silent_p.Y399Y|AKAP4_uc004dou.1_Silent_p.Y568Y	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	577					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TCTGAGCCATATAGCCCATGG	0.478			NA											28	49					0	0	0.002836	0	0
HUWE1	10075	broad.mit.edu	37	X	53576030	53576030	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:53576030G>A	uc004dsp.2	-	67	10327	c.9925C>T	c.(9925-9927)CGT>TGT	p.R3309C	HUWE1_uc004dsn.2_Missense_Mutation_p.R2117C	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3309					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GTATGTTTACGCCCCCCTGAA	0.527			NA											6	39					0	0	0.001168	0	0
TRO	7216	broad.mit.edu	37	X	54954144	54954144	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:54954144A>G	uc004dtq.2	+	11	1915	c.1808A>G	c.(1807-1809)TAT>TGT	p.Y603C	TRO_uc004dts.2_Missense_Mutation_p.Y603C|TRO_uc004dtr.2_Missense_Mutation_p.Y603C|TRO_uc004dtt.2_RNA|TRO_uc004dtu.2_RNA|TRO_uc004dtv.2_Missense_Mutation_p.Y206C|TRO_uc011mok.1_Missense_Mutation_p.Y134C|TRO_uc004dtw.2_Missense_Mutation_p.Y206C|TRO_uc004dtx.2_Translation_Start_Site	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	603	MAGE.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						CCACCTGAATATGAGTTCTTC	0.493			NA											9	36					0	0	0.00499	0	0
USP51	158880	broad.mit.edu	37	X	55514858	55514858	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:55514858C>A	uc004dun.1	-	2	594	c.515G>T	c.(514-516)GGG>GTG	p.G172V	USP51_uc011moo.1_Intron	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	172					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						ATCCCCCGACCCGTCTAGGTC	0.627			NA											4	35					2.7689e-08	3.46353e-08	0.001984	1	0
HEPH	9843	broad.mit.edu	37	X	65409587	65409587	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:65409587G>T	uc011moz.1	+	6	939	c.879G>T	c.(877-879)GTG>GTT	p.V293V	HEPH_uc004dwn.2_Silent_p.V293V|HEPH_uc004dwo.2_Silent_p.V23V|HEPH_uc010nkr.2_Silent_p.V293V|HEPH_uc011mpa.1_Silent_p.V293V	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	290	Extracellular (Potential).|Plastocyanin-like 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						AGAAACGTGTGGCCTGGCACT	0.443			NA											40	115					2.59497e-14	3.68705e-14	0.007835	1	0
HEPH	9843	broad.mit.edu	37	X	65423337	65423337	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:65423337A>G	uc011moz.1	+	13	2278	c.2218A>G	c.(2218-2220)ATC>GTC	p.I740V	HEPH_uc004dwn.2_Missense_Mutation_p.I740V|HEPH_uc004dwo.2_Missense_Mutation_p.I470V|HEPH_uc010nkr.2_Missense_Mutation_p.I548V|HEPH_uc011mpa.1_Missense_Mutation_p.I740V|HEPH_uc010nks.2_Missense_Mutation_p.I29V	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	737	Extracellular (Potential).|Plastocyanin-like 5.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						AATCTACTATATCATGGCAGA	0.527			NA											8	53					0	0	0.004482	0	0
RAB41	347517	broad.mit.edu	37	X	69502146	69502146	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:69502146C>A	uc004dyc.2	+	1	79	c.79C>A	c.(79-81)CAG>AAG	p.Q27K	RAB41_uc010nkv.2_Missense_Mutation_p.Q17K	NM_001032726	NP_001027898	Q5JT25	RAB41_HUMAN	RAB41, member RAS oncogene family	27					protein transport|small GTPase mediated signal transduction		GTP binding			ovary(2)|breast(2)	4						AACGGAATACCAGTCTCTGTG	0.547			NA											20	88					8.34094e-07	9.84999e-07	0.008871	1	0
MAGEE1	57692	broad.mit.edu	37	X	75649135	75649135	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:75649135C>T	uc004ecm.1	+	1	1019	c.812C>T	c.(811-813)TCC>TTC	p.S271F		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	271	Pro-rich.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CCGAGCACCTCCGTGCTGCCC	0.706			NA											6	15					0	0	0.001168	0	0
POF1B	79983	broad.mit.edu	37	X	84563165	84563165	+	Silent	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:84563165G>T	uc004eer.2	-	10	1161	c.1015C>A	c.(1015-1017)CGG>AGG	p.R339R	POF1B_uc004ees.2_Silent_p.R339R	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	339	Potential.						actin binding				0						AGCTCCTCCCGTATGTTGCTA	0.358			NA											9	44					4.68919e-08	5.80489e-08	0.008291	1	0
GPRASP2	114928	broad.mit.edu	37	X	101969999	101969999	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:101969999G>C	uc004ejk.2	+	4	1536	c.202G>C	c.(202-204)GCA>CCA	p.A68P	GPRASP2_uc004ejl.2_Missense_Mutation_p.A68P|GPRASP2_uc004ejm.2_Missense_Mutation_p.A68P|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	68						cytoplasm	protein binding			ovary(1)	1						TGAGGCCCAAGCAATGTCTGG	0.577			NA											66	110					0	0	0.00361	0	0
RGAG1	57529	broad.mit.edu	37	X	109695410	109695410	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:109695410C>A	uc004eor.1	+	3	1811	c.1565C>A	c.(1564-1566)ACA>AAA	p.T522K	RGAG1_uc011msr.1_Missense_Mutation_p.T522K	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	522										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GCCTCTGAAACAATGTCCATG	0.517			NA											16	154					1.88708e-17	2.79943e-17	0.008361	1	0
ODZ1	10178	broad.mit.edu	37	X	123517813	123517813	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:123517813G>A	uc004euj.2	-	29	7011	c.6947C>T	c.(6946-6948)GCC>GTC	p.A2316V	ODZ1_uc011muj.1_Missense_Mutation_p.A2322V|ODZ1_uc010nqy.2_Missense_Mutation_p.A2323V	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2316	Extracellular (Potential).|YD 23.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ATTATCACAGGCTACATAATA	0.428			NA											37	75					0	0	0.003755	0	0
SLC9A6	10479	broad.mit.edu	37	X	135084373	135084373	+	Splice_Site	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:135084373G>T	uc004ezj.2	+	6	879	c.803_splice	c.e6+1	p.S268_splice	SLC9A6_uc004ezk.2_Splice_Site_p.S300_splice|SLC9A6_uc011mvx.1_Splice_Site_p.S248_splice	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen						regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TGCTGTCCTCGTAAGTGTTTG	0.348			NA											47	112					1.86633e-21	2.90049e-21	0.00361	1	0
ARHGEF6	9459	broad.mit.edu	37	X	135825841	135825841	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:135825841G>T	uc004fab.2	-	5	1026	c.564C>A	c.(562-564)TAC>TAA	p.Y188*	ARHGEF6_uc011mwd.1_Nonsense_Mutation_p.Y34*|ARHGEF6_uc011mwe.1_Nonsense_Mutation_p.Y34*	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	188	SH3.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					CTCGTGTGACGTAAATGATGT	0.423			NA											58	120					2.02627e-32	3.32667e-32	0.00361	1	0
F9	2158	broad.mit.edu	37	X	138612909	138612909	+	Translation_Start_Site	SNP	C	C	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:138612909C>G	uc004fas.1	+	1	15	c.-14C>G	c.(-16--12)ATCTG>ATGTG		F9_uc004fat.1_Translation_Start_Site	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein						blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	CTTTCACAATCTGCTAGCAAA	0.443			NA											28	47					0	0	0.007291	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718399	142718399	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:142718399G>A	uc004fbx.2	-	2	902	c.526C>T	c.(526-528)CGA>TGA	p.R176*	SLITRK4_uc004fby.2_Nonsense_Mutation_p.R176*	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	176	Extracellular (Potential).|LRR 5.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GATGCGAATCGGAAAATATTA	0.408			NA											19	92					0	0	0.001882	0	0
AFF2	2334	broad.mit.edu	37	X	147919180	147919180	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:147919180C>A	uc004fcp.2	+	5	1575	c.1096C>A	c.(1096-1098)CAT>AAT	p.H366N	AFF2_uc004fco.2_Intron|AFF2_uc004fcq.2_Missense_Mutation_p.H362N|AFF2_uc004fcr.2_Intron|AFF2_uc011mxb.1_Intron|AFF2_uc004fcs.2_Intron|AFF2_uc011mxc.1_Intron	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	366					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GGAGATGACCCATTCCTGGCC	0.423			NA											9	33					3.09899e-07	3.74171e-07	0.004482	1	0
MAGEA10	4109	broad.mit.edu	37	X	151303238	151303238	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:151303238C>A	uc004ffk.2	-	5	1263	c.855G>T	c.(853-855)CAG>CAT	p.Q285H	MAGEA10_uc004ffl.2_Missense_Mutation_p.Q285H	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	285	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TGCCAGGCACCTGCCGGTACT	0.522			NA											4	139					0.00116845	0.00124843	0.001168	1	0
PLXNB3	5365	broad.mit.edu	37	X	153039513	153039513	+	Missense_Mutation	SNP	G	G	T	rs146891755	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:153039513G>T	uc004fii.2	+	20	3653	c.3479G>T	c.(3478-3480)CGC>CTC	p.R1160L	PLXNB3_uc010nuk.2_Missense_Mutation_p.R1183L|PLXNB3_uc011mzd.1_Missense_Mutation_p.R799L|PLXNB3_uc004fij.1_5'Flank|SRPK3_uc004fik.2_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1160	IPT/TIG 4.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GGGCCTGCCCGCCCCTACCGC	0.706			NA											6	10					9.70103e-10	1.25577e-09	0.008291	1	0
CELA2A	63036	broad.mit.edu	37	1	15789989	15789989	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:15789989delC	uc001awk.2	+	5	491	c.465delC	c.(463-465)TGCfs	p.C155fs		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	155	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						ACTACCCCTGCTACGTCACGG	0.642			NA											8	97	---	---	---	---	NA	NA	NA	NA	NA
GPSM2	29899	broad.mit.edu	37	1	109465136	109465136	+	Frame_Shift_Del	DEL	A	A	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:109465136delA	uc010ovc.1	+	13	2034	c.1538delA	c.(1537-1539)GAAfs	p.E513fs	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Frame_Shift_Del_p.E513fs|GPSM2_uc010ove.1_Frame_Shift_Del_p.E513fs	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	513					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		TGCTTACAAGAAAAGAACTGC	0.378			NA											12	170	---	---	---	---	NA	NA	NA	NA	NA
LOR	4014	broad.mit.edu	37	1	153233535	153233536	+	In_Frame_Ins	INS	-	-	CGG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:153233535_153233536insCGG	uc001fbm.2	+	2	164_165	c.110_111insCGG	c.(109-111)TTC>TTCGGC	p.41_42insG		NM_000427	NP_000418	P23490	LORI_HUMAN	loricrin	41_42					keratinization|peptide cross-linking	cornified envelope|cytoplasm|insoluble fraction|nucleoplasm	protein binding, bridging|structural constituent of cytoskeleton				0	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			tgcggcttcttcggcggcggcg	0.153			NA											7	19	---	---	---	---	NA	NA	NA	NA	NA
FCRL5	83416	broad.mit.edu	37	1	157504517	157504517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:157504517delC	uc001fqu.2	-	8	1726	c.1568delG	c.(1567-1569)GGAfs	p.G523fs	FCRL5_uc009wsm.2_Frame_Shift_Del_p.G523fs|FCRL5_uc010phv.1_Frame_Shift_Del_p.G523fs|FCRL5_uc010phw.1_Frame_Shift_Del_p.G438fs|FCRL5_uc001fqv.1_Frame_Shift_Del_p.G523fs|FCRL5_uc010phx.1_Frame_Shift_Del_p.G274fs	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	523	Extracellular (Potential).|Ig-like C2-type 5.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GGACACTCTTCCCACAGAGGG	0.512			NA											7	79	---	---	---	---	NA	NA	NA	NA	NA
DUSP27	92235	broad.mit.edu	37	1	167096014	167096014	+	Frame_Shift_Del	DEL	T	T	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:167096014delT	uc001geb.1	+	5	1646	c.1646delT	c.(1645-1647)ATCfs	p.I549fs		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	549					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						AGATGGAAGATCAAGAGAATC	0.552			NA											17	144	---	---	---	---	NA	NA	NA	NA	NA
PLA2G4A	5321	broad.mit.edu	37	1	186946793	186946794	+	Frame_Shift_Ins	INS	-	-	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr1:186946793_186946794insT	uc001gsc.2	+	16	2038_2039	c.1833_1834insT	c.(1831-1836)GTGTTTfs	p.V611fs	PLA2G4A_uc010pos.1_Frame_Shift_Ins_p.V551fs	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	611_612	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	ATCCTTATGTGTTTGATCGGGA	0.416			NA											20	97	---	---	---	---	NA	NA	NA	NA	NA
CDNF	441549	broad.mit.edu	37	10	14870272	14870273	+	Splice_Site	INS	-	-	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr10:14870272_14870273insT	uc001inb.1	-	2	154	c.116_splice	c.e2-1	p.V39_splice	CDNF_uc010qbv.1_Splice_Site_p.V39_splice|CDNF_uc001inc.1_Splice_Site	NM_001029954	NP_001025125	Q49AH0	CDNF_HUMAN	arginine-rich, mutated in early stage							extracellular region	growth factor activity				0						TCTTTACATACTGGAAGGAACA	0.351			NA											10	137	---	---	---	---	NA	NA	NA	NA	NA
KCNA4	3739	broad.mit.edu	37	11	30033354	30033354	+	Frame_Shift_Del	DEL	T	T	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr11:30033354delT	uc001msk.2	-	2	2024	c.872delA	c.(871-873)AAGfs	p.K291fs		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	291						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCAAATCTGCTTTTTAAATTC	0.498			NA											8	74	---	---	---	---	NA	NA	NA	NA	NA
GRIN2B	2904	broad.mit.edu	37	12	14019043	14019044	+	Frame_Shift_Ins	INS	-	-	G	rs77738206		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:14019043_14019044insG	uc001rbt.2	-	2	278_279	c.99_100insC	c.(97-102)CCCAGCfs	p.P33fs		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	33_34	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ATGCCAATGCTGGGGGGGCTCT	0.589			NA											14	107	---	---	---	---	NA	NA	NA	NA	NA
NAV3	89795	broad.mit.edu	37	12	78400636	78400636	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:78400636delC	uc001syp.2	+	8	1491	c.1318delC	c.(1318-1320)CCCfs	p.P440fs	NAV3_uc001syo.2_Frame_Shift_Del_p.P440fs	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	440						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AAATAGCAGTCCCAAAGTGTC	0.423			NA								HNSCC(70;0.22)			58	120	---	---	---	---	NA	NA	NA	NA	NA
NAV3	89795	broad.mit.edu	37	12	78531021	78531021	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:78531021delC	uc001syp.2	+	19	4679	c.4506delC	c.(4504-4506)ATCfs	p.I1502fs	NAV3_uc001syo.2_Frame_Shift_Del_p.I1502fs|NAV3_uc010sub.1_Frame_Shift_Del_p.I988fs|NAV3_uc009zsf.2_Frame_Shift_Del_p.I333fs	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1502	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CAAACAGCATCCCAGCCCAAG	0.493			NA								HNSCC(70;0.22)			23	88	---	---	---	---	NA	NA	NA	NA	NA
SVOP	55530	broad.mit.edu	37	12	109332670	109332671	+	Frame_Shift_Ins	INS	-	-	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr12:109332670_109332671insT	uc010sxh.1	-	8	1001_1002	c.829_830insA	c.(829-831)ACCfs	p.T277fs		NM_018711	NP_061181	Q8N4V2	SVOP_HUMAN	SV2 related protein	277	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	ion transmembrane transporter activity				0						CCTCTTTAAGGTGGCGATTGCC	0.54			NA											64	269	---	---	---	---	NA	NA	NA	NA	NA
PRKCB	5579	broad.mit.edu	37	16	24196453	24196453	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr16:24196453delG	uc002dmd.2	+	14	1752	c.1555delG	c.(1555-1557)GGGfs	p.G519fs	PRKCB_uc002dme.2_Frame_Shift_Del_p.G519fs	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	519	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	TCAGCCCTATGGGAAGTCCGT	0.433			NA											20	223	---	---	---	---	NA	NA	NA	NA	NA
NR1D1	9572	broad.mit.edu	37	17	38252783	38252783	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:38252783delC	uc002htz.1	-	4	1143	c.517delG	c.(517-519)GAGfs	p.E173fs	NR1D1_uc010cwq.1_RNA|NR1D1_uc010cwr.1_Frame_Shift_Del_p.M1fs	NM_021724	NP_068370	P20393	NR1D1_HUMAN	nuclear receptor subfamily 1, group D, member 1	173	NR C4-type.|Nuclear receptor.				cellular response to lipopolysaccharide|negative regulation of receptor biosynthetic process|negative regulation of toll-like receptor 4 signaling pathway|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			skin(1)	1	Colorectal(19;0.000442)					GAGCAATTCTCATTCTTCAGA	0.547			NA											26	96	---	---	---	---	NA	NA	NA	NA	NA
HOXB6	3216	broad.mit.edu	37	17	46673903	46673903	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:46673903delG	uc002ins.1	-	4	872	c.547delC	c.(547-549)CTGfs	p.L183fs	HOXB5_uc002inr.2_5'Flank|HOXB6_uc010dbh.1_Frame_Shift_Del_p.L183fs|HOXB6_uc002int.1_3'UTR	NM_018952	NP_061825	P17509	HXB6_HUMAN	homeobox B6	183	Homeobox.				anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTCAGGCACAGGGCGTGCGCG	0.582			NA											38	268	---	---	---	---	NA	NA	NA	NA	NA
COL1A1	1277	broad.mit.edu	37	17	48273981	48273989	+	In_Frame_Del	DEL	AGGACCAGC	AGGACCAGC	-	rs72645337		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	AGGACCAGC	AGGACCAGC	-	-	AGGACCAGC	AGGACCAGC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr17:48273981_48273989delAGGACCAGC	uc002iqm.2	-	12	973_981	c.847_855delGCTGGTCCT	c.(847-855)GCTGGTCCTdel	p.AGP283del		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	283_285	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CTCTTACCTTAGGACCAGCAGGACCAGCA	0.507			NA	T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						18	464	---	---	---	---	NA	NA	NA	NA	NA
REV1	51455	broad.mit.edu	37	2	100027159	100027159	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:100027159delG	uc002tad.2	-	14	2555	c.2343delC	c.(2341-2343)GCCfs	p.A781fs	REV1_uc002tac.2_Frame_Shift_Del_p.A780fs	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	781					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						GAGCTTACCTGGCAATGTTAT	0.378			NA						DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					9	231	---	---	---	---	NA	NA	NA	NA	NA
GCC2	9648	broad.mit.edu	37	2	109087055	109087056	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	AG	AG	-	-	AG	AG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr2:109087055_109087056delAG	uc002tec.2	+	6	1424_1425	c.1270_1271delAG	c.(1270-1272)AGAfs	p.R424fs	GCC2_uc002ted.2_Frame_Shift_Del_p.R323fs	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	424	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ACAGCATAACAGAGAAGTACAG	0.292			NA											7	87	---	---	---	---	NA	NA	NA	NA	NA
PTGIS	5740	broad.mit.edu	37	20	48140741	48140741	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr20:48140741delG	uc002xut.2	-	6	763	c.709delC	c.(709-711)CTGfs	p.L237fs	PTGIS_uc010zyi.1_Frame_Shift_Del_p.L98fs	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	237					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	AGCTTCCACAGGCGACTTTTG	0.607			NA											18	161	---	---	---	---	NA	NA	NA	NA	NA
PPIL2	23759	broad.mit.edu	37	22	22039174	22039176	+	In_Frame_Del	DEL	AGA	AGA	-	rs140641317		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	AGA	AGA	-	-	AGA	AGA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:22039174_22039176delAGA	uc010gtj.1	+	10	802_804	c.686_688delAGA	c.(685-690)GAGAAG>GAG	p.K232del	PPIL2_uc002zvh.3_In_Frame_Del_p.K232del|PPIL2_uc002zvi.3_In_Frame_Del_p.K232del|PPIL2_uc002zvg.3_In_Frame_Del_p.K232del|PPIL2_uc011aij.1_In_Frame_Del_p.K211del|PPIL2_uc002zvk.3_5'Flank	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	232					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					AAGGCCCCGGAGAAGAAGAAAGT	0.571			NA											22	54	---	---	---	---	NA	NA	NA	NA	NA
TCN2	6948	broad.mit.edu	37	22	31013404	31013407	+	Frame_Shift_Del	DEL	ACAG	ACAG	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	ACAG	ACAG	-	-	ACAG	ACAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr22:31013404_31013407delACAG	uc003aip.1	+	7	1186_1189	c.1028_1031delACAG	c.(1027-1032)TACAGAfs	p.Y343fs	TCN2_uc003aiq.1_Frame_Shift_Del_p.Y339fs|TCN2_uc003air.1_Frame_Shift_Del_p.Y316fs	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	343_344					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTGCCGCCGTACAGACAGTCCATC	0.559			NA											11	93	---	---	---	---	NA	NA	NA	NA	NA
ARPP21	10777	broad.mit.edu	37	3	35750461	35750461	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:35750461delC	uc003cgb.2	+	11	1060	c.796delC	c.(796-798)CAAfs	p.Q266fs	ARPP21_uc003cga.2_Intron|ARPP21_uc011axy.1_Intron|ARPP21_uc003cgf.2_Intron	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	266						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TTCTGTTCAGCAAAACAGAAT	0.368			NA											7	53	---	---	---	---	NA	NA	NA	NA	NA
CCR5	1234	broad.mit.edu	37	3	46415173	46415173	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:46415173delC	uc003cpo.3	+	3	902	c.780delC	c.(778-780)TTCfs	p.F260fs	CCR5_uc010hjd.2_Frame_Shift_Del_p.F260fs	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	260	Helical; Name=6; (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	TGAACACCTTCCAGGAATTCT	0.473			NA											68	488	---	---	---	---	NA	NA	NA	NA	NA
FEZF2	55079	broad.mit.edu	37	3	62358243	62358243	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr3:62358243delC	uc003dlh.2	-	1	508	c.301delG	c.(301-303)GCGfs	p.A101fs	FEZF2_uc003dli.2_Frame_Shift_Del_p.A101fs	NM_018008	NP_060478	Q8TBJ5	FEZF2_HUMAN	FEZ family zinc finger 2	101					transcription, DNA-dependent	nucleus	zinc ion binding			lung(1)	1		Lung SC(41;0.0262)		BRCA - Breast invasive adenocarcinoma(55;0.000221)|KIRC - Kidney renal clear cell carcinoma(15;0.00834)|Kidney(15;0.00957)		ccgccgccCGCCCGGAGGCTG	0.507	NSCLC(170;1772 2053 12525 15604 23984)		NA											11	13	---	---	---	---	NA	NA	NA	NA	NA
KIAA1211	57482	broad.mit.edu	37	4	57182816	57182817	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr4:57182816_57182817insA	uc003hbk.2	+	8	3539_3540	c.3148_3149insA	c.(3148-3150)CAAfs	p.Q1050fs	KIAA1211_uc010iha.2_Frame_Shift_Ins_p.Q1043fs|KIAA1211_uc011bzz.1_Frame_Shift_Ins_p.Q960fs|KIAA1211_uc003hbm.1_Frame_Shift_Ins_p.Q936fs	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	1050										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					TGCCACTCAGCAAGAGAAACCT	0.505			NA											10	51	---	---	---	---	NA	NA	NA	NA	NA
VCAN	1462	broad.mit.edu	37	5	82815951	82815966	+	Frame_Shift_Del	DEL	TAATTATGCCTGATAA	TAATTATGCCTGATAA	-	rs138840154		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	TAATTATGCCTGATAA	TAATTATGCCTGATAA	-	-	TAATTATGCCTGATAA	TAATTATGCCTGATAA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:82815951_82815966delTAATTATGCCTGATAA	uc003kii.3	+	7	2182_2197	c.1826_1841delTAATTATGCCTGATAA	c.(1825-1842)TTAATTATGCCTGATAATfs	p.L609fs	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Frame_Shift_Del_p.L609fs|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	609_614	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GTTTCCCCTTTAATTATGCCTGATAATAATGGATCA	0.412			NA											10	129	---	---	---	---	NA	NA	NA	NA	NA
DMXL1	1657	broad.mit.edu	37	5	118556759	118556759	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:118556759delG	uc003ksd.2	+	36	8378	c.8197delG	c.(8197-8199)GGCfs	p.G2733fs	DMXL1_uc010jcl.1_Frame_Shift_Del_p.G2754fs	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	2733										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TACACAGACTGGCAGAGGAGC	0.363			NA											7	35	---	---	---	---	NA	NA	NA	NA	NA
ODZ2	57451	broad.mit.edu	37	5	167674040	167674040	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr5:167674040delC	uc010jjd.2	+	27	6069	c.6069delC	c.(6067-6069)GTCfs	p.V2023fs	ODZ2_uc003lzr.3_Frame_Shift_Del_p.V1793fs|ODZ2_uc003lzt.3_Frame_Shift_Del_p.V1396fs|ODZ2_uc010jje.2_Frame_Shift_Del_p.V1287fs	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CAGAGATTGTCTACGACAGTA	0.532			NA											30	81	---	---	---	---	NA	NA	NA	NA	NA
GOPC	57120	broad.mit.edu	37	6	117896421	117896421	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:117896421delC	uc003pxu.2	-	4	799	c.569delG	c.(568-570)CGTfs	p.R190fs	GOPC_uc003pxq.1_5'Flank|GOPC_uc003pxv.2_Frame_Shift_Del_p.R182fs	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	190	Potential.				apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		TATATGTCTACGAAGGGCTTC	0.408			NA	O	ROS1	glioblastoma								9	84	---	---	---	---	NA	NA	NA	NA	NA
SERAC1	84947	broad.mit.edu	37	6	158571537	158571537	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr6:158571537delC	uc003qrc.2	-	4	355	c.213delG	c.(211-213)ATGfs	p.M71fs	SERAC1_uc003qrb.2_5'UTR	NM_032861	NP_116250	Q96JX3	SRAC1_HUMAN	serine active site containing 1	71					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds				0		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		TATATGACTTCATTTTTTCTC	0.328			NA											21	86	---	---	---	---	NA	NA	NA	NA	NA
AKAP9	10142	broad.mit.edu	37	7	91625048	91625049	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:91625048_91625049insA	uc003ulg.2	+	7	1089_1090	c.864_865insA	c.(862-867)CAGAAAfs	p.Q288fs	AKAP9_uc003uld.3_Frame_Shift_Ins_p.Q288fs|AKAP9_uc003ule.2_Frame_Shift_Ins_p.Q300fs|AKAP9_uc003ulf.2_Frame_Shift_Ins_p.Q288fs	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	300_301	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAGATTATCAGAAAAAGAAAGA	0.347			NA	T	BRAF	papillary thyroid								7	103	---	---	---	---	NA	NA	NA	NA	NA
GIGYF1	64599	broad.mit.edu	37	7	100283029	100283029	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:100283029delG	uc003uwg.1	-	10	2139	c.1130delC	c.(1129-1131)CCAfs	p.P377fs		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	377										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CCCCCAGAGTGGGCCCAGGGT	0.642			NA											10	132	---	---	---	---	NA	NA	NA	NA	NA
MYL10	93408	broad.mit.edu	37	7	101265420	101265421	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	AT	AT	-	-	AT	AT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:101265420_101265421delAT	uc003uyr.2	-	5	587_588	c.409_410delAT	c.(409-411)ATCfs	p.I137fs		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	137						mitochondrion	calcium ion binding			ovary(1)|breast(1)	2						CGTGAAGTTGATGGGTCCGGGG	0.609	Esophageal Squamous(24;575 709 17516 40384 51639)		NA											12	203	---	---	---	---	NA	NA	NA	NA	NA
COG5	10466	broad.mit.edu	37	7	107204325	107204325	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr7:107204325delC	uc003ved.2	-	1	635	c.110delG	c.(109-111)GGCfs	p.G37fs	COG5_uc003vec.2_Frame_Shift_Del_p.G37fs|COG5_uc003vee.2_Frame_Shift_Del_p.G37fs|DUS4L_uc003veg.2_5'Flank|DUS4L_uc003veh.2_5'Flank|DUS4L_uc011klw.1_5'Flank|DUS4L_uc011klx.1_5'Flank	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	37					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						AGCGACGCTGCCGCCGCCACC	0.677			NA											12	81	---	---	---	---	NA	NA	NA	NA	NA
RAB11FIP1	80223	broad.mit.edu	37	8	37728847	37728856	+	Frame_Shift_Del	DEL	GTCTCCGAGG	GTCTCCGAGG	-	rs75558150	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	GTCTCCGAGG	GTCTCCGAGG	-	-	GTCTCCGAGG	GTCTCCGAGG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:37728847_37728856delGTCTCCGAGG	uc003xkm.1	-	4	3508_3517	c.3464_3473delCCTCGGAGAC	c.(3463-3474)CCCTCGGAGACAfs	p.P1155fs	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Frame_Shift_Del_p.P484fs|RAB11FIP1_uc003xko.1_Frame_Shift_Del_p.P484fs|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	1155_1158					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			GACTGGATGTGTCTCCGAGGGTGAGACCCA	0.538			NA									OREG0018713	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	163	---	---	---	---	NA	NA	NA	NA	NA
LRP12	29967	broad.mit.edu	37	8	105510050	105510051	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:105510050_105510051insA	uc003yma.2	-	5	824_825	c.729_730insT	c.(727-732)ATTGACfs	p.I243fs	LRP12_uc003ymb.2_Frame_Shift_Ins_p.I224fs|LRP12_uc003ylz.2_5'Flank	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	243_244	Extracellular (Potential).|LDL-receptor class A 2.				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TCAAGGCAGTCAATGTTCCCAT	0.406			NA											23	182	---	---	---	---	NA	NA	NA	NA	NA
ZFAT	57623	broad.mit.edu	37	8	135669873	135669874	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chr8:135669873_135669874insA	uc003yup.2	-	2	301_302	c.126_127insT	c.(124-129)GTTGATfs	p.V42fs	ZFAT_uc003yun.2_Frame_Shift_Ins_p.V30fs|ZFAT_uc003yuo.2_Frame_Shift_Ins_p.V30fs|ZFAT_uc010meh.2_Frame_Shift_Ins_p.V30fs|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Frame_Shift_Ins_p.V30fs|ZFAT_uc010mej.2_Frame_Shift_Ins_p.V42fs|ZFAT_uc003yur.2_Frame_Shift_Ins_p.V30fs	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	42_43					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			ATAATCTCATCAACATTAACCC	0.5			NA											17	121	---	---	---	---	NA	NA	NA	NA	NA
TGIF2LX	90316	broad.mit.edu	37	X	89177383	89177383	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e4b2be6-e149-4c22-93e1-512c3c6bbea8	27409a77-e75c-421e-9540-b45e9b98c73e	g.chrX:89177383delG	uc004efe.2	+	2	348	c.299delG	c.(298-300)TGGfs	p.W100fs		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	100	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						ATTTCTAACTGGTTTATCAAT	0.468			NA											43	275	---	---	---	---	NA	NA	NA	NA	NA
