Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DNAJC11	55735	broad.mit.edu	37	1	6712898	6712898	+	Silent	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:6712898T>G	uc001aof.2	-	6	727	c.621A>C	c.(619-621)GGA>GGC	p.G207G	DNAJC11_uc010nzt.1_Silent_p.G169G|DNAJC11_uc001aog.2_Silent_p.G207G|DNAJC11_uc010nzu.1_Silent_p.G117G	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	207					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCTCCCCATCCCTTTGCCG	0.478			NA											3	111					0	0	0.000248	0	0
PTCHD2	57540	broad.mit.edu	37	1	11561596	11561596	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:11561596C>A	uc001ash.3	+	2	685	c.547C>A	c.(547-549)CCA>ACA	p.P183T	PTCHD2_uc001asi.1_Missense_Mutation_p.P183T	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	183	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		ACTCGGTGGCCCAGGCCCTTA	0.692			NA											7	13					8.12818e-05	0.000131796	0.001984	1	0
C1orf187	374946	broad.mit.edu	37	1	11769501	11769501	+	Silent	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:11769501C>G	uc001asr.1	+	3	761	c.621C>G	c.(619-621)CCC>CCG	p.P207P		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	207					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		TGATCCTGCCCGTCACCTCCC	0.443			NA											7	11					0	0	0.00308	0	0
CROCC	9696	broad.mit.edu	37	1	17272844	17272844	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:17272844G>A	uc001azt.2	+	16	2296	c.2227G>A	c.(2227-2229)GCC>ACC	p.A743T	CROCC_uc009voz.1_Missense_Mutation_p.A506T|CROCC_uc001azu.2_Missense_Mutation_p.A46T	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	743	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CAAGCTGAGCGCCCTCAACGA	0.657			NA											11	52					0	0	0.000978	0	0
CSMD2	114784	broad.mit.edu	37	1	34082549	34082549	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:34082549G>A	uc001bxn.1	-	39	5882	c.5853C>T	c.(5851-5853)CCC>CCT	p.P1951P	CSMD2_uc001bxm.1_Silent_p.P1991P|CSMD2_uc001bxo.1_Silent_p.P864P	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1951	Sushi 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCACTGTTCCGGGCATGCAGG	0.532			NA											22	55					0	0	0.001882	0	0
HECTD3	79654	broad.mit.edu	37	1	45470021	45470021	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:45470021T>A	uc009vxk.2	-	17	2269	c.2171A>T	c.(2170-2172)AAG>ATG	p.K724M	HECTD3_uc001cmx.3_Missense_Mutation_p.K73M|HECTD3_uc001cmy.3_Missense_Mutation_p.K334M|HECTD3_uc010olh.1_Missense_Mutation_p.K440M	NM_024602	NP_078878	Q5T447	HECD3_HUMAN	HECT domain containing 3	724	HECT.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity				0	Acute lymphoblastic leukemia(166;0.155)					TGGTACCACCTTCAGCAGACC	0.597			NA											28	62					0	0	0.001786	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	77093237	77093237	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:77093237T>G	uc001dhh.2	+	4	887	c.724T>G	c.(724-726)TAC>GAC	p.Y242D	ST6GALNAC3_uc010orh.1_Intron	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	242	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						AAATGACACCTACTGCAAGTA	0.403			NA											29	140					0	0	0.007291	0	0
CLCA4	22802	broad.mit.edu	37	1	87045796	87045796	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:87045796T>A	uc009wcs.2	+	14	2572	c.2528T>A	c.(2527-2529)ATT>AAT	p.I843N	CLCA4_uc009wct.2_Missense_Mutation_p.I606N|CLCA4_uc009wcu.2_Missense_Mutation_p.I663N	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	843						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CACATATTTATTGCCATTAAA	0.343			NA											15	34					0	0	0.00245	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94335424	94335424	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:94335424T>C	uc001dqf.2	-	7	2292	c.2254A>G	c.(2254-2256)AAG>GAG	p.K752E	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	752					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		CGAAATTTCTTCTTCTTTCGG	0.338			NA											18	34					0	0	0.00499	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767569	143767569	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:143767569C>T	uc001ejt.2	-	1	313	c.280G>A	c.(280-282)GGT>AGT	p.G94S		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	94	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						ATGCCAGAACCTGTATGCTTT	0.483			NA											34	196					0	0	0.00361	0	0
HRNR	388697	broad.mit.edu	37	1	152192644	152192644	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:152192644G>T	uc001ezt.1	-	3	1537	c.1461C>A	c.(1459-1461)CAC>CAA	p.H487Q		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	487	5.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCGGAGGAGTGACCTGAGC	0.532			NA											110	313					2.91707e-64	8.08889e-64	0.00361	1	0
ASH1L	55870	broad.mit.edu	37	1	155327141	155327141	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:155327141G>C	uc009wqq.2	-	15	7516	c.7036C>G	c.(7036-7038)CAA>GAA	p.Q2346E	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.Q2341E	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2346					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			ATCTGTAATTGGGGGGTCAAT	0.358			NA											9	96					0	0	0.006214	0	0
C1orf182	128229	broad.mit.edu	37	1	156314480	156314480	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:156314480G>T	uc001foo.2	+	3	506	c.144G>T	c.(142-144)CAG>CAT	p.Q48H	C1orf182_uc009wry.2_Missense_Mutation_p.Q48H|C1orf182_uc001fop.3_Missense_Mutation_p.Q48H	NM_144627	NP_653228	Q96A04	CA182_HUMAN	SSTK-interacting protein	48											0	Hepatocellular(266;0.158)					TGAACATCCAGACAACAAAGC	0.507			NA											36	103					2.26627e-22	5.83337e-22	0.007835	1	0
CD1A	909	broad.mit.edu	37	1	158226720	158226720	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:158226720G>T	uc001frt.2	+	4	1282	c.749G>T	c.(748-750)GGG>GTG	p.G250V		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	250	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	ACTCAGCGAGGGGACATCTTG	0.627			NA											29	84					5.45727e-16	1.26821e-15	0.008361	1	0
CD1E	913	broad.mit.edu	37	1	158324199	158324199	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:158324199G>T	uc001fse.2	+	2	330	c.91G>T	c.(91-93)GCA>TCA	p.A31S	CD1E_uc010pid.1_Missense_Mutation_p.A29S|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.A31S|CD1E_uc001fsk.2_Missense_Mutation_p.A31S|CD1E_uc001fsj.2_Missense_Mutation_p.A31S|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.A31S|CD1E_uc001fry.2_Missense_Mutation_p.A31S|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.A31S|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Missense_Mutation_p.A31S|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	31					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TCATCTAGCAGCAGAGGAGCA	0.527			NA											51	164					1.77205e-36	4.7979e-36	0.00361	1	0
CD1E	913	broad.mit.edu	37	1	158324240	158324240	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:158324240C>A	uc001fse.2	+	2	371	c.132C>A	c.(130-132)TCC>TCA	p.S44S	CD1E_uc010pid.1_Silent_p.S42S|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Silent_p.S44S|CD1E_uc001fsk.2_Silent_p.S44S|CD1E_uc001fsj.2_Silent_p.S44S|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Silent_p.S44S|CD1E_uc001fry.2_Silent_p.S44S|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Silent_p.S44S|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Silent_p.S44S|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	44					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					AAACTTCCTCCTTTGCCAACC	0.557			NA											33	116					2.70662e-09	5.19599e-09	0.001786	1	0
OR10X1	128367	broad.mit.edu	37	1	158548798	158548798	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:158548798G>T	uc010pin.1	-	1	892	c.892C>A	c.(892-894)CTC>ATC	p.L298I		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	298	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ATGGGGCTGAGGAAGGGGGTA	0.398			NA											42	112					2.40579e-17	5.75385e-17	0.00623	1	0
SPTA1	6708	broad.mit.edu	37	1	158582642	158582642	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:158582642C>A	uc001fst.1	-	51	7298	c.7099G>T	c.(7099-7101)GGC>TGC	p.G2367C		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2367	EF-hand 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TATGACTTGCCCTCTGCCAGG	0.453			NA											45	97					9.84934e-19	2.41603e-18	0.002522	1	0
SPTA1	6708	broad.mit.edu	37	1	158627430	158627430	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:158627430A>G	uc001fst.1	-	19	2841	c.2642T>C	c.(2641-2643)ATG>ACG	p.M881T		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	881	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GAGAGACTCCATATTCTGGTT	0.468			NA											14	190					0	0	0.00245	0	0
APCS	325	broad.mit.edu	37	1	159558144	159558144	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:159558144G>T	uc001ftv.2	+	2	414	c.318G>T	c.(316-318)AAG>AAT	p.K106N		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	106	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					TTATCGAAAAGTTCCCGGCTC	0.438			NA											17	72					5.3912e-06	9.29295e-06	0.006122	1	0
ATP1A4	480	broad.mit.edu	37	1	160156112	160156112	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:160156112G>T	uc001fve.3	+	21	3495	c.3016G>T	c.(3016-3018)GTC>TTC	p.V1006F	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Missense_Mutation_p.V509F|ATP1A4_uc001fvh.2_Missense_Mutation_p.V142F	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	1006	Helical; (Potential).			ITWWLCAIPYSILIFVYDEIRKLLIRQ -> WSFALTAQAG VKWRILGLLQPLPPRFK (in Ref. 6; BAC05228).	ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCTCATCTTCGTCTATGATGA	0.557			NA											80	256					2.43828e-56	6.72872e-56	0.00361	1	0
BLZF1	8548	broad.mit.edu	37	1	169346053	169346053	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:169346053C>T	uc001gfx.1	+	3	741	c.304C>T	c.(304-306)CTG>TTG	p.L102L	BLZF1_uc001gfw.2_Silent_p.L102L|BLZF1_uc001gfy.2_Silent_p.L102L|BLZF1_uc009wvp.1_Silent_p.L79L	NM_003666	NP_003657	Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	102					cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			skin(1)	1	all_hematologic(923;0.208)					GGTTAAGTCTCTGGGACATCA	0.373			NA											31	90					0	0	0.002096	0	0
TNN	63923	broad.mit.edu	37	1	175086266	175086266	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:175086266G>T	uc001gkl.1	+	10	2424	c.2311G>T	c.(2311-2313)GTG>TTG	p.V771L		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	771	Fibronectin type-III 6.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GAGGCCGGGTGTGGAGTACAC	0.612			NA											30	79					1.39806e-14	3.09839e-14	0.008361	1	0
RGS18	64407	broad.mit.edu	37	1	192153501	192153501	+	Silent	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:192153501T>A	uc001gsg.2	+	5	701	c.525T>A	c.(523-525)GCT>GCA	p.A175A		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	175	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						GTTTTGATGCTGCACAAAGCA	0.388			NA											38	63					0	0	0.004878	0	0
ASPM	259266	broad.mit.edu	37	1	197073015	197073015	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:197073015T>G	uc001gtu.2	-	18	5623	c.5366A>C	c.(5365-5367)AAA>ACA	p.K1789T	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1789					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GACCTGTGCTTTGTATGCATG	0.363			NA											57	114					0	0	0.00361	0	0
KCTD3	51133	broad.mit.edu	37	1	215747143	215747143	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:215747143G>T	uc001hks.2	+	2	392	c.98G>T	c.(97-99)AGA>ATA	p.R33I	KCTD3_uc001hkt.2_Missense_Mutation_p.R33I|KCTD3_uc010pub.1_5'UTR	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	33	BTB.					voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		AGTACCTCAAGACAAACTCTT	0.254			NA											46	146					4.1673e-28	1.11257e-27	0.00361	1	0
USH2A	7399	broad.mit.edu	37	1	216373189	216373189	+	Silent	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:216373189G>T	uc001hku.1	-	17	3978	c.3591C>A	c.(3589-3591)TCC>TCA	p.S1197S	USH2A_uc001hkv.2_Silent_p.S1197S	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1197	Extracellular (Potential).|Fibronectin type-III 2.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GACCTTCGTAGGAAACACATG	0.468			NA								HNSCC(13;0.011)			29	116					9.80776e-20	2.45836e-19	0.00632	1	0
SNAP47	116841	broad.mit.edu	37	1	227946813	227946813	+	Silent	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:227946813G>T	uc001hrf.2	+	3	1164	c.750G>T	c.(748-750)GGG>GGT	p.G250G	SNAP47_uc001hqz.2_Silent_p.G205G|SNAP47_uc001hra.2_Silent_p.G8G|SNAP47_uc001hrd.2_Silent_p.G250G|SNAP47_uc001hre.2_Silent_p.G8G|SNAP47_uc001hrg.1_Silent_p.G205G	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	250						endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						AACCCTTTGGGAAAGAAGGGA	0.488			NA											44	128					5.48756e-27	1.45827e-26	0.002852	1	0
WNT3A	89780	broad.mit.edu	37	1	228238405	228238405	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:228238405C>A	uc001hrq.1	+	3	440	c.362C>A	c.(361-363)GCC>GAC	p.A121D	WNT3A_uc001hrp.1_Missense_Mutation_p.A121D	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	121					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				GCCGGTGTGGCCTTTGCAGTG	0.632			NA											16	41					1.5739e-10	3.11523e-10	0.004007	1	0
C1orf198	84886	broad.mit.edu	37	1	231004224	231004224	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:231004224C>A	uc001hub.2	-	1	79	c.35G>T	c.(34-36)CGC>CTC	p.R12L	C1orf198_uc001huc.1_Intron|C1orf198_uc001hud.1_Intron	NM_032800	NP_116189	Q9H425	CA198_HUMAN	hypothetical protein LOC84886 isoform 1	12											0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				GACCGCCGAGCGCGAAGCCGC	0.488			NA											3	12					0.004672	0.00711334	0.004672	1	0
RYR2	6262	broad.mit.edu	37	1	237774250	237774250	+	Silent	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:237774250T>A	uc001hyl.1	+	36	4992	c.4872T>A	c.(4870-4872)CCT>CCA	p.P1624P		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1624	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GTTTGGATCCTCTGCAGTTCA	0.517			NA											6	21					0	0	0.001984	0	0
OR2W5	441932	broad.mit.edu	37	1	247654685	247654685	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:247654685G>T	uc001icz.1	+	1	256	c.256G>T	c.(256-258)GGG>TGG	p.G86W		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	86					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GTGGAACCTGGGGGGTCCAGA	0.537			NA											34	57					1.61788e-16	3.80599e-16	0.002445	1	0
OR2T12	127064	broad.mit.edu	37	1	248458178	248458178	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:248458178C>A	uc010pzj.1	-	1	703	c.703G>T	c.(703-705)GCC>TCC	p.A235S		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	235	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			GTGGCAAAGGCCTTCTTGCGG	0.517			NA											34	99					8.4185e-14	1.80307e-13	0.002445	1	0
OR2T3	343173	broad.mit.edu	37	1	248637213	248637213	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:248637213G>T	uc001iel.1	+	1	562	c.562G>T	c.(562-564)GCC>TCC	p.A188S		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGAGACTCCTGCCCTGCTGAA	0.512			NA											79	75					7.09011e-46	1.94724e-45	0.00361	1	0
KIN	22944	broad.mit.edu	37	10	7820806	7820806	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:7820806C>T	uc001ijt.2	-	5	601	c.553G>A	c.(553-555)GAA>AAA	p.E185K	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Missense_Mutation_p.E185K|KIN_uc010qba.1_Missense_Mutation_p.E79K	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	185					DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCCACCTGTTCCTTCCCTTCC	0.383			NA											84	220					0	0	0.00361	0	0
ZNF37A	7587	broad.mit.edu	37	10	38403681	38403681	+	Splice_Site	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:38403681A>G	uc001izk.2	+	6	835	c.16_splice	c.e6-2	p.G6_splice	ZNF37A_uc001izl.2_Splice_Site_p.G6_splice|ZNF37A_uc001izm.2_Splice_Site_p.G6_splice	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						GTGATTTTCCAGGGATCAGTG	0.428			NA											29	133					0	0	0.001786	0	0
GDF10	2662	broad.mit.edu	37	10	48429290	48429290	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:48429290C>A	uc001jfb.2	-	2	1052	c.596G>T	c.(595-597)GGC>GTC	p.G199V	GDF10_uc009xnp.2_Missense_Mutation_p.G198V|GDF10_uc009xnq.1_Missense_Mutation_p.G199V	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	199					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CTGCCACAGGCCGCGCGGTGG	0.721			NA											4	25					3.59834e-05	5.86774e-05	0.001168	1	0
NCOA4	8031	broad.mit.edu	37	10	51585241	51585241	+	Missense_Mutation	SNP	A	A	G	rs61754798	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:51585241A>G	uc001jis.3	+	8	1543	c.1340A>G	c.(1339-1341)AAA>AGA	p.K447R	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|NCOA4_uc009xon.2_Missense_Mutation_p.K463R|NCOA4_uc010qhd.1_Missense_Mutation_p.K463R|NCOA4_uc010qhe.1_Missense_Mutation_p.K347R|NCOA4_uc010qhf.1_Missense_Mutation_p.K281R|NCOA4_uc001jit.2_Missense_Mutation_p.K447R|NCOA4_uc009xoo.2_Missense_Mutation_p.K447R	NM_001145263	NP_001138735	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4 isoform 3	447					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			central_nervous_system(1)|kidney(1)	2						GTGGAACCCAAACCTGAGCCT	0.428			NA	T	RET	papillary thyroid 								3	198					0	0	0.004672	0	0
SGMS1	259230	broad.mit.edu	37	10	52103484	52103484	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:52103484C>A	uc001jje.2	-	7	1345	c.391G>T	c.(391-393)GAG>TAG	p.E131*	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Nonsense_Mutation_p.E131*|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	137					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						TTGCCCCACTCCATGGGGTAC	0.488			NA											36	78					5.71845e-15	1.28218e-14	0.005524	1	0
A1CF	29974	broad.mit.edu	37	10	52595888	52595888	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:52595888C>A	uc001jjj.2	-	6	738	c.550G>T	c.(550-552)GTG>TTG	p.V184L	A1CF_uc010qhn.1_Missense_Mutation_p.V192L|A1CF_uc001jji.2_Missense_Mutation_p.V184L|A1CF_uc001jjh.2_Missense_Mutation_p.V192L|A1CF_uc010qho.1_Missense_Mutation_p.V192L|A1CF_uc009xov.2_Missense_Mutation_p.V184L	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	184	RRM 2.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TCATACTCCACGAAGGCAAAG	0.488			NA											11	124					2.27111e-07	4.11236e-07	0.001368	1	0
MYPN	84665	broad.mit.edu	37	10	69909840	69909840	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:69909840C>G	uc001jnm.3	+	7	1474	c.1289C>G	c.(1288-1290)CCT>CGT	p.P430R	MYPN_uc001jnl.1_Missense_Mutation_p.P430R|MYPN_uc001jnn.3_Missense_Mutation_p.P155R|MYPN_uc001jno.3_Missense_Mutation_p.P430R|MYPN_uc001jnp.1_Missense_Mutation_p.P430R|MYPN_uc009xps.2_Missense_Mutation_p.P430R|MYPN_uc009xpt.2_Missense_Mutation_p.P430R|MYPN_uc010qit.1_Missense_Mutation_p.P136R|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	430	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GATGGAAAACCTATCATTGCA	0.368			NA											22	60					0	0	0.004656	0	0
PSAP	5660	broad.mit.edu	37	10	73579616	73579616	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:73579616C>A	uc001jsm.2	-	10	1151	c.1047G>T	c.(1045-1047)CTG>CTT	p.L349L	PSAP_uc001jsl.2_Silent_p.L73L	NM_002778	NP_002769	P07602	SAP_HUMAN	prosaposin isoform a preproprotein	349	Saposin B-type 3.		L -> P (in AGD).		glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			ovary(1)	1						GGGACTTCGGCAGCTTCGAGC	0.572			NA											10	21					1.58986e-06	2.78226e-06	0.008291	1	0
BTAF1	9044	broad.mit.edu	37	10	93786944	93786944	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:93786944A>T	uc001khr.2	+	37	5391	c.5293A>T	c.(5293-5295)ATG>TTG	p.M1765L		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1765	Helicase C-terminal.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				AGAAAAAATAATGGGGTTGCA	0.378			NA											20	91					0	0	0.007413	0	0
GSTO2	119391	broad.mit.edu	37	10	106039228	106039228	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:106039228A>T	uc001kyb.2	+	5	1095	c.467A>T	c.(466-468)GAG>GTG	p.E156V	GSTO2_uc010qqw.1_Missense_Mutation_p.E156V|GSTO2_uc010qqx.1_Intron|GSTO2_uc001kyc.2_Missense_Mutation_p.E128V|GSTO2_uc010qqy.1_Intron	NM_183239	NP_899062	Q9H4Y5	GSTO2_HUMAN	glutathione S-transferase omega 2	156	GST C-terminal.				water-soluble vitamin metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.178)		Epithelial(162;1.14e-09)|all cancers(201;3.89e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0155)	Glutathione(DB00143)	AACCTGGAAGAGGTACAAAAA	0.527			NA											6	53					0	0	0.001168	0	0
MXI1	4601	broad.mit.edu	37	10	111987959	111987959	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:111987959G>T	uc001kza.2	+	2	293	c.86G>T	c.(85-87)GGC>GTC	p.G29V	MXI1_uc001kyy.2_Missense_Mutation_p.G96V|MXI1_uc001kyz.2_5'UTR|MXI1_uc010qrc.1_Missense_Mutation_p.G29V|MXI1_uc009xxu.2_Missense_Mutation_p.G26V|MXI1_uc009xxv.2_RNA	NM_005962	NP_005953	P50539	MXI1_HUMAN	MAX interactor 1 isoform a	29					cytoplasmic sequestering of transcription factor|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription corepressor activity				0		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;1.33e-05)|all cancers(201;0.000277)|BRCA - Breast invasive adenocarcinoma(275;0.127)		TGTGAACATGGCTACGCCTCT	0.517			NA											19	55					1.01871e-10	2.03742e-10	0.008871	1	0
GRK5	2869	broad.mit.edu	37	10	121184541	121184541	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:121184541C>T	uc001led.2	+	6	710	c.477C>T	c.(475-477)CAC>CAT	p.H159H	GRK5_uc009xzh.2_Silent_p.H54H|GRK5_uc010qta.1_Silent_p.H54H	NM_005308	NP_005299	P34947	GRK5_HUMAN	G protein-coupled receptor kinase 5	159	N-terminal.|RGS.				G-protein signaling, coupled to cAMP nucleotide second messenger|regulation of G-protein coupled receptor protein signaling pathway|tachykinin receptor signaling pathway	cytoplasm|plasma membrane|soluble fraction	ATP binding|G-protein coupled receptor kinase activity|phospholipid binding|protein kinase C binding|signal transducer activity			lung(2)|stomach(1)	3		Lung NSC(174;0.0971)|all_lung(145;0.127)|Ovarian(717;0.249)		all cancers(201;0.0227)		AACCATTCCACGAATATCTGG	0.502			NA											8	79					0	0	0.008291	0	0
GRK5	2869	broad.mit.edu	37	10	121199253	121199253	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:121199253C>T	uc001led.2	+	10	1173	c.940C>T	c.(940-942)CCT>TCT	p.P314S	GRK5_uc009xzh.2_Missense_Mutation_p.P209S	NM_005308	NP_005299	P34947	GRK5_HUMAN	G protein-coupled receptor kinase 5	314	Protein kinase.				G-protein signaling, coupled to cAMP nucleotide second messenger|regulation of G-protein coupled receptor protein signaling pathway|tachykinin receptor signaling pathway	cytoplasm|plasma membrane|soluble fraction	ATP binding|G-protein coupled receptor kinase activity|phospholipid binding|protein kinase C binding|signal transducer activity			lung(2)|stomach(1)	3		Lung NSC(174;0.0971)|all_lung(145;0.127)|Ovarian(717;0.249)		all cancers(201;0.0227)		AGATCTGAAACCTGAAAACAT	0.493			NA											9	54					0	0	0.004482	0	0
TCERG1L	256536	broad.mit.edu	37	10	133058582	133058582	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:133058582G>T	uc001lkp.2	-	4	882	c.796C>A	c.(796-798)CCG>ACG	p.P266T	TCERG1L_uc009yax.1_RNA	NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	266										large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		AAGTGGCGCGGCTGCACGCTG	0.562			NA											4	16					1.23904e-05	2.08566e-05	0.000602	1	0
LOC653544	653544	broad.mit.edu	37	10	135491108	135491108	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:135491108C>T	uc010qvi.1	+	1	830	c.719C>T	c.(718-720)GCC>GTC	p.A240V		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCGTGGGTCGCCTTCGCCCAC	0.776			NA											4	21					0	0	0.000248	0	0
MUC5B	727897	broad.mit.edu	37	11	1272644	1272644	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:1272644C>A	uc009ycr.1	+	52	15626	c.15500C>A	c.(15499-15501)ACC>AAC	p.T5167N	MUC5B_uc001ltb.2_Missense_Mutation_p.T4848N	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4845	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCAGGGACCACCTGGATCCTC	0.632			NA											27	62					2.14196e-07	3.90312e-07	0.007291	1	0
MUC5B	727897	broad.mit.edu	37	11	1272646	1272646	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:1272646T>C	uc009ycr.1	+	52	15628	c.15502T>C	c.(15502-15504)TGG>CGG	p.W5168R	MUC5B_uc001ltb.2_Missense_Mutation_p.W4849R	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4846	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGGGACCACCTGGATCCTCAC	0.632			NA											27	64					0	0	0.007291	0	0
HBB	3043	broad.mit.edu	37	11	5248282	5248282	+	Translation_Start_Site	SNP	G	G	T	rs63750628		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:5248282G>T	uc001mae.1	-	1	20	c.-30C>A	c.(-32--28)AACTG>AAATG			NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin						blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	AGTGAACACAGTTGTGTCAGA	0.537			NA							Sickle_Cell_Trait		OREG0003733	type=REGULATORY REGION|Gene=HBB|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	29					1.06961e-07	1.98692e-07	0.00308	1	0
TPP1	1200	broad.mit.edu	37	11	6637657	6637657	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:6637657T>C	uc001mel.1	-	8	1025	c.964A>G	c.(964-966)ACT>GCT	p.T322A	TPP1_uc001mek.1_Missense_Mutation_p.T79A	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	322					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		TAGCTCACAGTATGCACATGT	0.542			NA											12	29					0	0	0.000978	0	0
DCHS1	8642	broad.mit.edu	37	11	6662431	6662431	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:6662431G>T	uc001mem.1	-	2	824	c.414C>A	c.(412-414)GAC>GAA	p.D138E		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	138	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGGAGCATGGTCGTTGATGT	0.602			NA											12	21					6.40141e-05	0.000104091	0.000978	1	0
NELL1	4745	broad.mit.edu	37	11	20948922	20948922	+	Silent	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:20948922T>C	uc001mqe.2	+	8	981	c.828T>C	c.(826-828)AGT>AGC	p.S276S	NELL1_uc001mqf.2_Silent_p.S276S|NELL1_uc009yid.2_Silent_p.S304S|NELL1_uc010rdo.1_Silent_p.S219S|NELL1_uc010rdp.1_Silent_p.S36S	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	276	VWFC 1.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GTCAAGTGAGTGGACTGCTCT	0.383			NA											9	40					0	0	0.006214	0	0
LUZP2	338645	broad.mit.edu	37	11	24759796	24759796	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:24759796T>C	uc001mqs.2	+	4	515	c.281T>C	c.(280-282)CTG>CCG	p.L94P	LUZP2_uc009yif.2_Missense_Mutation_p.L8P|LUZP2_uc009yig.2_Missense_Mutation_p.L94P	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	94	Potential.					extracellular region				ovary(1)|skin(1)	2						CAGGAGGCCCTGCAAAATCAG	0.363			NA											18	38					0	0	0.008871	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137252	40137252	+	Silent	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:40137252G>C	uc001mxa.1	-	2	2555	c.591C>G	c.(589-591)TCC>TCG	p.S197S	LRRC4C_uc001mxc.1_Silent_p.S193S|LRRC4C_uc001mxd.1_Silent_p.S193S|LRRC4C_uc001mxb.1_Silent_p.S193S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	197					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				ACCTCAAGTTGGACAGACCTT	0.428			NA											8	54					0	0	0.004482	0	0
TTC17	55761	broad.mit.edu	37	11	43436154	43436154	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:43436154G>A	uc001mxi.2	+	16	2093	c.2079G>A	c.(2077-2079)TTG>TTA	p.L693L	TTC17_uc001mxh.2_Silent_p.L693L|TTC17_uc010rfj.1_Silent_p.L636L|TTC17_uc001mxj.2_Silent_p.L463L	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	693	TPR 3.						binding			ovary(5)	5						TGACCTTTTTGAGCCTGGGAA	0.393			NA											28	166					0	0	0.008361	0	0
RAPSN	5913	broad.mit.edu	37	11	47464332	47464332	+	Missense_Mutation	SNP	G	G	A	rs121909257		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:47464332G>A	uc001nfi.1	-	3	780	c.566C>T	c.(565-567)GCG>GTG	p.A189V	RAPSN_uc001nfj.1_Missense_Mutation_p.A189V|RAPSN_uc009yls.1_Missense_Mutation_p.A189V	NM_005055	NP_005046	Q13702	RAPSN_HUMAN	43 kD receptor-associated protein of the synapse	189	TPR 4.		A -> V (in FADS).		synaptic transmission, cholinergic	cell junction|cytoskeleton|postsynaptic membrane	acetylcholine receptor binding|zinc ion binding			ovary(1)	1						AAGCTCTGCCGCCTTGCAGGG	0.607			NA											23	68					0	0	0.00333	0	0
OR4C12	283093	broad.mit.edu	37	11	50003113	50003113	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:50003113C>A	uc010ria.1	-	1	925	c.925G>T	c.(925-927)GAT>TAT	p.D309Y		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CTTATTTAATCATTATCTGAA	0.378			NA											16	50					3.57192e-18	8.65099e-18	0.006122	1	0
OR4C46	119749	broad.mit.edu	37	11	51515616	51515616	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:51515616T>A	uc010ric.1	+	1	335	c.335T>A	c.(334-336)CTA>CAA	p.L112Q		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GAGGGCATCCTACTTACTGTG	0.473			NA											51	148					0	0	0.00361	0	0
OR4P4	81300	broad.mit.edu	37	11	55406518	55406518	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:55406518G>A	uc010rij.1	+	1	685	c.685G>A	c.(685-687)GAG>AAG	p.E229K		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ATACTCTGCAGAGAGACGCAG	0.388			NA											55	28					0	0	0.00361	0	0
OR8J3	81168	broad.mit.edu	37	11	55904484	55904484	+	Silent	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:55904484G>T	uc010riz.1	-	1	711	c.711C>A	c.(709-711)GCC>GCA	p.A237A		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					AGGTGGAAAAGGCTTTTTTCC	0.388			NA											41	122					3.61848e-18	8.72692e-18	0.007835	1	0
OR8J3	81168	broad.mit.edu	37	11	55904892	55904892	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:55904892C>A	uc010riz.1	-	1	303	c.303G>T	c.(301-303)CTG>CTT	p.L101L		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					AGAACCCTCCCAGTTGGGTGG	0.438			NA											62	108					5.08636e-23	1.32708e-22	0.00361	1	0
OR5M3	219482	broad.mit.edu	37	11	56237227	56237227	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:56237227G>T	uc010rjk.1	-	1	747	c.747C>A	c.(745-747)TTC>TTA	p.F249L		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GAGTACCATAGAATATAATGA	0.488			NA											15	41					2.31682e-05	3.85466e-05	0.003163	1	0
INCENP	3619	broad.mit.edu	37	11	61913164	61913164	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:61913164G>T	uc001nsw.1	+	14	2102	c.1900G>T	c.(1900-1902)GAG>TAG	p.E634*	INCENP_uc009ynw.1_Nonsense_Mutation_p.E634*|INCENP_uc001nsx.1_Nonsense_Mutation_p.E630*|INCENP_uc001nsy.1_Nonsense_Mutation_p.E44*	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	634	Potential.				chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						GAAGATGGAGGAGGTGGAAGC	0.652			NA											5	10					3.59834e-05	5.86774e-05	0.001168	1	0
PLCB3	5331	broad.mit.edu	37	11	64026145	64026145	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:64026145C>G	uc001nzb.2	+	11	1213	c.1213C>G	c.(1213-1215)CCC>GCC	p.P405A	PLCB3_uc009ypg.1_Missense_Mutation_p.P405A|PLCB3_uc009yph.1_Missense_Mutation_p.P338A|PLCB3_uc009ypi.2_Missense_Mutation_p.P405A	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	405	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						CAAGACCTCGCCCTACCCCGT	0.602			NA											20	73					0	0	0.001523	0	0
SNX32	254122	broad.mit.edu	37	11	65620114	65620114	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:65620114G>A	uc001ofr.2	+	11	1053	c.926G>A	c.(925-927)CGG>CAG	p.R309Q		NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	309	Potential.				cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		CTGCTGTACCGGCGGCTGCGG	0.697			NA											4	12					0	0	0.000248	0	0
DPP3	10072	broad.mit.edu	37	11	66258798	66258798	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:66258798C>A	uc001oig.1	+	7	804	c.742C>A	c.(742-744)CGG>AGG	p.R248R	DPP3_uc001oif.1_Silent_p.R248R|DPP3_uc010rpe.1_Silent_p.R237R	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	248					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						CCAGGTGACCCGGGGGGACTA	0.607			NA									OREG0021109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	89					1.16021e-09	2.24229e-09	0.007291	1	0
B3GNT6	192134	broad.mit.edu	37	11	76750717	76750717	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:76750717G>T	uc001oxw.2	+	2	210	c.122G>T	c.(121-123)AGG>ATG	p.R41M		NM_138706	NP_619651	Q6ZMB0	B3GN6_HUMAN	UDP-GlcNAc:betaGal	41	Lumenal (Potential).				O-glycan processing, core 3	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity|galactosyltransferase activity				0						CGGGAGGAGAGGTCCCCGCAG	0.711			NA									OREG0021252	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	14					7.87624e-14	1.69961e-13	0.00278	1	0
ATM	472	broad.mit.edu	37	11	108218090	108218090	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:108218090T>G	uc001pkb.1	+	59	9054	c.8669T>G	c.(8668-8670)CTA>CGA	p.L2890R	ATM_uc009yxr.1_Missense_Mutation_p.L2890R|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.L1542R	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2890	PI3K/PI4K.		L -> V (in T-prolymphocytic leukemia).		cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding	p.L2890V(2)		haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CATATAGATCTAGGTAAGTAA	0.308			NA	D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			30	39					0	0	0.001786	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110454436	110454436	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:110454436T>G	uc001pkz.1	-	14	1726	c.1441A>C	c.(1441-1443)AAT>CAT	p.N481H	ARHGAP20_uc001pky.1_Missense_Mutation_p.N458H|ARHGAP20_uc009yyb.1_Missense_Mutation_p.N445H|ARHGAP20_uc001pla.1_Missense_Mutation_p.N445H|ARHGAP20_uc001plb.2_Missense_Mutation_p.N24H	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	481	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		AGAACAACATTGGCTCTCGGA	0.383			NA											14	12					0	0	0.00245	0	0
IGSF9B	22997	broad.mit.edu	37	11	133801993	133801993	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr11:133801993C>G	uc001qgx.3	-	8	1314	c.1083G>C	c.(1081-1083)AAG>AAC	p.K361N	IGSF9B_uc001qgy.1_Missense_Mutation_p.K203N	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	361	Extracellular (Potential).|Ig-like 4.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GACGGCCGTCCTTGTTCCACT	0.607			NA											13	12					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	12	8048247	8048247	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:8048247T>G	uc001qtp.1	+	2	235	c.155T>G	c.(154-156)GTA>GGA	p.V52G						RecName: Full=Putative homeobox protein NANOG2;												NA						CAGCTGTGTGTACTCAATGAT	0.458			NA											3	57					0	0	0.004672	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21358830	21358830	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:21358830G>T	uc001req.3	+	11	1464	c.1360G>T	c.(1360-1362)GTA>TTA	p.V454L		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	454	Extracellular (Potential).|Kazal-like.				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TCATAGAGATGTACCACTTTC	0.289			NA											12	114					0.000978159	0.00153405	0.000978	1	0
SOX5	6660	broad.mit.edu	37	12	23757422	23757422	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:23757422C>G	uc001rfw.2	-	9	1165	c.1063G>C	c.(1063-1065)GGG>CGG	p.G355R	SOX5_uc001rfx.2_Missense_Mutation_p.G342R|SOX5_uc001rfy.2_Missense_Mutation_p.G342R|SOX5_uc010siv.1_Missense_Mutation_p.G342R|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.G307R	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	355					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						GGCAGCTTCCCTCCTGGAGAT	0.473			NA											3	103					0	0	0.004672	0	0
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A	rs121913530		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:25398285C>A	uc001rgp.1	-	2	215	c.34G>T	c.(34-36)GGT>TGT	p.G12C	KRAS_uc001rgq.1_Missense_Mutation_p.G12C|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12G(6)|p.G12N(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CCTACGCCACCAGCTCCAACT	0.348	Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)	G12C(UMUC3_URINARY_TRACT)|G12R(CAL62_THYROID)|G12C(CALU1_LUNG)|G12C(NCIH2030_LUNG)|G12C(LU99_LUNG)|G12C(NCIH1792_LUNG)|G12R(KP2_PANCREAS)|G12C(KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(NCIH2122_LUNG)|G12C(NCIH358_LUNG)|G12R(PSN1_PANCREAS)|G12C(KYSE410_OESOPHAGUS)|G12S(A549_LUNG)|G12R(HUPT3_PANCREAS)|G12R(TCCPAN2_PANCREAS)|G12C(HCC44_LUNG)|G12S(KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(SW1463_LARGE_INTESTINE)|G12C(NCIH23_LUNG)|G12C(LU65_LUNG)|G12C(NCIH1373_LUNG)|G12C(MIAPACA2_PANCREAS)|G12R(HS274T_BREAST)|G12S(LS123_LARGE_INTESTINE)|G12C(SW1573_LUNG)|G12C(SW837_LARGE_INTESTINE)|G12C(OV56_OVARY)|G12C(IALM_LUNG)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			13	13					1.3612e-06	2.39672e-06	0.003163	1	0
ADCY6	112	broad.mit.edu	37	12	49177055	49177055	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:49177055G>C	uc001rsh.3	-	1	823	c.163C>G	c.(163-165)CCC>GCC	p.P55A	ADCY6_uc001rsj.3_Missense_Mutation_p.P55A|ADCY6_uc001rsi.3_Missense_Mutation_p.P55A	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	55	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						GCAGGGGTGGGGCTGGGTGGC	0.721			NA											5	21					0	0	0.000602	0	0
LARP4	113251	broad.mit.edu	37	12	50835427	50835427	+	Splice_Site	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:50835427G>T	uc001rwp.1	+	8	948	c.804_splice	c.e8+1	p.M268_splice	LARP4_uc001rwo.1_Splice_Site_p.M274_splice|LARP4_uc001rwq.1_Splice_Site_p.M268_splice|LARP4_uc001rwr.1_Splice_Site_p.M268_splice|LARP4_uc001rws.1_Splice_Site_p.M267_splice|LARP4_uc009zlr.1_Splice_Site_p.M87_splice|LARP4_uc001rwt.1_Splice_Site_p.M1_splice|LARP4_uc001rwm.2_Splice_Site_p.M268_splice|LARP4_uc001rwn.2_Splice_Site_p.M198_splice	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a								nucleotide binding|RNA binding			ovary(1)	1						GCCAATTATGGTAAGAAATAG	0.294			NA											16	78					1.99824e-07	3.65283e-07	0.00499	1	0
CALCOCO1	57658	broad.mit.edu	37	12	54110043	54110043	+	Splice_Site	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:54110043C>T	uc001sef.2	-	8	1149	c.1005_splice	c.e8+1	p.V335_splice	CALCOCO1_uc001see.2_5'Flank|CALCOCO1_uc010som.1_Intron|CALCOCO1_uc010son.1_Splice_Site_p.V212_splice|CALCOCO1_uc001seh.2_Splice_Site_p.V335_splice|CALCOCO1_uc009znd.2_Splice_Site_p.V335_splice|CALCOCO1_uc001seg.2_Intron|CALCOCO1_uc010soo.1_Splice_Site_p.V328_splice	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform						steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						GCCTCACTCACCACCCGCTGC	0.572			NA											20	52					0	0	0.00278	0	0
OR9K2	441639	broad.mit.edu	37	12	55524042	55524042	+	Missense_Mutation	SNP	C	C	G	rs143111490		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:55524042C>G	uc010spe.1	+	1	490	c.490C>G	c.(490-492)CGT>GGT	p.R164G		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	164	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						AATGTCCACACGTCTGTGTAC	0.468			NA											54	122					0	0	0.00361	0	0
NAB2	4665	broad.mit.edu	37	12	57485446	57485446	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:57485446T>C	uc001smz.2	+	2	1000	c.622T>C	c.(622-624)TTC>CTC	p.F208L		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	208					cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CTCGCCCCCCTTCTCCCCCCC	0.716			NA											5	25					0	0	0.001168	0	0
LGR5	8549	broad.mit.edu	37	12	71974057	71974057	+	Splice_Site	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:71974057G>T	uc001swl.2	+	16	1455	c.1407_splice	c.e16-1	p.K469_splice	LGR5_uc001swm.2_Splice_Site_p.K445_splice|LGR5_uc001swn.1_Splice_Site	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled							integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TTCATTTAAAGGGTTATAGAA	0.333			NA											5	202					0.00198382	0.00304468	0.001984	1	0
TRHDE	29953	broad.mit.edu	37	12	73012670	73012670	+	Splice_Site	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:73012670G>T	uc001sxa.2	+	13	2217	c.2187_splice	c.e13-1	p.R729_splice		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme						cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTTAACTGTAGGGCTGGCTAT	0.368			NA											22	76					2.41591e-17	5.75408e-17	0.004656	1	0
LRRIQ1	84125	broad.mit.edu	37	12	85531673	85531673	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:85531673C>A	uc001tac.2	+	19	4366	c.4255C>A	c.(4255-4257)CTA>ATA	p.L1419I		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1419	IQ 3.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GACAACAGCTCTAGAGGCTAT	0.308			NA											45	113					4.01344e-20	1.01934e-19	0.00361	1	0
TDG	6996	broad.mit.edu	37	12	104379502	104379502	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:104379502G>A	uc001tkg.2	+	9	1309	c.1086G>A	c.(1084-1086)GGG>GGA	p.G362G	TDG_uc009zuk.2_Silent_p.G358G|TDG_uc010swi.1_Silent_p.G219G|TDG_uc010swj.1_Silent_p.G150G	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	362					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		CTTCAAATGGGCTAAGTATGG	0.408			NA						BER_DNA_glycosylases					27	84					0	0	0.00632	0	0
RPH3A	22895	broad.mit.edu	37	12	113313513	113313513	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:113313513G>A	uc010syl.1	+	12	1275	c.913G>A	c.(913-915)GGG>AGG	p.G305R	RPH3A_uc001ttz.2_Missense_Mutation_p.G305R|RPH3A_uc001tty.2_Missense_Mutation_p.G301R|RPH3A_uc009zwe.1_Missense_Mutation_p.G301R|RPH3A_uc010sym.1_Missense_Mutation_p.G256R|RPH3A_uc001tua.2_Missense_Mutation_p.G65R	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	305	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		ACCGGGTCCTGGGCCAGCAGG	0.597			NA											24	59					0	0	0.005443	0	0
RBM19	9904	broad.mit.edu	37	12	114374917	114374917	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:114374917C>A	uc009zwi.2	-	16	2107	c.1963G>T	c.(1963-1965)GAG>TAG	p.E655*	RBM19_uc001tvn.3_Nonsense_Mutation_p.E655*|RBM19_uc001tvm.2_Nonsense_Mutation_p.E655*	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	655	RRM 4.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GGAGCCCACTCCAGATAGAGG	0.547			NA											15	70					2.61681e-11	5.27036e-11	0.00245	1	0
NCOR2	9612	broad.mit.edu	37	12	124826522	124826522	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr12:124826522G>A	uc010tba.1	-	34	5176	c.5059C>T	c.(5059-5061)CTG>TTG	p.L1687L	NCOR2_uc010tay.1_Silent_p.L1686L|NCOR2_uc010taz.1_Silent_p.L1670L|NCOR2_uc010tbb.1_Silent_p.L1679L|NCOR2_uc010tbc.1_Silent_p.L1669L|NCOR2_uc010tax.1_5'Flank	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1687					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CGGTTCTCCAGCGCCGCCGTG	0.657			NA											26	72					0	0	0.005443	0	0
RNF17	56163	broad.mit.edu	37	13	25399823	25399823	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:25399823G>C	uc001upr.2	+	16	2199	c.2158G>C	c.(2158-2160)GAA>CAA	p.E720Q	RNF17_uc010tdd.1_Missense_Mutation_p.E579Q|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E720Q|RNF17_uc001ups.2_Missense_Mutation_p.E659Q	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	720					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TGAAGATGGAGAAAATCTGGA	0.363			NA											15	78					0	0	0.00245	0	0
POSTN	10631	broad.mit.edu	37	13	38164532	38164532	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:38164532C>G	uc001uwo.3	-	4	536	c.418G>C	c.(418-420)GAG>CAG	p.E140Q	POSTN_uc001uwp.3_Missense_Mutation_p.E140Q|POSTN_uc001uwr.2_Missense_Mutation_p.E140Q|POSTN_uc001uwq.2_Missense_Mutation_p.E140Q|POSTN_uc010teu.1_Missense_Mutation_p.E140Q|POSTN_uc010tev.1_Missense_Mutation_p.E140Q|POSTN_uc010tew.1_Missense_Mutation_p.E140Q|POSTN_uc010tex.1_Missense_Mutation_p.E55Q	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	140	FAS1 1.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TCCCAAGCCTCATTACTCGGT	0.388			NA											2	6					0	0	0.004672	0	0
TRPC4	7223	broad.mit.edu	37	13	38357466	38357466	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:38357466G>T	uc001uws.2	-	2	240	c.5C>A	c.(4-6)GCT>GAT	p.A2D	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.A2D|TRPC4_uc010tey.1_Missense_Mutation_p.A2D|TRPC4_uc010abw.2_Missense_Mutation_p.A2D|TRPC4_uc010abx.2_Missense_Mutation_p.A2D|TRPC4_uc010aby.2_Missense_Mutation_p.A2D	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	2	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		ATAGAACTGAGCCATGTTTCA	0.358			NA											13	53					0.00010058	0.000162171	0.001368	1	0
CCDC122	160857	broad.mit.edu	37	13	44443475	44443475	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:44443475G>A	uc010acf.2	-	3	297	c.38C>T	c.(37-39)CCT>CTT	p.P13L	CCDC122_uc010tfn.1_Missense_Mutation_p.P13L	NM_144974	NP_659411	Q5T0U0	CC122_HUMAN	coiled-coil domain containing 122	13											0		Lung NSC(96;7.5e-06)|Breast(139;0.00765)|Hepatocellular(98;0.00826)|Prostate(109;0.0143)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000767)|BRCA - Breast invasive adenocarcinoma(63;0.128)		ACCTTCTTTAGGAAATCCTTG	0.313			NA											6	68					0	0	0.001168	0	0
KLHL1	57626	broad.mit.edu	37	13	70293636	70293636	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:70293636C>G	uc001vip.2	-	9	2674	c.1880G>C	c.(1879-1881)TGG>TCG	p.W627S	KLHL1_uc010thm.1_Missense_Mutation_p.W566S	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	627	Kelch 4.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		ACACATGTTCCACTTATTTGT	0.433			NA											9	72					0	0	0.006214	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453902	84453902	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:84453902G>T	uc001vlk.2	-	1	2627	c.1741C>A	c.(1741-1743)CTG>ATG	p.L581M		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	581	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CTAGCGTACAGCTGAGGGCAG	0.542			NA											9	17					3.09899e-07	5.5588e-07	0.004482	1	0
SLITRK5	26050	broad.mit.edu	37	13	88330080	88330080	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:88330080C>A	uc001vln.2	+	2	2656	c.2437C>A	c.(2437-2439)CTG>ATG	p.L813M	SLITRK5_uc010tic.1_Missense_Mutation_p.L572M	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	813	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					cccgccgcagctgcagctgca	0.423			NA											6	5					0.00198382	0.00304468	0.001984	1	0
SLC15A1	6564	broad.mit.edu	37	13	99337125	99337125	+	Silent	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:99337125A>G	uc001vno.2	-	23	2057	c.1980T>C	c.(1978-1980)TGT>TGC	p.C660C		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	660	Helical; (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	CAAAAATTACACAGACGACCA	0.413			NA											3	21					0	0	0.004672	0	0
OR4N2	390429	broad.mit.edu	37	14	20295950	20295950	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:20295950C>T	uc010tkv.1	+	1	343	c.343C>T	c.(343-345)CTT>TTT	p.L115F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGGATTACTCCTTGTTGTGAT	0.507			NA											84	318					0	0	0.00361	0	0
METTL3	56339	broad.mit.edu	37	14	21971722	21971722	+	Splice_Site	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:21971722T>C	uc001wbc.2	-	3	411	c.319_splice	c.e3-1	p.P107_splice	METTL3_uc001wbb.2_5'UTR|METTL3_uc010tlw.1_Splice_Site|METTL3_uc010tlx.1_Splice_Site_p.P107_splice|METTL3_uc001wbd.1_Intron	NM_019852	NP_062826	Q86U44	MTA70_HUMAN	methyltransferase like 3						gene expression	nuclear speck	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity|RNA binding			pancreas(1)|skin(1)	2	all_cancers(95;0.000628)		Epithelial(56;6.61e-06)	GBM - Glioblastoma multiforme(265;0.0146)		AGCATCTGGCTAGAGAACGAG	0.483			NA											3	93					0	0	0.000248	0	0
RNF31	55072	broad.mit.edu	37	14	24619313	24619313	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:24619313C>T	uc001wmn.1	+	7	1102	c.853C>T	c.(853-855)CTG>TTG	p.L285L	RNF31_uc001wml.1_Silent_p.L134L|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Silent_p.L100L|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	285	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		GACCTCCCTGCTGGCCCTGGG	0.582			NA											19	76					0	0	0.001882	0	0
CTSG	1511	broad.mit.edu	37	14	25044579	25044579	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:25044579C>A	uc001wpq.2	-	2	132	c.95G>T	c.(94-96)CGC>CTC	p.R32L		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	32	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		CATGTAGGGGCGGGAGTGGGG	0.567			NA											39	117					2.59497e-14	5.66355e-14	0.007835	1	0
HECTD1	25831	broad.mit.edu	37	14	31626111	31626111	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:31626111T>C	uc001wrc.1	-	12	2356	c.1867A>G	c.(1867-1869)AAA>GAA	p.K623E	HECTD1_uc001wrd.1_Missense_Mutation_p.K138E	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	623					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		GTTGACACTTTGCTAATTACA	0.408			NA											11	87					0	0	0.001368	0	0
ADCK1	57143	broad.mit.edu	37	14	78399674	78399674	+	Silent	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:78399674G>T	uc001xui.2	+	11	1611	c.1512G>T	c.(1510-1512)GGG>GGT	p.G504G	ADCK1_uc001xuj.2_Silent_p.G436G|ADCK1_uc001xul.2_Silent_p.G211G	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	511						extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		GTGTGAAGGGGTTGAAGCTGG	0.527			NA											40	87					5.44703e-19	1.34189e-18	0.002222	1	0
NRXN3	9369	broad.mit.edu	37	14	80164043	80164043	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:80164043C>A	uc001xun.2	+	15	3059	c.2568C>A	c.(2566-2568)TTC>TTA	p.F856L	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Missense_Mutation_p.F224L|NRXN3_uc010asw.2_Missense_Mutation_p.F254L|NRXN3_uc001xur.3_Missense_Mutation_p.F224L	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1229	Extracellular (Potential).|Laminin G-like 6.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GACGCCTCTTCCAAGGCCAAC	0.473			NA											23	67					1.64293e-13	3.49275e-13	0.00333	1	0
RPS6KA5	9252	broad.mit.edu	37	14	91356896	91356896	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:91356896G>A	uc001xys.2	-	14	1986	c.1771C>T	c.(1771-1773)CCA>TCA	p.P591S	RPS6KA5_uc010twi.1_Missense_Mutation_p.P512S	NM_004755	NP_004746	O75582	KS6A5_HUMAN	ribosomal protein S6 kinase, polypeptide 5	591	Protein kinase 2.				axon guidance|epidermal growth factor receptor signaling pathway|histone phosphorylation|innate immune response|interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1		all_cancers(154;0.0148)|Melanoma(154;0.099)|all_epithelial(191;0.146)		Epithelial(152;0.182)|BRCA - Breast invasive adenocarcinoma(234;0.201)		AAGAGCTCTGGGGCGGCATAA	0.448			NA											8	47					0	0	0.006214	0	0
RTL1	388015	broad.mit.edu	37	14	101348403	101348403	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr14:101348403C>A	uc010txj.1	-	1	2782	c.2723G>T	c.(2722-2724)CGC>CTC	p.R908L	uc001yig.3_5'Flank|MIR127_hsa-mir-127|MI0000472_5'Flank|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	908										pancreas(1)	1						GGAGATGTTGCGGGAGTAGAA	0.572			NA											4	7					0.00024832	0.000393745	0.000248	1	0
C15orf2	23742	broad.mit.edu	37	15	24921606	24921606	+	Missense_Mutation	SNP	G	G	T	rs150016698		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr15:24921606G>T	uc001ywo.2	+	1	1066	c.592G>T	c.(592-594)GTG>TTG	p.V198L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	198					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCAGGGAGACGTGGCCTCCTT	0.597			NA											6	18					3.59834e-05	5.86774e-05	0.001168	1	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938316	30938316	+	Splice_Site	SNP	G	G	A	rs112615235	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr15:30938316G>A	uc010azv.1	+	11		c.1127_splice	c.e11-1		ARHGAP11B_uc001zeu.2_Splice_Site			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		TTCCTTGGCAGTGGATAAGTT	0.393			NA											4	29					0	0	0.000248	0	0
CILP	8483	broad.mit.edu	37	15	65499179	65499179	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr15:65499179C>G	uc002aon.2	-	4	546	c.365G>C	c.(364-366)AGG>ACG	p.R122T		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	122					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CCGCTGCTCCCTGTTGAGGCA	0.642			NA											15	26					0	0	0.00245	0	0
C15orf59	388135	broad.mit.edu	37	15	74032550	74032550	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr15:74032550A>G	uc002avy.2	-	2	935	c.590T>C	c.(589-591)CTG>CCG	p.L197P		NM_001039614	NP_001034703	Q2T9L4	CO059_HUMAN	hypothetical protein LOC388135	197										pancreas(1)	1						gtcACAGCACAGAGCATGGTA	0.498			NA											9	25					0	0	0.006214	0	0
AGBL1	123624	broad.mit.edu	37	15	86813215	86813215	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr15:86813215T>C	uc002blz.1	+	13	1846	c.1766T>C	c.(1765-1767)TTC>TCC	p.F589S	AGBL1_uc002bma.1_Missense_Mutation_p.F320S|AGBL1_uc002bmb.1_Missense_Mutation_p.F283S	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	589					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TGGTTCTATTTCAAAGTGAGC	0.493			NA											15	14					0	0	0.00245	0	0
LUC7L	55692	broad.mit.edu	37	16	239997	239997	+	Missense_Mutation	SNP	C	C	A	rs146490197		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:239997C>A	uc002cgc.1	-	9	1055	c.944G>T	c.(943-945)CGG>CTG	p.R315L	LUC7L_uc002cga.1_Missense_Mutation_p.R315L|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_Missense_Mutation_p.R315L|LUC7L_uc002cgb.1_Missense_Mutation_p.R229L	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	315	Arg/Ser-rich.						metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				CCGGGAAGCCCGACGATGTCC	0.617			NA											29	128					1.06801e-11	2.18163e-11	0.001786	1	0
PTX4	390667	broad.mit.edu	37	16	1537689	1537689	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:1537689C>A	uc010uvf.1	-	2	409	c.409G>T	c.(409-411)GCA>TCA	p.A137S		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	142						extracellular region	metal ion binding				0						GCCTTGTGTGCCTTCCTTTCC	0.711			NA											3	28					0.004672	0.00711334	0.004672	1	0
DCI	1632	broad.mit.edu	37	16	2296886	2296886	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:2296886T>A	uc002cpr.2	-	3	304	c.268A>T	c.(268-270)AGC>TGC	p.S90C	DCI_uc002cps.2_Missense_Mutation_p.S90C	NM_001919	NP_001910	P42126	ECI1_HUMAN	dodecenoyl-Coenzyme A delta isomerase precursor	90					fatty acid beta-oxidation	mitochondrial matrix	dodecenoyl-CoA delta-isomerase activity				0						CCGCGGAAGCTCTTGTCATTC	0.562			NA											5	59					0	0	0.000602	0	0
MMP25	64386	broad.mit.edu	37	16	3107056	3107056	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:3107056T>G	uc002cth.2	+	5	921	c.684T>G	c.(682-684)TTT>TTG	p.F228L	uc002ctj.1_Intron	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	228					inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						CCGACCTGTTTGCCGTGGCTG	0.672	NSCLC(147;665 1067 3888 6863 19894 30469 40247 45633 51336)		NA											13	69					0	0	0.001855	0	0
GRIN2A	2903	broad.mit.edu	37	16	9934526	9934526	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:9934526G>A	uc002czo.3	-	7	2177	c.1629C>T	c.(1627-1629)ACC>ACT	p.T543T	GRIN2A_uc010uym.1_Silent_p.T543T|GRIN2A_uc010uyn.1_Silent_p.T386T|GRIN2A_uc002czr.3_Silent_p.T543T	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	543	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAGGTGAGACGGTGCCATTAC	0.453			NA											10	58					0	0	0.008291	0	0
PDILT	204474	broad.mit.edu	37	16	20410442	20410442	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:20410442G>T	uc002dhc.1	-	2	404	c.181C>A	c.(181-183)CGC>AGC	p.R61S		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	61					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						ATGAGGAAGCGGGTCTGGTTC	0.562			NA											17	41					4.7546e-09	9.09714e-09	0.004007	1	0
THUMPD1	55623	broad.mit.edu	37	16	20748497	20748497	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:20748497T>G	uc002dho.2	-	4	905	c.767A>C	c.(766-768)TAC>TCC	p.Y256S	THUMPD1_uc010vaz.1_Missense_Mutation_p.Y109S|THUMPD1_uc002dhp.2_Missense_Mutation_p.Y256S	NM_017736	NP_060206	Q9NXG2	THUM1_HUMAN	THUMP domain containing 1	256											0						AAACAACATGTAATCTTTCAC	0.418			NA											15	91					0	0	0.006122	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147079	26147079	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:26147079C>A	uc002dof.2	+	2	1273	c.881C>A	c.(880-882)GCC>GAC	p.A294D		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	294	Lumenal (Potential).|PAPS and substrate (By similarity).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GTGACCAGGGCCATCTCTGAC	0.532			NA											30	127					3.1745e-13	6.69912e-13	0.008361	1	0
AHSP	51327	broad.mit.edu	37	16	31539817	31539817	+	Silent	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:31539817G>C	uc002ecj.2	+	3	199	c.114G>C	c.(112-114)GTG>GTC	p.V38V		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	38					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						AAGACATGGTGACTGTGGTGG	0.547			NA											19	85					0	0	0.007413	0	0
ADCY7	113	broad.mit.edu	37	16	50349373	50349373	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:50349373T>C	uc002egd.1	+	25	3468	c.3200T>C	c.(3199-3201)GTC>GCC	p.V1067A		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	1067	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	ACTTACTTTGTCTGTACGGAC	0.582			NA											6	96					0	0	0.001984	0	0
GNAO1	2775	broad.mit.edu	37	16	56374870	56374870	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:56374870C>A	uc002eit.3	+	7	1745	c.848C>A	c.(847-849)CCG>CAG	p.P283Q	GNAO1_uc002eiu.3_Intron	NM_138736	NP_620073	P09471	GNAO_HUMAN	guanine nucleotide binding protein, alpha	283					dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|muscle contraction	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			lung(1)|breast(1)	2		all_neural(199;0.159)				AAGAAGTCCCCGCTCACCATC	0.517			NA											60	372					1.40621e-15	3.20304e-15	0.00361	1	0
ZFP90	146198	broad.mit.edu	37	16	68598006	68598006	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:68598006A>T	uc010cff.2	+	5	1608	c.1316A>T	c.(1315-1317)CAA>CTA	p.Q439L	ZFP90_uc002ewb.2_3'UTR|ZFP90_uc002ewc.2_3'UTR|ZFP90_uc002ewd.2_Missense_Mutation_p.Q439L|ZFP90_uc002ewe.2_Missense_Mutation_p.Q439L	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	439					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		TCTCTCACTCAAGATGAAAGC	0.408			NA											6	95					0	0	0.001984	0	0
ZFHX3	463	broad.mit.edu	37	16	72984794	72984794	+	Silent	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:72984794C>G	uc002fck.2	-	3	3463	c.2790G>C	c.(2788-2790)CTG>CTC	p.L930L	ZFHX3_uc002fcl.2_Silent_p.L16L	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	930					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				AGCTCTCGCCCAGGTTCATCA	0.622			NA											22	55					0	0	0.00278	0	0
CXCL16	58191	broad.mit.edu	37	17	4642104	4642104	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:4642104G>A	uc002fyr.3	-	2	780	c.248C>T	c.(247-249)GCT>GTT	p.A83V	CXCL16_uc002fyq.3_5'Flank|CXCL16_uc002fys.3_Missense_Mutation_p.A83V|ZMYND15_uc002fyv.2_5'Flank|ZMYND15_uc002fyt.2_5'Flank|ZMYND15_uc002fyu.2_5'Flank	NM_022059	NP_071342	Q9H2A7	CXL16_HUMAN	chemokine (C-X-C motif) ligand 16	64	Extracellular (Potential).|Chemokine.				lymphocyte chemotaxis|positive regulation of cell growth|positive regulation of cell migration|receptor-mediated endocytosis|response to interferon-gamma|response to tumor necrosis factor	extracellular space|integral to membrane|plasma membrane	chemokine activity|low-density lipoprotein receptor activity|scavenger receptor activity				0						CCGATGGTAAGCTCTCAGGTG	0.552			NA											10	39					0	0	0.008291	0	0
KIAA0753	9851	broad.mit.edu	37	17	6526310	6526310	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:6526310C>A	uc002gde.3	-	6	1355	c.996G>T	c.(994-996)CGG>CGT	p.R332R	KIAA0753_uc010vtd.1_5'Flank|KIAA0753_uc010clo.2_Silent_p.R33R|KIAA0753_uc010vte.1_Silent_p.R33R	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	332						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		GTTCCTTACACCGAGCAGGAA	0.512			NA											16	32					1.15088e-07	2.12413e-07	0.004007	1	0
TRAF4	9618	broad.mit.edu	37	17	27076266	27076266	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:27076266C>G	uc002hcs.2	+	7	1192	c.1084C>G	c.(1084-1086)CAC>GAC	p.H362D	TRAF4_uc002hcq.1_Intron	NM_004295	NP_004286	Q9BUZ4	TRAF4_HUMAN	TNF receptor-associated factor 4	362	MATH.				apoptosis|positive regulation of JNK cascade|positive regulation of protein homodimerization activity|positive regulation of protein kinase activity|regulation of apoptosis|signal transduction	cytoskeleton|nucleus|perinuclear region of cytoplasm|tight junction	DNA binding|ubiquitin-protein ligase activity|WW domain binding|zinc ion binding			upper_aerodigestive_tract(1)|lung(1)	2	Lung NSC(42;0.01)		Epithelial(11;3.26e-05)|all cancers(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.235)			TGAGGGCACACACCTCTCACT	0.542			NA											3	72					0	0	0.000248	0	0
TIAF1	9220	broad.mit.edu	37	17	27401083	27401083	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:27401083C>T	uc002hdv.1	-	1	1545	c.135G>A	c.(133-135)GAG>GAA	p.E45E	MYO18A_uc010wbc.1_3'UTR|MYO18A_uc002hds.2_3'UTR|MYO18A_uc010csa.1_3'UTR|MYO18A_uc002hdt.1_3'UTR|MYO18A_uc002hdu.1_3'UTR	NM_004740	NP_004731	O95411	TIAF1_HUMAN	TGFB1-induced anti-apoptotic factor 1	45					anti-apoptosis|apoptosis|I-kappaB kinase/NF-kappaB cascade	nucleus					0	Lung NSC(42;0.015)		Epithelial(11;1.19e-05)|all cancers(11;6.57e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000153)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CGTAGGCTTGCTCAACCCAGC	0.587			NA											17	60					0	0	0.004007	0	0
NF1	4763	broad.mit.edu	37	17	29663769	29663769	+	Silent	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:29663769G>C	uc002hgg.2	+	42	6597	c.6264G>C	c.(6262-6264)CTG>CTC	p.L2088L	NF1_uc002hgh.2_Silent_p.L2067L|NF1_uc010cso.2_Silent_p.L276L|NF1_uc010wbt.1_5'Flank|NF1_uc010wbu.1_5'Flank	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2088			L -> P (in FSNF; null mutation; 50% reduction of protein level; no cafe-au- lait macules).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TGCTGATGCTGTCCTTCAACA	0.433			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			25	120					0	0	0.004656	0	0
MYO19	80179	broad.mit.edu	37	17	34864956	34864956	+	Silent	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:34864956T>C	uc010wcy.1	-	15	2168	c.1176A>G	c.(1174-1176)GTA>GTG	p.V392V	MYO19_uc002hmw.2_Silent_p.V392V|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	392	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TGATCACTGATACCAGCCAGT	0.532			NA											7	19					0	0	0.004482	0	0
HOXB2	3212	broad.mit.edu	37	17	46620496	46620496	+	Silent	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:46620496A>G	uc002inm.2	-	2	1125	c.1005T>C	c.(1003-1005)CCT>CCC	p.P335P		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	335					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCTCGGAAAAAGGGACCGGGC	0.587			NA											3	95					0	0	0.000248	0	0
CACNA1G	8913	broad.mit.edu	37	17	48680482	48680482	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:48680482C>T	uc002irk.1	+	21	4463	c.4091C>T	c.(4090-4092)TCC>TTC	p.S1364F	CACNA1G_uc002iri.1_Missense_Mutation_p.S1364F|CACNA1G_uc002irj.1_Missense_Mutation_p.S1341F|CACNA1G_uc002irl.1_Missense_Mutation_p.S1341F|CACNA1G_uc002irm.1_Missense_Mutation_p.S1341F|CACNA1G_uc002irn.1_Missense_Mutation_p.S1341F|CACNA1G_uc002iro.1_Missense_Mutation_p.S1341F|CACNA1G_uc002irp.1_Missense_Mutation_p.S1364F|CACNA1G_uc002irq.1_Missense_Mutation_p.S1341F|CACNA1G_uc002irr.1_Missense_Mutation_p.S1364F|CACNA1G_uc002irs.1_Missense_Mutation_p.S1364F|CACNA1G_uc002irt.1_Missense_Mutation_p.S1364F|CACNA1G_uc002irv.1_Missense_Mutation_p.S1364F|CACNA1G_uc002irw.1_Missense_Mutation_p.S1341F|CACNA1G_uc002iru.1_Missense_Mutation_p.S1341F|CACNA1G_uc002irx.1_Missense_Mutation_p.S1277F|CACNA1G_uc002iry.1_Missense_Mutation_p.S1277F|CACNA1G_uc002irz.1_Missense_Mutation_p.S1277F|CACNA1G_uc002isa.1_Missense_Mutation_p.S1277F|CACNA1G_uc002isb.1_Missense_Mutation_p.S1277F|CACNA1G_uc002isc.1_Missense_Mutation_p.S1277F|CACNA1G_uc002isd.1_Missense_Mutation_p.S1277F|CACNA1G_uc002ise.1_Missense_Mutation_p.S1277F|CACNA1G_uc002isf.1_Missense_Mutation_p.S1277F|CACNA1G_uc002isg.1_Missense_Mutation_p.S1277F|CACNA1G_uc002ish.1_Missense_Mutation_p.S1277F|CACNA1G_uc002isi.1_Missense_Mutation_p.S1254F|CACNA1G_uc002isj.2_Missense_Mutation_p.S88F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1364	III.|Helical; Name=S3 of repeat III; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ATTCTGGTGTCCATGGTCTCT	0.652			NA											14	62					0	0	0.00245	0	0
CD79B	974	broad.mit.edu	37	17	62006601	62006601	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:62006601G>T	uc002jdq.1	-	6	758	c.675C>A	c.(673-675)CAC>CAA	p.H225Q	CD79B_uc002jdo.1_Missense_Mutation_p.H199Q|CD79B_uc002jdp.1_Missense_Mutation_p.H226Q|CD79B_uc002jdr.1_Missense_Mutation_p.H121Q	NM_000626	NP_000617	P40259	CD79B_HUMAN	CD79B antigen isoform 1 precursor	225	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|immune response	Golgi apparatus|integral to plasma membrane|nucleus	transmembrane receptor activity				0						CCTGGCCTGGGTGCTCACCTA	0.612			NA	Mis|O		DLBCL								26	56					2.48779e-11	5.02815e-11	0.005443	1	0
ABCA9	10350	broad.mit.edu	37	17	66982325	66982325	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:66982325G>A	uc002jhu.2	-	32	4331	c.4188C>T	c.(4186-4188)GAC>GAT	p.D1396D	ABCA9_uc010dez.2_Silent_p.D1358D	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1396	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					CGATCATTGCGTCCCCTTTCC	0.562			NA											15	85					0	0	0.003163	0	0
DNAI2	64446	broad.mit.edu	37	17	72310295	72310295	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:72310295G>T	uc002jkf.2	+	13	1857	c.1758G>T	c.(1756-1758)GAG>GAT	p.E586D	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA|DNAI2_uc002jki.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	586					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						aggtggtggaggagggagagg	0.383			NA							Kartagener_syndrome				8	35					0.000157383	0.000252341	0.00308	1	0
CDR2L	30850	broad.mit.edu	37	17	72999924	72999924	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:72999924G>C	uc002jml.3	+	5	1565	c.1153G>C	c.(1153-1155)GGC>CGC	p.G385R		NM_014603	NP_055418	Q86X02	CDR2L_HUMAN	cerebellar degeneration-related protein 2-like	385											0	all_lung(278;0.226)					GCGGCACGCCGGCGTGCAGAC	0.697			NA											5	1					0	0	0.000602	0	0
PIAS2	9063	broad.mit.edu	37	18	44424712	44424712	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr18:44424712G>A	uc002lck.2	-	7	1110	c.952C>T	c.(952-954)CAT>TAT	p.H318Y	PIAS2_uc010dnp.2_Missense_Mutation_p.H16Y|PIAS2_uc002lcl.2_Missense_Mutation_p.H318Y|PIAS2_uc010xda.1_Missense_Mutation_p.H16Y|PIAS2_uc002lcm.2_Missense_Mutation_p.H318Y|PIAS2_uc002lcn.1_Missense_Mutation_p.H322Y	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	318					androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						GCTCTGGAATGATCAGGGTTT	0.294			NA											6	65					0	0	0.001168	0	0
SERPINB13	5275	broad.mit.edu	37	18	61260167	61260167	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr18:61260167G>T	uc002ljc.2	+	5	602	c.434G>T	c.(433-435)CGA>CTA	p.R145L	SERPINB13_uc002ljd.2_5'UTR|SERPINB13_uc010xep.1_Missense_Mutation_p.R154L|SERPINB13_uc010xeq.1_Intron|SERPINB13_uc010xer.1_Intron	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	145					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						GATGAAAGTCGAAAGAAGATT	0.323			NA											15	72					6.31663e-08	1.18102e-07	0.003163	1	0
SERPINB4	6318	broad.mit.edu	37	18	61305167	61305167	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr18:61305167C>T	uc002ljf.2	-	8	1045	c.959G>A	c.(958-960)AGC>AAC	p.S320N	SERPINB4_uc002lje.2_Missense_Mutation_p.S299N|SERPINB4_uc002ljg.2_Missense_Mutation_p.S320N	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	320					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						GAGACCGTGGCTCCAGGTCAT	0.507			NA											10	65					0	0	0.000978	0	0
STK11	6794	broad.mit.edu	37	19	1220410	1220410	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:1220410A>G	uc002lrl.1	+	4	1618	c.503A>G	c.(502-504)CAT>CGT	p.H168R		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11	168	Protein kinase.				anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.Y156fs*87(4)|p.?(4)|p.G52_P179del(1)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGTACCTGCATAGCCAGGGC	0.647			14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			3	5					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	8996403	8996403	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:8996403C>A	uc002mkp.2	-	61	41373	c.41169G>T	c.(41167-41169)CTG>CTT	p.L13723L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.L540L|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13725	Extracellular (Potential).|SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTCCCAATACAGCTGCTCTC	0.572			NA											28	106					1.77063e-15	4.00135e-15	0.005443	1	0
MUC16	94025	broad.mit.edu	37	19	9070212	9070212	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:9070212G>T	uc002mkp.2	-	3	17438	c.17234C>A	c.(17233-17235)GCC>GAC	p.A5745D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5747	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAGATGTGGCTTTGGATGT	0.473			NA											9	100					1.33834e-09	2.57787e-09	0.007413	1	0
MUC16	94025	broad.mit.edu	37	19	9090058	9090058	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:9090058G>T	uc002mkp.2	-	1	1961	c.1757C>A	c.(1756-1758)TCT>TAT	p.S586Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	586	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGTCTGCAGATGTTTCTTC	0.542			NA											14	20					9.31168e-06	1.58602e-05	0.001855	1	0
ZNF177	7730	broad.mit.edu	37	19	9490795	9490795	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:9490795A>T	uc002mli.2	+	11	979	c.316A>T	c.(316-318)ACA>TCA	p.T106S	ZNF177_uc002mlj.2_5'UTR|ZNF177_uc002mlk.2_Missense_Mutation_p.T106S	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	106					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGGGGGAAAAACATCCAATGG	0.373			NA											7	25					0	0	0.006214	0	0
ABHD8	79575	broad.mit.edu	37	19	17405099	17405099	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:17405099C>A	uc002ngb.3	-	4	1387	c.1147G>T	c.(1147-1149)GAG>TAG	p.E383*		NM_024527	NP_078803	Q96I13	ABHD8_HUMAN	abhydrolase domain containing 8	383							hydrolase activity				0						GCCTCTACCTCGGCCATGCGC	0.692	Ovarian(156;1368 2543 15275 41187)		NA											5	27					3.59834e-05	5.86774e-05	0.001168	1	0
ZNF676	163223	broad.mit.edu	37	19	22362761	22362761	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:22362761C>A	uc002nqs.1	-	3	2076	c.1758G>T	c.(1756-1758)GAG>GAT	p.E586D		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	586					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TTTAGGGATTCTCTCCAGTAT	0.343			NA											10	38					4.68919e-08	8.85393e-08	0.008291	1	0
ZNF99	7652	broad.mit.edu	37	19	22939511	22939511	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:22939511G>T	uc010xrh.1	-	7	2660	c.2660C>A	c.(2659-2661)CCG>CAG	p.P887Q		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACATTTGTACGGTTTCTCCCC	0.353			NA											12	59					2.27111e-07	4.11236e-07	0.001368	1	0
ZNF91	7644	broad.mit.edu	37	19	23557440	23557440	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:23557440C>A	uc002nre.2	-	2	270	c.157G>T	c.(157-159)GGT>TGT	p.G53C	ZNF91_uc010xrj.1_Missense_Mutation_p.G53C	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	53	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TTTTCCTTACCCAGGAAGGCC	0.284			NA											12	98					7.03913e-09	1.34235e-08	0.001368	1	0
ZNF536	9745	broad.mit.edu	37	19	30934718	30934718	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:30934718C>A	uc002nsu.1	+	2	387	c.249C>A	c.(247-249)CTC>CTA	p.L83L	ZNF536_uc010edd.1_Silent_p.L83L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	83					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGATGGCGCTCCTGGCCAACC	0.672			NA											7	17					0.00198382	0.00304468	0.001984	1	0
TSHZ3	57616	broad.mit.edu	37	19	31768669	31768669	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:31768669C>A	uc002nsy.3	-	2	2095	c.2030G>T	c.(2029-2031)GGG>GTG	p.G677V		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	677					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					ATCCTTGCACCCATCCCGCGG	0.647			NA											10	46					1.33987e-11	2.72725e-11	0.008291	1	0
FFAR3	2865	broad.mit.edu	37	19	35850660	35850660	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:35850660C>A	uc002nzd.2	+	2	943	c.868C>A	c.(868-870)CTG>ATG	p.L290M	FFAR3_uc010xsu.1_Intron	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	290	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			CTTTCATGAGCTGCTGAGGAG	0.602	Esophageal Squamous(185;1742 2042 21963 24215 27871)		NA											6	32					2.17888e-05	3.64628e-05	0.006214	1	0
CYP2A7	1549	broad.mit.edu	37	19	41383145	41383145	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:41383145C>A	uc002opm.2	-	7	1653	c.1111G>T	c.(1111-1113)GCC>TCC	p.A371S	CYP2A7_uc002opo.2_Missense_Mutation_p.A371S|CYP2A7_uc002opn.2_Missense_Mutation_p.A320S	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	371						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			ACCCTGCGGGCCAAACTCATG	0.547			NA											20	49					4.96729e-08	9.31773e-08	0.008871	1	0
PSG1	5669	broad.mit.edu	37	19	43382204	43382204	+	Silent	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:43382204T>A	uc002ovb.2	-	2	429	c.291A>T	c.(289-291)GGA>GGT	p.G97G	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.G97G|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.G97G|PSG1_uc010eio.1_Silent_p.G97G|PSG1_uc002oux.1_Silent_p.G26G|PSG1_uc002ouy.1_Silent_p.G97G|PSG1_uc002ouz.1_Silent_p.G97G|PSG1_uc002ova.1_Silent_p.G97G|PSG1_uc002ovc.2_Silent_p.G97G|PSG1_uc002ovd.1_Silent_p.G97G	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	97	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CTGTTTCTCGTCCACTATATG	0.448			NA											76	445					0	0	0.00361	0	0
ZNF114	163071	broad.mit.edu	37	19	48789178	48789178	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:48789178C>A	uc002pil.1	+	6	794	c.297C>A	c.(295-297)CAC>CAA	p.H99Q	ZNF114_uc010elv.1_Missense_Mutation_p.H99Q|ZNF114_uc002pim.1_Missense_Mutation_p.H99Q|ZNF114_uc002pin.2_Missense_Mutation_p.H65Q	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	99					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		AGGAACCACACAGGCAGGGGG	0.478			NA											15	50					0.000566183	0.000895287	0.00499	1	0
NLRP12	91662	broad.mit.edu	37	19	54314284	54314284	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:54314284G>C	uc002qch.3	-	3	849	c.629C>G	c.(628-630)CCG>CGG	p.P210R	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.P210R|NLRP12_uc002qcj.3_Missense_Mutation_p.P210R|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.P210R	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	210					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CACGGTGCGCGGTGGCTCGGG	0.647			NA											21	62					0	0	0.001882	0	0
LILRB2	10288	broad.mit.edu	37	19	54782199	54782199	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:54782199C>A	uc002qfb.2	-	7	1439	c.1173G>T	c.(1171-1173)GCG>GCT	p.A391A	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.A391A|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.A391A|LILRB2_uc010yet.1_Silent_p.A275A|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	391	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGTAGGTCCCCGCGTGGGCTG	0.602			NA											36	141					3.76114e-14	8.14676e-14	0.004289	1	0
C19orf51	352909	broad.mit.edu	37	19	55672123	55672123	+	Silent	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:55672123T>C	uc002qji.1	-	9	967	c.933A>G	c.(931-933)CAA>CAG	p.Q311Q	C19orf51_uc002qjh.1_Silent_p.Q126Q|C19orf51_uc002qjj.1_Silent_p.Q358Q|C19orf51_uc002qjk.1_Silent_p.Q257Q|C19orf51_uc002qjl.1_Silent_p.Q379Q			Q8N9W5	CS051_HUMAN	RecName: Full=UPF0470 protein C19orf51;	311											0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		TCACGTTGTGTTGAGTGATCT	0.711			NA											3	33					0	0	0.004672	0	0
ZNF835	90485	broad.mit.edu	37	19	57175225	57175225	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:57175225A>T	uc010ygo.1	-	2	1408	c.1408T>A	c.(1408-1410)TGC>AGC	p.C470S	ZNF835_uc010ygn.1_Missense_Mutation_p.C448S	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CACTCGGGGCAGGTGTAGGGC	0.677			NA											39	47					0	0	0.004878	0	0
ZNF135	7694	broad.mit.edu	37	19	58574842	58574842	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:58574842C>A	uc010yhq.1	+	4	285	c.189C>A	c.(187-189)ATC>ATA	p.I63I	ZNF135_uc002qre.2_Silent_p.I63I|ZNF135_uc002qrd.1_Silent_p.I21I|ZNF135_uc002qrf.2_Silent_p.I21I|ZNF135_uc002qrg.2_Silent_p.I21I|ZNF135_uc010yhr.1_5'UTR	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	63					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		CGAATGTCATCTCCCTGCTGG	0.587			NA											23	38					2.48779e-11	5.02815e-11	0.005443	1	0
TPO	7173	broad.mit.edu	37	2	1497701	1497701	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:1497701C>G	uc002qww.2	+	11	1987	c.1896C>G	c.(1894-1896)ATC>ATG	p.I632M	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.I575M|TPO_uc002qwr.2_Missense_Mutation_p.I632M|TPO_uc002qwx.2_Missense_Mutation_p.I575M|TPO_uc010yio.1_Missense_Mutation_p.I459M|TPO_uc010yip.1_Missense_Mutation_p.I632M|TPO_uc002qwy.1_Translation_Start_Site|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	632	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CTGACAACATCGATGTCTGGC	0.612			NA											27	34					0	0	0.005443	0	0
APOB	338	broad.mit.edu	37	2	21226018	21226018	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:21226018G>T	uc002red.2	-	29	12404	c.12276C>A	c.(12274-12276)CAC>CAA	p.H4092Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4092					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGAGCCCTGTGTGTTCCCAGT	0.473			NA											36	219					3.11337e-16	7.29419e-16	0.002836	1	0
EHD3	30845	broad.mit.edu	37	2	31489306	31489306	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:31489306C>T	uc002rnu.2	+	6	1952	c.1344C>T	c.(1342-1344)TAC>TAT	p.Y448Y	EHD3_uc010ymt.1_3'UTR	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	448	EH.				blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					AGCCCATGTACGACGAGATCT	0.602			NA											4	32					0	0	0.000248	0	0
DHX57	90957	broad.mit.edu	37	2	39088243	39088243	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:39088243C>A	uc002rrf.2	-	5	1408	c.1309G>T	c.(1309-1311)GTG>TTG	p.V437L	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Missense_Mutation_p.V437L	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	437							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				AGAAAGTTCACAGGAGGGTCA	0.383	Melanoma(191;1090 2095 4375 23729 47341)		NA											46	90					2.81731e-22	7.21935e-22	0.00361	1	0
ABCG5	64240	broad.mit.edu	37	2	44051104	44051104	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:44051104G>T	uc002rtn.2	-	9	1412	c.1272C>A	c.(1270-1272)TAC>TAA	p.Y424*	ABCG5_uc002rtm.2_Nonsense_Mutation_p.Y29*|ABCG5_uc002rto.2_Nonsense_Mutation_p.Y253*|ABCG5_uc002rtp.2_Nonsense_Mutation_p.Y29*	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	424	Helical; Name=2; (Potential).|ABC transmembrane type-2.				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CCACAAACTGGTAAAGGAGAC	0.527			NA											22	37					2.98393e-07	5.38609e-07	0.00278	1	0
MSH2	4436	broad.mit.edu	37	2	47690292	47690292	+	Silent	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:47690292T>C	uc002rvy.1	+	9	1577	c.1509T>C	c.(1507-1509)CTT>CTC	p.L503L	MSH2_uc010yoh.1_Silent_p.L437L|MSH2_uc002rvz.2_Silent_p.L503L|MSH2_uc010fbg.2_Silent_p.L313L|MSH2_uc010fbh.1_RNA|MSH2_uc010fbi.1_RNA	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	503					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(2)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CCAGAGATCTTGGTAAGAATG	0.338			NA	D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				23	81					0	0	0.005443	0	0
C2orf86	51057	broad.mit.edu	37	2	63380691	63380691	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:63380691C>G	uc002sch.2	-	16	2543	c.2097G>C	c.(2095-2097)AGG>AGC	p.R699S	C2orf86_uc002sce.2_RNA|C2orf86_uc002scf.2_Missense_Mutation_p.R540S|C2orf86_uc010ypu.1_RNA|C2orf86_uc002scg.2_Missense_Mutation_p.R507S	NM_015910	NP_056994	O95876	FRITZ_HUMAN	hypothetical protein LOC51057 isoform 2	699					cilium morphogenesis|regulation of embryonic cell shape|regulation of protein localization|septin cytoskeleton organization	cilium axoneme|cytoplasm|cytoskeleton|plasma membrane					0						CAAGTTCATTCCTTCTGTCAA	0.294			NA											27	47					0	0	0.002836	0	0
APLF	200558	broad.mit.edu	37	2	68765342	68765343	+	Nonsense_Mutation	DNP	TG	TG	AT			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:68765342_68765343TG>AT	uc002sep.2	+	7	1316_1317	c.1143_1144TG>AT	c.(1141-1146)TATGGG>TAATGG	p.381_382YG>*W	APLF_uc002seq.1_RNA|APLF_uc010fdf.2_Nonsense_Mutation_p.357_358YG>*W|APLF_uc002ser.1_Nonsense_Mutation_p.112_113YG>*W	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	381_382	PBZ-type 1.				double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						CCTGCATGTATGGGGCAAACTG	0.371			NA											22	39					0	0	0.004672	0	0
DYSF	8291	broad.mit.edu	37	2	71801487	71801487	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:71801487C>T	uc002sie.2	+	30	3710	c.3334C>T	c.(3334-3336)CTT>TTT	p.L1112F	DYSF_uc010feg.2_Missense_Mutation_p.L1143F|DYSF_uc010feh.2_Missense_Mutation_p.L1098F|DYSF_uc002sig.3_Missense_Mutation_p.L1098F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.L1112F|DYSF_uc010fef.2_Missense_Mutation_p.L1129F|DYSF_uc010fei.2_Missense_Mutation_p.L1129F|DYSF_uc010fek.2_Missense_Mutation_p.L1130F|DYSF_uc010fej.2_Missense_Mutation_p.L1099F|DYSF_uc010fel.2_Missense_Mutation_p.L1099F|DYSF_uc010feo.2_Missense_Mutation_p.L1144F|DYSF_uc010fem.2_Missense_Mutation_p.L1113F|DYSF_uc010fen.2_Missense_Mutation_p.L1130F|DYSF_uc002sif.2_Missense_Mutation_p.L1113F|DYSF_uc010yqy.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1112	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TGTGTTTGCCCTTGAGGGGGC	0.637			NA											19	104					0	0	0.001523	0	0
ALMS1	7840	broad.mit.edu	37	2	73677380	73677380	+	Silent	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:73677380A>T	uc002sje.1	+	10	3840	c.3729A>T	c.(3727-3729)ACA>ACT	p.T1243T	ALMS1_uc002sjf.1_Silent_p.T1199T|ALMS1_uc002sjg.2_Silent_p.T629T|ALMS1_uc002sjh.1_Silent_p.T629T	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1241	15.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACTCACACACAGAGAAGCCTG	0.468			NA											58	110					0	0	0.00361	0	0
REG1B	5968	broad.mit.edu	37	2	79313600	79313600	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:79313600G>T	uc002sny.2	-	4	326	c.214C>A	c.(214-216)CTG>ATG	p.L72M	REG1B_uc010ffv.1_Missense_Mutation_p.L72M|REG1B_uc010ffw.2_3'UTR	NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	72	C-type lectin.				cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						ACAGACACCAGGTTGCCTGAA	0.522			NA											32	94					1.22384e-17	2.93925e-17	0.002836	1	0
SMYD1	150572	broad.mit.edu	37	2	88407897	88407897	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:88407897T>A	uc002ssr.2	+	9	1155	c.1153T>A	c.(1153-1155)TAC>AAC	p.Y385N	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.Y81N	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	385					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CAGGAAGCTCTACCACCCCAA	0.473			NA											5	40					0	0	0.001168	0	0
DPP10	57628	broad.mit.edu	37	2	116525943	116525943	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:116525943G>T	uc002tla.1	+	13	1641	c.1184G>T	c.(1183-1185)CGT>CTT	p.R395L	DPP10_uc002tlb.1_Missense_Mutation_p.R345L|DPP10_uc002tlc.1_Missense_Mutation_p.R391L|DPP10_uc002tle.2_Missense_Mutation_p.R399L|DPP10_uc002tlf.1_Missense_Mutation_p.R388L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	395	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CAAGGGGGACGTGGAGAATTT	0.458			NA											12	93					2.62699e-14	5.71171e-14	0.003163	1	0
CNTNAP5	129684	broad.mit.edu	37	2	125555740	125555740	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:125555740C>A	uc002tno.2	+	19	3421	c.3057C>A	c.(3055-3057)ACC>ACA	p.T1019T	CNTNAP5_uc010flu.2_Silent_p.T1020T	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1019	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		ATCCTGTGACCAAGAATATAA	0.443			NA											16	38					2.23348e-06	3.88491e-06	0.004007	1	0
LCT	3938	broad.mit.edu	37	2	136570154	136570154	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:136570154C>A	uc002tuu.1	-	7	2091	c.2080G>T	c.(2080-2082)GCC>TCC	p.A694S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	694	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TTTTGTGGGGCGTTGCTGATG	0.547			NA											16	66					8.28177e-16	1.90913e-15	0.007413	1	0
GALNT13	114805	broad.mit.edu	37	2	155265538	155265538	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:155265538C>A	uc002tyr.3	+	11	1906	c.1339C>A	c.(1339-1341)CGC>AGC	p.R447S	GALNT13_uc002tyt.3_Missense_Mutation_p.R447S|GALNT13_uc010foc.1_Missense_Mutation_p.R266S|GALNT13_uc010fod.2_Missense_Mutation_p.R200S	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	447	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CAACATGGGCCGCAAGGAAAA	0.368			NA											31	72					1.42033e-22	3.67239e-22	0.004289	1	0
KCNJ3	3760	broad.mit.edu	37	2	155711609	155711609	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:155711609G>T	uc002tyv.1	+	3	1485	c.1290G>T	c.(1288-1290)TTG>TTT	p.L430F	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	430	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CCTACAGCTTGGGAGACTTGC	0.403			NA											28	121					5.61819e-17	1.33258e-16	0.005443	1	0
ABCB11	8647	broad.mit.edu	37	2	169792745	169792745	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:169792745C>G	uc002ueo.1	-	22	2935	c.2809G>C	c.(2809-2811)GGA>CGA	p.G937R	ABCB11_uc010zda.1_Missense_Mutation_p.G379R|ABCB11_uc010zdb.1_Missense_Mutation_p.G413R	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	937	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ATTACCTGTCCCACCATCTCC	0.473			NA											6	37					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179397295	179397295	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:179397295G>T	uc010zfg.1	-	307	96567	c.96343C>A	c.(96343-96345)CTT>ATT	p.L32115I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.L25810I|TTN_uc010zfi.1_Missense_Mutation_p.L25743I|TTN_uc010zfj.1_Missense_Mutation_p.L25618I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33042							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCTTCAAGACGCAGCCTC	0.463			NA											25	167					2.44723e-14	5.36149e-14	0.004656	1	0
TTN	7273	broad.mit.edu	37	2	179482722	179482722	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:179482722C>A	uc010zfg.1	-	202	39876	c.39652G>T	c.(39652-39654)GGA>TGA	p.G13218*	TTN_uc010zfh.1_Nonsense_Mutation_p.G6913*|TTN_uc010zfi.1_Nonsense_Mutation_p.G6846*|TTN_uc010zfj.1_Nonsense_Mutation_p.G6721*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14145							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGCACCTCCATCATACTCT	0.463			NA											12	114					3.07112e-06	5.32574e-06	0.000978	1	0
TTN	7273	broad.mit.edu	37	2	179567381	179567381	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:179567381A>G	uc010zfg.1	-	104	26725	c.26501T>C	c.(26500-26502)ATT>ACT	p.I8834T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.I5495T|TTN_uc010fre.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9761							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTAAACTGAATTGGTTCAGC	0.383			NA											13	65					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179648941	179648942	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:179648941_179648942GG>TT	uc010zfg.1	-	16	2854_2855	c.2630_2631CC>AA	c.(2629-2631)CCC>CAA	p.P877Q	TTN_uc010zfh.1_Missense_Mutation_p.P831Q|TTN_uc010zfi.1_Missense_Mutation_p.P831Q|TTN_uc010zfj.1_Missense_Mutation_p.P831Q|TTN_uc002unb.2_Missense_Mutation_p.P877Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	877							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGTGGCAAGGGTGTGGGCTC	0.525			NA											9	88					0	0	0.004672	0	0
ITGAV	3685	broad.mit.edu	37	2	187529244	187529244	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:187529244G>T	uc002upq.2	+	20	2225	c.1949G>T	c.(1948-1950)GGG>GTG	p.G650V	ITGAV_uc010frs.2_Missense_Mutation_p.G614V|ITGAV_uc010zfv.1_Missense_Mutation_p.G604V	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	650	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		ATCTATATTGGGGATGACAAC	0.403	Melanoma(58;108 1995 6081)		NA											33	215					1.04352e-10	2.07979e-10	0.003755	1	0
DYTN	391475	broad.mit.edu	37	2	207516601	207516601	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:207516601G>A	uc002vbr.1	-	12	1795	c.1678C>T	c.(1678-1680)CGA>TGA	p.R560*		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	560						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		CTGCACACTCGCTGAGCTCCA	0.473			NA											11	63					0	0	0.001368	0	0
CPS1	1373	broad.mit.edu	37	2	211515108	211515108	+	Silent	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:211515108A>T	uc002vee.3	+	28	3558	c.3426A>T	c.(3424-3426)GTA>GTT	p.V1142V	CPS1_uc010fur.2_Silent_p.V1148V|CPS1_uc010fus.2_Silent_p.V691V	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1142	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TGAATGTGGTATTCTCTGAGG	0.398			NA											10	75					0	0	0.008291	0	0
ABCA12	26154	broad.mit.edu	37	2	215798856	215798856	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:215798856G>T	uc002vew.2	-	52	7846	c.7626C>A	c.(7624-7626)AAC>AAA	p.N2542K	ABCA12_uc002vev.2_Missense_Mutation_p.N2224K|ABCA12_uc010zjn.1_Missense_Mutation_p.N1469K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2542					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AAGCAGTCTTGTTGGTTTCCA	0.418	Ovarian(66;664 1488 5121 34295)		NA											19	76					3.32936e-07	5.95343e-07	0.006122	1	0
ABCA12	26154	broad.mit.edu	37	2	215865469	215865469	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:215865469G>T	uc002vew.2	-	22	3359	c.3139C>A	c.(3139-3141)CAG>AAG	p.Q1047K	ABCA12_uc002vev.2_Missense_Mutation_p.Q729K|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1047					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GCTTGAACCTGGACTGCTATT	0.393	Ovarian(66;664 1488 5121 34295)		NA											16	151					4.75885e-15	1.07121e-14	0.00499	1	0
TRPM8	79054	broad.mit.edu	37	2	234916722	234916722	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:234916722A>T	uc002vvh.2	+	24	3279	c.3239A>T	c.(3238-3240)CAT>CTT	p.H1080L	TRPM8_uc010fyj.2_Missense_Mutation_p.H658L|TRPM8_uc010fyk.2_RNA	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	1080	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	AGAATGAGGCATCGATTTAGA	0.338			NA											16	155					0	0	0.004007	0	0
C2orf85	285093	broad.mit.edu	37	2	242815319	242815319	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:242815319G>T	uc010fzu.1	+	2	1635	c.1612G>T	c.(1612-1614)GCC>TCC	p.A538S		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	538						integral to membrane				ovary(1)	1						TAGGCCGCACGCCGAGCCCTA	0.652			NA											25	121					5.45727e-16	1.26821e-15	0.008361	1	0
TGM6	343641	broad.mit.edu	37	20	2413145	2413145	+	Silent	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:2413145C>G	uc002wfy.1	+	13	2038	c.1977C>G	c.(1975-1977)ACC>ACG	p.T659T	TGM6_uc010gal.1_Missense_Mutation_p.P615A	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	659					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GCGTGCCTACCCTGGAGCCTC	0.617			NA											14	47					0	0	0.003163	0	0
SMOX	54498	broad.mit.edu	37	20	4167988	4167988	+	Silent	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:4167988G>C	uc002wkm.1	+	7	1803	c.1602G>C	c.(1600-1602)CTG>CTC	p.L534L	SMOX_uc002wkk.1_Silent_p.L511L|SMOX_uc002wkl.1_Silent_p.L481L|SMOX_uc002wkn.1_Silent_p.L169L|SMOX_uc002wkp.2_Silent_p.L564L|SMOX_uc010zqo.1_Silent_p.L458L|SMOX_uc002wko.1_Silent_p.L534L	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	534					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	GTGCTCTGCTGTCCGGCCAGC	0.637			NA											10	36					0	0	0.000978	0	0
PLCB1	23236	broad.mit.edu	37	20	8722135	8722135	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:8722135C>G	uc002wnb.2	+	23	2441	c.2438C>G	c.(2437-2439)CCA>CGA	p.P813R	PLCB1_uc010zrb.1_Missense_Mutation_p.P712R|PLCB1_uc002wna.2_Missense_Mutation_p.P813R|PLCB1_uc002wnc.1_Missense_Mutation_p.P712R|PLCB1_uc002wnd.1_Missense_Mutation_p.P390R	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	813					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TTATCAAACCCAATCCGATAT	0.338			NA											7	34					0	0	0.001984	0	0
SNAP25	6616	broad.mit.edu	37	20	10286783	10286783	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:10286783T>A	uc002wnq.1	+	8	771	c.559T>A	c.(559-561)TCC>ACC	p.S187T	SNAP25_uc002wnr.1_Missense_Mutation_p.S187T|SNAP25_uc002wns.1_Missense_Mutation_p.S124T|SNAP25_uc010gca.1_Missense_Mutation_p.S187T|SNAP25_uc010gcb.1_Missense_Mutation_p.S124T|SNAP25_uc010gcc.1_Missense_Mutation_p.S81T	NM_130811	NP_570824	P60880	SNP25_HUMAN	synaptosomal-associated protein 25 isoform	187	t-SNARE coiled-coil homology 2.				energy reserve metabolic process|glutamate secretion|neurotransmitter uptake|synaptic vesicle docking involved in exocytosis	cell junction|growth cone|perinuclear region of cytoplasm|synapse|synaptosome				skin(2)	2					Botulinum Toxin Type A(DB00083)	CTAGGCTGATTCCAACAAAAC	0.493			NA											24	57					0	0	0.002299	0	0
SSTR4	6754	broad.mit.edu	37	20	23017003	23017003	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:23017003G>T	uc002wsr.2	+	1	947	c.883G>T	c.(883-885)GTG>TTG	p.V295L		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	295	Helical; Name=7; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CGTCAACCACGTGTCCCTTAT	0.562	Esophageal Squamous(15;850 1104 16640)		NA											51	107					6.3237e-29	1.69617e-28	0.00361	1	0
PTPRT	11122	broad.mit.edu	37	20	40770554	40770554	+	Splice_Site	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:40770554C>A	uc002xkg.2	-	18	2954	c.2770_splice	c.e18+1	p.Y924_splice	PTPRT_uc010ggj.2_Splice_Site_p.Y943_splice|PTPRT_uc010ggi.2_Splice_Site_p.Y127_splice	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T						homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGGGCACCTACAGGATATGAT	0.448			NA											34	137					1.836e-18	4.46553e-18	0.003755	1	0
CDH22	64405	broad.mit.edu	37	20	44815504	44815504	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:44815504G>A	uc002xrm.2	-	8	1907	c.1506C>T	c.(1504-1506)CCC>CCT	p.P502P	CDH22_uc010ghk.1_Silent_p.P502P	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	502	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CTGCCTCGTAGGGTGTGGCCA	0.592			NA											22	110					0	0	0.00333	0	0
TUBB1	81027	broad.mit.edu	37	20	57599371	57599371	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:57599371C>A	uc002yak.2	+	4	1158	c.889C>A	c.(889-891)CGC>AGC	p.R297S		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	297					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	GTTCGATGCCCGCAATACCAT	0.627			NA											6	33					5.9392e-07	1.05873e-06	0.001168	1	0
ZNF831	128611	broad.mit.edu	37	20	57768614	57768614	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:57768614C>A	uc002yan.2	+	1	2540	c.2540C>A	c.(2539-2541)CCC>CAC	p.P847H		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	847						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCAGGTGGGCCCACGCAGCCT	0.642			NA											15	26					1.52009e-12	3.14994e-12	0.003163	1	0
PHACTR3	116154	broad.mit.edu	37	20	58349509	58349509	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:58349509C>A	uc002yau.2	+	7	1605	c.1138C>A	c.(1138-1140)CAG>AAG	p.Q380K	PHACTR3_uc002yat.2_Missense_Mutation_p.Q377K|PHACTR3_uc010zzw.1_Missense_Mutation_p.Q339K|PHACTR3_uc002yav.2_Missense_Mutation_p.Q339K|PHACTR3_uc002yaw.2_Missense_Mutation_p.Q339K|PHACTR3_uc002yax.2_Missense_Mutation_p.Q269K	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	380						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			GCTTTTGTATCAGGACGAGGA	0.507			NA											25	94					1.17739e-12	2.44864e-12	0.005443	1	0
MYT1	4661	broad.mit.edu	37	20	62839282	62839282	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr20:62839282A>G	uc002yii.2	+	7	1097	c.733A>G	c.(733-735)AGT>GGT	p.S245G	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	245	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GGATGCAGCCAGTGAGGAGTC	0.423	GBM(59;481 1041 20555 21139 33705)		NA											3	14					0	0	0.004672	0	0
LIPI	149998	broad.mit.edu	37	21	15561682	15561682	+	Silent	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr21:15561682A>G	uc002yjm.2	-	2	178	c.168T>C	c.(166-168)GAT>GAC	p.D56D	LIPI_uc010gkw.1_5'UTR	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	35					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GAATAAATAAATCTCTGAAGG	0.353			NA											39	59					0	0	0.005524	0	0
PCNT	5116	broad.mit.edu	37	21	47783483	47783483	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr21:47783483A>T	uc002zji.3	+	14	2350	c.2243A>T	c.(2242-2244)AAA>ATA	p.K748I	PCNT_uc002zjj.2_Missense_Mutation_p.K630I	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	748	Glu-rich.|Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TTCCAAAGAAAAGAAACGGAC	0.408			NA											20	67					0	0	0.007413	0	0
POTEH	23784	broad.mit.edu	37	22	16279214	16279214	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr22:16279214C>A	uc010gqp.2	-	4	1061	c.1009G>T	c.(1009-1011)GCA>TCA	p.A337S	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Missense_Mutation_p.A56S|POTEH_uc002zlj.1_Missense_Mutation_p.A172S	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	337	ANK 5.									skin(1)	1						CTATCCAGTGCATTTAAATTT	0.313			NA											29	550					9.39395e-14	2.00451e-13	0.00632	1	0
POTEH	23784	broad.mit.edu	37	22	16287480	16287480	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr22:16287480C>A	uc010gqp.2	-	1	458	c.406G>T	c.(406-408)GGC>TGC	p.G136C	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_Intron	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	136										skin(1)	1						CACCACTTGCCCATCTTGCTC	0.617			NA											71	476					9.47431e-33	2.55317e-32	0.00361	1	0
CECR1	51816	broad.mit.edu	37	22	17662792	17662792	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr22:17662792C>A	uc002zmk.1	-	8	1572	c.1360G>T	c.(1360-1362)GAT>TAT	p.D454Y	CECR1_uc010gqu.1_Missense_Mutation_p.D454Y|CECR1_uc011agi.1_Missense_Mutation_p.D412Y|CECR1_uc002zmj.1_Missense_Mutation_p.D213Y	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	454					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				TCATAGAAATCATAGGACAAG	0.532			NA											18	48					1.56452e-12	3.23035e-12	0.007413	1	0
CABIN1	23523	broad.mit.edu	37	22	24487629	24487629	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr22:24487629G>T	uc002zzi.1	+	24	3745	c.3618G>T	c.(3616-3618)TGG>TGT	p.W1206C	CABIN1_uc002zzj.1_Missense_Mutation_p.W1156C|CABIN1_uc002zzl.1_Missense_Mutation_p.W1206C	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1206					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AGGAGGAGTGGCTCATCCACT	0.602			NA											13	56					1.61879e-10	3.18215e-10	0.001368	1	0
SF3A1	10291	broad.mit.edu	37	22	30735151	30735151	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr22:30735151C>A	uc003ahl.2	-	10	1597	c.1465G>T	c.(1465-1467)GGT>TGT	p.G489C		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	489					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						TCCTCCTCACCGATCTTCTTA	0.512			NA											45	104					2.215e-12	4.55703e-12	0.002852	1	0
CACNA1I	8911	broad.mit.edu	37	22	40066959	40066959	+	Silent	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr22:40066959G>C	uc003ayc.2	+	26	4539	c.4539G>C	c.(4537-4539)ACG>ACC	p.T1513T	CACNA1I_uc003ayd.2_Silent_p.T1478T|CACNA1I_uc003aye.2_Silent_p.T1428T|CACNA1I_uc003ayf.2_Silent_p.T1393T	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1513	Extracellular (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	ATCAGCCCACGGTGAGCCCTG	0.587			NA											11	34					0	0	0.008291	0	0
ATP2B2	491	broad.mit.edu	37	3	10387773	10387773	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:10387773G>A	uc003bvt.2	-	17	2892	c.2453C>T	c.(2452-2454)ACG>ATG	p.T818M	ATP2B2_uc003bvv.2_Missense_Mutation_p.T773M|ATP2B2_uc003bvw.2_Missense_Mutation_p.T773M|ATP2B2_uc010hdo.2_Missense_Mutation_p.T523M	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	818	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CCCGTCCCCCGTCACGGCCAC	0.687	Ovarian(125;1619 1709 15675 19819 38835)		NA											4	25					0	0	0.000602	0	0
LSM3	27258	broad.mit.edu	37	3	14220343	14220343	+	Translation_Start_Site	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:14220343G>T	uc003byn.2	+	1	12	c.-17G>T	c.(-19--15)AAGGG>AATGG		XPC_uc011ave.1_5'Flank|XPC_uc011avf.1_5'Flank|XPC_uc011avg.1_5'Flank	NM_014463	NP_055278	P62310	LSM3_HUMAN	Lsm3 protein						exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	catalytic step 2 spliceosome|cytosol	protein binding|RNA binding			ovary(1)	1						AGGCGGGAAAGGGCGCAGGGT	0.502			NA											11	46					1.61879e-10	3.18215e-10	0.001368	1	0
TOP2B	7155	broad.mit.edu	37	3	25654005	25654005	+	Splice_Site	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:25654005C>A	uc003cdj.2	-	28	3771	c.3771_splice	c.e28+1	p.K1257_splice	TOP2B_uc011awm.1_Splice_Site_p.K114_splice|TOP2B_uc010hff.1_Splice_Site_p.K123_splice	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme						DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GTATGTCATACCTTCTTCTTC	0.318			NA											26	103					7.26314e-15	1.6222e-14	0.007291	1	0
ZNF621	285268	broad.mit.edu	37	3	40573561	40573561	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:40573561G>T	uc003ckm.2	+	5	516	c.300G>T	c.(298-300)AAG>AAT	p.K100N	ZNF621_uc003ckn.2_Missense_Mutation_p.K100N|ZNF621_uc003cko.2_Missense_Mutation_p.K65N|ZNF621_uc011aze.1_Missense_Mutation_p.K92N	NM_001098414	NP_001091884	Q6ZSS3	ZN621_HUMAN	zinc finger protein 621	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0515)|Kidney(284;0.0648)		TAGTTATAAAGCAGGAAGCCT	0.433			NA											23	72					1.10513e-12	2.30671e-12	0.002299	1	0
COL7A1	1294	broad.mit.edu	37	3	48603991	48603991	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:48603991C>A	uc003ctz.2	-	112	8311	c.8310G>T	c.(8308-8310)CGG>CGT	p.R2770R	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2770	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CAGGCCCTGGCCGCCCCTATG	0.468			NA											13	74					2.31682e-05	3.85466e-05	0.003163	1	0
DUSP7	1849	broad.mit.edu	37	3	52088145	52088145	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:52088145C>A	uc003dct.2	-	2	842	c.763G>T	c.(763-765)GGC>TGC	p.G255C	DUSP7_uc010hma.2_Missense_Mutation_p.G255C	NM_001947	NP_001938	Q16829	DUS7_HUMAN	dual specificity phosphatase 7	255					inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein binding|protein tyrosine phosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;5.14e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TTGGCGCAGCCGAGGTAGAGG	0.612			NA											22	113					9.95505e-16	2.28568e-15	0.002299	1	0
CACNA2D3	55799	broad.mit.edu	37	3	54603989	54603989	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:54603989A>T	uc003dhf.2	+	8	794	c.746A>T	c.(745-747)CAG>CTG	p.Q249L	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.Q155L|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_5'UTR	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	249	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGGTACATCCAGGCAGCAACT	0.423			NA											12	65					0	0	0.001368	0	0
OR5H6	79295	broad.mit.edu	37	3	97983970	97983970	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:97983970C>T	uc003dsi.1	+	1	842	c.842C>T	c.(841-843)CCG>CTG	p.P281L		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	281	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TCTGCATCTCCGCAAGCAGAT	0.423			NA											18	60					0	0	0.006122	0	0
MYH15	22989	broad.mit.edu	37	3	108107873	108107873	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:108107873C>A	uc003dxa.1	-	39	5596	c.5539G>T	c.(5539-5541)GAG>TAG	p.E1847*		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1847	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTCTGGGCCTCTGCACTGCGA	0.562			NA											42	110					3.77016e-25	9.97268e-25	0.003214	1	0
BOC	91653	broad.mit.edu	37	3	112969439	112969439	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:112969439C>T	uc003dzx.2	+	4	756	c.135C>T	c.(133-135)ACC>ACT	p.T45T	BOC_uc010hqi.2_Silent_p.T45T|BOC_uc003dzy.2_Silent_p.T45T|BOC_uc003dzz.2_Silent_p.T45T|BOC_uc003dzw.1_Silent_p.T45T|BOC_uc003eaa.1_Silent_p.T45T	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	45	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			CTGCGTCCACCGTCCAGAAGC	0.562			NA											8	59					0	0	0.00308	0	0
PLCH1	23007	broad.mit.edu	37	3	155199127	155199127	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:155199127G>T	uc011bok.1	-	23	4989	c.4712C>A	c.(4711-4713)CCC>CAC	p.P1571H	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.P1533H	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1571					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CAGTGCCCGGGGGAGCTGATT	0.512			NA											26	75					6.32553e-13	1.32998e-12	0.004656	1	0
SI	6476	broad.mit.edu	37	3	164710112	164710112	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:164710112C>A	uc003fei.2	-	42	4977	c.4915G>T	c.(4915-4917)GTA>TTA	p.V1639L		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1639	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGTTCCAGTACTGGGGTAACC	0.328			NA								HNSCC(35;0.089)			28	63					7.41945e-09	1.41019e-08	0.005443	1	0
PRKCI	5584	broad.mit.edu	37	3	169953139	169953139	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:169953139G>T	uc003fgs.2	+	2	461	c.223G>T	c.(223-225)GGA>TGA	p.G75*		NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	75	Interaction with PARD6A.|Regulatory domain.|OPR.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AGATGAGGAAGGTGAGTGGTA	0.388			NA											16	47					2.48551e-13	5.2645e-13	0.00499	1	0
GHSR	2693	broad.mit.edu	37	3	172165766	172165766	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:172165766G>A	uc003fib.1	-	1	438	c.438C>T	c.(436-438)TGC>TGT	p.C146C	GHSR_uc011bpv.1_Silent_p.C146C	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	146	Cytoplasmic (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			GGAGTGGGAAGCAGATGGCGA	0.622	Esophageal Squamous(93;641 1401 20883 29581 34638)		NA											3	26					0	0	0.004672	0	0
MFN1	55669	broad.mit.edu	37	3	179069732	179069732	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:179069732G>T	uc003fjs.2	+	3	283	c.157G>T	c.(157-159)GAT>TAT	p.D53Y	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.D81Y	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	53	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			CACTGAAGATGATCTGGTAGA	0.353			NA											30	70					1.99505e-19	4.9574e-19	0.002445	1	0
PCYT1A	5130	broad.mit.edu	37	3	195997349	195997349	+	Silent	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:195997349C>G	uc003fwg.2	-	3	227	c.54G>C	c.(52-54)GCG>GCC	p.A18A	PCYT1A_uc003fwh.2_Silent_p.A18A	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	18						cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	TGGGTCCGGGCGCCTCTTTTC	0.483			NA											94	180					0	0	0.00361	0	0
LDB2	9079	broad.mit.edu	37	4	16900063	16900063	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:16900063G>C	uc003goz.2	-	1	362	c.46C>G	c.(46-48)CCA>GCA	p.P16A	LDB2_uc003gpa.2_Missense_Mutation_p.P16A|LDB2_uc003gpb.2_Missense_Mutation_p.P16A|LDB2_uc011bxh.1_Missense_Mutation_p.P16A|LDB2_uc010iee.2_Missense_Mutation_p.P16A	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	16							LIM domain binding|transcription cofactor activity				0						CTATAAAATGGGCCGAAAGGA	0.453			NA											4	57					0	0	0.000248	0	0
GABRG1	2565	broad.mit.edu	37	4	46099357	46099357	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:46099357C>A	uc003gxb.2	-	2	266	c.114G>T	c.(112-114)AAG>AAT	p.K38N		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	38	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CATCATCTGCCTTATCAACAC	0.323			NA											32	122					1.84765e-07	3.38834e-07	0.003755	1	0
EPHA5	2044	broad.mit.edu	37	4	66356169	66356169	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:66356169G>T	uc003hcy.2	-	5	1521	c.1328C>A	c.(1327-1329)GCA>GAA	p.A443E	EPHA5_uc003hcx.2_Missense_Mutation_p.A374E|EPHA5_uc003hcz.2_Missense_Mutation_p.A443E|EPHA5_uc011cah.1_Missense_Mutation_p.A443E|EPHA5_uc011cai.1_Missense_Mutation_p.A443E|EPHA5_uc003hda.2_Missense_Mutation_p.A443E	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	443	Fibronectin type-III 1.|Extracellular (Potential).				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						TCCATTCACTGCCTCAATCTC	0.502			NA								TSP Lung(17;0.13)			16	64					0.00498961	0.00757681	0.00499	1	0
ADAMTS3	9508	broad.mit.edu	37	4	73149142	73149142	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:73149142C>A	uc003hgk.1	-	22	3366	c.3329G>T	c.(3328-3330)GGA>GTA	p.G1110V		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1110					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ATTTGGACCTCCCACTGAAGA	0.463	NSCLC(168;1941 2048 2918 13048 43078)		NA											15	78					1.15088e-07	2.12413e-07	0.004007	1	0
THAP6	152815	broad.mit.edu	37	4	76452177	76452177	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:76452177G>T	uc003him.2	+	5	519	c.422G>T	c.(421-423)AGC>ATC	p.S141I	THAP6_uc003hin.2_Missense_Mutation_p.S99I|THAP6_uc011cbm.1_Intron|THAP6_uc010iiu.1_Intron|THAP6_uc003hio.1_Intron|THAP6_uc010iiv.2_Missense_Mutation_p.S141I	NM_144721	NP_653322	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	141						microtubule cytoskeleton	DNA binding|metal ion binding				0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TAGGAACATAGCTACAGTGTA	0.343			NA											15	29					2.23348e-06	3.88491e-06	0.004007	1	0
ANKRD56	345079	broad.mit.edu	37	4	77818208	77818208	+	Silent	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:77818208A>G	uc003hki.2	-	1	795	c.795T>C	c.(793-795)GCT>GCC	p.A265A		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	265	Ala-rich.										0						TGCTTGTCGCAGCCTCGACGG	0.721			NA											2	4					0	0	0.004672	0	0
FGF5	2250	broad.mit.edu	37	4	81188269	81188269	+	Silent	SNP	C	C	A	rs148557449		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:81188269C>A	uc003hmd.2	+	1	528	c.291C>A	c.(289-291)ATC>ATA	p.I97I	FGF5_uc003hme.2_Silent_p.I97I	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	97					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity			ovary(1)|breast(1)	2						GAGTGGGCATCGGTTTCCATC	0.567			NA											25	68					1.5548e-18	3.79768e-18	0.005443	1	0
PKD2	5311	broad.mit.edu	37	4	88996742	88996742	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:88996742C>A	uc003hre.2	+	15	2869	c.2803C>A	c.(2803-2805)CTA>ATA	p.L935I	PKD2_uc011cdf.1_Missense_Mutation_p.L353I|PKD2_uc011cdg.1_Missense_Mutation_p.L261I|PKD2_uc011cdh.1_Missense_Mutation_p.L158I	NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	935	C-terminal coiled coil domain.|Cytoplasmic (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		GCCAGTGGGACTAAATGGTCA	0.532			NA											6	149					0.00307968	0.00471396	0.00308	1	0
NHEDC2	133308	broad.mit.edu	37	4	103964603	103964603	+	Splice_Site	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:103964603C>T	uc003hwx.3	-	9	1869	c.997_splice	c.e9-1	p.D333_splice	NHEDC2_uc010iln.1_Splice_Site_p.D185_splice|NHEDC2_uc003hwy.2_Splice_Site_p.D333_splice|NHEDC2_uc011cew.1_Splice_Site_p.D276_splice|NHEDC2_uc011cex.1_Splice_Site_p.D276_splice	NM_178833	NP_849155	Q86UD5	NHDC2_HUMAN	Na+/H+ exchanger domain containing 2						sodium ion transport	integral to membrane|mitochondrial membrane	solute:hydrogen antiporter activity				0				OV - Ovarian serous cystadenocarcinoma(123;2.3e-08)		CAAGTTTGTCCTTTAGGAGAA	0.343			NA											3	19					0	0	0.000248	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951485	119951485	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:119951485A>T	uc003icm.3	+	4	1751	c.1555A>T	c.(1555-1557)AGC>TGC	p.S519C	SYNPO2_uc010ina.2_Missense_Mutation_p.S519C|SYNPO2_uc010inb.2_Missense_Mutation_p.S519C|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.S447C	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	519						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TGGAACGCCAAGCAGAGAACA	0.522			NA											5	33					0	0	0.001168	0	0
QRFPR	84109	broad.mit.edu	37	4	122250567	122250567	+	Silent	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:122250567A>G	uc010inj.1	-	6	1577	c.1198T>C	c.(1198-1200)TTG>CTG	p.L400L	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_3'UTR	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	400	Cytoplasmic (Potential).					plasma membrane	neuropeptide Y receptor activity				0						TGTTCACACAATTTGACTTCA	0.413			NA											41	177					0	0	0.00874	0	0
UCP1	7350	broad.mit.edu	37	4	141483349	141483349	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:141483349C>T	uc011chj.1	-	5	883	c.807G>A	c.(805-807)AAG>AAA	p.K269K	UCP1_uc011chk.1_Silent_p.K268K	NM_021833	NP_068605	P25874	UCP1_HUMAN	uncoupling protein 1	269	Helical; Name=6; (Potential).|Solcar 3.				brown fat cell differentiation|cellular lipid metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	all_hematologic(180;0.162)					TATCTTACCCCTTGAAGAAAG	0.418			NA											18	66					0	0	0.007413	0	0
IL15	3600	broad.mit.edu	37	4	142653921	142653921	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:142653921G>C	uc003iis.2	+	8	778	c.409G>C	c.(409-411)GAG>CAG	p.E137Q	IL15_uc003iit.2_Missense_Mutation_p.E137Q|IL15_uc010iol.2_RNA|IL15_uc003iiu.2_RNA	NM_000585	NP_000576	P40933	IL15_HUMAN	interleukin 15 preproprotein	137					cell-cell signaling|immune response|positive regulation of interleukin-17 production	endosome|extracellular space|Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	cytokine activity|cytokine receptor binding|signal transducer activity				0	all_hematologic(180;0.158)					CAAAGAATGTGAGGAACTGGA	0.284	Pancreas(10;184 986 25902)		NA											45	99					0	0	0.00361	0	0
TDO2	6999	broad.mit.edu	37	4	156831356	156831356	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:156831356T>A	uc003ipf.1	+	6	675	c.611T>A	c.(610-612)TTA>TAA	p.L204*		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	204					tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	CTTCTGGAATTAGTGGAGGTA	0.308	Colon(57;928 1036 2595 6946 26094)		NA											12	67					0	0	0.001368	0	0
NPY5R	4889	broad.mit.edu	37	4	164271731	164271731	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:164271731C>A	uc003iqn.2	+	4	488	c.306C>A	c.(304-306)GTC>GTA	p.V102V		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	102	Extracellular (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				TGACGTCTGTCTTGCTGGATC	0.393	Melanoma(139;1287 1774 9781 19750 25599)		NA											83	169					2.47556e-37	6.73447e-37	0.00361	1	0
MTNR1A	4543	broad.mit.edu	37	4	187455689	187455689	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr4:187455689T>G	uc003izd.1	-	2	225	c.207A>C	c.(205-207)TTA>TTC	p.L69F		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	69	Helical; Name=2; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	CTGCCACCGCTAAGCTCACCA	0.458			NA											12	28					0	0	0.00245	0	0
PRDM9	56979	broad.mit.edu	37	5	23522959	23522959	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:23522959G>T	uc003jgo.2	+	8	1029	c.847G>T	c.(847-849)GAC>TAC	p.D283Y		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	283	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AATTACAGAAGACGAAGAGGC	0.557			NA								HNSCC(3;0.000094)			21	76					1.28384e-07	2.36193e-07	0.001882	1	0
C5orf42	65250	broad.mit.edu	37	5	37183193	37183193	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:37183193A>G	uc011cpa.1	-	26	5321	c.5090T>C	c.(5089-5091)CTA>CCA	p.L1697P	C5orf42_uc011coy.1_Missense_Mutation_p.L198P|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.L772P|C5orf42_uc011cpb.1_Missense_Mutation_p.L578P	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1697										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TCTCTGGATTAGACATTTCTC	0.328			NA											24	54					0	0	0.00278	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41009403	41009403	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:41009403G>C	uc003jmj.3	-	32	3889	c.3399C>G	c.(3397-3399)ATC>ATG	p.I1133M	HEATR7B2_uc003jmi.3_Missense_Mutation_p.I688M	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1133	HEAT 12.						binding			ovary(6)|central_nervous_system(2)	8						CAACCCTGGCGATGTCATCTT	0.507			NA											34	85					0	0	0.002836	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41019088	41019088	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:41019088T>A	uc003jmj.3	-	25	2964	c.2474A>T	c.(2473-2475)CAC>CTC	p.H825L	HEATR7B2_uc003jmi.3_Missense_Mutation_p.H380L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	825							binding			ovary(6)|central_nervous_system(2)	8						AATGTTAAGGTGGTCTTGTAG	0.463			NA											13	30					0	0	0.001855	0	0
ZNF608	57507	broad.mit.edu	37	5	123980214	123980214	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:123980214G>A	uc003ktq.1	-	5	3969	c.3846C>T	c.(3844-3846)CCC>CCT	p.P1282P	ZNF608_uc003ktr.1_RNA|ZNF608_uc003ktp.1_5'UTR	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1282						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		CAGGAAGGCTGGGCACACCAC	0.418			NA											36	203					0	0	0.006999	0	0
ACSL6	23305	broad.mit.edu	37	5	131302125	131302125	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:131302125A>T	uc010jdo.1	-	17	1705	c.1622T>A	c.(1621-1623)ATC>AAC	p.I541N	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.I566N|ACSL6_uc003kvy.1_Missense_Mutation_p.I566N|ACSL6_uc003kwb.2_Missense_Mutation_p.I531N|ACSL6_uc003kvz.1_Missense_Mutation_p.I466N|ACSL6_uc003kwa.1_Missense_Mutation_p.I552N|ACSL6_uc003kvw.1_Missense_Mutation_p.I187N|ACSL6_uc010jdn.1_Missense_Mutation_p.I556N	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	541	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCATTTTCCGATGTCTCCAGT	0.537			NA											20	64					0	0	0.001882	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203112	140203112	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:140203112G>A	uc003lhl.2	+	1	1752	c.1752G>A	c.(1750-1752)GTG>GTA	p.V584V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.V584V|PCDHA5_uc003lhj.1_Silent_p.V584V	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	584	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAGGTCAGTGGGTGCGGGCC	0.682			NA											9	61					0	0	0.004482	0	0
PCDHA9	9752	broad.mit.edu	37	5	140228509	140228509	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:140228509G>A	uc003lhu.2	+	1	1153	c.429G>A	c.(427-429)GCG>GCA	p.A143A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.A143A	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	143	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTCATCGCGGAATCCAGGC	0.552	Melanoma(55;1800 1972 14909)		NA											6	146					0	0	0.001168	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503357	140503357	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:140503357G>T	uc003lip.1	+	1	1777	c.1777G>T	c.(1777-1779)GGC>TGC	p.G593C		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	593	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCGGTGGACGGCGACTCGGG	0.716			NA											28	63					2.2171e-23	5.81103e-23	0.001786	1	0
PCDHB9	56127	broad.mit.edu	37	5	140567370	140567370	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:140567370C>A	uc003liw.1	+	1	478	c.478C>A	c.(478-480)CCA>ACA	p.P160T		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	160	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCACAGGATCCAGATGAAGG	0.388			NA											37	141					9.62906e-15	2.14228e-14	0.00623	1	0
PCDHB13	56123	broad.mit.edu	37	5	140594394	140594394	+	Silent	SNP	C	C	A	rs3822336		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:140594394C>A	uc003lja.1	+	1	886	c.699C>A	c.(697-699)GTC>GTA	p.V233V		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	233	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACATCGAAGTCCTGGATGTCA	0.537			NA											32	149					5.91797e-21	1.50974e-20	0.002445	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140730539	140730539	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:140730539G>A	uc003ljo.1	+	1	712	c.712G>A	c.(712-714)GTG>ATG	p.V238M	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.V238M	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	238	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAATGCTCCCGTGTTTAGCCA	0.557			NA											17	55					0	0	0.004007	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755906	140755906	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:140755906C>A	uc003ljy.1	+	1	2256	c.2256C>A	c.(2254-2256)ACC>ACA	p.T752T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.T752T	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	752	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGCAGACCTATTCCCACG	0.587			NA											11	69					0.000673444	0.00105906	0.008291	1	0
PCDH1	5097	broad.mit.edu	37	5	141248409	141248409	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:141248409C>A	uc003llq.2	-	2	745	c.628G>T	c.(628-630)GGG>TGG	p.G210W	PCDH1_uc003llp.2_Missense_Mutation_p.G210W|PCDH1_uc011dbf.1_Missense_Mutation_p.G188W	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	210	Extracellular (Potential).|Cadherin 2.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		GCCTCAGGCCCAGCCTGCAGC	0.607	Ovarian(132;1609 1739 4190 14731 45037)		NA											13	93					0.00010058	0.000162171	0.001368	1	0
FAT2	2196	broad.mit.edu	37	5	150922135	150922135	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:150922135G>T	uc003lue.3	-	9	8566	c.8553C>A	c.(8551-8553)GAC>GAA	p.D2851E	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2851	Extracellular (Potential).|Cadherin 25.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CACTCTCACTGTCAATGGCAA	0.522			NA											22	61					1.55795e-14	3.43946e-14	0.001882	1	0
NPM1	4869	broad.mit.edu	37	5	170819773	170819773	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:170819773A>G	uc011dex.1	+	6	547	c.412A>G	c.(412-414)ATA>GTA	p.I138V	NPM1_uc003mbh.2_Missense_Mutation_p.I138V|NPM1_uc003mbi.2_Missense_Mutation_p.I138V|NPM1_uc003mbj.2_Missense_Mutation_p.I138V	NM_002520	NP_002511	P06748	NPM_HUMAN	nucleophosmin 1 isoform 1	138	Required for interaction with SENP3.				anti-apoptosis|cell aging|CenH3-containing nucleosome assembly at centromere|centrosome cycle|DNA repair|interspecies interaction between organisms|intracellular protein transport|negative regulation of cell proliferation|negative regulation of centrosome duplication|nucleocytoplasmic transport|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|regulation of endodeoxyribonuclease activity|regulation of endoribonuclease activity|ribosome assembly|signal transduction	nucleolus|nucleoplasm|ribonucleoprotein complex|spindle pole centrosome	histone binding|NF-kappaB binding|protein binding|protein heterodimerization activity|protein homodimerization activity|ribosomal large subunit binding|ribosomal small subunit binding|RNA binding|Tat protein binding|transcription coactivator activity|unfolded protein binding		NPM1/ALK(632)	haematopoietic_and_lymphoid_tissue(3109)|skin(1)	3110	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ACTCTTAAGTATATCTGGAAA	0.393			NA	T|F 	ALK|RARA|MLF1	NHL|APL|AML								31	110					0	0	0.002096	0	0
LMAN2	10960	broad.mit.edu	37	5	176765495	176765495	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:176765495C>A	uc003mge.2	-	3	664	c.427G>T	c.(427-429)GTG>TTG	p.V143L	LMAN2_uc003mgd.2_Missense_Mutation_p.V143L	NM_006816	NP_006807	Q12907	LMAN2_HUMAN	lectin, mannose-binding 2 precursor	143	Lumenal (Potential).|L-type lectin-like.				protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	metal ion binding|sugar binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCACCTGGCACGAGGCGGTCC	0.657			NA											16	67					3.52763e-06	6.09898e-06	0.00499	1	0
TFAP2A	7020	broad.mit.edu	37	6	10415182	10415183	+	Missense_Mutation	DNP	CC	CC	AG			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:10415182_10415183CC>AG	uc003myr.2	-	1	288_289	c.36_37GG>CT	c.(34-39)GAGGAC>GACTAC	p.12_13ED>DY	TFAP2A_uc003myq.2_5'Flank|TFAP2A_uc003mys.2_RNA|TFAP2A_uc011dih.1_Missense_Mutation_p.12_13ED>DY|TFAP2A_uc003myt.2_Intron|TFAP2A_uc003myu.1_Missense_Mutation_p.12_13ED>DY|TFAP2A_uc003myv.1_5'Flank|TFAP2A_uc011dii.1_Intron|uc003myw.2_RNA|uc003myx.2_RNA|uc003myy.1_RNA	NM_003220	NP_003211	P05549	AP2A_HUMAN	transcription factor AP-2 alpha isoform a	12_13					ectoderm development|positive regulation of bone mineralization|positive regulation of tooth mineralization|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	centrosome|Golgi apparatus|nucleus	chromatin binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.0991)	all_hematologic(90;0.107)				ACCTCGCAGTCCTCGTACTTGA	0.569			NA									OREG0017182	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	85					0	0	0.004672	0	0
PPT2	9374	broad.mit.edu	37	6	32130370	32130370	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:32130370G>T	uc003nzx.2	+	8	1304	c.736G>T	c.(736-738)GAG>TAG	p.E246*	PPT2_uc003nzw.2_Nonsense_Mutation_p.E252*|PPT2_uc011dpi.1_RNA|PPT2_uc003nzy.1_RNA|PPT2_uc003nzz.2_Nonsense_Mutation_p.E246*|PPT2_uc003oaa.2_Nonsense_Mutation_p.E246*|PPT2_uc010jtu.1_Nonsense_Mutation_p.E246*|EGFL8_uc003oac.1_5'Flank|EGFL8_uc003oab.1_5'Flank	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	246					protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						TGATGCAAATGAGACCGTCCT	0.443			NA											33	218					1.57351e-24	4.14311e-24	0.003755	1	0
PPARD	5467	broad.mit.edu	37	6	35393636	35393636	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:35393636G>T	uc003okm.2	+	8	1415	c.1106G>T	c.(1105-1107)CGG>CTG	p.R369L	PPARD_uc003okn.2_Missense_Mutation_p.R369L|PPARD_uc011dtb.1_Missense_Mutation_p.R330L|PPARD_uc011dtc.1_Missense_Mutation_p.R271L	NM_006238	NP_006229	Q03181	PPARD_HUMAN	peroxisome proliferative activated receptor,	369	Ligand-binding.				apoptosis|axon ensheathment|cholesterol metabolic process|decidualization|embryo implantation|fatty acid beta-oxidation|fatty acid transport|generation of precursor metabolites and energy|glucose metabolic process|glucose transport|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fat cell differentiation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|linoleic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1					Icosapent(DB00159)|Sulindac(DB00605)|Treprostinil(DB00374)	AACGTTCCACGGGTGGAGGCT	0.622			NA											6	54					3.59834e-05	5.86774e-05	0.001168	1	0
CLPS	1208	broad.mit.edu	37	6	35762936	35762936	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:35762936C>T	uc003ole.1	-	3	363	c.326G>A	c.(325-327)CGC>CAC	p.R109H	CLPS_uc003olf.1_Missense_Mutation_p.R68H	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	109					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						CTGCTTGGAGCGTCCAGCGTC	0.607	Melanoma(167;2962 3494 37796)		NA											5	87					0	0	0.001984	0	0
KIF6	221458	broad.mit.edu	37	6	39580974	39580974	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:39580974C>T	uc003oot.2	-	6	725	c.630G>A	c.(628-630)ATG>ATA	p.M210I	KIF6_uc010jxa.1_Missense_Mutation_p.M1I|KIF6_uc011dua.1_Missense_Mutation_p.M210I|KIF6_uc010jxb.1_Missense_Mutation_p.M210I	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	210	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						CCTCTGCAATCATTCGGTTGG	0.363			NA											9	46					0	0	0.006214	0	0
GFRAL	389400	broad.mit.edu	37	6	55196632	55196632	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:55196632G>T	uc003pcm.1	+	2	228	c.142G>T	c.(142-144)GCC>TCC	p.A48S		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	48	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AATGGAAGATGCCTGCAATGA	0.313			NA											15	18					1.05317e-09	2.0423e-09	0.00245	1	0
COL9A1	1297	broad.mit.edu	37	6	70991127	70991127	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:70991127C>A	uc003pfg.3	-	8	1001	c.842G>T	c.(841-843)GGC>GTC	p.G281V	COL9A1_uc003pfe.3_5'Flank|COL9A1_uc003pff.3_Missense_Mutation_p.G38V	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	281	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCCAGGGGGGCCCGGAGGCCC	0.597			NA											8	21					1.12685e-05	1.908e-05	0.004482	1	0
SLC17A5	26503	broad.mit.edu	37	6	74351499	74351499	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:74351499G>A	uc003phn.3	-	3	568	c.440C>T	c.(439-441)GCT>GTT	p.A147V	SLC17A5_uc010kay.2_RNA|SLC17A5_uc011dyo.1_Silent_p.C45C	NM_012434	NP_036566	Q9NRA2	S17A5_HUMAN	sialin	147	Helical; (Potential).				anion transport	integral to plasma membrane|lysosomal membrane|membrane fraction	sialic acid:hydrogen symporter activity			skin(5)|central_nervous_system(1)	6						GGTGAGGACAGCAGTGCCAAG	0.453			NA											50	121					0	0	0.00361	0	0
ELOVL4	6785	broad.mit.edu	37	6	80626442	80626442	+	Silent	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:80626442T>C	uc003pja.3	-	6	1147	c.828A>G	c.(826-828)CCA>CCG	p.P276P	ELOVL4_uc011dyt.1_RNA	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	276					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	TTCCAGCTTTTGGTTTCTTAG	0.373			NA											20	81					0	0	0.002299	0	0
GPRC6A	222545	broad.mit.edu	37	6	117149993	117149993	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:117149993C>A	uc003pxj.1	-	1	206	c.184G>T	c.(184-186)GAG>TAG	p.E62*	GPRC6A_uc003pxk.1_Nonsense_Mutation_p.E62*|GPRC6A_uc003pxl.1_Nonsense_Mutation_p.E62*	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	62	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CCAACACACTCCTGGATTTGT	0.383			NA											19	59					4.96729e-08	9.31773e-08	0.008871	1	0
LAMA2	3908	broad.mit.edu	37	6	129371197	129371197	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:129371197T>G	uc003qbn.2	+	2	352	c.247T>G	c.(247-249)TGT>GGT	p.C83G	LAMA2_uc003qbo.2_Missense_Mutation_p.C83G	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	83	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GAACCCGCAGTGTCGAATCTG	0.463			NA											12	40					0	0	0.001855	0	0
SAMD3	154075	broad.mit.edu	37	6	130530639	130530640	+	Splice_Site	DNP	CC	CC	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:130530639_130530640CC>AA	uc003qbv.2	-	6	709	c.383_splice	c.e6+1	p.R128_splice	SAMD3_uc003qbx.2_Splice_Site_p.R128_splice|SAMD3_uc003qbw.2_Splice_Site_p.R128_splice|SAMD3_uc010kfg.1_Splice_Site_p.R128_splice|SAMD3_uc003qby.2_Splice_Site_p.R128_splice|SAMD3_uc003qbz.1_Splice_Site_p.R87_splice	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform											ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		GGTACCCCCACCTCTGTTTCAA	0.381			NA											10	31					0	0	0.004672	0	0
TAAR8	83551	broad.mit.edu	37	6	132874344	132874344	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:132874344C>T	uc011ecj.1	+	1	513	c.513C>T	c.(511-513)GTC>GTT	p.V171V		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	171	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		ACACAGGTGTCAATGATGATG	0.468			NA											30	223					0	0	0.002445	0	0
IL20RA	53832	broad.mit.edu	37	6	137323275	137323275	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:137323275C>T	uc003qhj.2	-	7	1515	c.1082G>A	c.(1081-1083)GGG>GAG	p.G361E	IL20RA_uc011edl.1_Missense_Mutation_p.G312E|IL20RA_uc003qhk.2_Missense_Mutation_p.G250E|IL20RA_uc003qhi.2_Missense_Mutation_p.G93E	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	361	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		CGAAGCATACCCTAAATGTTT	0.488			NA											19	45					0	0	0.008871	0	0
SYNE1	23345	broad.mit.edu	37	6	152647561	152647561	+	Silent	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:152647561G>A	uc010kiw.2	-	79	15765	c.15163C>T	c.(15163-15165)CTG>TTG	p.L5055L	SYNE1_uc003qot.3_Silent_p.L4984L|SYNE1_uc003qou.3_Silent_p.L5055L|SYNE1_uc010kiz.2_Silent_p.L810L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5055	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GTGGCTACCAGGCTGTGGAGC	0.527			NA								HNSCC(10;0.0054)			24	52					0	0	0.00278	0	0
LPA	4018	broad.mit.edu	37	6	160978463	160978463	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr6:160978463G>A	uc003qtl.2	-	30	4892	c.4772C>T	c.(4771-4773)ACT>ATT	p.T1591I		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4099	Kringle 36.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGAACAACAGTGGGAGTCTC	0.463			NA											12	97					0	0	0.00245	0	0
CARD11	84433	broad.mit.edu	37	7	2959089	2959089	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:2959089C>T	uc003smv.2	-	18	2831	c.2427G>A	c.(2425-2427)CAG>CAA	p.Q809Q		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	809					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CGTGCCTGTCCTGGTACATGG	0.592			NA	Mis		DLBCL								11	26					0	0	0.008291	0	0
CLK2P	1197	broad.mit.edu	37	7	23625371	23625371	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:23625371C>G	uc003swk.2	-	1	776	c.126G>C	c.(124-126)ATG>ATC	p.M42I		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						GCTGGGAGGCCATGTGGTGCA	0.498			NA											19	60					0	0	0.007413	0	0
AOAH	313	broad.mit.edu	37	7	36655990	36655990	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:36655990G>A	uc003tfh.3	-	11	1243	c.842C>T	c.(841-843)TCT>TTT	p.S281F	AOAH_uc010kxf.2_Missense_Mutation_p.S281F|AOAH_uc011kba.1_Missense_Mutation_p.S249F	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	281					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						ACTTACCAAAGACATCTGCGA	0.483			NA											5	18					0	0	0.000602	0	0
GLI3	2737	broad.mit.edu	37	7	42088216	42088216	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:42088216C>A	uc011kbh.1	-	5	644	c.553G>T	c.(553-555)GCT>TCT	p.A185S	GLI3_uc011kbg.1_Missense_Mutation_p.A126S	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	185					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GACTCGGAAGCAGCAGTGGGG	0.542			NA							Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				32	78					1.08312e-15	2.47694e-15	0.001786	1	0
PCLO	27445	broad.mit.edu	37	7	82585225	82585225	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:82585225C>A	uc003uhx.2	-	5	5333	c.5044G>T	c.(5044-5046)GCA>TCA	p.A1682S	PCLO_uc003uhv.2_Missense_Mutation_p.A1682S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1613					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATGACTCTGCAGAATATTTA	0.403			NA											13	53					5.50884e-06	9.46728e-06	0.001368	1	0
SEMA3D	223117	broad.mit.edu	37	7	84697506	84697506	+	Splice_Site	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:84697506C>G	uc003uic.2	-	5	629	c.589_splice	c.e5+1	p.D197_splice	SEMA3D_uc010led.2_Splice_Site_p.D197_splice|SEMA3D_uc010lee.1_Splice_Site_p.D197_splice	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor						cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						ATTGATCTTACCTGTCATTAC	0.348	Ovarian(63;442 1191 17318 29975 31528)		NA											6	49					0	0	0.00308	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95499231	95499231	+	Silent	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:95499231C>T	uc003uoc.3	+	6	739	c.462C>T	c.(460-462)ACC>ACT	p.T154T	DYNC1I1_uc003uod.3_Silent_p.T137T|DYNC1I1_uc003uob.2_Silent_p.T117T|DYNC1I1_uc003uoe.3_Silent_p.T134T|DYNC1I1_uc010lfl.2_Silent_p.T143T	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	154					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			CAAAGGTCACCCAAGTGGATT	0.458			NA											28	92					0	0	0.007291	0	0
MUC17	140453	broad.mit.edu	37	7	100680280	100680280	+	Silent	SNP	G	G	T	rs141016213	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:100680280G>T	uc003uxp.1	+	3	5636	c.5583G>T	c.(5581-5583)ACG>ACT	p.T1861T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1861	Extracellular (Potential).|Ser-rich.|29.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAACCTCAACGCCTAGTGAAG	0.483			NA											69	282					5.22007e-41	1.42682e-40	0.00361	1	0
ZNHIT1	10467	broad.mit.edu	37	7	100866000	100866000	+	Silent	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:100866000G>T	uc003uye.2	+	2	630	c.138G>T	c.(136-138)GCG>GCT	p.A46A	ZNHIT1_uc003uyf.2_RNA	NM_006349	NP_006340	O43257	ZNHI1_HUMAN	zinc finger, HIT domain containing 1	46							metal ion binding|protein binding			large_intestine(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					ACCCCCACGCGGGACTCCCTC	0.667			NA											11	40					9.70103e-10	1.88759e-09	0.008291	1	0
PIK3CG	5294	broad.mit.edu	37	7	106513371	106513371	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:106513371G>A	uc003vdv.3	+	4	2360	c.2275G>A	c.(2275-2277)GTC>ATC	p.V759I	PIK3CG_uc003vdu.2_Missense_Mutation_p.V759I|PIK3CG_uc003vdw.2_Missense_Mutation_p.V759I	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	759					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						AAAGTATGACGTCAGTTCCCA	0.408			NA											13	47					0	0	0.001855	0	0
CLCN1	1180	broad.mit.edu	37	7	143043264	143043264	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:143043264C>A	uc003wcr.1	+	18	2291	c.2204C>A	c.(2203-2205)ACT>AAT	p.T735N	CLCN1_uc011ktc.1_Missense_Mutation_p.T347N	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	735	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CACCCCTCTACTACTGCCCCT	0.592			NA											12	33					0.00136819	0.00211683	0.001368	1	0
PTPRN2	5799	broad.mit.edu	37	7	157926489	157926490	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr7:157926489_157926490CC>AA	uc003wno.2	-	9	1556_1557	c.1435_1436GG>TT	c.(1435-1437)GGG>TTG	p.G479L	PTPRN2_uc003wnp.2_Missense_Mutation_p.G462L|PTPRN2_uc003wnq.2_Missense_Mutation_p.G479L|PTPRN2_uc003wnr.2_Missense_Mutation_p.G441L|PTPRN2_uc011kwa.1_Missense_Mutation_p.G502L	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	479	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTTCGAGGGCCCAGGCATCTGG	0.653			NA											14	54					0	0	0.004672	0	0
ADAM32	203102	broad.mit.edu	37	8	39009054	39009054	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:39009054T>C	uc003xmt.3	+	6	757	c.512T>C	c.(511-513)TTT>TCT	p.F171S	ADAM32_uc011lch.1_Missense_Mutation_p.F178S|ADAM32_uc003xmu.3_Missense_Mutation_p.F171S	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	171					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			GACAACATTTTTATAAGTGAA	0.254			NA											20	61					0	0	0.001523	0	0
PXDNL	137902	broad.mit.edu	37	8	52232511	52232511	+	Silent	SNP	T	T	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:52232511T>A	uc003xqu.3	-	23	4433	c.4332A>T	c.(4330-4332)GGA>GGT	p.G1444G	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1444	VWFC.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GACAGCAGGTTCCTTTCACCA	0.517			NA											4	24					0	0	0.000602	0	0
ARMC1	55156	broad.mit.edu	37	8	66539450	66539450	+	Splice_Site	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:66539450C>A	uc003xvl.2	-	2	418	c.183_splice	c.e2+1	p.L61_splice	ARMC1_uc011leo.1_Splice_Site_p.C23_splice	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein						metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			AGGCAACTTACAAGCAAAGCG	0.418			NA											24	89					5.35356e-11	1.07446e-10	0.00278	1	0
MMP16	4325	broad.mit.edu	37	8	89053741	89053741	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:89053741C>A	uc003yeb.3	-	10	2054	c.1772G>T	c.(1771-1773)GGA>GTA	p.G591V		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	591	Cytoplasmic (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GCGGGGTGTTCCTTTCCTCTT	0.448			NA											30	117					8.4185e-14	1.80307e-13	0.002445	1	0
RUNX1T1	862	broad.mit.edu	37	8	92988184	92988184	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:92988184G>T	uc003yfd.2	-	9	1381	c.1297C>A	c.(1297-1299)CTT>ATT	p.L433I	RUNX1T1_uc003yfc.1_Missense_Mutation_p.L406I|RUNX1T1_uc003yfe.1_Missense_Mutation_p.L396I|RUNX1T1_uc010mao.2_Missense_Mutation_p.L406I|RUNX1T1_uc011lgi.1_Missense_Mutation_p.L444I|RUNX1T1_uc010man.1_Missense_Mutation_p.L58I|RUNX1T1_uc003yfb.1_Missense_Mutation_p.L396I	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	433					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GGCCTGTGAAGGAATTCCCGA	0.493			NA											41	153					5.78141e-17	1.36565e-16	0.003214	1	0
RGS22	26166	broad.mit.edu	37	8	101011627	101011627	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:101011627A>G	uc003yjb.1	-	19	3007	c.2812T>C	c.(2812-2814)TGG>CGG	p.W938R	RGS22_uc003yja.1_Missense_Mutation_p.W757R|RGS22_uc003yjc.1_Missense_Mutation_p.W926R	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	938	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			ATCTTCCCCCAGCCACCACTT	0.363			NA											17	57					0	0	0.00499	0	0
RGS22	26166	broad.mit.edu	37	8	101065029	101065030	+	Splice_Site	DNP	CC	CC	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:101065029_101065030CC>AA	uc003yjb.1	-	10	1884	c.1689_splice	c.e10+1	p.Q563_splice	RGS22_uc003yja.1_Splice_Site_p.Q382_splice|RGS22_uc003yjc.1_Splice_Site_p.Q551_splice|RGS22_uc011lgz.1_Splice_Site|RGS22_uc010mbo.1_Splice_Site	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22						negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GTACACCCTACCTGGATCTCAG	0.396			NA											73	123					0	0	0.004672	0	0
CSMD3	114788	broad.mit.edu	37	8	113518953	113518953	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:113518953T>C	uc003ynu.2	-	29	5021	c.4862A>G	c.(4861-4863)AAT>AGT	p.N1621S	CSMD3_uc003yns.2_Missense_Mutation_p.N893S|CSMD3_uc003ynt.2_Missense_Mutation_p.N1581S|CSMD3_uc011lhx.1_Missense_Mutation_p.N1517S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1621	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATAGTCTGCATTGACGGTGAT	0.383			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			28	63					0	0	0.001786	0	0
COL14A1	7373	broad.mit.edu	37	8	121262899	121262899	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:121262899C>A	uc003yox.2	+	22	2911	c.2646C>A	c.(2644-2646)AAC>AAA	p.N882K	COL14A1_uc003yoy.2_Missense_Mutation_p.N560K	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	882	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CTGACATTAACACCATCCTTA	0.448			NA											32	46					6.53348e-20	1.65208e-19	0.003755	1	0
HAS2	3037	broad.mit.edu	37	8	122627237	122627237	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:122627237A>C	uc003yph.2	-	4	1309	c.771T>G	c.(769-771)AGT>AGG	p.S257R		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	257	Cytoplasmic (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			AATATCTTACACTGCTGAGGA	0.378			NA											17	64					0	0	0.004007	0	0
ADCY8	114	broad.mit.edu	37	8	131955633	131955633	+	Silent	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:131955633G>T	uc003ytd.3	-	4	1573	c.1317C>A	c.(1315-1317)CTC>CTA	p.L439L	ADCY8_uc010mds.2_Silent_p.L439L	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	439	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGAGCTCGTTGAGCATCCTGA	0.473			NA								HNSCC(32;0.087)			16	46					1.37657e-19	3.43543e-19	0.001882	1	0
LRRC6	23639	broad.mit.edu	37	8	133584708	133584708	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:133584708A>G	uc003ytk.2	-	12	1321	c.1247T>C	c.(1246-1248)CTA>CCA	p.L416P	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	416						cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GTCTACTTCTAGTTTCTCCAT	0.358			NA											55	115					0	0	0.00361	0	0
FAM135B	51059	broad.mit.edu	37	8	139163840	139163840	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:139163840G>A	uc003yuy.2	-	13	3049	c.2878C>T	c.(2878-2880)CCT>TCT	p.P960S	FAM135B_uc003yux.2_Missense_Mutation_p.P861S|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.P522S|FAM135B_uc003yvb.2_Missense_Mutation_p.P522S	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	960										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ATAATGCAAGGTGAACCGCTT	0.507			NA								HNSCC(54;0.14)			40	147					0	0	0.002522	0	0
FAM135B	51059	broad.mit.edu	37	8	139255226	139255226	+	Silent	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:139255226A>G	uc003yuy.2	-	7	799	c.628T>C	c.(628-630)TTG>CTG	p.L210L	FAM135B_uc003yux.2_Silent_p.L111L|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	210										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CCAAAGACCAAGTTTTCCAGA	0.463			NA								HNSCC(54;0.14)			6	47					0	0	0.001984	0	0
COL22A1	169044	broad.mit.edu	37	8	139691879	139691879	+	Missense_Mutation	SNP	A	A	T	rs144461812	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:139691879A>T	uc003yvd.2	-	40	3500	c.3053T>A	c.(3052-3054)CTG>CAG	p.L1018Q	COL22A1_uc011ljo.1_Intron	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1018	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TTGCCCTCCCAGTGCACAGTT	0.343			NA								HNSCC(7;0.00092)			35	82					0	0	0.007835	0	0
Unknown	0	broad.mit.edu	37	8	145318037	145318037	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr8:145318037G>A	uc003zbm.3	-	11	1304	c.1277C>T	c.(1276-1278)ACG>ATG	p.T426M		NM_015201	NP_056016			block of proliferation 1												NA						GGTCACCTGCGTCACTGGCTG	0.701			NA											5	15					0	0	0.001168	0	0
GLDC	2731	broad.mit.edu	37	9	6587241	6587241	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:6587241G>T	uc003zkc.2	-	15	1943	c.1750C>A	c.(1750-1752)CCT>ACT	p.P584T		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	584					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	TGATCCAGAGGCACAAAGGGG	0.368			NA											26	47					3.73148e-12	7.64953e-12	0.007291	1	0
PTPRD	5789	broad.mit.edu	37	9	8504367	8504367	+	Silent	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:8504367C>G	uc003zkk.2	-	22	2427	c.1716G>C	c.(1714-1716)CTG>CTC	p.L572L	PTPRD_uc003zkp.2_Silent_p.L572L|PTPRD_uc003zkq.2_Silent_p.L572L|PTPRD_uc003zkr.2_Silent_p.L566L|PTPRD_uc003zks.2_Silent_p.L562L|PTPRD_uc003zkl.2_Silent_p.L572L|PTPRD_uc003zkm.2_Silent_p.L559L|PTPRD_uc003zkn.2_Silent_p.L572L|PTPRD_uc003zko.2_Silent_p.L569L	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	572	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCAGTCCTTGCAGCCTATATG	0.438			NA								TSP Lung(15;0.13)			29	84					0	0	0.008361	0	0
IFNB1	3456	broad.mit.edu	37	9	21077501	21077501	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:21077501A>G	uc003zok.2	-	1	443	c.368T>C	c.(367-369)CTG>CCG	p.L123P		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	123					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	TTTTTCTTCCAGGACTGTCTT	0.423			NA											54	127					0	0	0.00361	0	0
FRMPD1	22844	broad.mit.edu	37	9	37711392	37711392	+	Silent	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:37711392G>C	uc004aag.1	+	5	452	c.408G>C	c.(406-408)TCG>TCC	p.S136S	FRMPD1_uc004aah.1_Silent_p.S136S	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	136						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GCTGCACGTCGGTAAATCTCT	0.438			NA											52	136					0	0	0.00361	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88292350	88292350	+	Splice_Site	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:88292350C>A	uc011ltd.1	-	5	469	c.436_splice	c.e5+1	p.D146_splice	AGTPBP1_uc011ltc.1_Splice_Site_p.A88_splice|AGTPBP1_uc010mqc.2_Splice_Site_p.D146_splice|AGTPBP1_uc011lte.1_Splice_Site_p.D198_splice	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1						C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						AAATCCCTTACCTTTTGGTCC	0.318			NA											23	65					1.77063e-15	4.00135e-15	0.005443	1	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900028	112900028	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:112900028G>C	uc004bei.2	+	9	3092	c.2900G>C	c.(2899-2901)GGG>GCG	p.G967A	PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.G735A|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.G735A|PALM2-AKAP2_uc004bel.1_Missense_Mutation_p.G545A|AKAP2_uc011lwi.1_Missense_Mutation_p.G593A|AKAP2_uc004bem.2_Missense_Mutation_p.G593A|PALM2-AKAP2_uc010mtw.1_Missense_Mutation_p.G553A|AKAP2_uc011lwj.1_Missense_Mutation_p.G504A|PALM2-AKAP2_uc004ben.2_Missense_Mutation_p.G504A	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	504							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						AGTGACAGCGGGGCATCCAAT	0.522			NA											12	72					0	0	0.001855	0	0
SVEP1	79987	broad.mit.edu	37	9	113173903	113173903	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:113173903C>G	uc010mtz.2	-	37	6425	c.6088G>C	c.(6088-6090)GCC>CCC	p.A2030P	SVEP1_uc010mty.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2030	Sushi 11.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCTGGAGAGGCGTGGTCCACA	0.542			NA											6	16					0	0	0.001168	0	0
PTGS1	5742	broad.mit.edu	37	9	125148974	125148974	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:125148974C>A	uc004bmg.1	+	9	1394	c.1259C>A	c.(1258-1260)GCC>GAC	p.A420D	PTGS1_uc011lys.1_Intron|PTGS1_uc010mwb.1_Intron|PTGS1_uc004bmf.1_Intron|PTGS1_uc004bmh.1_Missense_Mutation_p.A311D|PTGS1_uc011lyt.1_Missense_Mutation_p.A311D	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	420					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GGGGTTGAGGCCCTGGTGGAT	0.428			NA											28	42					8.24728e-16	1.90885e-15	0.004656	1	0
DENND1A	57706	broad.mit.edu	37	9	126214567	126214567	+	Silent	SNP	A	A	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr9:126214567A>C	uc004bnz.1	-	17	1520	c.1287T>G	c.(1285-1287)ACT>ACG	p.T429T	DENND1A_uc011lzl.1_Silent_p.T204T|DENND1A_uc004bny.1_Silent_p.T168T|DENND1A_uc011lzm.1_Silent_p.T397T|DENND1A_uc004boa.1_Silent_p.T429T|DENND1A_uc004bob.1_Silent_p.T399T|DENND1A_uc004boc.2_Silent_p.T397T	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	429						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						ACTTGTAGACAGTCTTCATGG	0.358			NA											6	58					0	0	0.001984	0	0
MXRA5	25878	broad.mit.edu	37	X	3228256	3228256	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:3228256C>G	uc004crg.3	-	7	8145	c.7988G>C	c.(7987-7989)GGG>GCG	p.G2663A		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2663	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTGCCCAGCCCCGGGAGGGGT	0.592			NA											30	76					0	0	0.003271	0	0
MXRA5	25878	broad.mit.edu	37	X	3242605	3242605	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:3242605T>C	uc004crg.3	-	5	1278	c.1121A>G	c.(1120-1122)TAT>TGT	p.Y374C		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	374						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TAGCTTTTCATAGTTTTCTCG	0.438			NA											16	21					0	0	0.004007	0	0
KDM5C	8242	broad.mit.edu	37	X	53245284	53245284	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:53245284C>G	uc004drz.2	-	6	1286	c.753G>C	c.(751-753)ATG>ATC	p.M251I	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Missense_Mutation_p.M184I|KDM5C_uc004dsa.2_Missense_Mutation_p.M250I	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	251					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						TGTCTTTGGCCATGAGGCCCA	0.552			NA	N|F|S		clear cell renal carcinoma								3	97					0	0	0.004672	0	0
ITIH5L	347365	broad.mit.edu	37	X	54817333	54817333	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:54817333C>A	uc004dtj.2	-	4	583	c.553G>T	c.(553-555)GGC>TGC	p.G185C		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	185					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TAGGAGATGCCTGTCCTTTCT	0.587			NA											28	37					4.59853e-10	8.97808e-10	0.005443	1	0
MTMR8	55613	broad.mit.edu	37	X	63490911	63490911	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:63490911C>A	uc004dvs.2	-	13	1592	c.1524G>T	c.(1522-1524)CAG>CAT	p.Q508H	MTMR8_uc011mou.1_Intron	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	508						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						TCTGCTTGGGCTGCAGCCCTT	0.448			NA											13	24					9.31168e-06	1.58602e-05	0.001855	1	0
TEX11	56159	broad.mit.edu	37	X	70080747	70080747	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:70080747G>T	uc004dyl.2	-	6	491	c.329C>A	c.(328-330)GCC>GAC	p.A110D	TEX11_uc004dym.2_Missense_Mutation_p.A95D	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	110							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					GGCAAATGAGGCTTCACACAT	0.338			NA											9	32					1.12685e-05	1.908e-05	0.004482	1	0
CDX4	1046	broad.mit.edu	37	X	72667475	72667475	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:72667475C>T	uc011mqk.1	+	1	386	c.386C>T	c.(385-387)CCA>CTA	p.P129L		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	129						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					AGCAGCCTACCAGGCCAGGCT	0.682			NA											12	13					0	0	0.000978	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74742811	74742811	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:74742811G>A	uc004ecg.2	-	1	527	c.49C>T	c.(49-51)CGC>TGC	p.R17C	ZDHHC15_uc004ech.2_Missense_Mutation_p.R17C|ZDHHC15_uc011mqo.1_RNA|ZDHHC15_uc004eci.2_Missense_Mutation_p.R17C	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	17						integral to membrane	zinc ion binding			ovary(2)	2						AGTACCCGGCGGCAGCACCGC	0.632			NA											7	23					0	0	0.00308	0	0
PABPC5	140886	broad.mit.edu	37	X	90691248	90691248	+	Silent	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:90691248A>T	uc004efg.2	+	2	1112	c.672A>T	c.(670-672)CCA>CCT	p.P224P	PABPC5_uc004eff.1_Silent_p.P60P	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	224	RRM 3.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						AATATGGGCCAACTGAGAGTG	0.418			NA											25	40					0	0	0.005443	0	0
COL4A6	1288	broad.mit.edu	37	X	107457416	107457416	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:107457416C>A	uc004enw.3	-	6	473	c.370G>T	c.(370-372)GAT>TAT	p.D124Y	COL4A6_uc004env.3_Missense_Mutation_p.D123Y|COL4A6_uc011msn.1_Missense_Mutation_p.D123Y|COL4A6_uc010npk.2_Missense_Mutation_p.D123Y	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	124	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TTACAGCCATCCAGACCAGGT	0.512	Melanoma(87;1895 1945 2589 7165)		NA							Alport_syndrome_with_Diffuse_Leiomyomatosis				21	67					1.96292e-10	3.84545e-10	0.001523	1	0
RGAG1	57529	broad.mit.edu	37	X	109695218	109695218	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:109695218C>A	uc004eor.1	+	3	1619	c.1373C>A	c.(1372-1374)ACA>AAA	p.T458K	RGAG1_uc011msr.1_Missense_Mutation_p.T458K	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	458										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ATGTCAGCCACAGCCTCTAGA	0.498			NA											26	171					2.44723e-14	5.36149e-14	0.004656	1	0
RGAG1	57529	broad.mit.edu	37	X	109696443	109696443	+	Silent	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:109696443A>T	uc004eor.1	+	3	2844	c.2598A>T	c.(2596-2598)CCA>CCT	p.P866P	RGAG1_uc011msr.1_Silent_p.P866P	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	866										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TGAGAGCCCCAGACTCTAGAG	0.557			NA											69	175					0	0	0.00361	0	0
CAPN6	827	broad.mit.edu	37	X	110489966	110489966	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:110489966A>T	uc004epc.1	-	13	1933	c.1765T>A	c.(1765-1767)TGT>AGT	p.C589S	CAPN6_uc011msu.1_Missense_Mutation_p.C334S	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	589	C2.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						AACTGATCACAGAATTTTCGG	0.512			NA											17	41					0	0	0.006122	0	0
LONRF3	79836	broad.mit.edu	37	X	118123383	118123383	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:118123383C>A	uc004eqw.2	+	4	1103	c.1072C>A	c.(1072-1074)CTC>ATC	p.L358I	LONRF3_uc004eqx.2_Missense_Mutation_p.L317I|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Missense_Mutation_p.L102I	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	358					proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						CAATCTGGAGCTCCCACATTG	0.493			NA											9	63					3.09899e-07	5.5588e-07	0.004482	1	0
BCORL1	63035	broad.mit.edu	37	X	129149209	129149209	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:129149209G>T	uc004evb.1	+	4	2575	c.2461G>T	c.(2461-2463)GGG>TGG	p.G821W	BCORL1_uc010nrd.1_Missense_Mutation_p.G723W	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	821					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						TTCAGTCAATGGGAAACCTAC	0.602			NA											12	69					0.00136819	0.00211683	0.001368	1	0
FAM127C	441518	broad.mit.edu	37	X	134156366	134156366	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:134156366C>G	uc004eyc.1	-	1	201	c.124G>C	c.(124-126)GAG>CAG	p.E42Q		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	42											0	Acute lymphoblastic leukemia(192;0.000127)					ACGATGAACTCCGGGAGCCGG	0.652			NA											21	87					0	0	0.008871	0	0
GPR101	83550	broad.mit.edu	37	X	136112793	136112793	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:136112793G>T	uc011mwh.1	-	1	1041	c.1041C>A	c.(1039-1041)GAC>GAA	p.D347E		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	347	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CTTCACCCAAGTCAATGCTGC	0.547			NA											43	248					1.41504e-22	3.67239e-22	0.002852	1	0
F9	2158	broad.mit.edu	37	X	138612946	138612946	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:138612946T>C	uc004fas.1	+	1	52	c.23T>C	c.(22-24)ATG>ACG	p.M8T	F9_uc004fat.1_Missense_Mutation_p.M8T	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	8					blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	AACATGATCATGGCAGAATCA	0.408			NA											22	89					0	0	0.005443	0	0
SLITRK2	84631	broad.mit.edu	37	X	144904084	144904084	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:144904084G>T	uc004fcd.2	+	5	1131	c.141G>T	c.(139-141)GAG>GAT	p.E47D	SLITRK2_uc010nsp.2_Missense_Mutation_p.E47D|SLITRK2_uc010nso.2_Missense_Mutation_p.E47D|SLITRK2_uc011mwq.1_Missense_Mutation_p.E47D|SLITRK2_uc011mwr.1_Missense_Mutation_p.E47D|SLITRK2_uc011mws.1_Missense_Mutation_p.E47D|SLITRK2_uc004fcg.2_Missense_Mutation_p.E47D|SLITRK2_uc011mwt.1_Missense_Mutation_p.E47D	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	47	Extracellular (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TCAACTGTGAGAACAAAGGAT	0.448			NA											15	48					1.5739e-10	3.11523e-10	0.004007	1	0
MAGEA8	4107	broad.mit.edu	37	X	149013595	149013595	+	Silent	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:149013595C>A	uc004fdw.1	+	3	764	c.549C>A	c.(547-549)ACC>ACA	p.T183T		NM_005364	NP_005355	P43361	MAGA8_HUMAN	melanoma antigen family A, 8	183	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTTGTCACCTGCCTGGGCC	0.542			NA											13	94					9.31168e-06	1.58602e-05	0.001855	1	0
CLIC2	1193	broad.mit.edu	37	X	154508497	154508497	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:154508497C>A	uc004fnf.2	-	5	773	c.523G>T	c.(523-525)GAT>TAT	p.D175Y	CLIC2_uc010nvj.1_Missense_Mutation_p.D193Y	NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2	175	GST C-terminal.|C-terminal.				signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity			large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGGTCCCCATCCAAGAATAGT	0.453	Melanoma(108;581 1592 2289 21669 28822)		NA											11	96					1.58986e-06	2.78226e-06	0.008291	1	0
SPRY3	10251	broad.mit.edu	37	X	155003662	155003662	+	Silent	SNP	C	C	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:155003662C>G	uc004fnq.1	+	2	583	c.129C>G	c.(127-129)TCC>TCG	p.S43S	SPRY3_uc010nvl.1_Silent_p.S43S	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	43					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCAGCCCTTCCCTTATTGTGC	0.547			NA											25	97					0	0	0.00632	0	0
PAPPA2	60676	broad.mit.edu	37	1	176811562	176811562	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr1:176811562delG	uc001gkz.2	+	23	6512	c.5348delG	c.(5347-5349)CGGfs	p.R1783fs	PAPPA2_uc009www.2_RNA|uc001gla.1_5'Flank	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1783					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding	p.R1783L(1)		ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGCACCTGCCGGGACCCCAAG	0.512			NA											10	57	---	---	---	---	NA	NA	NA	NA	NA
MTPAP	55149	broad.mit.edu	37	10	30604933	30604934	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:30604933_30604934insA	uc001iva.3	-	8	1407_1408	c.1344_1345insT	c.(1342-1347)TTTGGCfs	p.F448fs	MTPAP_uc001ivb.3_Frame_Shift_Ins_p.F578fs	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	448_449	PAP-associated.				cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						GCAAAATTGCCAAAATACTCAA	0.292			NA											15	26	---	---	---	---	NA	NA	NA	NA	NA
CNNM2	54805	broad.mit.edu	37	10	104816716	104816716	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr10:104816716delC	uc001kwm.2	+	4	2192	c.2068delC	c.(2068-2070)CTGfs	p.L690fs	CNNM2_uc001kwn.2_Frame_Shift_Del_p.L690fs	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	690					ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CGTTCTCATTCTGCAGGTCAG	0.433			NA											56	123	---	---	---	---	NA	NA	NA	NA	NA
KL	9365	broad.mit.edu	37	13	33635564	33635565	+	Frame_Shift_Ins	INS	-	-	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr13:33635564_33635565insT	uc001uus.2	+	4	2356_2357	c.2348_2349insT	c.(2347-2349)AATfs	p.N783fs	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	783	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CAAAGAAACAATTTTCTTCTTC	0.426			NA											25	47	---	---	---	---	NA	NA	NA	NA	NA
Unknown	0	broad.mit.edu	37	16	33784704	33784705	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr16:33784704_33784705insA	uc010vgb.1	+	2	113_114	c.93_94insA	c.(91-96)AACACCfs	p.N31fs						RecName: Full=Transporter;												NA						TCTACAACAACACCAACGTGTA	0.535			NA											7	59	---	---	---	---	NA	NA	NA	NA	NA
GAST	2520	broad.mit.edu	37	17	39871829	39871829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:39871829delG	uc002hxl.2	+	2	173	c.141delG	c.(139-141)CTGfs	p.L47fs	JUP_uc010wfs.1_Intron	NM_000805	NP_000796	P01350	GAST_HUMAN	gastrin preproprotein	47						extracellular region	hormone activity				0		Breast(137;0.000307)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			TACCCTGGCTGGAGCAGCAGG	0.652			NA											38	78	---	---	---	---	NA	NA	NA	NA	NA
ITGB4	3691	broad.mit.edu	37	17	73747115	73747122	+	Frame_Shift_Del	DEL	GCTGGGCT	GCTGGGCT	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	GCTGGGCT	GCTGGGCT	-	-	GCTGGGCT	GCTGGGCT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr17:73747115_73747122delGCTGGGCT	uc002jpg.2	+	30	3903_3910	c.3716_3723delGCTGGGCT	c.(3715-3723)AGCTGGGCTfs	p.S1239fs	ITGB4_uc002jph.2_Frame_Shift_Del_p.S1239fs|ITGB4_uc002jpi.3_Frame_Shift_Del_p.S1239fs|ITGB4_uc002jpj.2_Frame_Shift_Del_p.S1239fs	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1239_1241	Fibronectin type-III 2.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			ACCCAGCTGAGCTGGGCTGAGCCGGCTG	0.596			NA											11	78	---	---	---	---	NA	NA	NA	NA	NA
FAM98C	147965	broad.mit.edu	37	19	38899502	38899504	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	AAG	AAG	-	-	AAG	AAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr19:38899502_38899504delAAG	uc002oin.1	+	8	1049_1051	c.1030_1032delAAG	c.(1030-1032)AAGdel	p.K349del	FAM98C_uc002oio.1_In_Frame_Del_p.K267del|FAM98C_uc010xtz.1_3'UTR	NM_174905	NP_777565	Q17RN3	FA98C_HUMAN	hypothetical protein LOC147965	349										skin(1)	1	all_cancers(60;3.95e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TTGGGGTCGCAAGAAGAAGAAGA	0.606			NA											8	91	---	---	---	---	NA	NA	NA	NA	NA
SCN7A	6332	broad.mit.edu	37	2	167322380	167322380	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:167322380delC	uc002udu.1	-	7	909	c.782delG	c.(781-783)GGCfs	p.G261fs	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	261	Helical; Name=S5 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TTTCAAGTTGCCCATGAAGAG	0.413			NA											15	115	---	---	---	---	NA	NA	NA	NA	NA
DYTN	391475	broad.mit.edu	37	2	207528023	207528023	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr2:207528023delC	uc002vbr.1	-	11	1354	c.1237delG	c.(1237-1239)GATfs	p.D413fs		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	413						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		TGCAAATAATCCCCTCCCTTT	0.468			NA											17	123	---	---	---	---	NA	NA	NA	NA	NA
SFMBT1	51460	broad.mit.edu	37	3	52945171	52945172	+	Frame_Shift_Ins	INS	-	-	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr3:52945171_52945172insC	uc003dgf.2	-	18	2322_2323	c.1753_1754insG	c.(1753-1755)GCTfs	p.A585fs	SFMBT1_uc010hmr.2_Frame_Shift_Ins_p.A532fs|SFMBT1_uc003dgg.2_Frame_Shift_Ins_p.A585fs|SFMBT1_uc003dgh.2_Frame_Shift_Ins_p.A585fs	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	585					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		CTCAACAGTAGCCCGATAACTC	0.421			NA											16	76	---	---	---	---	NA	NA	NA	NA	NA
GMCL1L	64396	broad.mit.edu	37	5	177613745	177613745	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chr5:177613745delC	uc003mit.1	-	1	689	c.556delG	c.(556-558)GCAfs	p.A186fs		NR_003281				SubName: Full=Germ cell-less homolog 1 (Drosophila); SubName: Full=Putative uncharacterized protein FLJ13057;												0						CAAGCTGCTGCCAAAATGGCA	0.433			NA											21	63	---	---	---	---	NA	NA	NA	NA	NA
PCDH19	57526	broad.mit.edu	37	X	99551618	99551618	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	57e3657d-7a3c-4d80-a2c2-2de0293f5f05	f54f5b4b-f15b-4f65-9c0b-c0656d57413b	g.chrX:99551618delC	uc010nmz.2	-	6	4780	c.3104delG	c.(3103-3105)GGCfs	p.G1035fs	PCDH19_uc004efw.3_Frame_Shift_Del_p.G987fs|PCDH19_uc004efx.3_Frame_Shift_Del_p.G988fs	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1035	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						AGTCCTCTTGCCTTTCAGGGT	0.597			NA											14	29	---	---	---	---	NA	NA	NA	NA	NA
