Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DNAJC16	23341	broad.mit.edu	37	1	15890542	15890542	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:15890542G>T	uc001aws.2	+	10	1577	c.1457G>T	c.(1456-1458)CGT>CTT	p.R486L	DNAJC16_uc001awr.1_Missense_Mutation_p.R486L|DNAJC16_uc001awt.2_Missense_Mutation_p.R174L|DNAJC16_uc001awu.2_RNA	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	486	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GACCAGCTGCGTAAAGATCCA	0.542			NA											58	200					8.81991e-31	2.14429e-30	0.01441	1	0
TAS1R2	80834	broad.mit.edu	37	1	19168239	19168239	+	Silent	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:19168239G>A	uc001bba.1	-	5	1576	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	525	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TGTGGTTGAGGAAGGTGCCGG	0.448			NA											13	52					0	0	0.013537	0	0
STX12	23673	broad.mit.edu	37	1	28144412	28144412	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:28144412C>T	uc001bou.3	+	7	752	c.627C>T	c.(625-627)ATC>ATT	p.I209I		NM_177424	NP_803173	Q86Y82	STX12_HUMAN	syntaxin 12	209	t-SNARE coiled-coil homology.|Cytoplasmic (Potential).				cholesterol efflux|intracellular protein transport|protein stabilization|vesicle-mediated transport	Golgi apparatus|integral to membrane|membrane raft|phagocytic vesicle	SNAP receptor activity			breast(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|all_lung(284;9.43e-05)|Lung NSC(340;0.000185)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;3.96e-24)|Colorectal(126;3.46e-08)|COAD - Colon adenocarcinoma(152;1.83e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00258)|KIRC - Kidney renal clear cell carcinoma(1967;0.00302)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0649)		CCATGATGATCCATGACCAGG	0.284	Ovarian(5;5 342 2097 9488 34083)		NA											10	45					0	0	0.013537	0	0
STX12	23673	broad.mit.edu	37	1	28144414	28144414	+	Missense_Mutation	SNP	A	A	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:28144414A>C	uc001bou.3	+	7	754	c.629A>C	c.(628-630)CAT>CCT	p.H210P		NM_177424	NP_803173	Q86Y82	STX12_HUMAN	syntaxin 12	210	t-SNARE coiled-coil homology.|Cytoplasmic (Potential).				cholesterol efflux|intracellular protein transport|protein stabilization|vesicle-mediated transport	Golgi apparatus|integral to membrane|membrane raft|phagocytic vesicle	SNAP receptor activity			breast(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|all_lung(284;9.43e-05)|Lung NSC(340;0.000185)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;3.96e-24)|Colorectal(126;3.46e-08)|COAD - Colon adenocarcinoma(152;1.83e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00258)|KIRC - Kidney renal clear cell carcinoma(1967;0.00302)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0649)		ATGATGATCCATGACCAGGGT	0.279	Ovarian(5;5 342 2097 9488 34083)		NA											9	45					0	0	0.008291	0	0
CSMD2	114784	broad.mit.edu	37	1	34092172	34092172	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:34092172A>T	uc001bxn.1	-	33	5119	c.5090T>A	c.(5089-5091)CTG>CAG	p.L1697Q	CSMD2_uc001bxm.1_Missense_Mutation_p.L1737Q|CSMD2_uc001bxo.1_Missense_Mutation_p.L610Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1697	Extracellular (Potential).|CUB 10.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCCAAGGGCAGTGATTCTCC	0.557			NA											6	18					0	0	0.001984	0	0
GNL2	29889	broad.mit.edu	37	1	38059394	38059394	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:38059394G>A	uc001cbk.2	-	2	281	c.118C>T	c.(118-120)CGC>TGC	p.R40C	GNL2_uc010oif.1_5'UTR|GNL2_uc009vve.2_Missense_Mutation_p.R40C	NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	40					ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				ATATTCAGGCGCCGGATGGTG	0.512			NA											6	136					0	0	0.00308	0	0
USP33	23032	broad.mit.edu	37	1	78207102	78207102	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:78207102C>A	uc001dht.2	-	4	534	c.187G>T	c.(187-189)GAT>TAT	p.D63Y	USP33_uc001dhu.2_Missense_Mutation_p.D32Y|USP33_uc001dhv.2_5'UTR|USP33_uc001dhw.2_Missense_Mutation_p.D63Y	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	63	UBP-type.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						ACTTTACAATCCTGACAAGTA	0.303	Melanoma(152;72 1870 11110 26780 42647)		NA											28	155					1.16021e-09	2.19611e-09	0.007291	1	0
AGL	178	broad.mit.edu	37	1	100343333	100343333	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:100343333C>T	uc001dsi.1	+	12	1960	c.1560C>T	c.(1558-1560)TTC>TTT	p.F520F	AGL_uc001dsj.1_Silent_p.F520F|AGL_uc001dsk.1_Silent_p.F520F|AGL_uc001dsl.1_Silent_p.F520F|AGL_uc001dsm.1_Silent_p.F504F|AGL_uc001dsn.1_Silent_p.F503F	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	520	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		CAACTTATTTCCAGGGAGTAC	0.393			NA											16	67					0	0	0.006122	0	0
CCDC76	54482	broad.mit.edu	37	1	100614308	100614308	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:100614308G>T	uc001dsv.2	+	11	1397	c.1378G>T	c.(1378-1380)GTG>TTG	p.V460L	CCDC76_uc010ouf.1_RNA|CCDC76_uc009wea.2_3'UTR	NM_019083	NP_061956	Q9NUP7	TRM13_HUMAN	coiled-coil domain containing 76	460					tRNA processing		metal ion binding|methyltransferase activity			ovary(1)	1		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0814)|all cancers(265;0.133)|COAD - Colon adenocarcinoma(174;0.146)|Lung(183;0.194)		AGACCCTCTGGTGTCTTTGGA	0.393			NA											7	45					8.12818e-05	0.000128212	0.001984	1	0
SYT6	148281	broad.mit.edu	37	1	114640500	114640500	+	Splice_Site	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:114640500C>A	uc001eev.2	-	6	1360	c.1110_splice	c.e6-1	p.R370_splice	SYT6_uc001eeu.2_Splice_Site_p.R15_splice	NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI						acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTGGCCCACTCTGAGGGAGAA	0.577			NA											8	42					0.000442599	0.000681912	0.006214	1	0
VANGL1	81839	broad.mit.edu	37	1	116233804	116233804	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:116233804C>T	uc001efv.1	+	8	1650	c.1379C>T	c.(1378-1380)TCT>TTT	p.S460F	VANGL1_uc009wgy.1_Missense_Mutation_p.S458F	NM_138959	NP_620409	Q8TAA9	VANG1_HUMAN	vang-like 1	460	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane	protein binding			central_nervous_system(1)	1	Lung SC(450;0.211)	all_cancers(81;1.24e-06)|all_epithelial(167;1.02e-06)|all_lung(203;7.95e-06)|Lung NSC(69;4.97e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CGCTGGCTCTCTACACAGTGG	0.522			NA											15	38					0	0	0.00245	0	0
MAN1A2	10905	broad.mit.edu	37	1	118003128	118003128	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:118003128G>T	uc001ehd.1	+	7	1689	c.968G>T	c.(967-969)TGG>TTG	p.W323L	MAN1A2_uc009whg.1_Missense_Mutation_p.W113L	NM_006699	NP_006690	O60476	MA1A2_HUMAN	mannosidase, alpha, class 1A, member 2	323	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity				0	Lung SC(450;0.225)	all_cancers(81;7.9e-06)|all_epithelial(167;7.39e-07)|all_lung(203;2.84e-06)|Lung NSC(69;1.99e-05)		Lung(183;0.0688)|Kidney(133;0.114)|LUSC - Lung squamous cell carcinoma(189;0.223)|KIRC - Kidney renal clear cell carcinoma(1967;0.237)|Colorectal(144;0.243)		GGGCGAAACTGGGGCTGGGCA	0.423	Ovarian(33;199 881 8228 13687 31538)		NA											32	94					9.65963e-10	1.85493e-09	0.003271	1	0
TXNIP	10628	broad.mit.edu	37	1	145438883	145438883	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:145438883G>T	uc001enn.3	+	1	422	c.81G>T	c.(79-81)GTG>GTT	p.V27V	NBPF10_uc001emp.3_Intron|TXNIP_uc001enm.1_Intron|TXNIP_uc010oys.1_5'Flank	NM_006472	NP_006463	Q9H3M7	TXNIP_HUMAN	thioredoxin interacting protein	27					cell cycle|keratinocyte differentiation|transcription, DNA-dependent		ubiquitin protein ligase binding			ovary(2)	2	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCGAGAAGGTGGCTGGCCGGG	0.507			NA											60	65					1.14385e-22	2.73082e-22	0.01441	1	0
FLG2	388698	broad.mit.edu	37	1	152324797	152324797	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:152324797C>A	uc001ezw.3	-	3	5538	c.5465G>T	c.(5464-5466)CGA>CTA	p.R1822L	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1822							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGTGTCCTCGTGAGTGTGG	0.522			NA											32	333					1.36615e-20	3.17569e-20	0.013726	1	0
LCE3E	353145	broad.mit.edu	37	1	152538635	152538635	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:152538635G>T	uc001faa.2	-	2	106	c.50C>A	c.(49-51)CCC>CAC	p.P17H		NM_178435	NP_848522	Q5T5B0	LCE3E_HUMAN	late cornified envelope 3E	17					keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		Lung(1;0.000294)|LUAD - Lung adenocarcinoma(1;0.00527)|LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)		CTTGGGTGAGGGGCACTTGGG	0.592			NA											12	114					2.27111e-07	3.85798e-07	0.013537	1	0
CHRNB2	1141	broad.mit.edu	37	1	154544242	154544242	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:154544242A>T	uc001ffg.2	+	5	1207	c.943A>T	c.(943-945)AGC>TGC	p.S315C		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	315	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	CATCGTCACCAGCGTGTGCGT	0.627			NA											29	38					0	0	0.008361	0	0
CADM3	57863	broad.mit.edu	37	1	159170598	159170598	+	Silent	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:159170598C>A	uc001ftl.2	+	9	1225	c.1083C>A	c.(1081-1083)ACC>ACA	p.T361T	CADM3_uc001ftk.2_Silent_p.T395T|uc001ftm.1_Intron	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	361	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					ACACAGGAACCTACCTGACAC	0.582			NA											35	61					1.26612e-14	2.72781e-14	0.003271	1	0
SLAMF8	56833	broad.mit.edu	37	1	159799681	159799681	+	Silent	SNP	T	T	C	rs141549313		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:159799681T>C	uc001fue.3	+	2	276	c.66T>C	c.(64-66)GGT>GGC	p.G22G		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	22						integral to membrane					0	all_hematologic(112;0.0597)					CAGTTACTGGTGCCCAAGTGC	0.587			NA											36	139					0	0	0.003755	0	0
ITLN1	55600	broad.mit.edu	37	1	160850401	160850401	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:160850401G>C	uc001fxc.2	-	6	778	c.662C>G	c.(661-663)TCT>TGT	p.S221C		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	221	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TGAGTAATAAGATGCTGTTTT	0.448			NA											65	257					0	0	0.01441	0	0
FMO4	2329	broad.mit.edu	37	1	171303751	171303751	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:171303751C>T	uc001gho.2	+	8	1246	c.1029C>T	c.(1027-1029)AGC>AGT	p.S343S		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	343					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CTCTTAAAAGCCTCTGTACAA	0.383	Pancreas(24;816 862 7754 7993 32832)		NA											12	121					0	0	0.010729	0	0
TNN	63923	broad.mit.edu	37	1	175092548	175092548	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:175092548C>A	uc001gkl.1	+	12	2776	c.2663C>A	c.(2662-2664)CCC>CAC	p.P888H		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	888	Fibronectin type-III 8.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		ATTGACGGCCCCAAAAACCTA	0.473			NA											29	62					3.73148e-12	7.37941e-12	0.007291	1	0
TNR	7143	broad.mit.edu	37	1	175375611	175375611	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:175375611G>T	uc001gkp.1	-	1	321	c.240C>A	c.(238-240)TCC>TCA	p.S80S	TNR_uc009wwu.1_Silent_p.S80S|TNR_uc010pmz.1_Silent_p.S80S	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	80					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CTAGCCCTGAGGAGCAGAGGT	0.562			NA											39	79					1.90571e-15	4.17366e-15	0.004289	1	0
RPS6KC1	26750	broad.mit.edu	37	1	213415205	213415205	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:213415205G>T	uc010ptr.1	+	11	2545	c.2386G>T	c.(2386-2388)GAT>TAT	p.D796Y	RPS6KC1_uc001hkd.2_Missense_Mutation_p.D784Y|RPS6KC1_uc010pts.1_Missense_Mutation_p.D584Y|RPS6KC1_uc010ptt.1_Missense_Mutation_p.D584Y|RPS6KC1_uc010ptu.1_Missense_Mutation_p.D615Y|RPS6KC1_uc010ptv.1_Missense_Mutation_p.D331Y|RPS6KC1_uc001hke.2_Missense_Mutation_p.D615Y	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	796	Protein kinase 2.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		ACCCAGCTCAGATCCTAAGTT	0.418			NA											54	79					4.88482e-21	1.15578e-20	0.01441	1	0
USH2A	7399	broad.mit.edu	37	1	215956216	215956216	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:215956216C>T	uc001hku.1	-	53	10836	c.10449G>A	c.(10447-10449)GGG>GGA	p.G3483G		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3483	Fibronectin type-III 19.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGAGTCCTCGCCCATAGCTGT	0.443			NA								HNSCC(13;0.011)			8	68					0	0	0.004482	0	0
ESRRG	2104	broad.mit.edu	37	1	216850479	216850479	+	Silent	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:216850479C>A	uc001hkw.1	-	2	577	c.411G>T	c.(409-411)GGG>GGT	p.G137G	ESRRG_uc001hky.1_Silent_p.G114G|ESRRG_uc009xdp.1_Silent_p.G114G|ESRRG_uc001hkz.1_Silent_p.G114G|ESRRG_uc010puc.1_Silent_p.G114G|ESRRG_uc001hla.1_Silent_p.G114G|ESRRG_uc001hlb.1_Silent_p.G114G|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Silent_p.G114G|ESRRG_uc001hld.1_Silent_p.G114G|ESRRG_uc001hkx.1_Silent_p.G142G|ESRRG_uc009xdo.1_Silent_p.G114G|ESRRG_uc001hle.1_Silent_p.G114G	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	137	Nuclear receptor.|NR C4-type.				positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CATAGTGGTACCCAGAAGCGA	0.498			NA											21	117					1.28384e-07	2.2092e-07	0.012319	1	0
RYR2	6262	broad.mit.edu	37	1	237880622	237880622	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:237880622C>A	uc001hyl.1	+	72	10568	c.10448C>A	c.(10447-10449)CCT>CAT	p.P3483H	RYR2_uc010pxz.1_Missense_Mutation_p.P438H	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3483					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATCTGTGCCCCTGGGGACCAG	0.498			NA											21	25					1.28384e-07	2.2092e-07	0.012319	1	0
C10orf114	399726	broad.mit.edu	37	10	21784774	21784774	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:21784774G>T	uc001iqn.3	-	2	636	c.166C>A	c.(166-168)CCG>ACG	p.P56T		NM_001010911	NP_001010911	Q5T4H9	CJ114_HUMAN	hypothetical protein LOC399726	56											0						GAGGCGCCCGGCACCTGCAGG	0.786			NA									OREG0020066	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	8					5.18039e-06	8.52673e-06	0.00308	1	0
ARMC4	55130	broad.mit.edu	37	10	28233185	28233185	+	Missense_Mutation	SNP	C	C	T	rs140569195	byFrequency	TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:28233185C>T	uc009xky.2	-	12	1807	c.1709G>A	c.(1708-1710)CGG>CAG	p.R570Q	ARMC4_uc010qds.1_Missense_Mutation_p.R95Q|ARMC4_uc010qdt.1_Missense_Mutation_p.R262Q|ARMC4_uc001itz.2_Missense_Mutation_p.R570Q|ARMC4_uc010qdu.1_Missense_Mutation_p.R262Q	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	570							binding			ovary(4)|skin(2)	6						CCTCACCACCCGCCGTGCTCT	0.498			NA											12	36					0	0	0.013537	0	0
SVIL	6840	broad.mit.edu	37	10	29824951	29824951	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:29824951C>A	uc001iut.1	-	7	1628	c.875G>T	c.(874-876)GGG>GTG	p.G292V	SVIL_uc001iuu.1_Intron|SVIL_uc009xld.1_Missense_Mutation_p.G292V	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	292					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				AGGTGTGTCCCCTTCGGAATC	0.473			NA									OREG0020098	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	57					9.65021e-13	1.98241e-12	0.010818	1	0
AGAP7	653268	broad.mit.edu	37	10	51465433	51465433	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:51465433G>T	uc001jio.2	-	7	1149	c.1023C>A	c.(1021-1023)TCC>TCA	p.S341S	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	341	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CCATGTCCTTGGATAGGCCAT	0.567			NA											35	565					6.97489e-18	1.55323e-17	0.004878	1	0
USP54	159195	broad.mit.edu	37	10	75289936	75289936	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:75289936C>A	uc001juo.2	-	12	1810	c.1793G>T	c.(1792-1794)GGC>GTC	p.G598V	USP54_uc001juk.2_5'UTR|USP54_uc001jul.2_5'UTR|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Missense_Mutation_p.G598V|USP54_uc010qkl.1_Missense_Mutation_p.G598V	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	598					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					CTGGGTATAGCCACAGTGCTT	0.398	Colon(195;880 2046 8854 25025 38456)		NA											70	106					6.00099e-30	1.44569e-29	0.01441	1	0
MYST4	23522	broad.mit.edu	37	10	76790413	76790413	+	Missense_Mutation	SNP	A	A	G	rs143966521		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:76790413A>G	uc001jwn.1	+	18	6324	c.5831A>G	c.(5830-5832)TAT>TGT	p.Y1944C	MYST4_uc001jwo.1_Missense_Mutation_p.Y1652C|MYST4_uc001jwp.1_Missense_Mutation_p.Y1761C	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1944	Interaction with RUNX1 and RUNX2.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TCACAAATCTATGGGCGCTCC	0.552			NA	T	CREBBP	AML								21	107					0	0	0.012319	0	0
POLR3A	11128	broad.mit.edu	37	10	79745855	79745855	+	Silent	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:79745855G>A	uc001jzn.2	-	22	3058	c.2964C>T	c.(2962-2964)GGC>GGT	p.G988G		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	988					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			TATCATTGATGCCATATTTAT	0.418			NA											52	112					0	0	0.01441	0	0
PKD2L1	9033	broad.mit.edu	37	10	102057200	102057200	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:102057200G>A	uc001kqx.1	-	5	1278	c.895C>T	c.(895-897)CGA>TGA	p.R299*	PKD2L1_uc009xwm.1_Nonsense_Mutation_p.R252*	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	299	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		AACACCACTCGAGTGCCCCTG	0.572			NA											15	74					0	0	0.006122	0	0
DCLRE1A	9937	broad.mit.edu	37	10	115609681	115609681	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:115609681T>C	uc001law.2	-	2	2101	c.1183A>G	c.(1183-1185)ACT>GCT	p.T395A		NM_014881	NP_055696	Q6PJP8	DCR1A_HUMAN	DNA cross-link repair 1A	395					cell division|mitosis	nucleus	hydrolase activity			skin(2)	2				Epithelial(162;0.0157)|all cancers(201;0.0171)		TAAGGCAAAGTACTCTCATTA	0.393			NA						Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					7	75					0	0	0.001984	0	0
STK32C	282974	broad.mit.edu	37	10	134038741	134038741	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr10:134038741C>A	uc001lle.1	-	7	1012	c.872G>T	c.(871-873)GGA>GTA	p.G291V	STK32C_uc001lld.1_Missense_Mutation_p.G174V|STK32C_uc010quu.1_Missense_Mutation_p.G304V|STK32C_uc009ybc.1_Missense_Mutation_p.G174V|STK32C_uc009ybd.1_3'UTR|STK32C_uc001llb.2_Missense_Mutation_p.G62V|STK32C_uc001llc.1_RNA	NM_173575	NP_775846	Q86UX6	ST32C_HUMAN	serine/threonine kinase 32C	291	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|breast(1)	5		all_cancers(35;2.72e-11)|all_epithelial(44;2.33e-08)|Lung NSC(174;0.000855)|all_lung(145;0.00146)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.112)|Melanoma(40;0.124)|Glioma(114;0.203)		Epithelial(32;3.99e-05)|all cancers(32;5.58e-05)|OV - Ovarian serous cystadenocarcinoma(35;9.96e-05)|BRCA - Breast invasive adenocarcinoma(275;0.222)		CCATACCCATCCTCGCAGCAG	0.667			NA											5	14					0.000602214	0.000922467	0.000602	1	0
NLRP6	171389	broad.mit.edu	37	11	280512	280512	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:280512C>A	uc010qvs.1	+	4	778	c.778C>A	c.(778-780)CGC>AGC	p.R260S	NLRP6_uc010qvt.1_Missense_Mutation_p.R260S	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	260	NACHT.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		GTGCCCCGACCGCGGCGCGCC	0.751			NA											3	9					0.004672	0.00687822	0.004672	1	0
OR51B5	282763	broad.mit.edu	37	11	5363838	5363838	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:5363838G>T	uc001map.1	-	1	917	c.917C>A	c.(916-918)ACT>AAT	p.T306N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTATGGGTAGTAAAAAGGTG	0.368			NA											12	44					9.31168e-06	1.49551e-05	0.001855	1	0
CCKBR	887	broad.mit.edu	37	11	6292297	6292297	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:6292297A>T	uc001mcp.2	+	5	1061	c.868A>T	c.(868-870)AGC>TGC	p.S290C	CCKBR_uc001mcq.2_Missense_Mutation_p.S218C|CCKBR_uc001mcr.2_Missense_Mutation_p.S290C|CCKBR_uc001mcs.2_Missense_Mutation_p.S359C|CCKBR_uc001mct.1_RNA	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	290	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TGGCGAAGACAGCGATGGCTG	0.687			NA											13	65					0	0	0.004007	0	0
OR10A3	26496	broad.mit.edu	37	11	7960402	7960402	+	Silent	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:7960402C>A	uc010rbi.1	-	1	666	c.666G>T	c.(664-666)CTG>CTT	p.L222L		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GGATGGCAAACAGAACTCGAA	0.453			NA											8	40					0.00307968	0.00458492	0.00308	1	0
NLRP10	338322	broad.mit.edu	37	11	7981827	7981827	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:7981827G>T	uc001mfv.1	-	2	1349	c.1332C>A	c.(1330-1332)GCC>GCA	p.A444A		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	444	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCAGGAAAGCGGCAAGCCTGG	0.488			NA											19	144					1.22574e-08	2.2248e-08	0.014323	1	0
GALNTL4	374378	broad.mit.edu	37	11	11362424	11362424	+	Missense_Mutation	SNP	T	T	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:11362424T>G	uc001mjo.2	-	7	1641	c.1220A>C	c.(1219-1221)GAA>GCA	p.E407A		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	407	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		CATCCAGACTTCAGCCACCCT	0.572			NA											32	192					0	0	0.008361	0	0
LOC440040	440040	broad.mit.edu	37	11	49805552	49805552	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:49805552G>A	uc010rhy.1	+	3	1227	c.749G>A	c.(748-750)GGC>GAC	p.G250D	LOC440040_uc009ymb.2_Missense_Mutation_p.G250D	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TTCTGTGAGGGCATGACGGTG	0.517			NA											4	75					0	0	0.009096	0	0
OR4C46	119749	broad.mit.edu	37	11	51515432	51515433	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:51515432_51515433CC>AA	uc010ric.1	+	1	151_152	c.151_152CC>AA	c.(151-153)CCA>AAA	p.P51K		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	51	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CACTGCCAGCCCATCACTGGGG	0.45			NA											42	238					0	0	0.004672	0	0
MS4A6A	64231	broad.mit.edu	37	11	59949055	59949055	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:59949055C>A	uc001nor.2	-	2	384	c.146G>T	c.(145-147)GGG>GTG	p.G49V	MS4A6A_uc001noq.2_Missense_Mutation_p.G49V|MS4A6A_uc001nos.3_Missense_Mutation_p.G77V|MS4A6A_uc009ymv.2_Missense_Mutation_p.G49V|MS4A6A_uc001not.2_Missense_Mutation_p.G49V|MS4A6A_uc010rla.1_Missense_Mutation_p.G77V|MS4A6A_uc010rlb.1_Missense_Mutation_p.G49V	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	49	Helical; (Potential).					integral to membrane	receptor activity				0						TAGATTTACCCCAATAACTTT	0.478			NA											14	100					2.61681e-11	5.13671e-11	0.00245	1	0
LRP5	4041	broad.mit.edu	37	11	68191071	68191071	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:68191071A>G	uc001ont.2	+	14	3217	c.3142A>G	c.(3142-3144)ATC>GTC	p.I1048V	LRP5_uc009ysg.2_Missense_Mutation_p.I458V	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1048	LDL-receptor class B 17.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CACCAATACCATCAACGTCCA	0.637			NA											12	104					0	0	0.013537	0	0
ODZ4	26011	broad.mit.edu	37	11	78433921	78433921	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:78433921G>A	uc001ozl.3	-	24	4055	c.3592C>T	c.(3592-3594)CAG>TAG	p.Q1198*		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1198	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGAGGCTGCTGAGACACAAAC	0.562			NA											10	37					0	0	0.006214	0	0
ATM	472	broad.mit.edu	37	11	108123623	108123623	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:108123623C>T	uc001pkb.1	+	12	2267	c.1882C>T	c.(1882-1884)CAA>TAA	p.Q628*	ATM_uc009yxr.1_Nonsense_Mutation_p.Q628*	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	628					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GAATTTTTTCCAAAGCGTGCC	0.318			NA	D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			7	59					0	0	0.00308	0	0
ATM	472	broad.mit.edu	37	11	108205768	108205768	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:108205768G>T	uc001pkb.1	+	55	8468	c.8083G>T	c.(8083-8085)GGT>TGT	p.G2695C	ATM_uc009yxr.1_Missense_Mutation_p.G2695C|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.G1347C	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2695			G -> A (in T-prolymphocytic leukemia and B-cell chronic lymphocytic leukemia).		cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding	p.G2695A(2)		haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CTTAGCAGGAGGTGTAAATTT	0.398			NA	D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			31	58					3.00307e-07	5.06887e-07	0.008361	1	0
ZC3H12C	85463	broad.mit.edu	37	11	110035384	110035384	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr11:110035384C>T	uc009yxw.2	+	6	1625	c.1574C>T	c.(1573-1575)CCA>CTA	p.P525L	ZC3H12C_uc010rwc.1_Missense_Mutation_p.P526L|ZC3H12C_uc010rwd.1_Missense_Mutation_p.P526L|ZC3H12C_uc001pkr.3_Missense_Mutation_p.P494L	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	525							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		GTTAGCATCCCAGCTACTTCT	0.448			NA											27	63					0	0	0.004656	0	0
LRTM2	654429	broad.mit.edu	37	12	1943635	1943635	+	Silent	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:1943635G>A	uc001qjt.2	+	5	1667	c.861G>A	c.(859-861)CCG>CCA	p.P287P	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Silent_p.P287P|LRTM2_uc010sdx.1_Silent_p.P287P|LRTM2_uc001qjv.2_Silent_p.P49P	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	287	Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			AGCCGGAGCCGGAGCCCAGCA	0.677			NA											11	35					0	0	0.013537	0	0
ITFG2	55846	broad.mit.edu	37	12	2932973	2932973	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:2932973C>T	uc001qlb.1	+	11	1168	c.1104C>T	c.(1102-1104)TGC>TGT	p.C368C	ITFG2_uc010seb.1_Silent_p.C191C|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	368											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			ACAGCCCCTGCCTCGTATATG	0.552			NA											19	238					0	0	0.007413	0	0
CD163L1	283316	broad.mit.edu	37	12	7548699	7548699	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:7548699A>G	uc001qsy.2	-	8	2068	c.2042T>C	c.(2041-2043)ATC>ACC	p.I681T	CD163L1_uc010sge.1_Missense_Mutation_p.I691T	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	681	SRCR 6.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						ACCAGAACAGATCACTCCAAC	0.443			NA											4	44					0	0	0.001168	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028751	13028751	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:13028751G>C	uc010sho.1	+	1	341	c.319G>C	c.(319-321)GGC>CGC	p.G107R		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGTGTTTGACGGCATCCCACC	0.612			NA											4	6					0	0	0.009096	0	0
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:25398284C>A	uc001rgp.1	-	2	216	c.35G>T	c.(34-36)GGT>GTT	p.G12V	KRAS_uc001rgq.1_Missense_Mutation_p.G12V|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12N(6)|p.G12G(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCCTACGCCACCAGCTCCAAC	0.348	Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			8	19					0.00448238	0.00663593	0.004482	1	0
OVCH1	341350	broad.mit.edu	37	12	29608259	29608259	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:29608259C>A	uc001rix.1	-	20	2360	c.2360G>T	c.(2359-2361)GGC>GTC	p.G787V		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	787	Peptidase S1 2.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					CTGGACACAGCCAGCTCCCCA	0.448			NA											27	78					2.12542e-12	4.26693e-12	0.00632	1	0
C12orf35	55196	broad.mit.edu	37	12	32135902	32135902	+	Silent	SNP	A	A	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:32135902A>G	uc001rks.2	+	4	2427	c.2013A>G	c.(2011-2013)GAA>GAG	p.E671E		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	671										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			GTTCCATGGAAGTGCTAGCAA	0.428			NA											10	37					0	0	0.013537	0	0
CCDC41	51134	broad.mit.edu	37	12	94806266	94806266	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:94806266T>C	uc001tdd.2	-	3	587	c.1A>G	c.(1-3)ATG>GTG	p.M1V	CCDC41_uc001tde.2_Missense_Mutation_p.M1V|CCDC41_uc009zsw.1_Intron|CCDC41_uc001tdf.2_Missense_Mutation_p.M1V	NM_016122	NP_057206	Q9Y592	CCD41_HUMAN	NY-REN-58 antigen	Error:Variant_position_missing_in_Q9Y592_after_alignment											0						CTGACAACCATGTAAAAATAA	0.393			NA											19	57					0	0	0.012319	0	0
CRY1	1407	broad.mit.edu	37	12	107391114	107391114	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:107391114C>T	uc001tmi.3	-	10	2402	c.1543G>A	c.(1543-1545)GGA>AGA	p.G515R		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	515					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						GCAGAATATCCCATGAAGCCT	0.333			NA											18	276					0	0	0.012319	0	0
SELPLG	6404	broad.mit.edu	37	12	109017390	109017390	+	Missense_Mutation	SNP	G	G	T	rs113452057		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:109017390G>T	uc001tni.2	-	2	854	c.694C>A	c.(694-696)CAG>AAG	p.Q232K	SELPLG_uc001tnh.2_Missense_Mutation_p.Q222K|SELPLG_uc010sxe.1_Missense_Mutation_p.Q248K	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	232	12 X 10 AA tandem repeats.|Extracellular (Potential).|10.				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						GCAGTGGTCTGTGCCTCCATG	0.617			NA											31	166					2.68265e-12	5.34513e-12	0.013726	1	0
FOXN4	121643	broad.mit.edu	37	12	109719546	109719546	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:109719546C>T	uc001toe.3	-	9	1065	c.960G>A	c.(958-960)CCG>CCA	p.P320P	FOXN4_uc009zvg.2_Silent_p.P117P|FOXN4_uc001tof.3_Silent_p.P140P	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	320					axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						CTGGTTCCCCCGGTTTGCCGG	0.672			NA											4	25					0	0	0.009096	0	0
LCP1	3936	broad.mit.edu	37	13	46716467	46716467	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr13:46716467G>A	uc001vaz.3	-	13	1588	c.1462C>T	c.(1462-1464)CGC>TGC	p.R488C	LCP1_uc010ack.2_Missense_Mutation_p.R57C|LCP1_uc001vay.3_Missense_Mutation_p.R85C|LCP1_uc001vba.3_Missense_Mutation_p.R488C	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	488	Actin-binding 2.|CH 3.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		GTGAGAGTGCGGTTTCCTTCA	0.413			NA	T	BCL6	NHL 								6	118					0	0	0.001168	0	0
RAB20	55647	broad.mit.edu	37	13	111176305	111176305	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr13:111176305C>A	uc001vqy.2	-	2	617	c.412G>T	c.(412-414)GGG>TGG	p.G138W		NM_017817	NP_060287	Q9NX57	RAB20_HUMAN	RAB20, member RAS oncogene family	138					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	all_cancers(4;1.54e-11)|all_epithelial(4;1.22e-06)|all_lung(23;1e-05)|Lung NSC(43;0.000453)|Colorectal(4;0.00323)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.197)			ACACGGTCCCCAGCGTCCATA	0.572			NA											8	44					0.000157383	0.000243898	0.00308	1	0
TEP1	7011	broad.mit.edu	37	14	20854332	20854332	+	Nonsense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr14:20854332C>A	uc001vxe.2	-	20	2924	c.2884G>T	c.(2884-2886)GAG>TAG	p.E962*	TEP1_uc010ahk.2_Nonsense_Mutation_p.E312*|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Nonsense_Mutation_p.E854*	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	962					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TTCTCCACCTCCCCAAGGCAC	0.552			NA											19	129					5.3912e-06	8.81895e-06	0.006122	1	0
OR10G2	26534	broad.mit.edu	37	14	22102089	22102089	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr14:22102089G>T	uc010tmc.1	-	1	910	c.910C>A	c.(910-912)CTG>ATG	p.L304M		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		ATCCTCTTCAGGGCAGACTTC	0.473			NA											21	143					2.44723e-14	5.22997e-14	0.004656	1	0
FAM179B	23116	broad.mit.edu	37	14	45433416	45433416	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr14:45433416G>A	uc001wvv.2	+	1	2001	c.1792G>A	c.(1792-1794)GGG>AGG	p.G598R	FAM179B_uc001wvw.2_Missense_Mutation_p.G598R|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Missense_Mutation_p.G598R|FAM179B_uc001wvu.2_Missense_Mutation_p.G598R	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	598							binding			skin(2)|upper_aerodigestive_tract(1)	3						ATCTTCTGCCGGGGGTAGGTC	0.512			NA											42	65					0	0	0.010771	0	0
SYT16	83851	broad.mit.edu	37	14	62567300	62567300	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr14:62567300G>T	uc001xfu.1	+	6	2010	c.1813G>T	c.(1813-1815)GAG>TAG	p.E605*	SYT16_uc010tse.1_Nonsense_Mutation_p.E163*	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	605	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GAAGCGTAAAGAGATGATTGG	0.488			NA											7	30					0.00307968	0.00458492	0.00308	1	0
PAPLN	89932	broad.mit.edu	37	14	73720461	73720461	+	Splice_Site	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr14:73720461G>T	uc010ttx.1	+	11	1258	c.1095_splice	c.e11-1	p.R365_splice	PAPLN_uc001xnw.3_Splice_Site_p.R338_splice|PAPLN_uc010arl.2_Splice_Site|PAPLN_uc010ttw.1_Splice_Site|PAPLN_uc010tty.1_Splice_Site_p.R365_splice	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin							proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CCTCCTGCCAGCTGGAAGGCA	0.662			NA											13	41					0.00244969	0.00368846	0.00245	1	0
SLC24A4	123041	broad.mit.edu	37	14	92915520	92915520	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr14:92915520C>T	uc001yak.2	+	10	813	c.789C>T	c.(787-789)GAC>GAT	p.D263D	SLC24A4_uc001yai.2_Silent_p.D216D|SLC24A4_uc010twm.1_Intron|SLC24A4_uc001yaj.2_Intron|SLC24A4_uc010auj.2_Intron|SLC24A4_uc010twn.1_Silent_p.D36D|uc001yal.1_RNA	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	280	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		ATTTCTATGACGGTAGCTATG	0.493	NSCLC(10;315 435 10383 28450 38798)		NA											6	54					0	0	0.001984	0	0
BCL11B	64919	broad.mit.edu	37	14	99640726	99640726	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr14:99640726C>A	uc001yga.2	-	4	2714	c.2447G>T	c.(2446-2448)CGG>CTG	p.R816L	BCL11B_uc001ygb.2_Missense_Mutation_p.R745L	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	816	C2H2-type 4.					nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GGTGTGGCTCCGCCGGTGCAC	0.597			NA	T	TLX3	T-ALL								7	22					0.000157383	0.000243898	0.00308	1	0
C15orf2	23742	broad.mit.edu	37	15	24924482	24924482	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr15:24924482G>T	uc001ywo.2	+	1	3942	c.3468G>T	c.(3466-3468)CCG>CCT	p.P1156P		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1156					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TCCAACTTCCGTAAGAGCACC	0.423			NA											7	51					5.18039e-06	8.52673e-06	0.00308	1	0
GABRA5	2558	broad.mit.edu	37	15	27160003	27160003	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr15:27160003C>A	uc001zbd.1	+	8	890	c.551C>A	c.(550-552)GCG>GAG	p.A184E	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	184	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CCGATGGATGCGCACGCTTGC	0.443			NA											12	59					9.31168e-06	1.49551e-05	0.001855	1	0
HERC2	8924	broad.mit.edu	37	15	28478865	28478865	+	Silent	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr15:28478865G>A	uc001zbj.2	-	28	4402	c.4296C>T	c.(4294-4296)CCC>CCT	p.P1432P		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1432					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCTCTTCCACGGGATGCTCGG	0.458			NA											13	71					0	0	0.00245	0	0
TJP1	7082	broad.mit.edu	37	15	30092877	30092877	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr15:30092877C>A	uc001zcr.2	-	2	531	c.56G>T	c.(55-57)TGG>TTG	p.W19L	TJP1_uc010azl.2_Missense_Mutation_p.W7L|TJP1_uc001zcq.2_Missense_Mutation_p.W23L|TJP1_uc001zcs.2_Missense_Mutation_p.W19L	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	19					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		ATGTTGTTCCCATATAGCTGT	0.368	Melanoma(77;681 1843 6309 6570)		NA											5	95					1.024e-07	1.79709e-07	0.000602	1	0
LPCAT4	254531	broad.mit.edu	37	15	34653713	34653713	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr15:34653713T>C	uc001zig.2	-	11	1125	c.1031A>G	c.(1030-1032)GAC>GGC	p.D344G		NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	344					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						TGCCCCAGCGTCCACATAGCC	0.577			NA											7	41					0	0	0.004482	0	0
WDR90	197335	broad.mit.edu	37	16	716792	716793	+	Splice_Site	DNP	GG	GG	TT			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr16:716792_716793GG>TT	uc002cii.1	+	39	5058	c.5004_splice	c.e39+1	p.Q1668_splice	WDR90_uc002cij.1_Intron|WDR90_uc002cil.1_Splice_Site|WDR90_uc002cin.1_Splice_Site_p.Q283_splice|WDR90_uc010uul.1_Splice_Site_p.Q219_splice|WDR90_uc002cio.1_Splice_Site_p.Q267_splice|WDR90_uc010bqx.1_Splice_Site_p.Q219_splice|RHOT2_uc010uum.1_5'Flank|RHOT2_uc002cip.2_5'Flank|RHOT2_uc002ciq.2_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90											ovary(1)	1		Hepatocellular(780;0.0218)				GCCAGAAGCAGGTACACGCAGC	0.658			NA											24	54					0	0	0.004672	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1818201	1818201	+	Silent	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr16:1818201C>A	uc002cmk.2	+	30	3681	c.3561C>A	c.(3559-3561)GCC>GCA	p.A1187A	MAPK8IP3_uc002cml.2_Silent_p.A1181A|MAPK8IP3_uc010uvl.1_Silent_p.A1188A	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	1187					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						TCCCTGCAGCCAATAAGACAT	0.657			NA											5	95					0.00116845	0.00177953	0.001168	1	0
ABCC1	4363	broad.mit.edu	37	16	16218667	16218667	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr16:16218667G>T	uc010bvi.2	+	25	3787	c.3612G>T	c.(3610-3612)GAG>GAT	p.E1204D	ABCC1_uc010bvj.2_Missense_Mutation_p.E1145D|ABCC1_uc010bvk.2_Missense_Mutation_p.E1148D|ABCC1_uc010bvl.2_Missense_Mutation_p.E1204D|ABCC1_uc010bvm.2_Missense_Mutation_p.E1089D|ABCC1_uc002del.3_Missense_Mutation_p.E1098D	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	1204	ABC transmembrane type-1 2.|Helical; Name=16.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TGCGGCTGGAGTGTGTGGGCA	0.582			NA											20	52					4.96729e-08	8.83444e-08	0.008871	1	0
CD19	930	broad.mit.edu	37	16	28947911	28947911	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr16:28947911C>T	uc002drs.2	+	7	1136	c.1074C>T	c.(1072-1074)ACC>ACT	p.T358T	uc010vct.1_Intron|CD19_uc010byo.1_Silent_p.T358T	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	358	Cytoplasmic (Potential).				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity			ovary(2)|central_nervous_system(1)	3						CCACACCCACCTCAGGCCTCG	0.652			NA											7	26					0	0	0.00308	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77369710	77369710	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr16:77369710C>A	uc002ffc.3	-	12	2221	c.1802G>T	c.(1801-1803)TGT>TTT	p.C601F	ADAMTS18_uc010chc.1_Missense_Mutation_p.C189F|ADAMTS18_uc002ffe.1_Missense_Mutation_p.C297F	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	601	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGTCCGGGAACATTCTGACCA	0.562			NA											88	138					4.64247e-43	1.18294e-42	0.01441	1	0
RABEP1	9135	broad.mit.edu	37	17	5235390	5235390	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr17:5235390G>T	uc002gbm.3	+	3	534	c.310G>T	c.(310-312)GAT>TAT	p.D104Y	RABEP1_uc010clc.1_Missense_Mutation_p.D104Y|RABEP1_uc010cld.1_Missense_Mutation_p.D61Y|RABEP1_uc010vsw.1_Missense_Mutation_p.D61Y|RABEP1_uc002gbl.3_Missense_Mutation_p.D104Y|RABEP1_uc002gbj.2_Missense_Mutation_p.D104Y|RABEP1_uc002gbk.2_Missense_Mutation_p.D104Y	NM_004703	NP_004694	Q15276	RABE1_HUMAN	rabaptin, RAB GTPase binding effector protein 1	104	Potential.				apoptosis|cellular membrane fusion|endocytosis|protein transport	centrosome|early endosome|endocytic vesicle|recycling endosome	growth factor activity|GTPase activator activity|protein homodimerization activity			large_intestine(1)|ovary(1)	2						AGAAGCTATAGATGAAGTGAA	0.418			NA											15	51					2.32078e-09	4.33104e-09	0.003163	1	0
DHRS7C	201140	broad.mit.edu	37	17	9694562	9694562	+	Silent	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr17:9694562G>A	uc010vvb.1	-	1	40	c.40C>T	c.(40-42)CTG>TTG	p.L14L	DHRS7C_uc010cof.2_Silent_p.L14L	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	14						extracellular region	binding|oxidoreductase activity				0						CTGATTCCCAGCAGCAGCAGG	0.542			NA											5	9					0	0	0.001168	0	0
GLP2R	9340	broad.mit.edu	37	17	9792853	9792853	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr17:9792853A>G	uc002gmd.1	+	13	1493	c.1493A>G	c.(1492-1494)AAC>AGC	p.N498S		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	498	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	CCCTCACTTAACAGTGGGCGG	0.622			NA											8	50					0	0	0.006214	0	0
GPR142	350383	broad.mit.edu	37	17	72368582	72368582	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr17:72368582T>A	uc010wqy.1	+	4	1232	c.1232T>A	c.(1231-1233)TTC>TAC	p.F411Y	GPR142_uc010wqx.1_Missense_Mutation_p.F323Y	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	411	Helical; Name=7; (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GCAGCCAACTTCGGCCTCTAC	0.607			NA											23	61					0	0	0.003954	0	0
TMC6	11322	broad.mit.edu	37	17	76117707	76117707	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr17:76117707C>G	uc002juj.1	-	10	1439	c.1313G>C	c.(1312-1314)TGG>TCG	p.W438S	TMC6_uc002jui.1_Missense_Mutation_p.W77S|TMC6_uc010dhf.1_Missense_Mutation_p.W271S|TMC6_uc002juk.2_Missense_Mutation_p.W438S|TMC6_uc010dhg.1_Intron|TMC6_uc002jul.1_Missense_Mutation_p.W438S|TMC6_uc002jum.3_Missense_Mutation_p.W229S|TMC6_uc002jun.3_Missense_Mutation_p.W438S|TMC6_uc002juo.2_Missense_Mutation_p.W211S	NM_007267	NP_009198	Q7Z403	TMC6_HUMAN	transmembrane channel-like 6	438	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			ACACAGCAGCCACACAAGCCC	0.721			NA							Epidermodysplasia_Verruciformis_Familial_Clustering_of				3	16					0	0	0.001168	0	0
LAMA1	284217	broad.mit.edu	37	18	6959354	6959354	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr18:6959354C>A	uc002knm.2	-	54	7858	c.7764G>T	c.(7762-7764)TTG>TTT	p.L2588F	LAMA1_uc002knk.2_5'Flank|LAMA1_uc002knl.2_Missense_Mutation_p.L41F|LAMA1_uc010wzj.1_Missense_Mutation_p.L2064F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2588	Laminin G-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATTCCTGACCAAGGAGATGG	0.582			NA											20	90					8.10497e-08	1.43188e-07	0.010504	1	0
SERPINB12	89777	broad.mit.edu	37	18	61233938	61233938	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr18:61233938G>T	uc010xen.1	+	7	912	c.912G>T	c.(910-912)CTG>CTT	p.L304L	SERPINB12_uc010xeo.1_Silent_p.L324L	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	304					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						GGTTCACCCTGGAAGACAGCT	0.458			NA											77	179					4.03997e-35	9.91289e-35	0.01441	1	0
ZNF560	147741	broad.mit.edu	37	19	9577542	9577542	+	Missense_Mutation	SNP	C	C	T	rs148650284		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:9577542C>T	uc002mlp.1	-	10	2291	c.2081G>A	c.(2080-2082)CGA>CAA	p.R694Q	ZNF560_uc010dwr.1_Missense_Mutation_p.R588Q	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	694					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CATGGAATTTCGAAAGGAATT	0.378			NA											39	153					0	0	0.00623	0	0
CACNA1A	773	broad.mit.edu	37	19	13339571	13339571	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:13339571C>T	uc010dze.2	-	37	5806	c.5570G>A	c.(5569-5571)CGA>CAA	p.R1857Q	CACNA1A_uc010xnd.1_Intron|CACNA1A_uc002mwx.3_Intron|CACNA1A_uc010dzc.2_Missense_Mutation_p.R1382Q|CACNA1A_uc002mwy.3_Intron|CACNA1A_uc002mwv.3_Missense_Mutation_p.R373Q	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1857	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AGATATTACTCGTAATAAACT	0.478			NA											18	30					0	0	0.00333	0	0
HCST	10870	broad.mit.edu	37	19	36393396	36393397	+	Translation_Start_Site	DNP	GG	GG	CA			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:36393396_36393397GG>CA	uc002ocl.1	+	1	15_16	c.-99_-98GG>CA	c.(-101--96)AGGGTG>AGCATG		NFKBID_uc002oci.1_5'Flank|NFKBID_uc002ocj.1_5'Flank|HCST_uc002ock.1_Translation_Start_Site	NM_014266	NP_055081	Q9UBK5	HCST_HUMAN	hematopoietic cell signal transducer isoform 1						regulation of immune response	integral to membrane|plasma membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ACACCAGCAGGGTGACATCCGC	0.381			NA											19	99					0	0	0.004672	0	0
GGN	199720	broad.mit.edu	37	19	38876275	38876275	+	Missense_Mutation	SNP	A	A	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:38876275A>C	uc002oij.1	-	3	1762	c.1627T>G	c.(1627-1629)TTG>GTG	p.L543V	GGN_uc002oik.1_Intron|GGN_uc010efy.1_Intron	NM_152657	NP_689870	Q86UU5	GGN_HUMAN	gametogenetin	543	Interactions with ZNF403/GGNBP2 and OAZ3 (By similarity).				cell differentiation|multicellular organismal development|spermatogenesis						0	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TCTCCATGCAAGCCATCCTTA	0.542			NA											6	52					0	0	0.001984	0	0
RYR1	6261	broad.mit.edu	37	19	38976748	38976748	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:38976748C>G	uc002oit.2	+	34	5583	c.5453C>G	c.(5452-5454)GCG>GGG	p.A1818G	RYR1_uc002oiu.2_Missense_Mutation_p.A1818G	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1818	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGGGGGAGGCGGTGCGCGAC	0.706			NA											35	74					0	0	0.003755	0	0
CYP2S1	29785	broad.mit.edu	37	19	41703808	41703808	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:41703808G>T	uc002opw.2	+	3	523	c.468G>T	c.(466-468)CTG>CTT	p.L156L	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Intron	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	156					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						CCCGGTGTCTGGTGGAGACAT	0.632			NA											6	33					4.096e-09	7.59049e-09	0.001168	1	0
SHANK1	50944	broad.mit.edu	37	19	51215303	51215303	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:51215303C>T	uc002psx.1	-	6	880	c.861G>A	c.(859-861)ACG>ACA	p.T287T		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	287	ANK 3.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CCACCATGGCCGTGTGGAACA	0.617			NA											5	56					0	0	0.000602	0	0
ZNF160	90338	broad.mit.edu	37	19	53572754	53572754	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:53572754C>G	uc010eqk.2	-	7	1449	c.1033G>C	c.(1033-1035)GAG>CAG	p.E345Q	ZNF160_uc002qaq.3_Missense_Mutation_p.E345Q|ZNF160_uc002qar.3_Missense_Mutation_p.E345Q	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	345	C2H2-type 4.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TTTCCACACTCATTACACTTG	0.403			NA											9	75					0	0	0.004482	0	0
ZIM3	114026	broad.mit.edu	37	19	57647012	57647012	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:57647012G>T	uc002qnz.1	-	5	1079	c.693C>A	c.(691-693)GCC>GCA	p.A231A		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	231	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCTGCTTGTAGGCATTTCCAC	0.408			NA											28	136					1.75199e-13	3.71421e-13	0.007291	1	0
ZNF547	284306	broad.mit.edu	37	19	57883173	57883174	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:57883173_57883174GG>TT	uc002qol.2	+	3	241_242	c.48_49GG>TT	c.(46-51)GTGGCC>GTTTCC	p.A17S	ZNF547_uc010ygx.1_Missense_Mutation_p.A17S	NM_173631	NP_775902	Q8IVP9	ZN547_HUMAN	zinc finger protein 547	17	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTGAAGACGTGGCCATATATTT	0.431			NA											35	226					0	0	0.004672	0	0
KIF3C	3797	broad.mit.edu	37	2	26151869	26151869	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:26151869G>T	uc002rgu.2	-	8	3017	c.2360C>A	c.(2359-2361)GCA>GAA	p.A787E	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Missense_Mutation_p.A785E	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	787	Globular (Potential).				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGCCACTGTTGCAGGGCGCAG	0.622			NA											12	95					1.99824e-07	3.41634e-07	0.00499	1	0
THUMPD2	80745	broad.mit.edu	37	2	39988520	39988520	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:39988520C>A	uc002rru.2	-	6	879	c.842G>T	c.(841-843)GGA>GTA	p.G281V	THUMPD2_uc002rrv.2_RNA|THUMPD2_uc010ynt.1_Missense_Mutation_p.G172V|THUMPD2_uc010ynu.1_3'UTR	NM_025264	NP_079540	Q9BTF0	THUM2_HUMAN	THUMP domain containing 2	281							methyltransferase activity			skin(1)	1		all_hematologic(82;0.248)				AGATCGCAGTCCAGCTGTCTT	0.363			NA											25	233					1.12875e-08	2.06289e-08	0.00632	1	0
CNGA3	1261	broad.mit.edu	37	2	99012411	99012411	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:99012411G>C	uc002syt.2	+	8	1195	c.778G>C	c.(778-780)GAC>CAC	p.D260H	CNGA3_uc002syu.2_Missense_Mutation_p.D242H|CNGA3_uc010fij.2_Missense_Mutation_p.D264H	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	260			D -> N (in ACHM2).		signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GGTCCCCACCGACCTGGCTTA	0.517			NA											12	76					0	0	0.00245	0	0
TMEM177	80775	broad.mit.edu	37	2	120438630	120438630	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:120438630G>T	uc010flg.1	+	2	674	c.201G>T	c.(199-201)GAG>GAT	p.E67D	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Missense_Mutation_p.E67D|TMEM177_uc002tmd.2_Missense_Mutation_p.E67D|TMEM177_uc010flh.2_Missense_Mutation_p.E67D	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	67						integral to membrane				ovary(1)	1	Colorectal(110;0.196)					TCTTCCAAGAGGTGCTACAGG	0.592			NA											65	150					1.34159e-35	3.32264e-35	0.01441	1	0
WDR33	55339	broad.mit.edu	37	2	128481960	128481960	+	Silent	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:128481960C>A	uc002tpg.1	-	11	1326	c.1143G>T	c.(1141-1143)CTG>CTT	p.L381L		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	381	WD 7.				postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		GATGCCAAGCCAGACTCCAGA	0.448			NA											13	87					1.5842e-08	2.85587e-08	0.001855	1	0
SLC4A10	57282	broad.mit.edu	37	2	162807357	162807357	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:162807357A>T	uc002ubx.3	+	19	2724	c.2540A>T	c.(2539-2541)AAG>ATG	p.K847M	SLC4A10_uc002uby.3_Missense_Mutation_p.K817M|SLC4A10_uc010zcs.1_Missense_Mutation_p.K828M	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	847	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						CATAAGCTAAAGGTATATTTT	0.308			NA											6	13					0	0	0.001984	0	0
XIRP2	129446	broad.mit.edu	37	2	167992572	167992573	+	Splice_Site	DNP	GG	GG	TT			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:167992572_167992573GG>TT	uc002udx.2	+	2	580	c.562_splice	c.e2+1	p.A188_splice	XIRP2_uc010fpn.2_Splice_Site_p.A188_splice|XIRP2_uc010fpo.2_Splice_Site_p.A188_splice|XIRP2_uc010fpp.2_Splice_Site_p.A188_splice|XIRP2_uc002udy.2_Splice_Site_p.A13_splice	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1						actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CATCTTTGAAGGTTAGCATAAC	0.366			NA											5	54					0	0	0.004672	0	0
DNAH7	56171	broad.mit.edu	37	2	196636407	196636407	+	Missense_Mutation	SNP	C	C	A	rs113133988		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:196636407C>A	uc002utj.3	-	61	11511	c.11410G>T	c.(11410-11412)GTA>TTA	p.V3804L	DNAH7_uc002uti.3_Missense_Mutation_p.V287L	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3804					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGAATATTTACGCACGAATCT	0.318			NA											21	138					1.10513e-12	2.25277e-12	0.014323	1	0
BOLL	66037	broad.mit.edu	37	2	198646540	198646541	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:198646540_198646541GG>TT	uc002uus.2	-	2	344_345	c.34_35CC>AA	c.(34-36)CCT>AAT	p.P12N	BOLL_uc002uur.2_Missense_Mutation_p.P18N|BOLL_uc002uut.2_Missense_Mutation_p.P24N|BOLL_uc010zha.1_Translation_Start_Site|BOLL_uc002uuu.1_Missense_Mutation_p.P18N	NM_033030	NP_149019	Q8N9W6	BOLL_HUMAN	boule isoform 2	12					cell differentiation|meiosis|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm	nucleotide binding|protein binding|RNA binding|translation activator activity			ovary(2)	2						AGGTGACACAGGATTAGGGGAT	0.396			NA											17	104					0	0	0.004672	0	0
SP100	6672	broad.mit.edu	37	2	231327148	231327148	+	Splice_Site	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr2:231327148A>T	uc002vqt.2	+	10	1115	c.974_splice	c.e10-2	p.V325_splice	SP100_uc002vqs.2_Splice_Site_p.V325_splice|SP100_uc002vqu.1_Splice_Site_p.V325_splice|SP100_uc010zmb.1_Splice_Site_p.V325_splice|SP100_uc002vqq.1_Splice_Site_p.V325_splice|SP100_uc002vqr.1_Splice_Site_p.V300_splice|SP100_uc010zmc.1_Splice_Site_p.V300_splice|SP100_uc002vqv.1_Splice_Site_p.V289_splice	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2						DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TCCTTTGTGCAGTCATCAGCA	0.498			NA											16	51					0	0	0.00499	0	0
FRG1B	284802	broad.mit.edu	37	20	29614328	29614328	+	Splice_Site	SNP	G	G	A	rs137860963	by1000genomes	TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr20:29614328G>A	uc010ztk.1	+	1	67	c.-6_splice	c.e1+1		FRG1B_uc002wvm.1_Splice_Site|FRG1B_uc010ztj.1_Splice_Site|FRG1B_uc010gdr.1_Splice_Site					RecName: Full=Protein FRG1B;												0						TGATACGTTGGTGAGTCAGTT	0.219			NA											5	59					0	0	0.000602	0	0
SLC32A1	140679	broad.mit.edu	37	20	37356236	37356236	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr20:37356236G>T	uc002xjc.2	+	2	795	c.532G>T	c.(532-534)GAG>TAG	p.E178*		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	178	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	TGAAGACGGCGAGGTGGTGCG	0.637			NA											7	37					1.06961e-07	1.86479e-07	0.00308	1	0
PLCG1	5335	broad.mit.edu	37	20	39788290	39788290	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr20:39788290C>T	uc002xjp.1	+	2	383	c.262C>T	c.(262-264)CGG>TGG	p.R88W	PLCG1_uc002xjo.1_Missense_Mutation_p.R88W	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	88	PH 1.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				GAAGACCTCACGGGACTTTGA	0.512			NA											12	49					0	0	0.010729	0	0
PREX1	57580	broad.mit.edu	37	20	47296209	47296209	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr20:47296209G>C	uc002xtw.1	-	12	1542	c.1519C>G	c.(1519-1521)CTG>GTG	p.L507V		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	507					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			ATGTCCTCCAGCTCACTTCGG	0.592			NA											25	70					0	0	0.007291	0	0
CYP24A1	1591	broad.mit.edu	37	20	52782307	52782307	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr20:52782307C>A	uc002xwv.2	-	5	1104	c.706G>T	c.(706-708)GTG>TTG	p.V236L	CYP24A1_uc002xwu.1_Missense_Mutation_p.V94L|CYP24A1_uc002xww.2_Missense_Mutation_p.V236L	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	236					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	ATGAAGTTCACAGCTTCATCC	0.383			NA											25	63					5.61819e-17	1.24068e-16	0.005443	1	0
GATA5	140628	broad.mit.edu	37	20	61039900	61039900	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr20:61039900A>T	uc002ycx.1	-	7	1248	c.1186T>A	c.(1186-1188)TTG>ATG	p.L396M		NM_080473	NP_536721	Q9BWX5	GATA5_HUMAN	GATA binding protein 5	396					blood coagulation|intestinal epithelial cell differentiation|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding				0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;3.08e-06)			ACCTAGGCCAAGGCCAGCGCA	0.662			NA											8	50					0	0	0.006214	0	0
KCNQ2	3785	broad.mit.edu	37	20	62046267	62046267	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr20:62046267T>A	uc002yey.1	-	13	1691	c.1514A>T	c.(1513-1515)CAG>CTG	p.Q505L	KCNQ2_uc002yez.1_Missense_Mutation_p.Q475L|KCNQ2_uc002yfa.1_Missense_Mutation_p.Q487L|KCNQ2_uc002yfb.1_Missense_Mutation_p.Q477L	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	505	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	TTCTGAGTTCTGCCGTGACGC	0.672			NA											35	64					0	0	0.00623	0	0
OR11H1	81061	broad.mit.edu	37	22	16449670	16449670	+	Silent	SNP	G	G	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr22:16449670G>C	uc011agd.1	-	1	135	c.135C>G	c.(133-135)CTC>CTG	p.L45L		NM_001005239	NP_001005239	Q8NG94	O11H1_HUMAN	olfactory receptor, family 11, subfamily H,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.208)		Kidney(3;0.00216)|KIRC - Kidney renal clear cell carcinoma(3;0.00244)|Lung(27;0.0724)|COAD - Colon adenocarcinoma(3;0.211)		TTGTAGTAAAGAGTGAGAAGA	0.428			NA											10	170					0	0	0.00499	0	0
SYNGR1	9145	broad.mit.edu	37	22	39770447	39770447	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr22:39770447G>T	uc003axq.3	+	2	288	c.226G>T	c.(226-228)GTG>TTG	p.V76L	SYNGR1_uc003axo.3_Missense_Mutation_p.V76L|SYNGR1_uc003axp.3_Silent_p.A6A|TAB1_uc003axr.2_5'UTR|SYNGR1_uc003axs.3_Missense_Mutation_p.V77L	NM_004711	NP_004702	O43759	SNG1_HUMAN	synaptogyrin 1 isoform 1a	76	Helical; (Potential).|MARVEL.				regulation of long-term neuronal synaptic plasticity|regulation of short-term neuronal synaptic plasticity	cell junction|integral to plasma membrane|melanosome					0	Melanoma(58;0.04)					GGCCGTGGGCGTGCTCGCCTT	0.627			NA											8	56					0.000157383	0.000243898	0.00308	1	0
SETD5	55209	broad.mit.edu	37	3	9488802	9488802	+	Silent	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr3:9488802G>A	uc003brt.2	+	14	2028	c.1593G>A	c.(1591-1593)CGG>CGA	p.R531R	SETD5_uc003brs.1_Silent_p.R512R|SETD5_uc003bru.2_Silent_p.R433R|SETD5_uc003brv.2_Silent_p.R420R|SETD5_uc010hck.2_Silent_p.R13R|SETD5_uc003brx.2_Silent_p.R200R	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	531										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		GAAAGAAGCGGCGGGATCAGC	0.443			NA											37	37					0	0	0.003755	0	0
C3orf14	57415	broad.mit.edu	37	3	62317051	62317051	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr3:62317051C>T	uc003dlf.2	+	5	373	c.229C>T	c.(229-231)CGG>TGG	p.R77W	C3orf14_uc010hnq.2_Missense_Mutation_p.R77W|C3orf14_uc003dlg.2_Missense_Mutation_p.R77W	NM_020685	NP_065736	Q9HBI5	CC014_HUMAN	hypothetical protein LOC57415	77										central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.00023)|KIRC - Kidney renal clear cell carcinoma(15;0.00877)|Kidney(15;0.0101)		CCCACTTCCACGGCCTGAGGT	0.388			NA											30	142					0	0	0.003755	0	0
OR5K1	26339	broad.mit.edu	37	3	98188897	98188897	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr3:98188897T>A	uc003dsm.2	+	1	477	c.477T>A	c.(475-477)CAT>CAA	p.H159Q		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						CCATGATTCATGTAGGGCTTG	0.423			NA											32	252					0	0	0.012213	0	0
GABRA2	2555	broad.mit.edu	37	4	46252550	46252550	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr4:46252550A>T	uc003gxc.3	-	9	1804	c.1131T>A	c.(1129-1131)AAT>AAA	p.N377K	GABRA2_uc010igc.2_Missense_Mutation_p.N377K|GABRA2_uc011bzc.1_Missense_Mutation_p.N382K	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	377	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTTTTGAAAGATTCGGGGCAT	0.408			NA											45	176					0	0	0.010771	0	0
ANKRD56	345079	broad.mit.edu	37	4	77817780	77817780	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr4:77817780C>A	uc003hki.2	-	1	1223	c.1223G>T	c.(1222-1224)AGC>ATC	p.S408I		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	408											0						CCCACTGCTGCTCTCCTCACT	0.582			NA											18	75					4.96729e-08	8.83444e-08	0.008871	1	0
FRAS1	80144	broad.mit.edu	37	4	79360172	79360172	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr4:79360172C>T	uc003hlb.2	+	40	5923	c.5483C>T	c.(5482-5484)CCT>CTT	p.P1828L	FRAS1_uc003hkw.2_Missense_Mutation_p.P1828L|FRAS1_uc010ijj.1_Missense_Mutation_p.P248L	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1827	CSPG 7.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ATGATCACTCCTGCTGAAAAT	0.408			NA											49	241					0	0	0.01441	0	0
C4orf37	285555	broad.mit.edu	37	4	99055589	99055589	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr4:99055589G>A	uc003htt.1	-	2	221	c.131C>T	c.(130-132)TCT>TTT	p.S44F		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	44											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		GGCAGTCAAAGAAAGAAATGG	0.353			NA											9	99					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	4	119434968	119434968	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr4:119434968G>C	uc010imy.1	+	2	323	c.254G>C	c.(253-255)GGA>GCA	p.G85A	CEP170L_uc003icb.2_5'Flank					Homo sapiens cDNA, FLJ98257.												NA						GCAGTAAATGGAGAGACTCTC	0.413			NA											11	40					0	0	0.003163	0	0
C4orf27	54969	broad.mit.edu	37	4	170652978	170652978	+	Missense_Mutation	SNP	C	C	A	rs1047673		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr4:170652978C>A	uc003isl.3	-	7	851	c.786G>T	c.(784-786)GAG>GAT	p.E262D		NM_017867	NP_060337	Q9NWY4	CD027_HUMAN	hypothetical protein LOC54969	262						nucleus				ovary(1)|pancreas(1)	2		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.018)|LUSC - Lung squamous cell carcinoma(193;0.116)		TTAGTCTCTCCTCATCACTTG	0.363			NA											5	61					0.00136819	0.00207184	0.013537	1	0
DNAH5	1767	broad.mit.edu	37	5	13721350	13721350	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:13721350C>G	uc003jfd.2	-	71	12080	c.12038G>C	c.(12037-12039)CGC>CCC	p.R4013P	DNAH5_uc003jfc.2_Missense_Mutation_p.R181P	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4013	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATGTACTTGCGGGCCTGCCA	0.333			NA							Kartagener_syndrome				6	64					0	0	0.001168	0	0
SPEF2	79925	broad.mit.edu	37	5	35740120	35740120	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:35740120A>G	uc003jjo.2	+	22	3274	c.3163A>G	c.(3163-3165)ACT>GCT	p.T1055A	SPEF2_uc003jjp.1_Missense_Mutation_p.T541A	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1055					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGACCAGCATACTGTGCTTGC	0.333			NA											16	83					0	0	0.00499	0	0
C7	730	broad.mit.edu	37	5	40964946	40964946	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:40964946G>C	uc003jmh.2	+	14	1967	c.1853G>C	c.(1852-1854)CGG>CCG	p.R618P	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	618	Sushi 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GAAGATTTACGGTGGCTTGTT	0.393			NA											54	126					0	0	0.01441	0	0
GPX8	493869	broad.mit.edu	37	5	54456928	54456928	+	Nonsense_Mutation	SNP	T	T	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:54456928T>A	uc003jpq.2	+	2	348	c.311T>A	c.(310-312)TTG>TAG	p.L104*	CDC20B_uc003jpn.1_Intron|CDC20B_uc010ivu.1_Intron|CDC20B_uc003jpo.1_Intron|CDC20B_uc010ivv.1_Intron|CDC20B_uc003jpp.2_Intron|GPX8_uc003jpr.2_Intron|GPX8_uc003jps.2_RNA|GPX8_uc003jpt.2_Nonsense_Mutation_p.L53*	NM_001008397	NP_001008398	Q8TED1	GPX8_HUMAN	glutathione peroxidase 8	104					response to oxidative stress	integral to membrane	glutathione peroxidase activity				0					Glutathione(DB00143)	TTCAGCGTGTTGGCTTTTCCC	0.473			NA											13	77					0	0	0.001855	0	0
SSBP2	23635	broad.mit.edu	37	5	80724479	80724479	+	Silent	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:80724479C>A	uc003kho.2	-	16	1192	c.981G>T	c.(979-981)CTG>CTT	p.L327L	RNU5E_uc011cto.1_Intron|SSBP2_uc010jar.2_Silent_p.L212L|SSBP2_uc003khn.2_Silent_p.L201L|SSBP2_uc003khp.2_Silent_p.L335L|SSBP2_uc011ctp.1_Silent_p.L307L|SSBP2_uc011ctq.1_Silent_p.L305L|SSBP2_uc011ctr.1_Intron	NM_012446	NP_036578	P81877	SSBP2_HUMAN	single-stranded DNA binding protein 2	327					regulation of transcription, DNA-dependent	cytoplasm|nucleus	single-stranded DNA binding		SSBP2/JAK2(4)	haematopoietic_and_lymphoid_tissue(4)|skin(1)	5		Lung NSC(167;0.00154)|all_lung(232;0.00179)|Ovarian(174;0.0338)		OV - Ovarian serous cystadenocarcinoma(54;1.07e-41)|Epithelial(54;2.79e-35)|all cancers(79;1.18e-29)		GTTGATTACTCAGGCTCATAT	0.368			NA											22	49					1.5548e-18	3.49171e-18	0.005443	1	0
TTC37	9652	broad.mit.edu	37	5	94865853	94865853	+	Missense_Mutation	SNP	A	A	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:94865853A>C	uc003klb.2	-	11	1102	c.832T>G	c.(832-834)TTA>GTA	p.L278V	TTC37_uc010jbf.1_Missense_Mutation_p.L230V	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	278	TPR 3.						binding			ovary(3)|pancreas(1)	4						TTAATGCCTAAGCCAATGAGG	0.378			NA											20	47					0	0	0.010504	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476407	140476407	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:140476407C>A	uc003lil.2	+	1	2171	c.2033C>A	c.(2032-2034)GCG>GAG	p.A678E	PCDHB2_uc003lim.1_Missense_Mutation_p.A339E	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	678	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding	p.A678V(1)		ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCCGGAGGCGGCACCGGCC	0.682			NA											47	137					6.08268e-21	1.42647e-20	0.01441	1	0
PCDHB9	56127	broad.mit.edu	37	5	140568427	140568428	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:140568427_140568428CC>AA	uc003liw.1	+	3	1536_1537	c.1536_1537CC>AA	c.(1534-1539)CACCTG>CAAATG	p.512_513HL>QM		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	512_513	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAATGGCCACCTGTTTGCCCT	0.678			NA											24	188					0	0	0.004672	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725310	140725310	+	Silent	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:140725310C>T	uc003ljm.1	+	1	1710	c.1710C>T	c.(1708-1710)GAC>GAT	p.D570D	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.D330D|PCDHGA3_uc011dap.1_Silent_p.D570D	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	570	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCCCACAGACGGTTCCACTG	0.672			NA											28	176					0	0	0.008361	0	0
PDE6A	5145	broad.mit.edu	37	5	149286941	149286942	+	Splice_Site	DNP	CC	CC	AG			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:149286941_149286942CC>AG	uc003lrg.3	-	7	1119	c.999_splice	c.e7-1	p.P333_splice		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A						cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GAGGTGGATTCCTGTGAAGGCC	0.5			NA											10	72					0	0	0.004672	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178552041	178552041	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr5:178552041G>T	uc003mjw.2	-	19	2891	c.2891C>A	c.(2890-2892)CCC>CAC	p.P964H		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	964	TSP type-1 3.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GCGGCTCTCGGGCCGGGCGTC	0.706			NA											28	72					8.88839e-20	2.04819e-19	0.010818	1	0
ATXN1	6310	broad.mit.edu	37	6	16327605	16327605	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr6:16327605G>A	uc003nbt.2	-	8	1908	c.937C>T	c.(937-939)CGG>TGG	p.R313W	ATXN1_uc010jpi.2_Missense_Mutation_p.R313W|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	313					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				TGCTGCAGCCGGCTGCTCTCA	0.677			NA											16	77					0	0	0.006122	0	0
HIST1H3G	8355	broad.mit.edu	37	6	26271476	26271476	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr6:26271476G>T	uc003nhi.2	-	1	137	c.137C>A	c.(136-138)ACC>AAC	p.T46N	uc003nhj.2_5'Flank|HIST1H2BI_uc003nhk.2_5'Flank	NM_003534	NP_003525	P68431	H31_HUMAN	H3 histone family, member H	46					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0						CAGAGCCACGGTGCCGGGACG	0.637			NA											14	69					2.23348e-06	3.74603e-06	0.004007	1	0
HTR1E	3354	broad.mit.edu	37	6	87725649	87725649	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr6:87725649G>T	uc003pli.2	+	2	1300	c.597G>T	c.(595-597)CTG>CTT	p.L199L		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	199	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CTTTGATACTGATTCTCTATT	0.478			NA											6	38					3.59834e-05	5.74433e-05	0.001168	1	0
EPHA7	2045	broad.mit.edu	37	6	93956606	93956606	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr6:93956606C>A	uc003poe.2	-	15	2871	c.2630G>T	c.(2629-2631)CGT>CTT	p.R877L	EPHA7_uc003pof.2_Missense_Mutation_p.R872L|EPHA7_uc011eac.1_Missense_Mutation_p.R873L	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	877	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CCTTTCAGCACGCTCCTTTTG	0.423			NA											12	60					1.05317e-09	2.00784e-09	0.00245	1	0
PTPRK	5796	broad.mit.edu	37	6	128306976	128306976	+	Silent	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr6:128306976C>A	uc003qbk.2	-	22	3505	c.3138G>T	c.(3136-3138)ACG>ACT	p.T1046T	PTPRK_uc003qbj.2_Silent_p.T1047T|PTPRK_uc010kfc.2_Silent_p.T1053T|PTPRK_uc011ebu.1_Silent_p.T1069T	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1046	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CAGGCCAGCCCGTGAAATGGA	0.473			NA											13	53					4.93089e-13	1.02889e-12	0.00245	1	0
C6orf118	168090	broad.mit.edu	37	6	165715464	165715464	+	Missense_Mutation	SNP	G	G	T	rs150870882	byFrequency	TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr6:165715464G>T	uc003qum.3	-	2	383	c.347C>A	c.(346-348)ACG>AAG	p.T116K	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	116											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		GACCAGGGCCGTGTGGATGGT	0.667			NA											12	72					9.31168e-06	1.49551e-05	0.001855	1	0
ZNF679	168417	broad.mit.edu	37	7	63720641	63720641	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr7:63720641G>T	uc003tsx.2	+	3	351	c.82G>T	c.(82-84)GAG>TAG	p.E28*		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATTCTCTCTGGAGGAGTGGCA	0.398			NA											13	89					7.03913e-09	1.29539e-08	0.013537	1	0
GAL3ST4	79690	broad.mit.edu	37	7	99758491	99758491	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr7:99758491G>A	uc003utt.2	-	3	1538	c.521C>T	c.(520-522)TCC>TTC	p.S174F	C7orf43_uc003utr.2_5'Flank|C7orf43_uc003uts.2_5'Flank|GAL3ST4_uc003utu.2_Missense_Mutation_p.S174F|GAL3ST4_uc010lgq.2_Missense_Mutation_p.S112F	NM_024637	NP_078913	Q96RP7	G3ST4_HUMAN	galactose-3-O-sulfotransferase 4	174	Lumenal (Potential).				cell-cell signaling|oligosaccharide metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane|membrane fraction	3'-phosphoadenosine 5'-phosphosulfate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(3)	3	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGATGAGGTGGATTTATAGTA	0.572			NA											9	65					0	0	0.006214	0	0
LRRN3	54674	broad.mit.edu	37	7	110764827	110764827	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr7:110764827C>G	uc003vft.3	+	4	3045	c.1999C>G	c.(1999-2001)CAG>GAG	p.Q667E	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Missense_Mutation_p.Q667E|LRRN3_uc003vfs.3_Missense_Mutation_p.Q667E	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	667	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		GAATTACTTACAGAAACCAAC	0.418			NA											25	94					0	0	0.007291	0	0
PLXNA4	91584	broad.mit.edu	37	7	131859563	131859563	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr7:131859563C>A	uc003vra.3	-	21	4220	c.3991G>T	c.(3991-3993)GAC>TAC	p.D1331Y		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1331	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						ACAGGGTGGTCTTCAATTCCT	0.433			NA											34	64					1.04352e-10	2.03332e-10	0.003755	1	0
SSPO	23145	broad.mit.edu	37	7	149503133	149503133	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr7:149503133G>T	uc010lpk.2	+	59	8637	c.8637G>T	c.(8635-8637)ACG>ACT	p.T2879T		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2879	TSP type-1 8.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ACTGCAACACGCAGCCCTGCA	0.637			NA											7	42					8.12818e-05	0.000128212	0.001984	1	0
POLR3D	661	broad.mit.edu	37	8	22105494	22105494	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr8:22105494G>T	uc003xbl.2	+	4	417	c.334G>T	c.(334-336)GGC>TGC	p.G112C	uc011kzd.1_5'Flank|MIR320A_hsa-mir-320a|MI0000542_5'Flank|POLR3D_uc003xbm.2_Missense_Mutation_p.G112C|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	112					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		CTTTGAGCAGGGCCCAGCTGA	0.522			NA											24	38					1.85244e-09	3.48154e-09	0.00333	1	0
POTEA	340441	broad.mit.edu	37	8	43171053	43171053	+	Silent	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr8:43171053A>T	uc003xpz.1	+	7	967	c.924A>T	c.(922-924)ACA>ACT	p.T308T	POTEA_uc003xqa.1_Silent_p.T262T	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	308										ovary(1)	1						TAAAGCTGACATCAGAGGAAG	0.279			NA											30	62					0	0	0.003271	0	0
ANXA2P2	304	broad.mit.edu	37	9	33624919	33624919	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr9:33624919C>G	uc010mjx.2	+	1	697	c.648C>G	c.(646-648)ATC>ATG	p.I216M		NM_004039	NP_004030			annexin A2 isoform 2												0						GGATCAGCATCATGACCGAGC	0.468			NA											8	44					0	0	0.004482	0	0
FAM75A3	727830	broad.mit.edu	37	9	40702806	40702806	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr9:40702806C>A	uc010mmj.2	+	4	492	c.463C>A	c.(463-465)CCG>ACG	p.P155T		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	155	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GTTAGCTTCCCCGGATCCTCA	0.602			NA											53	373					2.41709e-19	5.4746e-19	0.01441	1	0
ZNF462	58499	broad.mit.edu	37	9	109701363	109701363	+	Silent	SNP	G	G	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr9:109701363G>T	uc004bcz.2	+	7	6691	c.6402G>T	c.(6400-6402)CCG>CCT	p.P2134P	ZNF462_uc010mto.2_Silent_p.P2043P|ZNF462_uc004bda.2_Silent_p.P2042P|ZNF462_uc011lvz.1_Silent_p.P91P|ZNF462_uc004bdb.1_Silent_p.P42P	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	2134					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						AAGCTACCCCGGCTGAAGAAG	0.532			NA											20	116					2.37509e-13	4.99523e-13	0.010504	1	0
ODF2	4957	broad.mit.edu	37	9	131231471	131231471	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr9:131231471C>T	uc011mbd.1	+	5	570	c.259C>T	c.(259-261)CAT>TAT	p.H87Y	ODF2_uc011maz.1_Missense_Mutation_p.H87Y|ODF2_uc011mba.1_Intron|ODF2_uc010myb.2_Missense_Mutation_p.H63Y|ODF2_uc011mbb.1_Missense_Mutation_p.H21Y|ODF2_uc011mbc.1_Intron|ODF2_uc004bva.2_Missense_Mutation_p.H40Y|ODF2_uc004bvb.2_Missense_Mutation_p.H63Y|ODF2_uc011mbe.1_Missense_Mutation_p.H82Y|ODF2_uc004bvc.2_Missense_Mutation_p.H63Y|ODF2_uc010myc.2_Intron|ODF2_uc011mbf.1_Missense_Mutation_p.H68Y|ODF2_uc004bvd.3_Missense_Mutation_p.H87Y|ODF2_uc004bve.2_Missense_Mutation_p.H68Y	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	87					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						GAATCCACCTCATTGCCTGGA	0.473			NA											21	96					0	0	0.014323	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713008	138713008	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr9:138713008C>A	uc004cgr.3	-	11	3499	c.3499G>T	c.(3499-3501)GAC>TAC	p.D1167Y	CAMSAP1_uc004cgq.3_Missense_Mutation_p.D1057Y|CAMSAP1_uc010nbg.2_Missense_Mutation_p.D889Y	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1167						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		CTGTAACTGTCGAAGAGACAC	0.567			NA											17	118					1.56452e-12	3.16488e-12	0.007413	1	0
ZNF630	57232	broad.mit.edu	37	X	47918714	47918714	+	Missense_Mutation	SNP	T	T	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chrX:47918714T>G	uc004div.3	-	5	1369	c.1117A>C	c.(1117-1119)AAG>CAG	p.K373Q	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.K249Q	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	373					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						TCAAAGGGCTTCTCTCTGGTA	0.418			NA											28	19					0	0	0.009535	0	0
TEX13A	56157	broad.mit.edu	37	X	104463895	104463895	+	Silent	SNP	T	T	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chrX:104463895T>A	uc004ema.2	-	5	1093	c.981A>T	c.(979-981)CCA>CCT	p.P327P	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.Q328L	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	327						intracellular	zinc ion binding			ovary(2)	2						GAGGCGGAACTGGTGCTGTGA	0.542			NA											21	22					0	0	0.014323	0	0
ENOX2	10495	broad.mit.edu	37	X	129759305	129759305	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chrX:129759305C>A	uc004evw.2	-	16	2234	c.1816G>T	c.(1816-1818)GGC>TGC	p.G606C	ENOX2_uc004evx.2_Missense_Mutation_p.G577C|ENOX2_uc004evy.2_Missense_Mutation_p.G577C|ENOX2_uc004evv.2_Missense_Mutation_p.G431C	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	606					cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						AGCTTCAAGCCCTCGAAGCCA	0.423	Ovarian(101;828 1506 2951 9500 35258)		NA											44	60					3.73646e-36	9.34114e-36	0.01441	1	0
SLITRK2	84631	broad.mit.edu	37	X	144905997	144905997	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chrX:144905997A>T	uc004fcd.2	+	5	3044	c.2054A>T	c.(2053-2055)TAC>TTC	p.Y685F	SLITRK2_uc010nsp.2_Missense_Mutation_p.Y685F|SLITRK2_uc010nso.2_Missense_Mutation_p.Y685F|SLITRK2_uc011mwq.1_Missense_Mutation_p.Y685F|SLITRK2_uc011mwr.1_Missense_Mutation_p.Y685F|SLITRK2_uc011mws.1_Missense_Mutation_p.Y685F|SLITRK2_uc004fcg.2_Missense_Mutation_p.Y685F|SLITRK2_uc011mwt.1_Missense_Mutation_p.Y685F|CXorf1_uc004fch.2_5'Flank	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	685	Cytoplasmic (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					GGCCATGTCTACAACTATATC	0.473			NA											38	41					0	0	0.006999	0	0
SSR4	6748	broad.mit.edu	37	X	153060161	153060161	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chrX:153060161C>G	uc004fiw.2	+	1	68	c.19C>G	c.(19-21)CTC>GTC	p.L7V	IDH3G_uc004fio.2_5'Flank|IDH3G_uc004fip.2_5'Flank|IDH3G_uc004fiq.2_5'Flank|IDH3G_uc010num.2_5'Flank|IDH3G_uc004fir.2_5'Flank|IDH3G_uc004fit.1_5'Flank|IDH3G_uc004fis.2_5'Flank|SSR4_uc004fiv.2_Missense_Mutation_p.L18V	NM_006280	NP_006271	P51571	SSRD_HUMAN	signal sequence receptor, delta precursor	7					intracellular protein transport	integral to membrane|Sec61 translocon complex	calcium ion binding|protein binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GATGGCATCTCTCGGCGCCCT	0.637			NA											18	14					0	0	0.007413	0	0
MST1P9	11223	broad.mit.edu	37	1	17086085	17086086	+	Frame_Shift_Ins	INS	-	-	C			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr1:17086085_17086086insC	uc010ock.1	-	7	811_812	c.811_812insG	c.(811-813)GCGfs	p.A271fs	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GGCAAGGTACGCCGCGGTGGTG	0.649			NA											3	5	---	---	---	---	NA	NA	NA	NA	NA
SMARCD1	6602	broad.mit.edu	37	12	50479213	50479213	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr12:50479213delG	uc001rvx.3	+	1	231	c.61delG	c.(61-63)GGGfs	p.G21fs	SMARCD1_uc010smo.1_Frame_Shift_Del_p.G21fs|SMARCD1_uc001rvy.3_Frame_Shift_Del_p.G21fs|SMARCD1_uc009zlp.2_Frame_Shift_Del_p.G21fs	NM_003076	NP_003067	Q96GM5	SMRD1_HUMAN	SWI/SNF-related matrix-associated	21					chromatin-mediated maintenance of transcription|nervous system development|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	protein complex scaffold|transcription coactivator activity			ovary(1)	1						AGCCTCAGGAGGGGCGGGCGC	0.736			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
FBN1	2200	broad.mit.edu	37	15	48757810	48757811	+	In_Frame_Ins	INS	-	-	GCG			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr15:48757810_48757811insGCG	uc001zwx.1	-	40	5224_5225	c.4896_4897insCGC	c.(4894-4899)insCGC	p.1632_1633insR	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1632_1633	EGF-like 27; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CCGGTTGGACAGCGGCACTGGA	0.46			NA											7	120	---	---	---	---	NA	NA	NA	NA	NA
ABCC11	85320	broad.mit.edu	37	16	48244967	48244967	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr16:48244967delG	uc002eff.1	-	10	1850	c.1500delC	c.(1498-1500)AACfs	p.N500fs	ABCC11_uc002efg.1_Frame_Shift_Del_p.N500fs|ABCC11_uc002efh.1_Frame_Shift_Del_p.N500fs|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	500	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AAGCATGCCCGTTCCTCTCCA	0.592			NA							Cerumen_Type				16	60	---	---	---	---	NA	NA	NA	NA	NA
TMEM149	79713	broad.mit.edu	37	19	36231408	36231408	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:36231408delG	uc002obc.2	-	3	316	c.215delC	c.(214-216)CCGfs	p.P72fs	TMEM149_uc002obb.2_Intron|TMEM149_uc002obd.3_Frame_Shift_Del_p.P72fs|TMEM149_uc010xsy.1_RNA|TMEM149_uc010eej.2_Frame_Shift_Del_p.P152fs	NM_024660	NP_078936	Q9H665	IGFR1_HUMAN	transmembrane protein 149 precursor	72	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTTTCGGAACGGGGGCGTTAC	0.672			NA											7	53	---	---	---	---	NA	NA	NA	NA	NA
PEG3	5178	broad.mit.edu	37	19	57327542	57327542	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr19:57327542delG	uc002qnu.2	-	7	2619	c.2268delC	c.(2266-2268)CCCfs	p.P756fs	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Frame_Shift_Del_p.P727fs|PEG3_uc002qnv.2_Frame_Shift_Del_p.P756fs|PEG3_uc002qnw.2_Frame_Shift_Del_p.P632fs|PEG3_uc002qnx.2_Frame_Shift_Del_p.P630fs|PEG3_uc010etr.2_Frame_Shift_Del_p.P756fs	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	756					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGTTTTCATAGGGGTTAGAGC	0.408			NA											37	203	---	---	---	---	NA	NA	NA	NA	NA
HOXA5	3202	broad.mit.edu	37	7	27182704	27182704	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chr7:27182704delG	uc003syn.1	-	1	584	c.523delC	c.(523-525)CAGfs	p.Q175fs		NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5	175					negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGTAGATCTGGGGTTGGGCG	0.692	Colon(119;75 2200 7557 42868)		NA											36	278	---	---	---	---	NA	NA	NA	NA	NA
MID1IP1	58526	broad.mit.edu	37	X	38664680	38664681	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08	CT	CT	-	-	CT	CT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c756f7c-d1f0-4ab1-9c9f-41d2282af3bf	27666212-a211-4433-9589-528f3108ef48	g.chrX:38664680_38664681delCT	uc004dei.3	+	3	905_906	c.481_482delCT	c.(481-483)CTCfs	p.L161fs	MID1IP1_uc010ngz.2_Frame_Shift_Del_p.L161fs|MID1IP1_uc004dej.3_Frame_Shift_Del_p.L161fs	NM_001098790	NP_001092260	Q9NPA3	M1IP1_HUMAN	MID1 interacting G12-like protein	161					lipid biosynthetic process|negative regulation of microtubule depolymerization|positive regulation of fatty acid biosynthetic process|positive regulation of ligase activity|protein polymerization	cytosol|microtubule|nucleus					0						GCTCTCGAAACTCACGCGCAAA	0.624			NA											7	10	---	---	---	---	NA	NA	NA	NA	NA
