Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF1	65121	broad.mit.edu	37	1	12854400	12854400	+	Silent	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:12854400A>G	uc001auj.1	+	3	727	c.624A>G	c.(622-624)CAA>CAG	p.Q208Q		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	208											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ATAGTATTCAAGAGCTGGAAA	0.398			NA											11	330					0	0	0.008291	0	0
EPHA8	2046	broad.mit.edu	37	1	22923960	22923960	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:22923960A>G	uc001bfx.1	+	10	2046	c.1921A>G	c.(1921-1923)ATC>GTC	p.I641V		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	641	Cytoplasmic (Potential).|ATP (By similarity).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CGAGAAAATCATCGGCTCTGG	0.657			NA											5	92					0	0	0.001984	0	0
CSMD2	114784	broad.mit.edu	37	1	34006172	34006172	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:34006172G>A	uc001bxn.1	-	59	9181	c.9152C>T	c.(9151-9153)ACC>ATC	p.T3051I	CSMD2_uc001bxm.1_Missense_Mutation_p.T3195I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3051	Sushi 23.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TCCCTCACAGGTGAACACCGC	0.572			NA											7	94					0	0	0.00308	0	0
C1orf94	84970	broad.mit.edu	37	1	34663427	34663427	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:34663427C>T	uc001bxs.3	+	2	751	c.352C>T	c.(352-354)CCT>TCT	p.P118S	C1orf94_uc001bxt.2_Missense_Mutation_p.P308S	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	118							protein binding				0		Myeloproliferative disorder(586;0.0393)				CCCTGAGCTCCCTGCTCAGAA	0.617			NA											4	59					0	0	0.000248	0	0
ANKRD13C	81573	broad.mit.edu	37	1	70740431	70740431	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:70740431T>A	uc001dex.3	-	11	1692	c.1366A>T	c.(1366-1368)AGC>TGC	p.S456C	ANKRD13C_uc009wbk.2_Missense_Mutation_p.S421C	NM_030816	NP_110443	Q8N6S4	AN13C_HUMAN	ankyrin repeat domain 13C	456					protein retention in ER lumen|regulation of anoikis|regulation of receptor biosynthetic process	endoplasmic reticulum membrane|perinuclear region of cytoplasm	receptor binding				0						AATTCCTGGCTCATGGCTATC	0.353			NA											8	134					0	0	0.004482	0	0
SYDE2	84144	broad.mit.edu	37	1	85648436	85648436	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:85648436G>C	uc009wcm.2	-	3	1938	c.1889C>G	c.(1888-1890)ACA>AGA	p.T630R	SYDE2_uc001dku.3_Missense_Mutation_p.T630R	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	630					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		AGCTTTAGTTGTAAGTTCAGG	0.358			NA											6	32					0	0	0.001984	0	0
SLC44A3	126969	broad.mit.edu	37	1	95356740	95356740	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:95356740G>A	uc001dqv.3	+	13	1644	c.1537G>A	c.(1537-1539)GAT>AAT	p.D513N	SLC44A3_uc001dqx.3_Missense_Mutation_p.D512N|SLC44A3_uc010otq.1_Missense_Mutation_p.D445N|SLC44A3_uc010otr.1_Missense_Mutation_p.D477N|SLC44A3_uc001dqw.3_Missense_Mutation_p.D465N|SLC44A3_uc010ots.1_Missense_Mutation_p.D433N|SLC44A3_uc009wds.2_Missense_Mutation_p.D416N|SLC44A3_uc010ott.1_Missense_Mutation_p.D432N|SLC44A3_uc010otu.1_RNA	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	513						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	ATCAGCAAAAGATGCATTCAA	0.313			NA											9	90					0	0	0.004482	0	0
VAV3	10451	broad.mit.edu	37	1	108507399	108507399	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:108507399G>T	uc001dvk.1	-	1	147	c.93C>A	c.(91-93)TTC>TTA	p.F31L	VAV3_uc010ouw.1_Missense_Mutation_p.F31L|VAV3_uc001dvl.1_5'Flank|VAV3_uc010oux.1_Missense_Mutation_p.F31L	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	31	CH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		GCGCAAGGTCGAACACCTGAG	0.637			NA											3	33					0.000602214	0.000712216	0.000602	1	0
CSDE1	7812	broad.mit.edu	37	1	115266587	115266587	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:115266587T>A	uc001efk.2	-	16	2256	c.1790A>T	c.(1789-1791)TAC>TTC	p.Y597F	CSDE1_uc001efi.2_Missense_Mutation_p.Y643F|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_Missense_Mutation_p.Y566F|CSDE1_uc001efm.2_Missense_Mutation_p.Y612F|CSDE1_uc009wgv.2_Missense_Mutation_p.Y597F|CSDE1_uc001efn.2_Missense_Mutation_p.Y566F	NM_001007553	NP_001007554	O75534	CSDE1_HUMAN	upstream of NRAS isoform 1	597					male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			ovary(1)	1	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTGCCAGAGTAAATGGTGGG	0.413			NA											16	141					0	0	0.00499	0	0
FAM46C	54855	broad.mit.edu	37	1	118166407	118166407	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:118166407A>G	uc001ehe.2	+	2	1116	c.917A>G	c.(916-918)TAC>TGC	p.Y306C		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	306											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		AAGTACGACTACCTCATGATC	0.527			NA								Multiple Myeloma(3;1.13e-06)			3	64					0	0	0.000248	0	0
SPAG17	200162	broad.mit.edu	37	1	118570994	118570994	+	Silent	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:118570994A>T	uc001ehk.2	-	26	3701	c.3633T>A	c.(3631-3633)CCT>CCA	p.P1211P		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1211						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CTTGTAAAACAGGTTCTGGTT	0.398			NA											21	73					0	0	0.001523	0	0
HSD3B2	3284	broad.mit.edu	37	1	119965152	119965152	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:119965152A>G	uc001ehs.2	+	3	1801	c.1028A>G	c.(1027-1029)TAC>TGC	p.Y343C	HSD3B2_uc001eht.2_Missense_Mutation_p.Y343C|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	343					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	AAGCCACTCTACAGCTGGGAG	0.502			NA											4	52					0	0	0.000248	0	0
NBPF16	728936	broad.mit.edu	37	1	148754896	148754896	+	Missense_Mutation	SNP	T	T	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:148754896T>G	uc010pba.1	+	14	1743	c.1552T>G	c.(1552-1554)TGT>GGT	p.C518G	NBPF16_uc009wkt.1_Missense_Mutation_p.Y298D	NM_001102663	NP_001096133			hypothetical protein LOC728936												0	all_hematologic(923;0.032)					ACTGGATAGATATTATTCAAC	0.463			NA											4	5					0	0	0.000248	0	0
FLG2	388698	broad.mit.edu	37	1	152324407	152324407	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:152324407C>G	uc001ezw.3	-	3	5928	c.5855G>C	c.(5854-5856)GGA>GCA	p.G1952A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1952	Filaggrin 8.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGCCAGATCCCCTTCTTCC	0.527			NA											4	350					0	0	0.001168	0	0
FLG2	388698	broad.mit.edu	37	1	152325595	152325595	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:152325595G>T	uc001ezw.3	-	3	4740	c.4667C>A	c.(4666-4668)TCT>TAT	p.S1556Y	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1556							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCATGACCAGAGTAGGAATG	0.483			NA											33	280					3.11337e-16	4.24753e-16	0.002836	1	0
FLG2	388698	broad.mit.edu	37	1	152327320	152327320	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:152327320G>T	uc001ezw.3	-	3	3015	c.2942C>A	c.(2941-2943)TCA>TAA	p.S981*	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	981	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGATTTTCCTGAGCCTGACTC	0.493			NA											52	331					3.40343e-31	4.69353e-31	0.00361	1	0
SPRR2F	6705	broad.mit.edu	37	1	153085023	153085023	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:153085023A>T	uc001fbi.2	-	2	246	c.187T>A	c.(187-189)TGC>AGC	p.C63S	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001014450	NP_001014450	Q96RM1	SPR2F_HUMAN	small proline-rich protein 2F	63					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TTTGGCTGGCAGGGTGGGGAA	0.557			NA											24	357					0	0	0.002096	0	0
DENND4B	9909	broad.mit.edu	37	1	153907281	153907281	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:153907281G>C	uc001fdd.1	-	18	3129	c.2728C>G	c.(2728-2730)CAG>GAG	p.Q910E	uc001fdc.1_RNA	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	910	Gln-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			ACctgctcctgctgctgctgc	0.463			NA											3	29					0	0	0.004672	0	0
NUP210L	91181	broad.mit.edu	37	1	154091215	154091215	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:154091215T>A	uc001fdw.2	-	11	1468	c.1396A>T	c.(1396-1398)ATG>TTG	p.M466L	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.M466L	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	466						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			GGTGTAAGCATGATGGGAAAA	0.338			NA											5	121					0	0	0.001168	0	0
FCRL4	83417	broad.mit.edu	37	1	157559211	157559211	+	Silent	SNP	T	T	C	rs62640947	byFrequency	TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:157559211T>C	uc001fqw.2	-	3	226	c.90A>G	c.(88-90)CCA>CCG	p.P30P	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	30	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				ATGTGGTCCATGGAGGATGGA	0.498			NA											5	50					0	0	0.00308	0	0
SPTA1	6708	broad.mit.edu	37	1	158615301	158615301	+	Nonsense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:158615301A>T	uc001fst.1	-	28	4179	c.3980T>A	c.(3979-3981)TTG>TAG	p.L1327*		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1327	Spectrin 13.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTCTCCAGCAAGATCTCTAT	0.438			NA											8	157					0	0	0.004482	0	0
OR6K6	128371	broad.mit.edu	37	1	158725536	158725536	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:158725536T>C	uc001fsw.1	+	1	931	c.931T>C	c.(931-933)TTT>CTT	p.F311L		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	311	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					CCTTGCTCCCTTTTTCAACCC	0.438			NA											4	99					0	0	0.001168	0	0
OR10J1	26476	broad.mit.edu	37	1	159410334	159410334	+	Nonsense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:159410334C>A	uc010piv.1	+	1	786	c.786C>A	c.(784-786)TAC>TAA	p.Y262*	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	262	Helical; Name=6; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TTGTCCACTACAGCTGTGCCT	0.507			NA											13	91					1.5739e-10	2.08038e-10	0.004007	1	0
RC3H1	149041	broad.mit.edu	37	1	173930982	173930982	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:173930982C>T	uc001gju.3	-	11	2170	c.2083G>A	c.(2083-2085)GAG>AAG	p.E695K	RC3H1_uc010pms.1_Missense_Mutation_p.E695K|RC3H1_uc001gjv.2_Missense_Mutation_p.E695K|RC3H1_uc010pmt.1_Missense_Mutation_p.E695K	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	695	Pro-rich.				cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GGTGGAATCTCAATGGGTATA	0.473			NA											23	238					0	0	0.003954	0	0
RC3H1	149041	broad.mit.edu	37	1	173952657	173952657	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:173952657C>A	uc001gju.3	-	3	578	c.491G>T	c.(490-492)CGA>CTA	p.R164L	RC3H1_uc010pms.1_Missense_Mutation_p.R164L|RC3H1_uc001gjv.2_Missense_Mutation_p.R164L|RC3H1_uc010pmt.1_Missense_Mutation_p.R164L	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	164					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TGTAACTGTTCGTTCACCTAA	0.512			NA											3	58					0.004672	0.00534343	0.004672	1	0
PAPPA2	60676	broad.mit.edu	37	1	176563950	176563950	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:176563950C>T	uc001gkz.2	+	3	2374	c.1210C>T	c.(1210-1212)CGC>TGC	p.R404C	PAPPA2_uc001gky.1_Missense_Mutation_p.R404C|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	404					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCATCTTGCCGCTCTTTGCT	0.587			NA											4	145					0	0	0.000602	0	0
NPHS2	7827	broad.mit.edu	37	1	179530487	179530487	+	Nonsense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:179530487C>A	uc001gmq.3	-	3	473	c.388G>T	c.(388-390)GAG>TAG	p.E130*	NPHS2_uc009wxi.2_Nonsense_Mutation_p.E130*	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	130	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						CTTTCATACTCTTGTACAACC	0.368			NA											8	142					1.58986e-06	1.97827e-06	0.008291	1	0
FAM163A	148753	broad.mit.edu	37	1	179783246	179783246	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:179783246C>T	uc009wxj.2	+	6	885	c.426C>T	c.(424-426)CCC>CCT	p.P142P	FAM163A_uc001gnj.2_Silent_p.P142P|FAM163A_uc009wxk.2_Silent_p.P142P	NM_173509	NP_775780	Q96GL9	F163A_HUMAN	hypothetical protein LOC148753	142						integral to membrane				ovary(1)	1						TGGCAGCACCCCAGAGTTACC	0.602			NA											16	95					0	0	0.004007	0	0
LGTN	1939	broad.mit.edu	37	1	206767018	206767018	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:206767018T>C	uc001heh.2	-	14	1843	c.1634A>G	c.(1633-1635)CAG>CGG	p.Q545R	LGTN_uc009xbw.2_Missense_Mutation_p.Q421R	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	545	SUI1.				intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GATCTGCACCTGAAGGCTGTC	0.592			NA											9	92					0	0	0.004482	0	0
C1orf74	148304	broad.mit.edu	37	1	209956173	209956173	+	Silent	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:209956173G>C	uc001hhp.1	-	2	1050	c.807C>G	c.(805-807)CTC>CTG	p.L269L		NM_152485	NP_689698	Q96LT6	CA074_HUMAN	hypothetical protein LOC148304	269										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0328)		GTTAAAGTCAGAGGGCCACAG	0.468			NA											10	153					0	0	0.001368	0	0
RYR2	6262	broad.mit.edu	37	1	237777522	237777522	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:237777522G>A	uc001hyl.1	+	37	5214	c.5094G>A	c.(5092-5094)CTG>CTA	p.L1698L		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1698	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTGGTTTGCTGCGTGCTGGCT	0.552			NA											5	32					0	0	0.000602	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129579	248129579	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:248129579G>T	uc010pzd.1	+	1	946	c.946G>T	c.(946-948)GTG>TTG	p.V316L	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			GACGGGGGCAGTGAGGAGACT	0.423	Melanoma(45;390 1181 23848 28461 41504)		NA											12	85					1.61879e-10	2.13234e-10	0.001368	1	0
OR2M7	391196	broad.mit.edu	37	1	248487753	248487753	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:248487753T>A	uc010pzk.1	-	1	118	c.118A>T	c.(118-120)ATG>TTG	p.M40L		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAGTTTCCCATGAAGGCCACT	0.527			NA											29	259					0	0	0.001786	0	0
OR2T6	254879	broad.mit.edu	37	1	248551699	248551699	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:248551699T>C	uc001iei.1	+	1	790	c.790T>C	c.(790-792)TCT>CCT	p.S264P		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCTTCCCCAATCTTACCACAC	0.478			NA											6	70					0	0	0.001168	0	0
OR2T1	26696	broad.mit.edu	37	1	248570332	248570332	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:248570332A>T	uc010pzm.1	+	1	1037	c.1037A>T	c.(1036-1038)GAT>GTT	p.D346V		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	346	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGAAACAAGGATGTGACTGGA	0.512			NA											27	178					0	0	0.002096	0	0
DIP2C	22982	broad.mit.edu	37	10	436259	436259	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:436259G>A	uc001ifp.2	-	12	1529	c.1439C>T	c.(1438-1440)CCC>CTC	p.P480L	DIP2C_uc009xhj.1_Missense_Mutation_p.P176L	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	480						nucleus	catalytic activity|transcription factor binding	p.P480P(1)		breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CCAGTCTCGGGGCGGTTTGGA	0.478			NA											16	118					0	0	0.001882	0	0
LARP4B	23185	broad.mit.edu	37	10	871703	871704	+	Splice_Site	DNP	CC	CC	AA			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:871703_871704CC>AA	uc001ifs.1	-	11	1273	c.1232_splice	c.e11+1	p.R411_splice		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B								nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						CCGGAACTTGCCTGCTTCGAGG	0.515			NA											4	35					0	0	0.004672	0	0
IL2RA	3559	broad.mit.edu	37	10	6066301	6066301	+	Silent	SNP	C	C	T	rs41290331		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:6066301C>T	uc001iiz.1	-	3	432	c.273G>A	c.(271-273)ACG>ACA	p.T91T	IL2RA_uc009xih.1_Silent_p.T91T|IL2RA_uc001ija.1_Silent_p.T53T	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	91	Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TCACTTGTTTCGTTGTGTTCC	0.413			NA											6	35					0	0	0.001168	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	A	G	rs2257765		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453			NA											3	54					0	0	0.004672	0	0
FRMPD2	143162	broad.mit.edu	37	10	49450294	49450294	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:49450294C>T	uc001jgi.2	-	5	584	c.477G>A	c.(475-477)CGG>CGA	p.R159R	FRMPD2_uc001jgh.2_Silent_p.R128R|FRMPD2_uc001jgj.2_Silent_p.R137R	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	159	KIND.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TCTCATGAACCCGACAAGCTT	0.572			NA											10	114					0	0	0.006214	0	0
HK1	3098	broad.mit.edu	37	10	71158451	71158451	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:71158451G>C	uc001jpl.3	+	17	2577	c.2476G>C	c.(2476-2478)GTG>CTG	p.V826L	HK1_uc001jpg.3_Missense_Mutation_p.V814L|HK1_uc001jph.3_Missense_Mutation_p.V830L|HK1_uc001jpi.3_Missense_Mutation_p.V830L|HK1_uc001jpj.3_Missense_Mutation_p.V861L|HK1_uc001jpk.3_Missense_Mutation_p.V825L	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	826	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						GTGCGGGGTGGTGTCCAGGAG	0.592			NA											7	38					0	0	0.001984	0	0
NDST2	8509	broad.mit.edu	37	10	75565474	75565474	+	Silent	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:75565474T>C	uc001jvk.2	-	8	2421	c.1617A>G	c.(1615-1617)CTA>CTG	p.L539L	NDST2_uc010qks.1_Silent_p.L165L|NDST2_uc010qkt.1_Silent_p.L416L|NDST2_uc001jvl.1_5'Flank|NDST2_uc009xro.2_Silent_p.L165L|NDST2_uc010qku.1_Silent_p.L414L	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	539	Lumenal (Potential).|Heparan sulfate N-deacetylase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					CAAAGGTGTATAGGCCCAGCC	0.517			NA											5	50					0	0	0.001168	0	0
DYDC1	143241	broad.mit.edu	37	10	82112230	82112230	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:82112230T>A	uc001kbx.2	-	3	293	c.128A>T	c.(127-129)AAT>ATT	p.N43I	DYDC1_uc001kby.1_Missense_Mutation_p.N43I|DYDC1_uc009xsr.1_Missense_Mutation_p.N43I|DYDC2_uc001kbz.1_RNA|DYDC2_uc001kca.1_Intron	NM_138812	NP_620167	Q8WWB3	DYDC1_HUMAN	DPY30 domain containing 1	43											0			Colorectal(32;0.229)			CATGGTCACATTTTCCTTATA	0.378			NA											6	23					0	0	0.001984	0	0
TNKS2	80351	broad.mit.edu	37	10	93586895	93586895	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:93586895T>C	uc001khp.2	+	8	1214	c.917T>C	c.(916-918)CTC>CCC	p.L306P		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	306	ANK 6.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				CCAACACTGCTCAATTGTCAC	0.393			NA											4	76					0	0	0.000248	0	0
BTAF1	9044	broad.mit.edu	37	10	93695417	93695417	+	Silent	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:93695417A>G	uc001khr.2	+	2	116	c.18A>G	c.(16-18)CTA>CTG	p.L6L	BTAF1_uc009xua.1_RNA	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	6					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				ATTTCAGGCTAGATCGCCTTT	0.373			NA											13	53					0	0	0.00245	0	0
NEURL	9148	broad.mit.edu	37	10	105349997	105349997	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:105349997G>A	uc001kxh.2	+	6	2003	c.1593G>A	c.(1591-1593)ACG>ACA	p.T531T	SH3PXD2A_uc010qqr.1_Intron	NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	531	RING-type.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		CGGTGGACACGGTCATCTACA	0.637			NA											10	77					0	0	0.006214	0	0
ATRNL1	26033	broad.mit.edu	37	10	117001358	117001358	+	Splice_Site	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:117001358A>G	uc001lcg.2	+	10	1919	c.1533_splice	c.e10-2	p.W511_splice		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor							integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TTTATTCTGTAGGACTATTTT	0.328			NA											5	51					0	0	0.001168	0	0
KIAA1598	57698	broad.mit.edu	37	10	118699991	118699991	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:118699991G>A	uc009xyw.2	-	9	1342	c.844C>T	c.(844-846)CAG>TAG	p.Q282*	KIAA1598_uc001lcz.3_Nonsense_Mutation_p.Q282*|KIAA1598_uc010qso.1_Nonsense_Mutation_p.Q222*|KIAA1598_uc010qsp.1_Nonsense_Mutation_p.Q282*|KIAA1598_uc010qsq.1_Nonsense_Mutation_p.Q222*|KIAA1598_uc001lcy.3_Nonsense_Mutation_p.Q252*	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	282	Potential.				axon guidance	axon					0				all cancers(201;0.00494)		TGTTGATGCTGAATTCTCTCT	0.368			NA											8	116					0	0	0.006214	0	0
ATE1	11101	broad.mit.edu	37	10	123661995	123661995	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:123661995A>G	uc001lfp.2	-	6	806	c.724T>C	c.(724-726)TTT>CTT	p.F242L	ATE1_uc001lfq.2_Missense_Mutation_p.F242L|ATE1_uc010qtr.1_Missense_Mutation_p.F127L|ATE1_uc010qts.1_Missense_Mutation_p.F146L|ATE1_uc010qtt.1_Missense_Mutation_p.F235L|ATE1_uc001lfr.2_Intron|ATE1_uc009xzu.2_Intron	NM_007041	NP_008972	O95260	ATE1_HUMAN	arginyltransferase 1 isoform 2	242					protein arginylation	cytoplasm|nucleus	acyltransferase activity|arginyltransferase activity				0		all_neural(114;0.061)|Lung NSC(174;0.095)|all_lung(145;0.124)|Breast(234;0.212)				TTTGGTGGAAACAAAGATGGT	0.423			NA											16	98					0	0	0.006122	0	0
C10orf90	118611	broad.mit.edu	37	10	128114584	128114584	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr10:128114584T>A	uc001ljq.2	-	8	2158	c.2037A>T	c.(2035-2037)AGA>AGT	p.R679S	C10orf90_uc001ljp.2_Missense_Mutation_p.R535S|C10orf90_uc010qum.1_Missense_Mutation_p.R776S|C10orf90_uc001ljo.2_RNA	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	679										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		CGGCACGGAGTCTGTTACTTT	0.413			NA											15	84					0	0	0.00499	0	0
MUC6	4588	broad.mit.edu	37	11	1026473	1026473	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:1026473G>A	uc001lsw.2	-	20	2451	c.2400C>T	c.(2398-2400)CCC>CCT	p.P800P		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	800					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CACACTTGGTGGGCACCTGGA	0.692			NA											3	22					0	0	0.000602	0	0
MUC5B	727897	broad.mit.edu	37	11	1264911	1264911	+	Silent	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:1264911T>C	uc009ycr.1	+	48	8841	c.8715T>C	c.(8713-8715)TCT>TCC	p.S2905S	MUC5B_uc001ltb.2_Silent_p.S2270S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2267	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CACCCCCTTCTCCAGGGACGA	0.677			NA											3	98					0	0	0.004672	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1605992	1605992	+	Missense_Mutation	SNP	G	G	T	rs60899198		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:1605992G>T	uc001ltu.1	-	1	522	c.488C>A	c.(487-489)TCC>TAC	p.S163Y	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	163	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGCCCCCTTGGAGCACCCACA	0.652			NA											14	165					3.27435e-08	4.18329e-08	0.00245	1	0
OR51Q1	390061	broad.mit.edu	37	11	5443585	5443585	+	Missense_Mutation	SNP	G	G	A	rs145294897		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:5443585G>A	uc010qzd.1	+	1	155	c.155G>A	c.(154-156)CGC>CAC	p.R52H	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTGTCATTCGCACAGAGCCA	0.562			NA											7	228					0	0	0.001984	0	0
OR52L1	338751	broad.mit.edu	37	11	6007675	6007675	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:6007675G>A	uc001mcd.2	-	1	541	c.486C>T	c.(484-486)ATC>ATT	p.I162I		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	162	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCACCATTCCGATGCACCCTA	0.517	Melanoma(121;653 1666 10547 22796 51255)		NA											5	73					0	0	0.001984	0	0
BTBD10	84280	broad.mit.edu	37	11	13427223	13427223	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:13427223C>A	uc001mkz.2	-	7	1246	c.989G>T	c.(988-990)GGA>GTA	p.G330V	BTBD10_uc010rcl.1_Missense_Mutation_p.G338V|BTBD10_uc001mla.2_Missense_Mutation_p.G314V|BTBD10_uc009ygn.2_RNA|BTBD10_uc010rcm.1_Missense_Mutation_p.G282V|BTBD10_uc010rcn.1_Missense_Mutation_p.G299V|BTBD10_uc009ygo.2_Missense_Mutation_p.G282V	NM_032320	NP_115696	Q9BSF8	BTBDA_HUMAN	K+ channel tetramerization protein	330						nucleus					0				Epithelial(150;0.0214)		ATATTCTTCTCCCATCTGTGG	0.418			NA											18	259					1.96292e-10	2.57676e-10	0.001523	1	0
MPPED2	744	broad.mit.edu	37	11	30433117	30433117	+	Silent	SNP	G	G	A	rs142670850		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:30433117G>A	uc001msr.2	-	6	903	c.783C>T	c.(781-783)ACC>ACT	p.T261T	MPPED2_uc001msq.3_Intron|MPPED2_uc009yji.2_Silent_p.T135T	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	261					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						TGTAACCGTCGGTCATGATGC	0.453			NA											5	49					0	0	0.001984	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798491	55798491	+	Silent	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:55798491C>G	uc010riw.1	+	1	597	c.597C>G	c.(595-597)CTC>CTG	p.L199L		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					AGCTTCTGCTCTTTGCTTTGT	0.418			NA											24	304					0	0	0.00632	0	0
PRG2	5553	broad.mit.edu	37	11	57156708	57156708	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:57156708C>A	uc001njz.2	-	2	168	c.141G>T	c.(139-141)GAG>GAT	p.E47D	PRG2_uc001njw.1_RNA|PRG2_uc001njx.1_RNA|PRG2_uc001njy.1_RNA|PRG2_uc001nka.2_Missense_Mutation_p.E47D|PRG2_uc001nkb.2_Missense_Mutation_p.E47D|PRG2_uc001nkd.2_Missense_Mutation_p.E47D|PRG2_uc001nkc.2_Missense_Mutation_p.E47D|PRG2_uc001nke.2_Missense_Mutation_p.E327D	NM_002728	NP_002719	P13727	PRG2_HUMAN	proteoglycan 2 preproprotein	47					defense response to bacterium|immune response	extracellular region|transport vesicle	heparin binding|sugar binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Sargramostim(DB00020)	AAGGGGTCTCCTCCATCTCCT	0.572			NA											5	80					8.12818e-05	9.82584e-05	0.001984	1	0
OR9Q2	219957	broad.mit.edu	37	11	57958327	57958327	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:57958327G>A	uc010rka.1	+	1	365	c.365G>A	c.(364-366)CGC>CAC	p.R122H		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				GCCTATGACCGCTACACGGCC	0.567			NA											10	123					0	0	0.008291	0	0
MS4A5	64232	broad.mit.edu	37	11	60215196	60215196	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:60215196C>T	uc001npo.2	+	5	653	c.567C>T	c.(565-567)TGC>TGT	p.C189C		NM_023945	NP_076434	Q9H3V2	MS4A5_HUMAN	membrane-spanning 4-domains, subfamily A, member	189	Cytoplasmic (Potential).					integral to membrane	receptor activity			large_intestine(1)|ovary(1)	2						TTTTGGGGTGCCACTCAGAGG	0.333			NA											6	137					0	0	0.00308	0	0
MS4A12	54860	broad.mit.edu	37	11	60269468	60269468	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:60269468G>T	uc001npr.2	+	4	484	c.427G>T	c.(427-429)GGC>TGC	p.G143C		NM_017716	NP_060186	Q9NXJ0	M4A12_HUMAN	membrane-spanning 4-domains, subfamily A, member	143	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						TATTATCTCTGGCTCTCTCTC	0.373			NA											18	157					5.35356e-11	7.15056e-11	0.00278	1	0
SYT12	91683	broad.mit.edu	37	11	66807372	66807372	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:66807372A>G	uc009yrl.2	+	4	549	c.319A>G	c.(319-321)ATC>GTC	p.I107V	SYT12_uc001oju.2_Missense_Mutation_p.I107V	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	107	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						CTTTGAGAGCATCAGTGAACT	0.642	Ovarian(65;2862 3307)		NA											8	111					0	0	0.008291	0	0
NUMA1	4926	broad.mit.edu	37	11	71715288	71715288	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:71715288G>A	uc001orl.1	-	25	6278	c.6106C>T	c.(6106-6108)CCA>TCA	p.P2036S	IL18BP_uc009ysu.1_Intron|NUMA1_uc001orj.2_Missense_Mutation_p.P218S|NUMA1_uc009ysw.1_Missense_Mutation_p.P1603S|NUMA1_uc001ork.1_Missense_Mutation_p.P900S|NUMA1_uc001orm.1_Missense_Mutation_p.P2022S	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	2036					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						GTAGAAGCTGGAGCTGCTTTC	0.607			NA	T	RARA	APL								3	39					0	0	0.004672	0	0
DNAJB13	374407	broad.mit.edu	37	11	73669405	73669405	+	Missense_Mutation	SNP	G	G	A	rs145187500	byFrequency	TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:73669405G>A	uc001ouo.2	+	2	863	c.112G>A	c.(112-114)GAG>AAG	p.E38K		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	38	J.				apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					GAAGTCAAATGAGCCGTCTTC	0.527			NA											5	66					0	0	0.001984	0	0
PCF11	51585	broad.mit.edu	37	11	82868592	82868592	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:82868592C>T	uc001ozx.3	+	1	456	c.111C>T	c.(109-111)ATC>ATT	p.I37I	PCF11_uc010rsu.1_Silent_p.I37I|PCF11_uc001ozy.2_Silent_p.I37I	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	37	CID.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						AGCCGCACATCAATATGCTGA	0.597			NA											6	127					0	0	0.001984	0	0
FAM55D	54827	broad.mit.edu	37	11	114453682	114453682	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:114453682A>G	uc001ppc.2	-	3	339	c.158T>C	c.(157-159)TTA>TCA	p.L53S	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	53						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		TTTAGGGAATAAGGACTTTGT	0.393			NA											18	191					0	0	0.008871	0	0
C3AR1	719	broad.mit.edu	37	12	8212099	8212099	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:8212099A>G	uc001qtv.1	-	2	775	c.683T>C	c.(682-684)GTC>GCC	p.V228A		NM_004054	NP_004045	Q16581	C3AR_HUMAN	complement component 3a receptor 1	228	Extracellular (Potential).				blood circulation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response	integral to plasma membrane	C3a anaphylatoxin receptor activity|complement component C3a receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)	1				Kidney(36;0.0893)		AGGTTGGAAGACAGTGGGGAC	0.408			NA											9	104					0	0	0.004482	0	0
TAS2R46	259292	broad.mit.edu	37	12	11214561	11214561	+	Silent	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:11214561G>T	uc001qzp.1	-	1	333	c.333C>A	c.(331-333)GCC>GCA	p.A111A	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176887	NP_795368	P59540	T2R46_HUMAN	taste receptor, type 2, member 46	111	Cytoplasmic (Potential).				sensory perception of taste	cilium membrane|integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0344)	BRCA - Breast invasive adenocarcinoma(232;0.196)		TGGAGAAATTGGCAATCTTGA	0.373			NA											13	83					4.7546e-09	6.17775e-09	0.004007	1	0
LRRK2	120892	broad.mit.edu	37	12	40688716	40688716	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:40688716A>T	uc001rmg.3	+	22	2999	c.2878A>T	c.(2878-2880)AGG>TGG	p.R960W	LRRK2_uc001rmh.1_Missense_Mutation_p.R582W|LRRK2_uc009zjw.2_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	960					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TGATTCACTCAGTAAGTATTT	0.289			NA											4	69					0	0	0.000602	0	0
ASB8	140461	broad.mit.edu	37	12	48543756	48543756	+	Missense_Mutation	SNP	C	C	T	rs149438083		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:48543756C>T	uc001rrh.2	-	4	429	c.260G>A	c.(259-261)CGA>CAA	p.R87Q	ASB8_uc010slr.1_Missense_Mutation_p.R83Q	NM_024095	NP_077000	Q9H765	ASB8_HUMAN	ankyrin repeat and SOCS box-containing 8	87	ANK 2.				intracellular signal transduction	cytoplasm|nucleus				kidney(1)	1						GAGGGCTGTTCGGTTATACCC	0.483			NA											7	65					0	0	0.004482	0	0
CCDC65	85478	broad.mit.edu	37	12	49312207	49312207	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:49312207G>A	uc001rso.2	+	5	986	c.759G>A	c.(757-759)AAG>AAA	p.K253K		NM_033124	NP_149115	Q8IXS2	CCD65_HUMAN	coiled-coil domain containing 65	253										ovary(1)|skin(1)	2						AGGATGAGAAGAGCTCCAAAG	0.433			NA											5	65					0	0	0.001984	0	0
KRT71	112802	broad.mit.edu	37	12	52946759	52946759	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:52946759C>T	uc001sao.2	-	1	173	c.103G>A	c.(103-105)GGG>AGG	p.G35R		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	35	Head.|Gly-rich.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CCTTTGCTCCCTGCCCGGAAG	0.667			NA											12	147					0	0	0.00245	0	0
ESPL1	9700	broad.mit.edu	37	12	53684209	53684209	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:53684209C>T	uc001sck.2	+	24	5411	c.5320C>T	c.(5320-5322)CGA>TGA	p.R1774*	ESPL1_uc001scj.2_Nonsense_Mutation_p.R1449*	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1774					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						TACTGACAAGCGAGAATGGTG	0.577	Colon(53;1069 1201 2587 5382)		NA											11	90					0	0	0.001368	0	0
MON2	23041	broad.mit.edu	37	12	62918926	62918926	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:62918926A>G	uc001sre.2	+	10	1563	c.1172A>G	c.(1171-1173)AAT>AGT	p.N391S	MON2_uc009zqj.2_Missense_Mutation_p.N391S|MON2_uc010ssl.1_Missense_Mutation_p.N319S|MON2_uc010ssm.1_Missense_Mutation_p.N391S|MON2_uc010ssn.1_Missense_Mutation_p.N391S|MON2_uc001srf.2_Missense_Mutation_p.N154S	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	391					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		GATATTGTAAATGCACTGGGA	0.338			NA											6	51					0	0	0.00308	0	0
NAV3	89795	broad.mit.edu	37	12	78513397	78513398	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:78513397_78513398CC>AA	uc001syp.2	+	15	3594_3595	c.3421_3422CC>AA	c.(3421-3423)CCT>AAT	p.P1141N	NAV3_uc001syo.2_Missense_Mutation_p.P1141N|NAV3_uc010sub.1_Missense_Mutation_p.P641N|NAV3_uc009zsf.2_Missense_Mutation_p.P149N	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1141	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CTTGCCCCGCCCTTCAAAATCC	0.53			NA								HNSCC(70;0.22)			8	72					0	0	0.004672	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100478282	100478282	+	Silent	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:100478282T>C	uc001tgq.2	-	10	1489	c.1260A>G	c.(1258-1260)ACA>ACG	p.T420T	UHRF1BP1L_uc001tgr.2_Silent_p.T420T|UHRF1BP1L_uc001tgp.2_Silent_p.T70T	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	420										ovary(2)	2						GAGAGGCATGTGTTGGGGATT	0.368			NA											19	162					0	0	0.00278	0	0
HIP1R	9026	broad.mit.edu	37	12	123338594	123338594	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:123338594C>G	uc001udj.1	+	8	641	c.582C>G	c.(580-582)TTC>TTG	p.F194L	HIP1R_uc001udg.1_Missense_Mutation_p.F182L|HIP1R_uc001udi.1_Missense_Mutation_p.F194L	NM_003959	NP_003950	O75146	HIP1R_HUMAN	huntingtin interacting protein-1-related	194					receptor-mediated endocytosis	clathrin coated vesicle membrane|coated pit|perinuclear region of cytoplasm	actin binding|phosphatidylinositol binding			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;4.6e-05)|Epithelial(86;0.000119)|BRCA - Breast invasive adenocarcinoma(302;0.2)		GCACAGTTTTCCGACAGCTCA	0.617			NA											17	202					0	0	0.00333	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834688	125834688	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:125834688G>T	uc001uhe.1	+	2	751	c.743G>T	c.(742-744)AGC>ATC	p.S248I		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	248	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGCCTGGAGAGCCCCCAGCAA	0.572			NA											13	67					2.27111e-07	2.86325e-07	0.001368	1	0
GPR133	283383	broad.mit.edu	37	12	131561418	131561418	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:131561418A>T	uc001uit.3	+	14	2105	c.1546A>T	c.(1546-1548)AGC>TGC	p.S516C	GPR133_uc010tbm.1_Missense_Mutation_p.S548C|GPR133_uc009zyo.2_5'UTR|GPR133_uc001uiv.1_Missense_Mutation_p.S35C	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	516	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CCTGGACTTCAGGTACCCTCT	0.587			NA											4	88					0	0	0.000602	0	0
GPR133	283383	broad.mit.edu	37	12	131616301	131616301	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr12:131616301G>C	uc001uit.3	+	21	2766	c.2207G>C	c.(2206-2208)AGA>ACA	p.R736T	GPR133_uc010tbm.1_Missense_Mutation_p.R768T|GPR133_uc009zyo.2_Missense_Mutation_p.R18T|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	736	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		GCTGTGACCAGAGTCATCTCA	0.587			NA											8	78					0	0	0.008291	0	0
ATP12A	479	broad.mit.edu	37	13	25281307	25281307	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr13:25281307C>T	uc001upp.2	+	16	2503	c.2316C>T	c.(2314-2316)TCC>TCT	p.S772S	ATP12A_uc010aaa.2_Silent_p.S778S	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	772	Cytoplasmic (Potential).			SI -> LH (in Ref. 7; CAA49478).	ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	ACTTCGCATCCATCGTCACAG	0.542	Pancreas(156;1582 1935 18898 22665 26498)		NA											6	42					0	0	0.001168	0	0
CENPJ	55835	broad.mit.edu	37	13	25479796	25479796	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr13:25479796C>A	uc001upt.3	-	7	2633	c.2380G>T	c.(2380-2382)GAT>TAT	p.D794Y	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA|CENPJ_uc001upu.2_5'Flank	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	794					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		CTTTCATCATCAAAGTCCATT	0.418			NA											9	93					1.76689e-08	2.27257e-08	0.006214	1	0
MTUS2	23281	broad.mit.edu	37	13	30077256	30077257	+	Missense_Mutation	DNP	GA	GA	CT			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	GA	GA	-	-	GA	GA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr13:30077256_30077257GA>CT	uc001usl.3	+	14	4111_4112	c.4053_4054GA>CT	c.(4051-4056)CCGATT>CCCTTT	p.I1352F	MTUS2_uc001usm.3_Missense_Mutation_p.I321F|MTUS2_uc010aau.2_Missense_Mutation_p.I231F|MTUS2_uc010tdq.1_Missense_Mutation_p.I104F	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1342						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CGACCAGTCCGATTAAACTCTC	0.569			NA											9	41					0	0	0.004672	0	0
TRPC4	7223	broad.mit.edu	37	13	38266233	38266233	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr13:38266233C>T	uc001uws.2	-	4	1372	c.1137G>A	c.(1135-1137)CTG>CTA	p.L379L	TRPC4_uc010abv.2_Intron|TRPC4_uc001uwt.2_Silent_p.L379L|TRPC4_uc010tey.1_Silent_p.L379L|TRPC4_uc010abw.2_Silent_p.L206L|TRPC4_uc010abx.2_Silent_p.L379L|TRPC4_uc010aby.2_Silent_p.L379L	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	379	Poly-Leu.|Helical; (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CAAGCAGCAGCAGGAACAAAA	0.498			NA											6	58					0	0	0.001168	0	0
DACH1	1602	broad.mit.edu	37	13	72049967	72049967	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr13:72049967T>C	uc010thn.1	-	10	2308	c.1885A>G	c.(1885-1887)AGG>GGG	p.R629G	DACH1_uc010tho.1_Missense_Mutation_p.R481G|DACH1_uc010thp.1_Missense_Mutation_p.R427G	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	681	DACHbox-C.|Potential.|Interaction with SIN3A (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		TTCTTTAGCCTCTTTTGAACT	0.338			NA											6	68					0	0	0.001168	0	0
OR4L1	122742	broad.mit.edu	37	14	20528818	20528818	+	Silent	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:20528818G>C	uc001vwn.1	+	1	615	c.615G>C	c.(613-615)CTG>CTC	p.L205L		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		ACAGCGGGCTGCTCTCTTTCA	0.428			NA											10	147					0	0	0.008291	0	0
TTC5	91875	broad.mit.edu	37	14	20766966	20766966	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:20766966T>C	uc001vwt.2	-	5	686	c.629A>G	c.(628-630)TAT>TGT	p.Y210C	TTC5_uc001vwu.2_Missense_Mutation_p.Y67C	NM_138376	NP_612385	Q8N0Z6	TTC5_HUMAN	tetratricopeptide repeat domain 5	210	TPR 3.				DNA repair	cytoplasm|nucleus	binding			ovary(1)	1	all_cancers(95;0.00092)		Epithelial(56;1.1e-06)|all cancers(55;8.07e-06)	GBM - Glioblastoma multiforme(265;0.0106)		TGCTTGGGCATAGGCACTGAG	0.453			NA											6	45					0	0	0.001984	0	0
SLC7A7	9056	broad.mit.edu	37	14	23282224	23282224	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:23282224C>A	uc001wgr.3	-	2	522	c.384G>T	c.(382-384)GAG>GAT	p.E128D	SLC7A7_uc001wgs.3_Missense_Mutation_p.E128D|SLC7A7_uc001wgt.3_Missense_Mutation_p.E128D|SLC7A7_uc001wgu.3_Missense_Mutation_p.E128D|SLC7A7_uc001wgv.3_Missense_Mutation_p.E128D	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	128					blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		GGCTGGTGGGCTCAATGATGA	0.557			NA											8	134					2.17888e-05	2.66773e-05	0.006214	1	0
NYNRIN	57523	broad.mit.edu	37	14	24886453	24886453	+	Missense_Mutation	SNP	T	T	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:24886453T>G	uc001wpf.3	+	9	5816	c.5498T>G	c.(5497-5499)CTT>CGT	p.L1833R		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1833					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GACCAGGTCCTTTTGCTGTCC	0.582			NA											5	42					0	0	0.000602	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724577	38724577	+	Silent	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:38724577C>A	uc001wum.1	-	1	998	c.651G>T	c.(649-651)CGG>CGT	p.R217R		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	217	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GGAGCTGTCCCCGGCAGAGCG	0.597			NA											27	188					1.16021e-09	1.51781e-09	0.007291	1	0
MDGA2	161357	broad.mit.edu	37	14	47343340	47343340	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:47343340T>C	uc001wwj.3	-	13	2490	c.2294A>G	c.(2293-2295)AAT>AGT	p.N765S	MDGA2_uc001wwh.3_5'UTR|MDGA2_uc001wwi.3_Missense_Mutation_p.N536S|MDGA2_uc010ani.2_Missense_Mutation_p.N325S	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	765	MAM.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CCAGTCAAAATTATCTGTATC	0.318			NA											12	83					0	0	0.001368	0	0
AKAP5	9495	broad.mit.edu	37	14	64935446	64935446	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:64935446G>A	uc001xhd.3	+	2	712	c.334G>A	c.(334-336)GAG>AAG	p.E112K	ZBTB25_uc001xhc.2_Intron	NM_004857	NP_004848	P24588	AKAP5_HUMAN	A-kinase anchor protein 5	112	Essential to the intracellular anchoring function (By similarity).				energy reserve metabolic process|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting|regulation of insulin secretion|signal transduction|synaptic transmission	cytosol	adenylate cyclase binding|calmodulin binding				0				all cancers(60;0.00749)|OV - Ovarian serous cystadenocarcinoma(108;0.0095)|BRCA - Breast invasive adenocarcinoma(234;0.0449)		AATAAATGCTGAGGATGCTGA	0.413			NA											9	144					0	0	0.008291	0	0
ZBTB25	7597	broad.mit.edu	37	14	64954637	64954637	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:64954637G>A	uc001xhf.2	-	3	495	c.312C>T	c.(310-312)GCC>GCT	p.A104A	ZBTB25_uc001xhc.2_Intron|ZBTB25_uc001xhg.2_Silent_p.A104A	NM_006977	NP_008908	P24278	ZBT25_HUMAN	zinc finger protein 46	104	BTB.					cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2				all cancers(60;0.00865)|OV - Ovarian serous cystadenocarcinoma(108;0.0102)|BRCA - Breast invasive adenocarcinoma(234;0.0469)		AAAGGTAGTCGGCGTGAAGAA	0.418			NA											4	91					0	0	0.000248	0	0
MAP3K9	4293	broad.mit.edu	37	14	71209239	71209239	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:71209239G>A	uc001xmm.2	-	6	1396	c.1396C>T	c.(1396-1398)CGG>TGG	p.R466W	MAP3K9_uc010ttk.1_Missense_Mutation_p.R203W|MAP3K9_uc001xmk.2_Missense_Mutation_p.R160W|MAP3K9_uc001xml.2_Missense_Mutation_p.R466W	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	466	Leucine-zipper 2.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		TCCCGACGCCGCAGCAGTTCC	0.612	GBM(114;411 1587 13539 28235 50070)		NA											6	45					0	0	0.001984	0	0
GALC	2581	broad.mit.edu	37	14	88416221	88416221	+	Nonsense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:88416221T>A	uc001xvt.2	-	12	1705	c.1306A>T	c.(1306-1308)AGA>TGA	p.R436*	GALC_uc010tvw.1_RNA|GALC_uc010tvx.1_Nonsense_Mutation_p.R410*|GALC_uc010tvy.1_Nonsense_Mutation_p.R413*|GALC_uc010tvz.1_Nonsense_Mutation_p.R380*	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	436					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						AAAAGAAATCTTTCGGATGTT	0.338			NA											9	104					0	0	0.006214	0	0
KCNK10	54207	broad.mit.edu	37	14	88729741	88729741	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:88729741C>A	uc001xwo.2	-	2	649	c.192G>T	c.(190-192)CAG>CAT	p.Q64H	KCNK10_uc001xwm.2_Missense_Mutation_p.Q69H|KCNK10_uc001xwn.2_Missense_Mutation_p.Q69H	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	64	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TCATGACGGTCTGCAAGCCCC	0.607			NA											7	137					8.12818e-05	9.82584e-05	0.001984	1	0
AKT1	207	broad.mit.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs34409589		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:105246551C>T	uc001ypk.2	-	3	603	c.49G>A	c.(49-51)GAG>AAG	p.E17K	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Missense_Mutation_p.E17K|AKT1_uc010axa.2_Missense_Mutation_p.E17K|AKT1_uc001ypm.2_Missense_Mutation_p.E17K|AKT1_uc001ypn.2_Missense_Mutation_p.E17K|AKT1_uc010tyk.1_5'Flank	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	17	PH.		E -> K (in breast cancer; also detected in colorectal and ovarian cancer; somatic mutation; alters the PH domain conformation; results in activation of the protein; alters the subcellular location of the protein to the plasma membrane).	E->K: Increase in basal ubiquitination, phosphorylation at T-308 and important increase in membrane recruitment. Decrease in ubiquitination, phosphorylation at T-308 as well as impaired association with the membrane; when associated with R-8.	activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity	p.E17K(126)		breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	TTGATGTACTCCCCTACAGAC	0.612		E17K(KU1919_URINARY_TRACT)	1	Mis		breast|colorectal|ovarian|NSCLC								4	32					0	0	0.000602	0	0
MTA1	9112	broad.mit.edu	37	14	105911820	105911820	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr14:105911820C>T	uc001yqx.2	+	3	349	c.162C>T	c.(160-162)ACC>ACT	p.T54T	MTA1_uc001yqy.2_RNA|MTA1_uc001yqz.1_5'UTR|MTA1_uc001yra.1_5'UTR	NM_004689	NP_004680	Q13330	MTA1_HUMAN	metastasis associated protein	54	BAH.				signal transduction	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(154;0.0293)|all_epithelial(191;0.128)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00897)|Epithelial(46;0.026)	Epithelial(152;0.19)		TCTCCAGCACCCTCATCGCCC	0.667			NA											7	66					0	0	0.00308	0	0
OR4M2	390538	broad.mit.edu	37	15	22369371	22369372	+	Missense_Mutation	DNP	TC	TC	AG			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	TC	TC	-	-	TC	TC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr15:22369371_22369372TC>AG	uc010tzu.1	+	1	796_797	c.796_797TC>AG	c.(796-798)TCG>AGG	p.S266R	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CCCATTTGACTCGTTTTCCCTA	0.416			NA											6	83					0	0	0.004672	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49325180	49325180	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr15:49325180C>A	uc001zxe.1	-	4	780	c.646G>T	c.(646-648)GAT>TAT	p.D216Y	SECISBP2L_uc001zxd.1_Missense_Mutation_p.D216Y|SECISBP2L_uc010bep.1_5'UTR|SECISBP2L_uc010beq.1_Intron	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	216										breast(1)|skin(1)	2						TGTGAAGCATCTACCAGAAGC	0.398			NA											15	202					1.15919e-05	1.42382e-05	0.008871	1	0
DAPK2	23604	broad.mit.edu	37	15	64263687	64263687	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr15:64263687T>C	uc002amr.2	-	4	419	c.388A>G	c.(388-390)ATT>GTT	p.I130V	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Missense_Mutation_p.I120V	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	130	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		ATCTGCTTAATGAAGCTGGTG	0.498			NA											8	114					0	0	0.008291	0	0
TMEM202	338949	broad.mit.edu	37	15	72690674	72690674	+	Nonsense_Mutation	SNP	C	C	T	rs143325433		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr15:72690674C>T	uc002auq.2	+	1	7	c.7C>T	c.(7-9)CGA>TGA	p.R3*	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	3						integral to membrane				central_nervous_system(1)|skin(1)	2						CAAGATGGAGCGAAGGGAACA	0.473			NA											3	17					0	0	0.004672	0	0
TSPAN3	10099	broad.mit.edu	37	15	77348493	77348493	+	Silent	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr15:77348493C>A	uc002bcj.2	-	2	385	c.168G>T	c.(166-168)GTG>GTT	p.V56V	TSPAN3_uc002bck.2_Silent_p.V56V|TSPAN3_uc010ump.1_Intron|TSPAN3_uc010bkx.2_Intron	NM_005724	NP_005715	O60637	TSN3_HUMAN	transmembrane 4 superfamily member 8 isoform 1	56	Helical; (Potential).					integral to membrane					0				all cancers(203;1.14e-19)		CAGCTATGATCACTACAGCAG	0.478			NA											32	98					9.04072e-19	1.23783e-18	0.003271	1	0
SYNM	23336	broad.mit.edu	37	15	99669782	99669782	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr15:99669782C>T	uc002bup.2	+	6	1337	c.1217C>T	c.(1216-1218)TCG>TTG	p.S406L	SYNM_uc002buo.2_Missense_Mutation_p.S406L|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	406	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						TATTCTTCCTCGGCCACTACC	0.502	Pancreas(125;1071 1762 21750 40003 40381)		NA											11	249					0	0	0.001368	0	0
OR4F15	390649	broad.mit.edu	37	15	102358549	102358549	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr15:102358549C>A	uc010uts.1	+	1	160	c.160C>A	c.(160-162)CAT>AAT	p.H54N		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CATGGATGCTCATCTGCACTC	0.403			NA											156	190					4.04931e-71	5.60448e-71	0.00361	1	0
WDR90	197335	broad.mit.edu	37	16	712698	712698	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:712698G>A	uc002cii.1	+	34	4219	c.4165G>A	c.(4165-4167)GAG>AAG	p.E1389K	WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Missense_Mutation_p.E916K|WDR90_uc002cil.1_Intron|WDR90_uc002cim.1_Missense_Mutation_p.E565K|WDR90_uc002cin.1_Missense_Mutation_p.E4K|WDR90_uc010uul.1_5'Flank|WDR90_uc002cio.1_5'Flank|WDR90_uc010bqx.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1389										ovary(1)	1		Hepatocellular(780;0.0218)				CATGGAACACGAGCTGGTGCT	0.627			NA											5	45					0	0	0.001984	0	0
PTX4	390667	broad.mit.edu	37	16	1536429	1536429	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:1536429G>A	uc010uvf.1	-	3	933	c.933C>T	c.(931-933)TAC>TAT	p.Y311Y		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	316	Pentaxin.					extracellular region	metal ion binding				0						CCTCGGTGGCGTAGGACAGGA	0.667			NA											6	51					0	0	0.00308	0	0
CACNG3	10368	broad.mit.edu	37	16	24372717	24372717	+	Missense_Mutation	SNP	G	G	T	rs140935639	byFrequency	TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:24372717G>T	uc002dmf.2	+	4	1681	c.481G>T	c.(481-483)GCC>TCC	p.A161S		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	161					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ATCAGCCAACGCCGGAGACCC	0.443			NA											8	143					0.00621372	0.00708549	0.006214	1	0
SETD1A	9739	broad.mit.edu	37	16	30990966	30990966	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:30990966G>C	uc002ead.1	+	14	4545	c.3859G>C	c.(3859-3861)GAG>CAG	p.E1287Q		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1287					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GGACGAGGCCGAGCGCCCTAG	0.726			NA											8	21					0	0	0.004482	0	0
SALL1	6299	broad.mit.edu	37	16	51175080	51175080	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:51175080C>T	uc010vgs.1	-	2	1084	c.1053G>A	c.(1051-1053)CCG>CCA	p.P351P	SALL1_uc010vgr.1_Silent_p.P254P|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	351					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TTTCAGAGGACGGGGTGGTAA	0.507	GBM(103;1352 1446 1855 4775 8890)		NA											4	79					0	0	0.000248	0	0
BBS2	583	broad.mit.edu	37	16	56535364	56535364	+	Missense_Mutation	SNP	T	T	C	rs62035990		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:56535364T>C	uc002ejd.2	-	10	1360	c.1126A>G	c.(1126-1128)ATA>GTA	p.I376V	BBS2_uc010ccg.2_3'UTR	NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	376					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						GCTGGGATTATGCCCCGATGC	0.507			NA							Bardet-Biedl_syndrome				5	145					0	0	0.001168	0	0
DPEP2	64174	broad.mit.edu	37	16	68021890	68021890	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:68021890T>A	uc010cey.2	-	9	1235	c.1071A>T	c.(1069-1071)AAA>AAT	p.K357N	DPEP2_uc002evd.3_Missense_Mutation_p.R362S|DPEP2_uc002eve.2_Missense_Mutation_p.K357N|DPEP2_uc002evf.2_RNA	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	357					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		CCTGAGGGAATCTGTGTGGCC	0.562			NA											4	83					0	0	0.000602	0	0
AP1G1	164	broad.mit.edu	37	16	71823312	71823312	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr16:71823312C>T	uc010cgg.2	-	2	385	c.71G>A	c.(70-72)CGA>CAA	p.R24Q	AP1G1_uc002fba.2_Missense_Mutation_p.R24Q|AP1G1_uc002fbb.2_Missense_Mutation_p.R47Q|AP1G1_uc010vmg.1_RNA|AP1G1_uc010vmh.1_Missense_Mutation_p.R106Q	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	24					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				GATCATTTCTCGTTCTTCAGC	0.468			NA											6	88					0	0	0.004482	0	0
OR3A4	390756	broad.mit.edu	37	17	3214548	3214548	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:3214548G>T	uc002fvi.2	+	1	1010	c.944G>T	c.(943-945)GGC>GTC	p.G315V		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						GTGTCTCCAGGCCCACCAGTG	0.572			NA											14	70					7.93312e-07	9.93591e-07	0.00245	1	0
GPS2	2874	broad.mit.edu	37	17	7216947	7216947	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:7216947G>A	uc002gfv.1	-	6	837	c.574C>T	c.(574-576)CAG>TAG	p.Q192*	GPS2_uc002gfw.1_Nonsense_Mutation_p.Q154*|GPS2_uc002gfx.1_Nonsense_Mutation_p.Q192*|NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_Nonsense_Mutation_p.Q192*	NM_004489	NP_004480	Q13227	GPS2_HUMAN	G protein pathway suppressor 2	192					cell cycle|inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter	transcriptional repressor complex	GTPase inhibitor activity|protein binding|transcription corepressor activity			ovary(2)|pancreas(1)	3		Prostate(122;0.157)				GGTGGGGGCTGAGCAGTCCCA	0.577			NA									OREG0024133	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	76					0	0	0.000978	0	0
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576	by1000genomes	TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:7577120C>T	uc002gim.2	-	8	1012	c.818G>A	c.(817-819)CGT>CAT	p.R273H	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141H|TP53_uc010cng.1_Missense_Mutation_p.R141H|TP53_uc002gii.1_Missense_Mutation_p.R141H|TP53_uc010cnh.1_Missense_Mutation_p.R273H|TP53_uc010cni.1_Missense_Mutation_p.R273H|TP53_uc002gij.2_Missense_Mutation_p.R273H	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(469)|p.R273C(394)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGCACAAACACGCACCTCAAA	0.542	Pancreas(47;798 1329 9957 10801)	R273H(NCIH1793_LUNG)|R273H(MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(PANC1_PANCREAS)|R273H(NCIH508_LARGE_INTESTINE)|R273H(NCIH1975_LUNG)|R273H(U251MG_CENTRAL_NERVOUS_SYSTEM)|R273H(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273H(NCIH2405_LUNG)|R273H(HEC59_ENDOMETRIUM)|R273H(NCIH1155_LUNG)|R273H(HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(EN_ENDOMETRIUM)|R273H(SNB19_CENTRAL_NERVOUS_SYSTEM)|R273H(MDAMB468_BREAST)|R273H(SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(SW620_LARGE_INTESTINE)|R273H(SUIT2_PANCREAS)|R273H(SW480_LARGE_INTESTINE)|R273H(SKMEL30_SKIN)|R273H(OC314_OVARY)|R273H(HEC6_ENDOMETRIUM)|R273H(HT29_LARGE_INTESTINE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			3	17					0	0	0.004672	0	0
SUPT6H	6830	broad.mit.edu	37	17	27016385	27016385	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:27016385A>G	uc002hby.2	+	25	3238	c.3148A>G	c.(3148-3150)ATT>GTT	p.I1050V	SUPT6H_uc010crt.2_Missense_Mutation_p.I1050V|SUPT6H_uc002hbz.1_Translation_Start_Site	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1050					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					TGACTCATATATTGAAGTCCT	0.388			NA											4	69					0	0	0.000602	0	0
G6PC	2538	broad.mit.edu	37	17	41063209	41063209	+	Nonsense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:41063209C>G	uc002icb.1	+	5	919	c.840C>G	c.(838-840)TAC>TAG	p.Y280*	G6PC_uc010whf.1_3'UTR	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	280	Cytoplasmic (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CCAGCATGTACAGGGAGAGCT	0.572			NA							Glycogen_Storage_Disease_type_Ia				4	39					0	0	0.000248	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47117317	47117317	+	Splice_Site	SNP	A	A	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:47117317A>C	uc002iom.2	+	7	1018	c.684_splice	c.e7-2	p.K228_splice	IGF2BP1_uc010dbj.2_Intron	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding						CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						TGTGGCCCCCAGGATAGACGT	0.557	Esophageal Squamous(198;1041 2123 8248 37119 38268)		NA											24	55					0	0	0.005443	0	0
FAM117A	81558	broad.mit.edu	37	17	47799892	47799892	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:47799892G>A	uc002ipk.2	-	3	500	c.431C>T	c.(430-432)GCA>GTA	p.A144V	FAM117A_uc010wlz.1_5'UTR	NM_030802	NP_110429	Q9C073	F117A_HUMAN	family with sequence similarity 117, member A	144										ovary(1)	1						GCCCCAGGATGCTGAGCGCTT	0.572			NA											3	20					0	0	0.000248	0	0
PPM1E	22843	broad.mit.edu	37	17	57057436	57057436	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:57057436T>A	uc002iwx.2	+	7	1439	c.1312T>A	c.(1312-1314)TAT>AAT	p.Y438N	PPM1E_uc010ddd.2_Missense_Mutation_p.Y201N	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	447	PP2C-like.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			TGATGGCTTCTATGACACCGT	0.493			NA											8	43					0	0	0.00308	0	0
CD300LD	100131439	broad.mit.edu	37	17	72588302	72588302	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:72588302C>T	uc002jkz.2	-	1	69	c.40G>A	c.(40-42)GGT>AGT	p.G14S	C17orf77_uc002jla.1_Silent_p.T39T	NM_001115152	NP_001108624	Q6UXZ3	CLM4_HUMAN	CD300 molecule-like family member d precursor	14						integral to membrane|plasma membrane	receptor activity				0						CCACACTCACCTGGGAGGATG	0.552			NA											8	58					0	0	0.008291	0	0
ZNF521	25925	broad.mit.edu	37	18	22805026	22805026	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr18:22805026G>A	uc002kvk.2	-	4	3103	c.2856C>T	c.(2854-2856)CAC>CAT	p.H952H	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.H952H|ZNF521_uc002kvl.2_Silent_p.H732H	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	952	C2H2-type 22.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					CAGGGCCTAGGTGGGTCTGCA	0.468			NA	T	PAX5	ALL								4	88					0	0	0.000248	0	0
CHST9	83539	broad.mit.edu	37	18	24497220	24497220	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr18:24497220C>T	uc002kwd.2	-	5	533	c.335G>A	c.(334-336)AGT>AAT	p.S112N	C18orf16_uc002kwb.2_Intron|C18orf16_uc010xbm.1_Intron|CHST9_uc002kwc.2_Missense_Mutation_p.S27N|CHST9_uc002kwe.2_Missense_Mutation_p.S112N	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	112	Lumenal (Potential).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					TTGTGAATGACTGGTCTTTGT	0.403			NA											4	228					0	0	0.001984	0	0
DSC1	1823	broad.mit.edu	37	18	28710644	28710644	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr18:28710644G>C	uc002kwn.2	-	16	2780	c.2518C>G	c.(2518-2520)CAT>GAT	p.H840D	DSC1_uc002kwm.2_3'UTR|uc002kwo.1_5'Flank	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	840	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CAATGTTTATGCTCCTCATCT	0.388			NA											4	81					0	0	0.000248	0	0
ASXL3	80816	broad.mit.edu	37	18	31319654	31319655	+	Missense_Mutation	DNP	GA	GA	TG			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	GA	GA	-	-	GA	GA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr18:31319654_31319655GA>TG	uc010dmg.1	+	11	2341_2342	c.2286_2287GA>TG	c.(2284-2289)GAGAGA>GATGGA	p.762_763ER>DG	ASXL3_uc002kxq.2_Missense_Mutation_p.469_470ER>DG	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	762_763	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CCATAAATGAGAGAATGGCACA	0.465			NA											5	62					0	0	0.004672	0	0
CNDP1	84735	broad.mit.edu	37	18	72247453	72247453	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr18:72247453A>T	uc002llq.2	+	10	1466	c.1255A>T	c.(1255-1257)ATT>TTT	p.I419F	CNDP1_uc002lls.2_Missense_Mutation_p.I222F	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	419					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		ACACCCGTGGATTGCAAATAT	0.448	Melanoma(32;1029 1042 25286 38395 44237)		NA											4	43					0	0	0.000248	0	0
GALR1	2587	broad.mit.edu	37	18	74968163	74968163	+	Missense_Mutation	SNP	A	A	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr18:74968163A>C	uc002lms.3	+	2	1213	c.716A>C	c.(715-717)GAA>GCA	p.E239A		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	239	Cytoplasmic (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		AAGAAGTCTGAAGCATCCAAG	0.353			NA											8	70					0	0	0.006214	0	0
ZNF57	126295	broad.mit.edu	37	19	2917901	2917901	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:2917901A>G	uc002lwr.2	+	4	1430	c.1282A>G	c.(1282-1284)ACC>GCC	p.T428A	ZNF57_uc010xha.1_Missense_Mutation_p.T396A	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	428	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGTGGAAAAACCTTCACTTG	0.453	NSCLC(150;910 1964 4303 10464 26498)		NA											3	87					0	0	0.004672	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830571	7830571	+	Missense_Mutation	SNP	G	G	A	rs142098305	by1000genomes	TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:7830571G>A	uc002mih.2	+	4	380	c.262G>A	c.(262-264)GCA>ACA	p.A88T	CLEC4M_uc010xjv.1_Missense_Mutation_p.A60T|CLEC4M_uc002mhy.2_Missense_Mutation_p.A32T|CLEC4M_uc010xjw.1_Missense_Mutation_p.A67T|CLEC4M_uc010dvt.2_Missense_Mutation_p.A88T|CLEC4M_uc010dvs.2_Missense_Mutation_p.A87T|CLEC4M_uc010xjx.1_Missense_Mutation_p.A60T|CLEC4M_uc002mhz.2_Missense_Mutation_p.A88T|CLEC4M_uc002mic.2_Missense_Mutation_p.A60T|CLEC4M_uc002mia.2_Missense_Mutation_p.A67T	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	88	Extracellular (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						CGAGCAAGACGCAATCTACCA	0.448			NA											4	104					0	0	0.000602	0	0
CYP4F12	66002	broad.mit.edu	37	19	15789145	15789145	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:15789145G>A	uc002nbl.2	+	3	334	c.273G>A	c.(271-273)TGG>TGA	p.W91*	CYP4F12_uc010xoo.1_Nonsense_Mutation_p.W91*|CYP4F12_uc010xop.1_Nonsense_Mutation_p.W91*	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					TTACGATATGGCTGGGTCCCA	0.542			NA											7	137					0	0	0.008291	0	0
ZNF536	9745	broad.mit.edu	37	19	31040325	31040325	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:31040325G>A	uc002nsu.1	+	4	3937	c.3799G>A	c.(3799-3801)GTC>ATC	p.V1267I	ZNF536_uc010edd.1_Missense_Mutation_p.V1267I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CATGCTGTCGGTCCTCAGGGC	0.582			NA											3	22					0	0	0.004672	0	0
HPN	3249	broad.mit.edu	37	19	35556931	35556931	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:35556931A>G	uc002nxq.1	+	13	1455	c.1210A>G	c.(1210-1212)ATA>GTA	p.I404V	HPN_uc002nxr.1_Missense_Mutation_p.I404V|HPN_uc002nxs.1_Missense_Mutation_p.I246V|HPN_uc010xsh.1_Missense_Mutation_p.I373V|HPN_uc002nxt.1_Missense_Mutation_p.I288V|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	404	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	CTTCCAGGCCATAAAGGTGAA	0.562			NA											9	115					0	0	0.006214	0	0
GRLF1	2909	broad.mit.edu	37	19	47422272	47422272	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:47422272C>T	uc010ekv.2	+	1	340	c.340C>T	c.(340-342)CAG>TAG	p.Q114*		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	114					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		CACGGCCCTGCAGCCCTATAT	0.498			NA											14	99					0	0	0.001855	0	0
CEACAM18	729767	broad.mit.edu	37	19	51983917	51983917	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:51983917G>T	uc002pwv.1	+	3	566	c.566G>T	c.(565-567)GGC>GTC	p.G189V		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	189						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AGAGCAACCGGCTGGCTGGAG	0.453			NA											5	68					5.18039e-06	6.40424e-06	0.00308	1	0
ZNF154	7710	broad.mit.edu	37	19	58214004	58214004	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:58214004G>A	uc010euf.2	-	3	553	c.313C>T	c.(313-315)CTC>TTC	p.L105F	ZNF776_uc002qpx.2_Intron|ZNF154_uc002qpy.2_RNA	NM_001085384	NP_001078853	Q13106	ZN154_HUMAN	zinc finger protein 154	105	C2H2-type 1; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGTTGATGGAGAAATCCCAAC	0.517			NA											5	59					0	0	0.000602	0	0
APOB	338	broad.mit.edu	37	2	21245798	21245798	+	Silent	SNP	G	G	A	rs72653068		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:21245798G>A	uc002red.2	-	18	2849	c.2721C>T	c.(2719-2721)CAC>CAT	p.H907H		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	907	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GACCCGACTCGTGGAAGAAGT	0.507			NA											9	68					0	0	0.008291	0	0
CGREF1	10669	broad.mit.edu	37	2	27324340	27324340	+	Silent	SNP	G	G	A	rs11893427		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:27324340G>A	uc010eys.1	-	6	901	c.759C>T	c.(757-759)CCC>CCT	p.P253P	CGREF1_uc010ylf.1_Intron|CGREF1_uc002rip.1_Intron|CGREF1_uc002riq.2_Silent_p.P253P|CGREF1_uc010eyr.1_Silent_p.P375P|CGREF1_uc002rir.1_Silent_p.P253P|CGREF1_uc002ris.2_Missense_Mutation_p.P237L	NM_006569	NP_006560	Q99674	CGRE1_HUMAN	cell growth regulator with EF-hand domain 1	253					cell adhesion|cell cycle arrest|negative regulation of cell proliferation|response to stress	extracellular region	calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCTGGGCCCGGGGGCATCTC	0.706			NA											3	78					0	0	0.000602	0	0
SLC8A1	6546	broad.mit.edu	37	2	40657346	40657346	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:40657346G>A	uc002rrx.2	-	1	99	c.75C>T	c.(73-75)CTC>CTT	p.L25L	SLC8A1_uc002rry.2_Silent_p.L25L|SLC8A1_uc002rrz.2_Silent_p.L25L|SLC8A1_uc002rsa.2_Silent_p.L25L|SLC8A1_uc002rsd.3_Silent_p.L25L|SLC8A1_uc002rsb.1_Silent_p.L25L|SLC8A1_uc010fan.1_Silent_p.L25L|SLC8A1_uc002rsc.1_Silent_p.L25L	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	25					cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GGGAAAATAAGAGACTCACAG	0.408			NA											8	102					0	0	0.004482	0	0
PLEK	5341	broad.mit.edu	37	2	68608012	68608012	+	Missense_Mutation	SNP	G	G	C	rs144599110		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:68608012G>C	uc002sen.3	+	3	518	c.356G>C	c.(355-357)CGA>CCA	p.R119P	PLEK_uc010fde.2_Missense_Mutation_p.R119P	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	119					actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		AGGTCCATTCGACTGCCAGAA	0.458			NA											7	214					0	0	0.006214	0	0
DYSF	8291	broad.mit.edu	37	2	71795372	71795372	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:71795372C>T	uc002sie.2	+	26	3090	c.2714C>T	c.(2713-2715)TCT>TTT	p.S905F	DYSF_uc010feg.2_Missense_Mutation_p.S936F|DYSF_uc010feh.2_Missense_Mutation_p.S891F|DYSF_uc002sig.3_Missense_Mutation_p.S891F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.S905F|DYSF_uc010fef.2_Missense_Mutation_p.S922F|DYSF_uc010fei.2_Missense_Mutation_p.S922F|DYSF_uc010fek.2_Missense_Mutation_p.S923F|DYSF_uc010fej.2_Missense_Mutation_p.S892F|DYSF_uc010fel.2_Missense_Mutation_p.S892F|DYSF_uc010feo.2_Missense_Mutation_p.S937F|DYSF_uc010fem.2_Missense_Mutation_p.S906F|DYSF_uc010fen.2_Missense_Mutation_p.S923F|DYSF_uc002sif.2_Missense_Mutation_p.S906F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	905	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCCAAGTTTTCTGACGTCACG	0.592			NA											9	337					0	0	0.008291	0	0
C2orf3	6936	broad.mit.edu	37	2	75928338	75928338	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:75928338C>T	uc002sno.2	-	4	825	c.695G>A	c.(694-696)AGG>AAG	p.R232K	C2orf3_uc010ffs.2_5'UTR|C2orf3_uc002snn.2_Missense_Mutation_p.R63K|C2orf3_uc010fft.2_5'UTR	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	232					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						AACTGCTTTCCTCATTTGCTG	0.254	Esophageal Squamous(141;1502 1784 15043 37622 47064)		NA											3	40					0	0	0.000248	0	0
FABP1	2168	broad.mit.edu	37	2	88424034	88424034	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:88424034G>A	uc002sst.1	-	3	354	c.312C>T	c.(310-312)CTC>CTT	p.L104L	FABP1_uc002ssu.2_Silent_p.L104L	NM_001443	NP_001434	P07148	FABPL_HUMAN	fatty acid binding protein 1, liver	104					organ morphogenesis						0						TGTCGCCGTTGAGTTCGGTCA	0.522			NA											4	85					0	0	0.000602	0	0
IL1F5	26525	broad.mit.edu	37	2	113820196	113820196	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:113820196C>T	uc002tis.2	+	5	543	c.410C>T	c.(409-411)CCC>CTC	p.P137L	IL1F5_uc002tit.2_Missense_Mutation_p.P137L	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	137						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						ACCCAGCTTCCCGAGAATGGT	0.627			NA											3	67					0	0	0.000248	0	0
SAP130	79595	broad.mit.edu	37	2	128747338	128747338	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:128747338G>A	uc002tpp.2	-	13	1790	c.1658C>T	c.(1657-1659)TCG>TTG	p.S553L	SAP130_uc002tpn.2_Missense_Mutation_p.S314L|SAP130_uc002tpo.2_Missense_Mutation_p.S298L|SAP130_uc010fmd.2_Missense_Mutation_p.S553L|SAP130_uc002tpq.1_Missense_Mutation_p.S526L	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	553					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TCGAGCATGCGATGCATCCAC	0.572			NA											6	63					0	0	0.001984	0	0
POTEE	445582	broad.mit.edu	37	2	132021858	132021858	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:132021858G>A	uc002tsn.2	+	15	2882	c.2830G>A	c.(2830-2832)GAT>AAT	p.D944N	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.D544N|POTEE_uc002tsl.2_Missense_Mutation_p.D526N|POTEE_uc010fmy.1_Missense_Mutation_p.D408N	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	944	Actin-like.						ATP binding				0						CGAGCTGCCCGATGGCCAGGT	0.602			NA											4	148					0	0	0.000602	0	0
LCT	3938	broad.mit.edu	37	2	136575248	136575248	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:136575248C>G	uc002tuu.1	-	6	1381	c.1370G>C	c.(1369-1371)TGG>TCG	p.W457S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	457	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GATCCGGGACCAGGAGATGGA	0.627			NA											9	57					0	0	0.008291	0	0
TNFAIP6	7130	broad.mit.edu	37	2	152222726	152222726	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:152222726C>A	uc002txk.2	+	3	465	c.389C>A	c.(388-390)CCA>CAA	p.P130Q		NM_007115	NP_009046	P98066	TSG6_HUMAN	tumor necrosis factor, alpha-induced protein 6	130					cell adhesion|cell-cell signaling|inflammatory response|signal transduction		hyaluronic acid binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		TGCTACAACCCACACGGTGTG	0.373			NA											4	50					0.00024832	0.000297361	0.000248	1	0
GALNT13	114805	broad.mit.edu	37	2	155252568	155252568	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:155252568A>G	uc002tyr.3	+	10	1789	c.1222A>G	c.(1222-1224)AAG>GAG	p.K408E	GALNT13_uc002tyt.3_Missense_Mutation_p.K408E|GALNT13_uc010foc.1_Missense_Mutation_p.K227E|GALNT13_uc010fod.2_Missense_Mutation_p.K161E	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	408	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TCTGAAGTGTAAGCCCTTTTC	0.373			NA											5	30					0	0	0.001984	0	0
KCNJ3	3760	broad.mit.edu	37	2	155566211	155566211	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:155566211C>A	uc002tyv.1	+	2	994	c.799C>A	c.(799-801)CCC>ACC	p.P267T	KCNJ3_uc010zce.1_Intron	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	267	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TCTTGTGTCCCCCCTCACAAT	0.488			NA											8	65					1.06961e-07	1.35745e-07	0.00308	1	0
ERMN	57471	broad.mit.edu	37	2	158182024	158182024	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:158182024C>T	uc002tzh.2	-	1	393	c.131G>A	c.(130-132)AGG>AAG	p.R44K	ERMN_uc010zcj.1_5'Flank|ERMN_uc010zck.1_Missense_Mutation_p.R44K|ERMN_uc002tzi.2_Missense_Mutation_p.R57K	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	44						cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						GGGTTCTACCCTGTAGTGTGG	0.468			NA											8	104					0	0	0.008291	0	0
WDSUB1	151525	broad.mit.edu	37	2	160139448	160139448	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:160139448G>A	uc002uaj.3	-	2	282	c.133C>T	c.(133-135)CTG>TTG	p.L45L	WDSUB1_uc002uak.3_Silent_p.L45L|WDSUB1_uc002ual.3_Silent_p.L45L|WDSUB1_uc002uam.3_Silent_p.L45L|WDSUB1_uc010foo.2_Silent_p.L45L	NM_152528	NP_689741	Q8N9V3	WSDU1_HUMAN	WD repeat, sterile alpha motif and U-box domain	45	WD 1.					ubiquitin ligase complex	ubiquitin-protein ligase activity				0						GAATGTGGCAGTTCAGTAAAG	0.468			NA											3	86					0	0	0.004672	0	0
BAZ2B	29994	broad.mit.edu	37	2	160268905	160268906	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:160268905_160268906CC>AA	uc002uao.2	-	14	2969_2970	c.2617_2618GG>TT	c.(2617-2619)GGC>TTC	p.G873F	BAZ2B_uc002uap.2_Missense_Mutation_p.G837F|BAZ2B_uc002uaq.1_Missense_Mutation_p.G703F|BAZ2B_uc002uar.1_Missense_Mutation_p.G446F	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	873					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TTCAGCATTGCCAACATTTGGA	0.431			NA											4	67					0	0	0.004672	0	0
ITGB6	3694	broad.mit.edu	37	2	161056565	161056565	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:161056565C>T	uc002ubh.2	-	1	26	c.10G>A	c.(10-12)GAA>AAA	p.E4K	ITGB6_uc010fow.1_Intron|ITGB6_uc010fou.2_Missense_Mutation_p.E4K|ITGB6_uc010zcq.1_5'UTR|ITGB6_uc010fov.1_Missense_Mutation_p.E4K	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	4					cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						CAAAGCAGTTCAATCCCCATT	0.388			NA											12	85					0	0	0.003163	0	0
EVX2	344191	broad.mit.edu	37	2	176948209	176948209	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:176948209C>A	uc010zeu.1	-	1	482	c.296G>T	c.(295-297)CGC>CTC	p.R99L		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	99						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		CGGCTTCTTGCGGCTCTCGGC	0.652			NA											3	54					0.004672	0.00534343	0.004672	1	0
ITGA4	3676	broad.mit.edu	37	2	182389982	182389982	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:182389982T>C	uc002unu.2	+	21	3066	c.2303T>C	c.(2302-2304)ATA>ACA	p.I768T	ITGA4_uc010frj.1_Missense_Mutation_p.I250T|ITGA4_uc002unv.2_Missense_Mutation_p.I13T	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	768	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ACTGTAGCAATACCTTTAAAA	0.358			NA											6	46					0	0	0.001984	0	0
FN1	2335	broad.mit.edu	37	2	216262528	216262528	+	Missense_Mutation	SNP	A	A	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:216262528A>C	uc002vfa.2	-	22	3658	c.3392T>G	c.(3391-3393)GTG>GGG	p.V1131G	FN1_uc002vfb.2_Missense_Mutation_p.V1131G|FN1_uc002vfc.2_Missense_Mutation_p.V1131G|FN1_uc002vfd.2_Missense_Mutation_p.V1131G|FN1_uc002vfe.2_Missense_Mutation_p.V1131G|FN1_uc002vff.2_Missense_Mutation_p.V1131G|FN1_uc002vfg.2_Missense_Mutation_p.V1131G|FN1_uc002vfh.2_Missense_Mutation_p.V1131G|FN1_uc002vfi.2_Missense_Mutation_p.V1131G|FN1_uc002vfj.2_Missense_Mutation_p.V1131G	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1131	|Fibronectin type-III 6.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTCTGAAGTCACTTCTCGTGG	0.502			NA											5	87					0	0	0.001168	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446843	226446843	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:226446843A>G	uc002voe.2	+	4	885	c.710A>G	c.(709-711)GAC>GGC	p.D237G	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.D7G	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	237										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		CCCGCGGGAGACCCCGAGGAA	0.597			NA											9	91					0	0	0.006214	0	0
GPR35	2859	broad.mit.edu	37	2	241570285	241570285	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:241570285G>A	uc002vzs.1	+	1	1491	c.916G>A	c.(916-918)GTG>ATG	p.V306M	GPR35_uc010fzh.1_Missense_Mutation_p.V337M|GPR35_uc010fzi.1_Missense_Mutation_p.V337M	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	306	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		CTCTCTGTGCGTGACCCTCGC	0.642			NA											11	67					0	0	0.001368	0	0
SEL1L2	80343	broad.mit.edu	37	20	13850153	13850153	+	Nonsense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:13850153G>C	uc010gcf.2	-	14	1333	c.1251C>G	c.(1249-1251)TAC>TAG	p.Y417*	SEL1L2_uc002woq.3_Nonsense_Mutation_p.Y278*|SEL1L2_uc010zrl.1_Nonsense_Mutation_p.Y417*|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	417	Extracellular (Potential).|Sel1-like 8.					integral to membrane	binding			ovary(2)	2						ACTTACAGTAGTACATGAAGC	0.393			NA											9	48					0	0	0.008291	0	0
MACROD2	140733	broad.mit.edu	37	20	13983012	13983012	+	Nonsense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:13983012C>G	uc002wou.2	+	2	389	c.125C>G	c.(124-126)TCA>TGA	p.S42*	MACROD2_uc002wot.2_Nonsense_Mutation_p.S42*|MACROD2_uc002wos.2_RNA	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	42											0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				AGCATTCTATCATGGAAGGAG	0.378			NA											6	117					0	0	0.001984	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18123402	18123402	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:18123402A>T	uc002wqj.2	+	2	720	c.98A>T	c.(97-99)GAG>GTG	p.E33V	CSRP2BP_uc002wqk.2_5'Flank	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	33					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						GGTGAAGTGGAGGGAGAGACG	0.542			NA											9	71					0	0	0.008291	0	0
CST8	10047	broad.mit.edu	37	20	23472354	23472354	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:23472354C>A	uc002wth.1	+	2	407	c.50C>A	c.(49-51)GCC>GAC	p.A17D		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	17						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					ATTCCCCTGGCCCTGGTGGCC	0.572			NA											7	95					0.00307968	0.0035758	0.00308	1	0
ACTR5	79913	broad.mit.edu	37	20	37394929	37394929	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:37394929A>G	uc002xjd.2	+	7	1367	c.1342A>G	c.(1342-1344)AGA>GGA	p.R448G		NM_024855	NP_079131	Q9H9F9	ARP5_HUMAN	ARP5 actin-related protein 5 homolog	448					DNA recombination|double-strand break repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent|UV-damage excision repair	cytoplasm|Ino80 complex	ATP binding|protein binding				0		Myeloproliferative disorder(115;0.00878)				TGGGACAGAAAGAATTCGAGC	0.413			NA											10	102					0	0	0.008291	0	0
TP53TG5	27296	broad.mit.edu	37	20	44003715	44003715	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:44003715G>A	uc002xny.2	-	4	813	c.732C>T	c.(730-732)TCC>TCT	p.S244S	SYS1_uc002xnw.1_3'UTR|SYS1-DBNDD2_uc002xnx.2_Intron	NM_014477	NP_055292	Q9Y2B4	T53G5_HUMAN	TP53-target gene 5 protein	244					intracellular signal transduction|negative regulation of cell growth	cytoplasm|nucleus				central_nervous_system(1)	1						CAAGTGATGCGGAGCAGAAGC	0.612			NA											11	93					0	0	0.000978	0	0
PREX1	57580	broad.mit.edu	37	20	47262425	47262425	+	Nonsense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:47262425G>C	uc002xtw.1	-	26	3499	c.3476C>G	c.(3475-3477)TCA>TGA	p.S1159*	PREX1_uc002xtv.1_Nonsense_Mutation_p.S456*	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1159					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GTCGTGGCCTGAGTCCTCCTG	0.607			NA											2	41					0	0	0.004672	0	0
MOCS3	27304	broad.mit.edu	37	20	49575502	49575502	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr20:49575502A>T	uc002xvy.1	+	1	140	c.123A>T	c.(121-123)GAA>GAT	p.E41D	DPM1_uc002xvw.1_5'Flank|DPM1_uc002xvx.1_5'Flank	NM_014484	NP_055299	O95396	MOCS3_HUMAN	molybdenum cofactor synthesis 3	41					enzyme active site formation via L-cysteine persulfide|Mo-molybdopterin cofactor biosynthetic process|tRNA thio-modification|tRNA wobble uridine modification|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|nucleotidyltransferase activity|protein binding|thiosulfate sulfurtransferase activity|URM1 activating enzyme activity			skin(2)|ovary(1)	3						CGCAGCCAGAACGGCTGGTTC	0.617			NA											9	79					0	0	0.008291	0	0
C22orf42	150297	broad.mit.edu	37	22	32555049	32555049	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr22:32555049C>A	uc003amd.2	-	1	195	c.154G>T	c.(154-156)GAT>TAT	p.D52Y		NM_001010859	NP_001010859	Q6IC83	CV042_HUMAN	chromosome 22 open reading frame 42	52										ovary(1)|skin(1)	2						GCTTTCAAATCCAATTTGGCA	0.542			NA											9	161					4.3838e-07	5.50859e-07	0.001855	1	0
APOL4	80832	broad.mit.edu	37	22	36587493	36587493	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr22:36587493A>G	uc003aox.2	-	6	911	c.686T>C	c.(685-687)GTG>GCG	p.V229A	APOL4_uc003aow.2_Missense_Mutation_p.V226A|APOL4_uc010gww.2_Missense_Mutation_p.V71A	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	229					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						AAAAGAAAGCACATTGGGTGT	0.468			NA											4	57					0	0	0.000602	0	0
EIF3L	51386	broad.mit.edu	37	22	38274119	38274119	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr22:38274119A>G	uc003auf.2	+	11	1603	c.1516A>G	c.(1516-1518)ATC>GTC	p.I506V	EIF3L_uc003aue.1_Missense_Mutation_p.I506V|EIF3L_uc011ann.1_Missense_Mutation_p.I458V|EIF3L_uc003aug.2_Missense_Mutation_p.I398V|EIF3L_uc003auh.2_Missense_Mutation_p.I239V	NM_016091	NP_057175	Q9Y262	EIF3L_HUMAN	eukaryotic translation initiation factor 3	506						eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1						GACCAGCGGTATCTCAGCCCT	0.507			NA											3	95					0	0	0.000602	0	0
SCN11A	11280	broad.mit.edu	37	3	38936043	38936043	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:38936043T>C	uc011ays.1	-	15	3015	c.2816A>G	c.(2815-2817)CAA>CGA	p.Q939R	SCN11A_uc010hhn.1_Missense_Mutation_p.Q55R	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	939					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGGCTCAGGTTGTGTGATGCG	0.493			NA											21	211					0	0	0.003954	0	0
LIMD1	8994	broad.mit.edu	37	3	45715878	45715878	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:45715878A>G	uc003coq.2	+	7	1917	c.1868A>G	c.(1867-1869)TAC>TGC	p.Y623C		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	623	LIM zinc-binding 3.|Necessary for nuclear localization.				cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		GACAGAGACTACCACGTGGAG	0.577			NA											8	43					0	0	0.000978	0	0
IP6K1	9807	broad.mit.edu	37	3	49765625	49765625	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:49765625C>T	uc003cxm.1	-	5	1018	c.703G>A	c.(703-705)GAC>AAC	p.D235N	IP6K1_uc003cxn.1_Missense_Mutation_p.D70N|IP6K1_uc011bcv.1_Missense_Mutation_p.D70N|IP6K1_uc003cxo.2_Missense_Mutation_p.D235N	NM_153273	NP_695005	Q92551	IP6K1_HUMAN	inositol hexakisphosphate kinase 1 isoform 1	235					phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						GCTGACGCGTCATCGCCATGC	0.617			NA											13	64					0	0	0.001855	0	0
OR5K1	26339	broad.mit.edu	37	3	98188893	98188893	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:98188893T>A	uc003dsm.2	+	1	473	c.473T>A	c.(472-474)ATT>AAT	p.I158N		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						CATTCCATGATTCATGTAGGG	0.428			NA											18	176					0	0	0.008871	0	0
ZBTB11	27107	broad.mit.edu	37	3	101390835	101390835	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:101390835T>C	uc003dve.3	-	2	763	c.533A>G	c.(532-534)CAT>CGT	p.H178R	ZBTB11_uc003dvf.2_Missense_Mutation_p.H178R	NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CACAAGTTCATGTTTGGATAC	0.393			NA											8	61					0	0	0.000978	0	0
KIAA2018	205717	broad.mit.edu	37	3	113378654	113378654	+	Silent	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:113378654T>C	uc003eam.2	-	7	2286	c.1875A>G	c.(1873-1875)CCA>CCG	p.P625P	KIAA2018_uc003eal.2_Silent_p.P569P	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	625					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						CAAAAGTCTGTGGTGTTGGAA	0.433			NA											15	95					0	0	0.00499	0	0
IQCB1	9657	broad.mit.edu	37	3	121547451	121547451	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:121547451G>A	uc010hre.1	-	4	344	c.129C>T	c.(127-129)AGC>AGT	p.S43S	IQCB1_uc003eek.2_Silent_p.S43S|IQCB1_uc010hrf.1_RNA	NM_001023570	NP_001018864	Q15051	IQCB1_HUMAN	IQ motif containing B1 isoform a	43					cilium assembly|maintenance of organ identity|photoreceptor cell maintenance	centrosome|photoreceptor connecting cilium	calmodulin binding				0				GBM - Glioblastoma multiforme(114;0.0983)		TCAACTCTGAGCTTCCTAAAG	0.308			NA											5	29					0	0	0.001168	0	0
RPN1	6184	broad.mit.edu	37	3	128345617	128345617	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:128345617T>C	uc003ekr.1	-	6	1171	c.1095A>G	c.(1093-1095)ATA>ATG	p.I365M	RPN1_uc011bkq.1_Missense_Mutation_p.I193M	NM_002950	NP_002941	P04843	RPN1_HUMAN	ribophorin I precursor	365	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|melanosome|oligosaccharyltransferase complex|rough microsome	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(114;0.189)		TCAGAGAATCTATCACTTGTT	0.463			NA	T	EVI1	AML								22	84					0	0	0.00333	0	0
Unknown	0	broad.mit.edu	37	3	129140646	129140646	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:129140646C>A	uc003emg.2	-	2	213	c.50G>T	c.(49-51)GGA>GTA	p.G17V		NM_207307	NP_997190			hypothetical protein LOC90288												NA						CGGGCAGAGTCCTTGGGGTAA	0.507			NA											4	24					0.000602214	0.000712216	0.000602	1	0
ZIC4	84107	broad.mit.edu	37	3	147108886	147108886	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:147108886C>G	uc003ewd.1	-	4	1109	c.836G>C	c.(835-837)AGC>ACC	p.S279T	ZIC4_uc003ewc.1_Missense_Mutation_p.S209T|ZIC4_uc011bno.1_Missense_Mutation_p.S329T	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	279	C2H2-type 5.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						ACGCAGCGAGCTGGGGTGCGT	0.642			NA											6	34					0	0	0.001984	0	0
KCNAB1	7881	broad.mit.edu	37	3	156249199	156249199	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:156249199G>A	uc003far.2	+	13	1147	c.1083G>A	c.(1081-1083)GCG>GCA	p.A361A	KCNAB1_uc011bon.1_Silent_p.A332A|KCNAB1_uc003fas.2_Silent_p.A350A|KCNAB1_uc003fat.2_Silent_p.A343A|KCNAB1_uc010hvt.1_Silent_p.A314A|KCNAB1_uc011boo.1_Silent_p.A237A	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	361						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TCCTCCCAGCGTGGTGCCTGA	0.463			NA											6	211					0	0	0.00308	0	0
SI	6476	broad.mit.edu	37	3	164725752	164725752	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:164725752G>T	uc003fei.2	-	36	4276	c.4214C>A	c.(4213-4215)ACA>AAA	p.T1405K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1405	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ATTAGTAGTTGTTCCATTTAC	0.279			NA								HNSCC(35;0.089)			27	82					5.8336e-16	7.93038e-16	0.003271	1	0
BCHE	590	broad.mit.edu	37	3	165547467	165547467	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:165547467C>A	uc003fem.3	-	2	1515	c.1355G>T	c.(1354-1356)CGA>CTA	p.R452L	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	452					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	TTTGGAGGATCGGTGTTCAAA	0.403			NA											13	129					1.67942e-08	2.16735e-08	0.006122	1	0
PIK3CA	5290	broad.mit.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:178936082G>A	uc003fjk.2	+	10	1781	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	542	PI3K helical.		E -> V (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation).|E -> Q (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E542K(481)|p.E542V(8)|p.E542Q(6)|p.E542G(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCCTCTCTCTGAAATCACTGA	0.333	Colon(199;1504 1750 3362 26421 31210 32040)	E542K(SW948_LARGE_INTESTINE)|E542K(T84_LARGE_INTESTINE)|E542K(CAL51_BREAST)|E542K(JHUEM1_ENDOMETRIUM)|E542K(NCIH1341_LUNG)|E542K(VMCUB1_URINARY_TRACT)|E542K(BT483_BREAST)|E542K(HGC27_STOMACH)|E542K(IM95_STOMACH)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			6	54					0	0	0.004482	0	0
ACTL6A	86	broad.mit.edu	37	3	179287926	179287926	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:179287926C>T	uc003fjw.2	+	3	347	c.174C>T	c.(172-174)GGC>GGT	p.G58G	ACTL6A_uc003fjx.2_Silent_p.G16G|ACTL6A_uc003fjy.2_Silent_p.G16G	NM_004301	NP_004292	O96019	ACL6A_HUMAN	actin-like 6A isoform 1	58					chromatin remodeling|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|nervous system development|regulation of growth|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	Ino80 complex|npBAF complex|NuA4 histone acetyltransferase complex|plasma membrane|SWI/SNF complex	ATP binding|chromatin binding			ovary(1)	1	all_cancers(143;3.94e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)			AAATAGATGGCGATAAAGGCA	0.433			NA											12	105					0	0	0.001368	0	0
LAMP3	27074	broad.mit.edu	37	3	182872155	182872155	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:182872155A>G	uc003flh.3	-	2	298	c.74T>C	c.(73-75)ATG>ACG	p.M25T		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	25					cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			TTTTGCTCTCATTTGACTGCC	0.398			NA											8	85					0	0	0.006214	0	0
ABCF3	55324	broad.mit.edu	37	3	183905460	183905460	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:183905460T>A	uc003fmz.2	+	5	490	c.357T>A	c.(355-357)AAT>AAA	p.N119K	ABCF3_uc003fna.2_Missense_Mutation_p.N113K|ABCF3_uc003fnb.2_5'Flank	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	119							ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGACAGTGAATGCAAAGAAGT	0.512			NA											3	87					0	0	0.000248	0	0
POLR2H	5437	broad.mit.edu	37	3	184086079	184086079	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr3:184086079C>G	uc003fok.1	+	5	537	c.450C>G	c.(448-450)TTC>TTG	p.F150L	POLR2H_uc003foj.1_RNA	NM_006232	NP_006223	P52434	RPAB3_HUMAN	RNA polymerase II, polypeptide H	150					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex|nucleolus	DNA-directed RNA polymerase activity|protein binding|zinc ion binding				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGCTAGCCTTCTGAACCTCGC	0.567			NA											7	129					0	0	0.008291	0	0
WHSC1	7468	broad.mit.edu	37	4	1902635	1902635	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr4:1902635G>T	uc003gdz.3	+	2	430	c.254G>T	c.(253-255)CGG>CTG	p.R85L	WHSC1_uc003geb.3_Missense_Mutation_p.R85L|WHSC1_uc003gec.3_Missense_Mutation_p.R85L|WHSC1_uc003ged.3_Missense_Mutation_p.R85L|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Missense_Mutation_p.R85L|WHSC1_uc003gdy.1_Missense_Mutation_p.R85L|WHSC1_uc010icd.1_Missense_Mutation_p.R85L|WHSC1_uc003gea.1_Missense_Mutation_p.R85L|WHSC1_uc010ice.1_Missense_Mutation_p.R85L|WHSC1_uc003geg.1_Missense_Mutation_p.R85L|WHSC1_uc003geh.1_Missense_Mutation_p.R85L	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	85					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		CTTACTTCCCGGGTGTTTAAT	0.537			NA	T	IGH@	MM								16	45					2.35188e-11	3.15235e-11	0.006122	1	0
SHROOM3	57619	broad.mit.edu	37	4	77661790	77661790	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr4:77661790G>C	uc011cbx.1	+	5	3417	c.2464G>C	c.(2464-2466)GGG>CGG	p.G822R	SHROOM3_uc011cbz.1_Missense_Mutation_p.G646R|SHROOM3_uc003hkf.1_Missense_Mutation_p.G697R|SHROOM3_uc003hkg.2_Missense_Mutation_p.G600R	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	822					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CAGTACTTCTGGGAATGACTT	0.547			NA											4	89					0	0	0.000602	0	0
FRAS1	80144	broad.mit.edu	37	4	79440630	79440630	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr4:79440630G>A	uc003hlb.2	+	67	10975	c.10535G>A	c.(10534-10536)AGA>AAA	p.R3512K		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3507	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GTTCTCTGGAGAACAGGTATG	0.468			NA											11	162					0	0	0.001368	0	0
TET2	54790	broad.mit.edu	37	4	106156588	106156588	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr4:106156588A>T	uc003hxk.2	+	3	1875	c.1489A>T	c.(1489-1491)ACT>TCT	p.T497S	TET2_uc011cez.1_Missense_Mutation_p.T518S|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.T497S|TET2_uc003hxi.1_Missense_Mutation_p.T497S	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	497					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		AGGGACAATGACTGTTCCATT	0.443			NA	Mis N|F		MDS								18	72					0	0	0.002299	0	0
GLRA3	8001	broad.mit.edu	37	4	175565021	175565021	+	Silent	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr4:175565021T>C	uc003ity.1	-	10	1814	c.1311A>G	c.(1309-1311)CCA>CCG	p.P437P	GLRA3_uc003itz.1_Silent_p.P422P	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	437	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	AAAAAGCTAATGGGAAGCAGG	0.423			NA											3	57					0	0	0.004672	0	0
GLRA3	8001	broad.mit.edu	37	4	175749923	175749923	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr4:175749923A>G	uc003ity.1	-	1	543	c.40T>C	c.(40-42)TTT>CTT	p.F14L	GLRA3_uc003itz.1_Missense_Mutation_p.F14L|uc003iua.1_5'Flank|uc003iub.1_5'Flank	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	14					synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	CAGAAGTAAAATCCCGAAACT	0.448			NA											3	67					0	0	0.004672	0	0
DNAH5	1767	broad.mit.edu	37	5	13786444	13786444	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:13786444C>T	uc003jfd.2	-	52	8706	c.8664G>A	c.(8662-8664)GAG>GAA	p.E2888E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2888					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGCATCAGCCTCTTCAGATG	0.363			NA							Kartagener_syndrome				5	38					0	0	0.001168	0	0
PRDM9	56979	broad.mit.edu	37	5	23527643	23527643	+	Nonsense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:23527643A>T	uc003jgo.2	+	11	2628	c.2446A>T	c.(2446-2448)AAG>TAG	p.K816*		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	816	C2H2-type 12.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CTTTAGCAATAAGTCACACCT	0.567			NA								HNSCC(3;0.000094)			12	166					0	0	0.001855	0	0
PARP8	79668	broad.mit.edu	37	5	50091199	50091199	+	Nonsense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:50091199C>G	uc003jon.3	+	13	1558	c.1376C>G	c.(1375-1377)TCA>TGA	p.S459*	PARP8_uc011cpz.1_Nonsense_Mutation_p.S351*|PARP8_uc003joo.2_Nonsense_Mutation_p.S459*|PARP8_uc003jop.2_Nonsense_Mutation_p.S459*	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	459						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TCTCTTACCTCAGGGCTTATT	0.448			NA											5	57					0	0	0.000602	0	0
FAM169A	26049	broad.mit.edu	37	5	74137430	74137430	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:74137430C>T	uc003kdm.2	-	2	115	c.72G>A	c.(70-72)ATG>ATA	p.M24I	FAM169A_uc010izm.2_Missense_Mutation_p.M24I|FAM169A_uc003kdl.2_5'UTR	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	24											0						TTAAATCTGACATGTAATCTT	0.393			NA											16	55					0	0	0.006122	0	0
RASA1	5921	broad.mit.edu	37	5	86642487	86642487	+	Splice_Site	SNP	A	A	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:86642487A>C	uc003kiw.2	+	7	1168	c.1050_splice	c.e7-2	p.I350_splice	RASA1_uc010jav.2_Splice_Site|RASA1_uc003kix.2_Splice_Site_p.I173_splice|RASA1_uc011ctv.1_Splice_Site_p.I183_splice|RASA1_uc011ctw.1_Splice_Site_p.I184_splice|RASA1_uc010jaw.2_Splice_Site_p.I172_splice	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1						cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		TCTCTTTTTAAGATGGTTCCA	0.254			NA											4	49					0	0	0.000602	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834232	101834232	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:101834232C>A	uc003knn.2	-	1	489	c.317G>T	c.(316-318)CGC>CTC	p.R106L	SLCO6A1_uc003kno.2_Missense_Mutation_p.R106L|SLCO6A1_uc003knp.2_Missense_Mutation_p.R106L|SLCO6A1_uc003knq.2_Missense_Mutation_p.R106L	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	106	Cytoplasmic (Potential).|Cys-rich.					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CATGAAGCAGCGAATGTTATT	0.547			NA											9	30					0.000442599	0.000528353	0.006214	1	0
PCDHA7	56141	broad.mit.edu	37	5	140216204	140216204	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:140216204G>A	uc003lhq.2	+	1	2236	c.2236G>A	c.(2236-2238)GGG>AGG	p.G746R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.G746R	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	746	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCGCGGTGGGGAGCTGGTC	0.642	NSCLC(160;258 2013 5070 22440 28951)		NA											3	41					0	0	0.004672	0	0
KCTD16	57528	broad.mit.edu	37	5	143853425	143853425	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:143853425C>T	uc003lnm.1	+	4	1664	c.1035C>T	c.(1033-1035)CCC>CCT	p.P345P	KCTD16_uc003lnn.1_Silent_p.P345P	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	345						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			TGGACCGTCCCATCAAGAAGG	0.582			NA											12	58					0	0	0.00245	0	0
PRELID2	153768	broad.mit.edu	37	5	145202687	145202687	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr5:145202687G>C	uc003lnp.1	-	2	139	c.86C>G	c.(85-87)CCC>CGC	p.P29R	PRELID2_uc003lnq.1_Missense_Mutation_p.P29R|PRELID2_uc003lno.1_5'UTR|PRELID2_uc003lnr.1_Missense_Mutation_p.P29R	NM_182960	NP_892005	Q8N945	PRLD2_HUMAN	PRELI domain containing 2 isoform a	29	PRELI/MSF1.										0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTTATCCATGGGGTTGGGGTA	0.318			NA											5	33					0	0	0.000602	0	0
DSP	1832	broad.mit.edu	37	6	7571787	7571787	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:7571787C>T	uc003mxp.1	+	14	2152	c.1873C>T	c.(1873-1875)CAG>TAG	p.Q625*	DSP_uc003mxq.1_Nonsense_Mutation_p.Q625*	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	625	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CCTGGTCATTCAGCTCCCTGG	0.468			NA											11	76					0	0	0.00245	0	0
OR12D2	26529	broad.mit.edu	37	6	29364823	29364823	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:29364823T>C	uc003nmf.3	+	1	408	c.347T>C	c.(346-348)ATG>ACG	p.M116T		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTCGCCGTGATGGCATTTGAC	0.493			NA											6	46					0	0	0.001984	0	0
MSH5	4439	broad.mit.edu	37	6	31709022	31709022	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:31709022C>T	uc003nwv.1	+	3	309	c.230C>T	c.(229-231)CCA>CTA	p.P77L	MSH5_uc003nwt.1_Missense_Mutation_p.P77L|MSH5_uc003nwu.1_Missense_Mutation_p.P77L|MSH5_uc003nww.1_Missense_Mutation_p.P77L|MSH5_uc003nwx.1_Missense_Mutation_p.P77L	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	77					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						CACTTCATGCCAGATGCCCCA	0.478			NA						Direct_reversal_of_damage|MMR					15	171					0	0	0.00245	0	0
HCRTR2	3062	broad.mit.edu	37	6	55145140	55145140	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:55145140C>A	uc003pcl.2	+	6	1318	c.1003C>A	c.(1003-1005)CAT>AAT	p.H335N	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	335	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GATGTTTGCCCATACTGAAGA	0.373			NA											11	131					3.07112e-06	3.80898e-06	0.000978	1	0
C6orf167	253714	broad.mit.edu	37	6	97616094	97616094	+	Silent	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:97616094T>C	uc003ppb.2	-	20	3128	c.2862A>G	c.(2860-2862)GCA>GCG	p.A954A	C6orf167_uc011eaf.1_Silent_p.A914A	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	954					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		CAAAGATTTGTGCCCATGATT	0.368			NA											12	67					0	0	0.000978	0	0
SLC22A16	85413	broad.mit.edu	37	6	110768092	110768092	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:110768092C>G	uc003puf.2	-	3	702	c.635G>C	c.(634-636)CGC>CCC	p.R212P	SLC22A16_uc003pue.2_Missense_Mutation_p.R193P	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	212					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		AAGAAAAAAGCGAGCAGCCAT	0.423			NA											5	58					0	0	0.001168	0	0
C6orf174	387104	broad.mit.edu	37	6	127796879	127796879	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:127796879G>A	uc003qbd.2	-	6	3157	c.2292C>T	c.(2290-2292)GAC>GAT	p.D764D	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	764						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GCCGCGAGTCGTCGTCGCTCT	0.716			NA											7	33					0	0	0.00308	0	0
SLC35D3	340146	broad.mit.edu	37	6	137245321	137245321	+	Nonsense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:137245321C>A	uc003qhe.2	+	2	903	c.738C>A	c.(736-738)TGC>TGA	p.C246*		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	246					carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		CGCTGCACTGCACCTACATCA	0.627			NA											5	39					0.00198382	0.00231749	0.001984	1	0
SYNE1	23345	broad.mit.edu	37	6	152650896	152650896	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:152650896C>G	uc010kiw.2	-	78	15526	c.14924G>C	c.(14923-14925)GGA>GCA	p.G4975A	SYNE1_uc003qot.3_Missense_Mutation_p.G4904A|SYNE1_uc003qou.3_Missense_Mutation_p.G4975A|SYNE1_uc010kiz.2_Missense_Mutation_p.G730A	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4975	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGGATGTCTCCATCCAGCTC	0.463			NA								HNSCC(10;0.0054)			10	65					0	0	0.000978	0	0
SYNE1	23345	broad.mit.edu	37	6	152771825	152771825	+	Silent	SNP	A	A	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:152771825A>C	uc010kiw.2	-	27	3932	c.3330T>G	c.(3328-3330)GCT>GCG	p.A1110A	SYNE1_uc003qot.3_Silent_p.A1117A|SYNE1_uc003qou.3_Silent_p.A1110A|SYNE1_uc010kjb.1_Silent_p.A1093A|SYNE1_uc003qow.2_Silent_p.A405A|SYNE1_uc003qox.1_Silent_p.A626A	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1110	HAT 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGTCAATGGCAGCTCTGAGCT	0.542			NA								HNSCC(10;0.0054)			12	151					0	0	0.001855	0	0
PDE10A	10846	broad.mit.edu	37	6	165746519	165746519	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr6:165746519C>T	uc003qun.2	-	23	2576	c.2335G>A	c.(2335-2337)GAT>AAT	p.D779N	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.D709N|PDE10A_uc003quo.2_Missense_Mutation_p.D789N	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	779					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	AGTGCTCAATCTTCAGATGCA	0.527	Esophageal Squamous(22;308 615 5753 12038 40624)		NA											16	144					0	0	0.008871	0	0
SNX13	23161	broad.mit.edu	37	7	17879517	17879517	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:17879517C>G	uc003stw.1	-	13	1485	c.1272G>C	c.(1270-1272)CAG>CAC	p.Q424H	SNX13_uc003stv.2_Missense_Mutation_p.Q424H|SNX13_uc010kuc.2_Missense_Mutation_p.Q221H			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	424	RGS.				cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					TTCCATCTCTCTGACGACTTA	0.418			NA											5	37					0	0	0.000602	0	0
TARP	445347	broad.mit.edu	37	7	38305263	38305263	+	Silent	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:38305263T>C	uc003tge.1	-	5	821	c.444A>G	c.(442-444)GCA>GCG	p.A148A	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_5'UTR|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						GGGAAACATCTGCATCAAGTT	0.383			NA											27	207					0	0	0.003755	0	0
VWC2	375567	broad.mit.edu	37	7	49842409	49842409	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:49842409G>T	uc003tot.1	+	3	1355	c.799G>T	c.(799-801)GAT>TAT	p.D267Y		NM_198570	NP_940972	Q2TAL6	VWC2_HUMAN	von Willebrand factor C domain containing 2	267	VWFC 2.				negative regulation of BMP signaling pathway|positive regulation of neuron differentiation	basement membrane|extracellular space					0						GTACGAGCCTGATCAGTGCTG	0.572			NA											6	65					3.59834e-05	4.37759e-05	0.001168	1	0
POM121L12	285877	broad.mit.edu	37	7	53104220	53104220	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:53104220G>A	uc003tpz.2	+	1	872	c.856G>A	c.(856-858)GAG>AAG	p.E286K		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	286											0						CTTCGCCCTCGAGGTCACCCA	0.622			NA											8	62					0	0	0.004482	0	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	T	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453			NA											4	88					0	0	0.000602	0	0
PCLO	27445	broad.mit.edu	37	7	82583230	82583230	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:82583230C>A	uc003uhx.2	-	5	7328	c.7039G>T	c.(7039-7041)GTA>TTA	p.V2347L	PCLO_uc003uhv.2_Missense_Mutation_p.V2347L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2278					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGGGCTATTACAGAAGAAGGT	0.433			NA											6	56					0.00198382	0.00231749	0.001984	1	0
ABCB4	5244	broad.mit.edu	37	7	87031509	87031509	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:87031509C>G	uc003uiv.1	-	28	3840	c.3764G>C	c.(3763-3765)GGG>GCG	p.G1255A	ABCB4_uc003uiw.1_Missense_Mutation_p.G1248A|ABCB4_uc003uix.1_Missense_Mutation_p.G1201A	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1255	ABC transporter 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTTGACTCTCCCATTCTGAAA	0.512			NA											10	144					0	0	0.000978	0	0
ADAM22	53616	broad.mit.edu	37	7	87607717	87607717	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:87607717G>T	uc003ujn.2	+	3	392	c.313G>T	c.(313-315)GTG>TTG	p.V105L	ADAM22_uc003uji.1_Missense_Mutation_p.V104L|ADAM22_uc003ujj.1_Missense_Mutation_p.V105L|ADAM22_uc003ujk.1_Missense_Mutation_p.V105L|ADAM22_uc003ujl.1_Missense_Mutation_p.V105L|ADAM22_uc003ujm.2_Missense_Mutation_p.V105L|ADAM22_uc003ujo.2_Missense_Mutation_p.V105L|ADAM22_uc003ujp.1_Missense_Mutation_p.V157L	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	105					cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TCTCGATGTCGTGCTAAATCA	0.333			NA											13	70					6.72482e-11	8.95081e-11	0.003163	1	0
SAMD9L	219285	broad.mit.edu	37	7	92762765	92762765	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:92762765C>T	uc003umh.1	-	5	3736	c.2520G>A	c.(2518-2520)ATG>ATA	p.M840I	SAMD9L_uc003umj.1_Missense_Mutation_p.M840I|SAMD9L_uc003umi.1_Missense_Mutation_p.M840I|SAMD9L_uc010lfb.1_Missense_Mutation_p.M840I|SAMD9L_uc003umk.1_Missense_Mutation_p.M840I|SAMD9L_uc010lfc.1_Missense_Mutation_p.M840I|SAMD9L_uc010lfd.1_Missense_Mutation_p.M840I|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	840										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TCCGGGATCTCATGCAGTTTA	0.363			NA											11	121					0	0	0.001368	0	0
CALCR	799	broad.mit.edu	37	7	93072950	93072950	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:93072950C>A	uc003umv.1	-	10	1131	c.870G>T	c.(868-870)AAG>AAT	p.K290N	CALCR_uc011kia.1_Missense_Mutation_p.K70N|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.K256N|CALCR_uc003umw.2_Missense_Mutation_p.K256N	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	272	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	GCAAGCGTTGCTTCTCAGTAA	0.433			NA											6	92					3.59834e-05	4.37759e-05	0.001168	1	0
CASD1	64921	broad.mit.edu	37	7	94157528	94157528	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:94157528G>T	uc003uni.3	+	5	652	c.425G>T	c.(424-426)GGT>GTT	p.G142V	CASD1_uc003unh.2_Missense_Mutation_p.G142V|CASD1_uc003unj.3_Missense_Mutation_p.G142V	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	142						integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			GAAGTTAATGGTTCTATGAAA	0.284			NA											7	56					0.00307968	0.0035758	0.00308	1	0
ASNS	440	broad.mit.edu	37	7	97481672	97481672	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:97481672G>A	uc003uot.3	-	13	2091	c.1585C>T	c.(1585-1587)CGG>TGG	p.R529W	ASNS_uc011kin.1_Missense_Mutation_p.R446W|ASNS_uc003uou.3_Missense_Mutation_p.R529W|ASNS_uc003uov.3_Missense_Mutation_p.R529W|ASNS_uc011kio.1_Missense_Mutation_p.R508W|ASNS_uc003uow.3_Missense_Mutation_p.R508W|ASNS_uc003uox.3_Missense_Mutation_p.R446W	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	529	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CAGTCAGCCCGGCCTGGGTAA	0.498	Melanoma(70;6 1280 3108 3799 51123)|GBM(6;275 291 425 9929 27738)		NA											6	127					0	0	0.001168	0	0
ASNS	440	broad.mit.edu	37	7	97483918	97483918	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:97483918G>A	uc003uot.3	-	10	1718	c.1212C>T	c.(1210-1212)CGC>CGT	p.R404R	ASNS_uc011kin.1_Silent_p.R321R|ASNS_uc003uou.3_Silent_p.R404R|ASNS_uc003uov.3_Silent_p.R404R|ASNS_uc011kio.1_Silent_p.R383R|ASNS_uc003uow.3_Silent_p.R383R|ASNS_uc003uox.3_Silent_p.R321R	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	404	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TTCGATCTGCGCGGAGAACAT	0.348	Melanoma(70;6 1280 3108 3799 51123)|GBM(6;275 291 425 9929 27738)		NA											9	66					0	0	0.008291	0	0
SERPINE1	5054	broad.mit.edu	37	7	100771931	100771931	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:100771931G>C	uc003uxt.2	+	2	405	c.257G>C	c.(256-258)GGA>GCA	p.G86A	SERPINE1_uc011kkj.1_Missense_Mutation_p.G71A|SERPINE1_uc003uxu.1_5'Flank	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	86					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	GCAGCTATGGGATTCAAGATT	0.572			NA											6	72					0	0	0.00308	0	0
RELN	5649	broad.mit.edu	37	7	103191710	103191710	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:103191710C>T	uc003vca.2	-	41	6266	c.6106G>A	c.(6106-6108)GCG>ACG	p.A2036T	RELN_uc010liz.2_Missense_Mutation_p.A2036T	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2036					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACTGGATCCGCGGATGAGCTA	0.498	NSCLC(146;835 1944 15585 22231 52158)		NA											6	29					0	0	0.001168	0	0
MLL5	55904	broad.mit.edu	37	7	104681417	104681417	+	Silent	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:104681417A>T	uc003vcm.2	+	3	552	c.18A>T	c.(16-18)CCA>CCT	p.P6P	MLL5_uc010lja.1_5'UTR|MLL5_uc010ljb.1_Silent_p.P6P|MLL5_uc003vcl.2_Silent_p.P6P|MLL5_uc010ljc.2_Silent_p.P6P	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	6					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						TAGTGATCCCATTGGGGGTTG	0.423			NA											4	97					0	0	0.000602	0	0
CBLL1	79872	broad.mit.edu	37	7	107398785	107398785	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:107398785C>T	uc003veq.2	+	6	968	c.638C>T	c.(637-639)CCA>CTA	p.P213L	CBLL1_uc011kme.1_Missense_Mutation_p.P92L|CBLL1_uc011kmf.1_Missense_Mutation_p.P212L	NM_024814	NP_079090	Q75N03	HAKAI_HUMAN	Cas-Br-M (murine) ecotropic retroviral	213	Pro-rich.				cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|skin(2)|lung(1)	5						GCCCCACCACCAACTGAAATC	0.473			NA											14	206					0	0	0.004007	0	0
WNT16	51384	broad.mit.edu	37	7	120979309	120979309	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:120979309C>A	uc003vjw.2	+	4	1265	c.1008C>A	c.(1006-1008)CAC>CAA	p.H336Q	WNT16_uc003vjv.2_Missense_Mutation_p.H326Q|WNT16_uc010lkl.2_Missense_Mutation_p.H120Q	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,	336					anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					TGGTCAGGCACGTGGAGAGGT	0.537			NA											15	59					1.5739e-10	2.08038e-10	0.004007	1	0
GRM8	2918	broad.mit.edu	37	7	126746621	126746621	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:126746621G>A	uc003vlr.2	-	2	967	c.656C>T	c.(655-657)TCG>TTG	p.S219L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.S219L|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_5'UTR	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	219	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane		p.S219S(1)		lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGCCAGTGTCGAAACATAATT	0.493			NA								HNSCC(24;0.065)			6	54					0	0	0.001984	0	0
RBM28	55131	broad.mit.edu	37	7	127964664	127964664	+	Silent	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:127964664C>A	uc003vmp.2	-	12	1402	c.1287G>T	c.(1285-1287)ACG>ACT	p.T429T	RBM28_uc003vmo.2_Silent_p.T46T|RBM28_uc011koj.1_Silent_p.T288T|RBM28_uc011kok.1_Silent_p.T376T	NM_018077	NP_060547	Q9NW13	RBM28_HUMAN	RNA binding motif protein 28	429					mRNA processing|RNA splicing	Golgi apparatus|nucleolus|spliceosomal complex	nucleotide binding|RNA binding			ovary(2)	2						TCTTCACCTTCGTCGTCTGAA	0.562			NA											22	254					1.85244e-09	2.41513e-09	0.00333	1	0
TNPO3	23534	broad.mit.edu	37	7	128633922	128633922	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:128633922C>G	uc003vol.1	-	9	1579	c.1205G>C	c.(1204-1206)AGG>ACG	p.R402T	TNPO3_uc003vom.1_Missense_Mutation_p.R336T|TNPO3_uc010lly.1_Missense_Mutation_p.R402T|TNPO3_uc010llz.1_Missense_Mutation_p.R402T	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	402					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						GTCTGATACCCTCATGCGAAA	0.418	Pancreas(147;583 2585 39696 52331)		NA											3	92					0	0	0.000602	0	0
PLXNA4	91584	broad.mit.edu	37	7	131878879	131878879	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:131878879C>T	uc003vra.3	-	14	3027	c.2798G>A	c.(2797-2799)TGC>TAC	p.C933Y		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	933	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CACAGCCACGCAGATCTCCAC	0.582			NA											11	135					0	0	0.001855	0	0
AKR1D1	6718	broad.mit.edu	37	7	137792186	137792186	+	Missense_Mutation	SNP	T	T	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:137792186T>G	uc003vtz.2	+	7	784	c.715T>G	c.(715-717)TTA>GTA	p.L239V	AKR1D1_uc011kqe.1_Missense_Mutation_p.L239V|AKR1D1_uc011kqf.1_Missense_Mutation_p.L198V|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	239					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TCCACCTTTGTTAAAGGATGC	0.383			NA											7	109					0	0	0.006214	0	0
SSPO	23145	broad.mit.edu	37	7	149521590	149521590	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr7:149521590C>T	uc010lpk.2	+	96	13669	c.13669C>T	c.(13669-13671)CGA>TGA	p.R4557*	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4557					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCACTGGCTCCGAGACCCAAC	0.706			NA											3	46					0	0	0.004672	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497614	1497614	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:1497614A>G	uc003wpl.2	+	2	852	c.755A>G	c.(754-756)CAG>CGG	p.Q252R	DLGAP2_uc003wpm.2_Missense_Mutation_p.Q252R	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	331					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GACGCGCTGCAGAGCCCCTTC	0.667			NA											16	88					0	0	0.007413	0	0
LPL	4023	broad.mit.edu	37	8	19805713	19805713	+	Silent	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:19805713C>A	uc003wzk.3	+	2	481	c.111C>A	c.(109-111)ATC>ATA	p.I37I		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	37					fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	TTATCGACATCGAAAGTAAAT	0.423			NA											7	131					5.4927e-09	7.11259e-09	0.004482	1	0
EGR3	1960	broad.mit.edu	37	8	22548112	22548112	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:22548112G>C	uc003xcm.1	-	2	1396	c.1038C>G	c.(1036-1038)GAC>GAG	p.D346E	EGR3_uc011kzn.1_Missense_Mutation_p.D308E|EGR3_uc011kzo.1_Missense_Mutation_p.D292E	NM_004430	NP_004421	Q06889	EGR3_HUMAN	early growth response 3	346	C2H2-type 3.				circadian rhythm|muscle organ development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)		Colorectal(74;0.0145)|BRCA - Breast invasive adenocarcinoma(99;0.053)|COAD - Colon adenocarcinoma(73;0.0608)		GCTTGCGCTCGTCGCTGCGCG	0.652			NA											10	48					0	0	0.001855	0	0
DUSP26	78986	broad.mit.edu	37	8	33451115	33451115	+	Silent	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:33451115A>G	uc003xjp.2	-	3	705	c.372T>C	c.(370-372)TTT>TTC	p.F124F	DUSP26_uc003xjq.2_Silent_p.F124F	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	124	Tyrosine-protein phosphatase.					Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		TGCTCATGTCAAAGGCTGGCG	0.642			NA											7	71					0	0	0.008291	0	0
CHRNA6	8973	broad.mit.edu	37	8	42612091	42612091	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:42612091G>A	uc003xpj.2	-	4	400	c.354C>T	c.(352-354)CCC>CCT	p.P118P	CHRNA6_uc011lcw.1_Silent_p.P103P	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	118	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GAACAATGTCGGGCTTCCAAA	0.423			NA											5	99					0	0	0.001168	0	0
IL7	3574	broad.mit.edu	37	8	79652271	79652271	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:79652271T>A	uc003ybg.2	-	3	795	c.194A>T	c.(193-195)AAC>ATC	p.N65I	IL7_uc003ybe.2_Missense_Mutation_p.N24I|IL7_uc011lfm.1_RNA|IL7_uc003ybh.2_RNA|IL7_uc003ybi.3_RNA	NM_000880	NP_000871	P13232	IL7_HUMAN	interleukin 7 precursor	65					bone resorption|cell-cell signaling|humoral immune response|organ morphogenesis|positive regulation of B cell proliferation|positive regulation of T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-7 receptor binding				0						TTTAAAAAAGTTAAATTCATT	0.269			NA											4	40					0	0	0.001168	0	0
SNX16	64089	broad.mit.edu	37	8	82736126	82736126	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:82736126C>G	uc011lft.1	-	5	1019	c.512G>C	c.(511-513)TGG>TCG	p.W171S	SNX16_uc003ycn.2_Missense_Mutation_p.W171S|SNX16_uc003yco.2_Missense_Mutation_p.W142S	NM_022133	NP_071416	P57768	SNX16_HUMAN	sorting nexin 16 isoform a	171	PX.				cell communication|early endosome to late endosome transport|endosome to lysosome transport|protein targeting to lysosome	early endosome membrane|extrinsic to endosome membrane|late endosome membrane|lysosome	identical protein binding|phosphatidylinositol binding			ovary(1)|pancreas(1)	2						ATCTTTAAACCAGCGTTTTGG	0.343			NA											4	39					0	0	0.000602	0	0
POP1	10940	broad.mit.edu	37	8	99168473	99168473	+	Silent	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:99168473A>G	uc003yij.3	+	15	2353	c.2253A>G	c.(2251-2253)AAA>AAG	p.K751K	POP1_uc011lgv.1_Silent_p.K751K|POP1_uc003yik.2_Silent_p.K751K	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	751					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TGCCTAAAAAAACTCATCAGC	0.512			NA											17	74					0	0	0.007413	0	0
RSPO2	340419	broad.mit.edu	37	8	109001377	109001377	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:109001377G>A	uc003yms.2	-	3	848	c.190C>T	c.(190-192)CGA>TGA	p.R64*	RSPO2_uc003ymq.2_5'UTR|RSPO2_uc003ymr.2_Intron	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	64					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CCTTCTCTTCGAAGGAAGAAG	0.478			NA											5	72					0	0	0.000602	0	0
MYC	4609	broad.mit.edu	37	8	128752935	128752935	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:128752935G>C	uc003ysi.2	+	3	1621	c.1096G>C	c.(1096-1098)GAG>CAG	p.E366Q		NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	351					branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		CTCGGACACCGAGGAGAATGT	0.552			3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL								4	91					0	0	0.001168	0	0
ZFAT	57623	broad.mit.edu	37	8	135615100	135615101	+	Missense_Mutation	DNP	CC	CC	AG			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:135615100_135615101CC>AG	uc003yup.2	-	6	1036_1037	c.861_862GG>CT	c.(859-864)CAGGCC>CACTCC	p.287_288QA>HS	ZFAT_uc003yun.2_Missense_Mutation_p.275_276QA>HS|ZFAT_uc003yuo.2_Missense_Mutation_p.275_276QA>HS|ZFAT_uc010meh.2_Missense_Mutation_p.275_276QA>HS|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.275_276QA>HS|ZFAT_uc010mej.2_Missense_Mutation_p.225_226QA>HS|ZFAT_uc003yur.2_Missense_Mutation_p.275_276QA>HS	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	287_288	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CTCAGGTGGGCCTGCAGCGAGT	0.51			NA											7	70					0	0	0.004672	0	0
PGM5	5239	broad.mit.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:70993145A>G	uc004agr.2	+	2	521	c.292A>G	c.(292-294)ATC>GTC	p.I98V		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	98					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						ACAGAATGGCATCTTGTCGAC	0.478			NA											3	68					0	0	0.000248	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71503923	71503923	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:71503923A>G	uc004agu.2	+	7	650	c.345A>G	c.(343-345)ATA>ATG	p.I115M	PIP5K1B_uc011lrq.1_Missense_Mutation_p.I115M|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	115	PIPK.					endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		AACCTCTAATAGAACTGTCTA	0.383			NA											5	137					0	0	0.000602	0	0
FLJ46321	389763	broad.mit.edu	37	9	84605739	84605740	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:84605739_84605740CC>AA	uc004amn.2	+	4	401_402	c.354_355CC>AA	c.(352-357)AACCAC>AAAAAC	p.118_119NH>KN		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	118_119						integral to membrane					0						ATGATACCAACCACTTTCGTCG	0.54			NA											3	16					0	0	0.004672	0	0
FLJ46321	389763	broad.mit.edu	37	9	84605839	84605839	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:84605839G>A	uc004amn.2	+	4	501	c.454G>A	c.(454-456)GCT>ACT	p.A152T		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	152						integral to membrane					0						CCTGAAAGATGCTGCTCCCTC	0.552			NA											5	48					0	0	0.001168	0	0
NTRK2	4915	broad.mit.edu	37	9	87549173	87549173	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:87549173G>C	uc004aoa.1	+	16	2620	c.1682G>C	c.(1681-1683)TGT>TCT	p.C561S	NTRK2_uc004any.1_Missense_Mutation_p.C561S|NTRK2_uc004anz.1_Missense_Mutation_p.C577S	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	561	Protein kinase.|Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TATAACCTCTGTCCTGAGCAG	0.433			NA								TSP Lung(25;0.17)			4	50					0	0	0.000602	0	0
HSD17B3	3293	broad.mit.edu	37	9	99015147	99015147	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:99015147G>C	uc004awa.1	-	4	371	c.323C>G	c.(322-324)ACA>AGA	p.T108R	HSD17B3_uc010msc.1_Missense_Mutation_p.T108R	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	108					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	GTCATCTTTTGTAAAATCTGC	0.393			NA											6	161					0	0	0.001984	0	0
TBC1D2	55357	broad.mit.edu	37	9	100995710	100995710	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:100995710C>A	uc011lvb.1	-	4	949	c.769G>T	c.(769-771)GCC>TCC	p.A257S	TBC1D2_uc004ayq.2_Missense_Mutation_p.A257S|TBC1D2_uc004ayr.2_Missense_Mutation_p.A39S|TBC1D2_uc004ayo.3_Missense_Mutation_p.A257S	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	257						cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GGGGTGCTGGCGTCAGAGGCC	0.627			NA											3	31					0.004672	0.00534343	0.004672	1	0
ASTN2	23245	broad.mit.edu	37	9	119977009	119977009	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:119977009C>T	uc004bjs.1	-	3	744	c.643G>A	c.(643-645)GCG>ACG	p.A215T	ASTN2_uc004bjr.1_Missense_Mutation_p.A215T|ASTN2_uc004bjt.1_Missense_Mutation_p.A215T	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	215	Helical; (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AGCAGCAGCGCGATGAGGCCA	0.612			NA											10	31					0	0	0.001368	0	0
LMX1B	4010	broad.mit.edu	37	9	129458702	129458702	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:129458702C>T	uc004bqj.2	+	8	1162	c.1112C>T	c.(1111-1113)TCC>TTC	p.S371F	LMX1B_uc004bqi.2_Missense_Mutation_p.S364F|LMX1B_uc011maa.1_Missense_Mutation_p.S375F	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	371					dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CGGCTCTACTCCATGCAGAGT	0.682	Pancreas(110;1796 2278 18357 20466)		NA							Nail-Patella_Syndrome				10	135					0	0	0.00245	0	0
NDOR1	27158	broad.mit.edu	37	9	140110130	140110130	+	Silent	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr9:140110130C>G	uc004clw.2	+	11	1419	c.1308C>G	c.(1306-1308)CTC>CTG	p.L436L	NDOR1_uc004clx.2_Silent_p.L436L|NDOR1_uc011mes.1_Silent_p.L429L|NDOR1_uc004cly.2_Silent_p.L402L	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	436	FAD-binding FR-type.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GGGTGCCCCTCTGGGTGCGGC	0.622			NA											3	61					0	0	0.004672	0	0
NLGN4X	57502	broad.mit.edu	37	X	5810994	5810994	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:5810994G>T	uc010ndh.2	-	6	2816	c.2315C>A	c.(2314-2316)CCA>CAA	p.P772Q	NLGN4X_uc004crp.2_Missense_Mutation_p.P792Q|NLGN4X_uc004crq.2_Missense_Mutation_p.P772Q|NLGN4X_uc010ndi.2_Missense_Mutation_p.P809Q|NLGN4X_uc004crr.2_Missense_Mutation_p.P772Q|NLGN4X_uc010ndj.2_Missense_Mutation_p.P772Q	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	772	Cytoplasmic (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CGTCATAAGTGGGATGTCATC	0.552			NA											14	140					6.31663e-08	8.04317e-08	0.003163	1	0
BMX	660	broad.mit.edu	37	X	15574209	15574209	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:15574209G>A	uc004cww.2	+	19	2155	c.1967G>A	c.(1966-1968)CGT>CAT	p.R656H	BMX_uc004cwx.3_Missense_Mutation_p.R656H|BMX_uc004cwy.3_Missense_Mutation_p.R656H	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	656	Protein kinase.				cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					CCAGAAAAGCGTCCCACATTT	0.333			NA											7	218					0	0	0.004482	0	0
CA5B	11238	broad.mit.edu	37	X	15768256	15768256	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:15768256A>T	uc004cxe.2	+	2	227	c.110A>T	c.(109-111)TAT>TTT	p.Y37F		NM_007220	NP_009151	Q9Y2D0	CAH5B_HUMAN	carbonic anhydrase VB, mitochondrial precursor	37					one-carbon metabolic process	mitochondrion	carbonate dehydratase activity|zinc ion binding				0	Hepatocellular(33;0.183)					TGCAGCCTCTATACTTGTACT	0.413			NA											26	142					0	0	0.002096	0	0
PHKA2	5256	broad.mit.edu	37	X	18944628	18944628	+	Missense_Mutation	SNP	T	T	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:18944628T>G	uc004cyv.3	-	14	1832	c.1402A>C	c.(1402-1404)ATT>CTT	p.I468L	PHKA2_uc010nfg.1_RNA	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	468					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					ATTGGATGAATGTCCGCGATA	0.463			NA											9	171					0	0	0.008291	0	0
PDHA1	5160	broad.mit.edu	37	X	19369444	19369444	+	Missense_Mutation	SNP	C	C	A	rs11554111		TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:19369444C>A	uc004czg.3	+	4	482	c.337C>A	c.(337-339)CAT>AAT	p.H113N	PDHA1_uc004czh.3_Missense_Mutation_p.H148N|PDHA1_uc011mjc.1_Missense_Mutation_p.H117N|PDHA1_uc011mjd.1_Missense_Mutation_p.H110N|PDHA1_uc010nfk.2_Missense_Mutation_p.H110N	NM_000284	NP_000275	P08559	ODPA_HUMAN	pyruvate dehydrogenase E1 alpha 1 precursor	113			H -> D (in PDHE1 deficiency).		glycolysis|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	protein binding|pyruvate dehydrogenase (acetyl-transferring) activity			ovary(1)	1	Hepatocellular(33;0.183)				NADH(DB00157)	CCCCACAGACCATCTCATCAC	0.498			NA											18	142					8.34094e-07	1.04125e-06	0.008871	1	0
FAM47C	442444	broad.mit.edu	37	X	37028863	37028863	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:37028863C>G	uc004ddl.1	+	1	2394	c.2380C>G	c.(2380-2382)CGT>GGT	p.R794G		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	794										ovary(3)	3						TCCCAAGACTCGTCGAGTGTC	0.617			NA											3	43					0	0	0.001168	0	0
EFHC2	80258	broad.mit.edu	37	X	44109460	44109460	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:44109460G>A	uc004dgb.3	-	6	928	c.838C>T	c.(838-840)CGG>TGG	p.R280W		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	280	DM10 2.						calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						TTACTCCTCCGGAGGAACATT	0.423			NA											5	37					0	0	0.001168	0	0
PAGE4	9506	broad.mit.edu	37	X	49597217	49597217	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:49597217C>G	uc004don.1	+	4	335	c.256C>G	c.(256-258)CCA>GCA	p.P86A		NM_007003	NP_008934	O60829	GAGC1_HUMAN	G antigen, family C, 1	86											0	Ovarian(276;0.236)					AGAGAAGACTCCACCTAATCC	0.383			NA											7	61					0	0	0.004482	0	0
CCNB3	85417	broad.mit.edu	37	X	50053715	50053715	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:50053715G>A	uc004dox.3	+	6	2844	c.2546G>A	c.(2545-2547)AGT>AAT	p.S849N	CCNB3_uc004doy.2_Missense_Mutation_p.S849N|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	849					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AAGGAGCCCAGTGTTGACACA	0.532			NA											4	20					0	0	0.000248	0	0
SMC1A	8243	broad.mit.edu	37	X	53432207	53432207	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:53432207C>G	uc004dsg.2	-	12	2097	c.2028G>C	c.(2026-2028)GAG>GAC	p.E676D	SMC1A_uc011moe.1_Missense_Mutation_p.E654D|SMC1A_uc011mof.1_Missense_Mutation_p.E442D	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	676	Potential.				cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						GCTCCTTCTTCTCTTTCAACT	0.537			NA											9	35					0	0	0.008291	0	0
TSR2	90121	broad.mit.edu	37	X	54469901	54469901	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:54469901G>T	uc004dte.2	+	3	243	c.241G>T	c.(241-243)GTG>TTG	p.V81L	TSR2_uc004dtf.2_5'UTR	NM_058163	NP_477511	Q969E8	TSR2_HUMAN	TSR2, 20S rRNA accumulation, homolog	81					rRNA processing		protein binding				0						TGATACAGTTGTGGAAGACGG	0.522			NA											9	73					1.33987e-11	1.80222e-11	0.008291	1	0
SPIN2B	474343	broad.mit.edu	37	X	57146385	57146385	+	Silent	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:57146385G>C	uc004duy.2	-	2	937	c.678C>G	c.(676-678)GGC>GGG	p.G226G	SPIN2B_uc004duz.2_Silent_p.G226G|SPIN2B_uc004dva.2_Silent_p.G226G|uc011mor.1_RNA	NM_001006682	NP_001006683	Q9BPZ2	SPI2B_HUMAN	spindlin-like protein 2	226					apoptosis|cell cycle|gamete generation	nucleus					0						GAATGACCATGCCGATCCTTT	0.438			NA											15	117					0	0	0.006122	0	0
HEPH	9843	broad.mit.edu	37	X	65475992	65475992	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:65475992G>T	uc011moz.1	+	17	2785	c.2725G>T	c.(2725-2727)GGC>TGC	p.G909C	HEPH_uc004dwn.2_Missense_Mutation_p.G909C|HEPH_uc004dwo.2_Missense_Mutation_p.G639C|HEPH_uc010nkr.2_Missense_Mutation_p.G717C|HEPH_uc011mpa.1_Missense_Mutation_p.G909C|HEPH_uc010nks.2_Missense_Mutation_p.G198C	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	906	Extracellular (Potential).				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity	p.E909V(1)		lung(5)|ovary(4)	9						CTGCCAAAAGGGCATCCTGGA	0.483			NA											6	86					0.00448238	0.00517302	0.004482	1	0
GDPD2	54857	broad.mit.edu	37	X	69649556	69649556	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:69649556C>T	uc004dyh.2	+	11	1401	c.1150C>T	c.(1150-1152)CAA>TAA	p.Q384*	GDPD2_uc010nkx.1_3'UTR|GDPD2_uc010nky.1_Nonsense_Mutation_p.Q170*|GDPD2_uc011mpk.1_Nonsense_Mutation_p.Q384*|GDPD2_uc011mpl.1_Nonsense_Mutation_p.Q305*|GDPD2_uc011mpm.1_Nonsense_Mutation_p.Q305*	NM_017711	NP_060181	Q9HCC8	GDPD2_HUMAN	osteoblast differentiation promoting factor	384	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	glycerophosphodiester phosphodiesterase activity|glycerophosphoinositol inositolphosphodiesterase activity|metal ion binding			ovary(2)	2	Renal(35;0.156)					AAGGGTGCCCCAAGCCATGGT	0.562			NA											3	23					0	0	0.004672	0	0
ATRX	546	broad.mit.edu	37	X	76939375	76939375	+	Nonsense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:76939375G>C	uc004ecp.3	-	9	1605	c.1373C>G	c.(1372-1374)TCA>TGA	p.S458*	ATRX_uc004ecq.3_Nonsense_Mutation_p.S420*|ATRX_uc004eco.3_Nonsense_Mutation_p.S243*|ATRX_uc004ecr.2_Nonsense_Mutation_p.S419*|ATRX_uc010nlx.1_Nonsense_Mutation_p.S458*|ATRX_uc010nly.1_Nonsense_Mutation_p.S403*	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	458					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTCTGACTTTGAAATATCCTT	0.353			NA	Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						11	171					0	0	0.008291	0	0
CYSLTR1	10800	broad.mit.edu	37	X	77528786	77528786	+	Nonsense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:77528786A>T	uc004edb.2	-	3	858	c.458T>A	c.(457-459)TTG>TAG	p.L153*	CYSLTR1_uc010nma.2_Nonsense_Mutation_p.L153*|CYSLTR1_uc010nmb.2_Nonsense_Mutation_p.L153*	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	153	Helical; Name=4; (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	AGAACTGGTCAAAATCACAAA	0.363			NA											3	26					0	0	0.000248	0	0
HDX	139324	broad.mit.edu	37	X	83723856	83723856	+	Missense_Mutation	SNP	T	T	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:83723856T>A	uc004eek.1	-	3	984	c.875A>T	c.(874-876)AAT>ATT	p.N292I	HDX_uc011mqv.1_Missense_Mutation_p.N292I|HDX_uc004eel.1_Missense_Mutation_p.N234I	NM_144657	NP_653258	Q7Z353	HDX_HUMAN	highly divergent homeobox	292						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)	2						GGACAAACAATTTCCTTCTGC	0.473	Pancreas(53;231 1169 36156 43751 51139)		NA											12	126					0	0	0.003163	0	0
GPRASP2	114928	broad.mit.edu	37	X	101971406	101971406	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:101971406G>A	uc004ejk.2	+	4	2943	c.1609G>A	c.(1609-1611)GGA>AGA	p.G537R	GPRASP2_uc004ejl.2_Missense_Mutation_p.G537R|GPRASP2_uc004ejm.2_Missense_Mutation_p.G537R|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	537						cytoplasm	protein binding			ovary(1)	1						TAGCCCAGAAGGAGAAGAGCA	0.507			NA											4	106					0	0	0.000602	0	0
CXorf57	55086	broad.mit.edu	37	X	105868456	105868456	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:105868456C>G	uc004emi.3	+	3	1074	c.923C>G	c.(922-924)CCA>CGA	p.P308R	CXorf57_uc004emj.3_Missense_Mutation_p.P308R|CXorf57_uc004emh.2_Missense_Mutation_p.P308R	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	308										ovary(1)|lung(1)|breast(1)	3						AAGAGTTATCCATTCAGAATA	0.383			NA											6	109					0	0	0.001984	0	0
AMMECR1	9949	broad.mit.edu	37	X	109561258	109561258	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:109561258G>A	uc004eoo.2	-	1	123	c.42C>T	c.(40-42)TCC>TCT	p.S14S	AMMECR1_uc004eop.2_Silent_p.S14S|AMMECR1_uc004eoq.2_Intron	NM_015365	NP_056180	Q9Y4X0	AMER1_HUMAN	AMMECR1 protein isoform 1	14											0						GGGGCGAACTGGACAGTTTCT	0.672			NA											5	34					0	0	0.00308	0	0
RGAG1	57529	broad.mit.edu	37	X	109694746	109694746	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:109694746G>T	uc004eor.1	+	3	1147	c.901G>T	c.(901-903)GAT>TAT	p.D301Y	RGAG1_uc011msr.1_Missense_Mutation_p.D301Y	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	301										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GCTCATGTCAGATCTAGACTC	0.478			NA											18	191					9.7654e-05	0.000117678	0.007413	1	0
DOCK11	139818	broad.mit.edu	37	X	117676931	117676931	+	Missense_Mutation	SNP	G	G	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:117676931G>C	uc004eqp.2	+	3	325	c.262G>C	c.(262-264)GTA>CTA	p.V88L		NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	88	Interaction with activated CDC42 (By similarity).				blood coagulation	cytosol	GTP binding			ovary(3)	3						GCAGTCTACTGTACCAGAAGA	0.378			NA											8	91					0	0	0.00308	0	0
KIAA1210	57481	broad.mit.edu	37	X	118220818	118220818	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:118220818T>C	uc004era.3	-	11	4375	c.4375A>G	c.(4375-4377)AAT>GAT	p.N1459D		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1459										ovary(4)|skin(1)	5						TGGTTATTATTACCATCACCA	0.443			NA											6	65					0	0	0.001168	0	0
GLUD2	2747	broad.mit.edu	37	X	120181571	120181571	+	Silent	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:120181571G>T	uc004eto.2	+	1	110	c.33G>T	c.(31-33)CCG>CCT	p.P11P		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	11					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	CGCTGCTGCCGTCCCGGGCCG	0.766			NA											18	58					1.10513e-12	1.49173e-12	0.002299	1	0
XIAP	331	broad.mit.edu	37	X	123040864	123040864	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:123040864C>G	uc010nqu.2	+	7	1453	c.1327C>G	c.(1327-1329)CGC>GGC	p.R443G	XIAP_uc004etx.2_Missense_Mutation_p.R443G|XIAP_uc010nqv.2_Missense_Mutation_p.R69G	NM_001167	NP_001158	P98170	XIAP_HUMAN	baculoviral IAP repeat-containing protein 4	443					anti-apoptosis|apoptosis|induction of apoptosis by intracellular signals|response to DNA damage stimulus	cytosol	caspase inhibitor activity|ligase activity|protein binding|zinc ion binding			ovary(1)|lung(1)	2						GCAGCTAAGGCGCCTGCAAGA	0.323			NA							X-linked_Lymphoproliferative_syndrome				6	81					0	0	0.00308	0	0
ODZ1	10178	broad.mit.edu	37	X	123587250	123587250	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:123587250G>A	uc004euj.2	-	22	4084	c.4020C>T	c.(4018-4020)ATC>ATT	p.I1340I	ODZ1_uc011muj.1_Silent_p.I1346I|ODZ1_uc010nqy.2_Silent_p.I1347I	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1340	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CATTTGAGCCGATTACAGTTG	0.423			NA											10	143					0	0	0.000978	0	0
ODZ1	10178	broad.mit.edu	37	X	123654532	123654532	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:123654532G>T	uc004euj.2	-	18	3200	c.3136C>A	c.(3136-3138)CAT>AAT	p.H1046N	ODZ1_uc011muj.1_Missense_Mutation_p.H1045N|ODZ1_uc010nqy.2_Missense_Mutation_p.H1046N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1046	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ATCGTTGAATGTGTCAGAAGG	0.498			NA											22	136					9.95505e-16	1.34852e-15	0.002299	1	0
ACTRT1	139741	broad.mit.edu	37	X	127185978	127185978	+	Missense_Mutation	SNP	A	A	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:127185978A>T	uc004eum.2	-	1	405	c.208T>A	c.(208-210)TTG>ATG	p.L70M		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	70						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						GGGTAGTGCAAATGTAGGGCC	0.478			NA											14	179					0	0	0.001855	0	0
SMARCA1	6594	broad.mit.edu	37	X	128582330	128582330	+	Silent	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:128582330G>T	uc004eun.3	-	24	3234	c.3121C>A	c.(3121-3123)CGG>AGG	p.R1041R	SMARCA1_uc004eup.3_Silent_p.R1029R|SMARCA1_uc011muk.1_Silent_p.R1041R|SMARCA1_uc011mul.1_Silent_p.R1029R	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	1041					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						TTAGTTGCCCGTTTCTTCTTT	0.318			NA											9	70					0.00448238	0.00517302	0.004482	1	0
SMARCA1	6594	broad.mit.edu	37	X	128599500	128599500	+	Silent	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:128599500G>T	uc004eun.3	-	23	3140	c.3027C>A	c.(3025-3027)GCC>GCA	p.A1009A	SMARCA1_uc004eup.3_Silent_p.A997A|SMARCA1_uc011muk.1_Silent_p.A1009A|SMARCA1_uc011mul.1_Silent_p.A997A	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	1009	SANT 2.				ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						TACATACCATGGCAGTCCTAG	0.279			NA											11	161					0.000151284	0.000181732	0.001855	1	0
SAGE1	55511	broad.mit.edu	37	X	134989508	134989508	+	Missense_Mutation	SNP	T	T	C			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:134989508T>C	uc004ezh.2	+	9	1081	c.914T>C	c.(913-915)ATG>ACG	p.M305T	SAGE1_uc010nry.1_Missense_Mutation_p.M274T|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	305										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GAAGAGAAGATGGAAAATGAC	0.433			NA											20	104					0	0	0.002299	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135764989	135764989	+	Silent	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:135764989C>G	uc004fab.2	-	13	1869	c.1407G>C	c.(1405-1407)CGG>CGC	p.R469R	ARHGEF6_uc011mwd.1_Silent_p.R342R|ARHGEF6_uc011mwe.1_Silent_p.R315R	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	469	PH.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					ACATAAGGTACCGCTCCTCTT	0.343			NA											6	88					0	0	0.001984	0	0
GPR101	83550	broad.mit.edu	37	X	136113001	136113001	+	Missense_Mutation	SNP	T	T	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:136113001T>G	uc011mwh.1	-	1	833	c.833A>C	c.(832-834)GAA>GCA	p.E278A		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	278	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					GTCCTTGGCTTCCATTCTGCC	0.592			NA											4	168					0	0	0.000248	0	0
MCF2	4168	broad.mit.edu	37	X	138714570	138714571	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:138714570_138714571GG>TT	uc004fau.2	-	2	388_389	c.94_95CC>AA	c.(94-96)CCT>AAT	p.P32N	MCF2_uc004fav.2_Missense_Mutation_p.P32N|MCF2_uc011mwl.1_Missense_Mutation_p.P32N|MCF2_uc010nsh.1_Missense_Mutation_p.P32N|MCF2_uc011mwm.1_Missense_Mutation_p.P32N|MCF2_uc011mwn.1_Missense_Mutation_p.P177N|MCF2_uc004faw.2_Missense_Mutation_p.P92N|MCF2_uc011mwo.1_Missense_Mutation_p.P92N	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	32	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					AAAGCTGGTAGGACGTAAAACC	0.356			NA											6	78					0	0	0.004672	0	0
SLITRK2	84631	broad.mit.edu	37	X	144904003	144904003	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:144904003G>T	uc004fcd.2	+	5	1050	c.60G>T	c.(58-60)GAG>GAT	p.E20D	SLITRK2_uc010nsp.2_Missense_Mutation_p.E20D|SLITRK2_uc010nso.2_Missense_Mutation_p.E20D|SLITRK2_uc011mwq.1_Missense_Mutation_p.E20D|SLITRK2_uc011mwr.1_Missense_Mutation_p.E20D|SLITRK2_uc011mws.1_Missense_Mutation_p.E20D|SLITRK2_uc004fcg.2_Missense_Mutation_p.E20D|SLITRK2_uc011mwt.1_Missense_Mutation_p.E20D	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	20						integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TACAGACAGAGAGTCGCAAAA	0.473			NA											7	46					0.00198382	0.00231749	0.001984	1	0
GABRQ	55879	broad.mit.edu	37	X	151821537	151821537	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:151821537G>A	uc004ffp.1	+	9	1712	c.1692G>A	c.(1690-1692)GAG>GAA	p.E564E		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	564						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ATGATGATGAGCTCATGGCCC	0.517			NA											10	57					0	0	0.008291	0	0
PDZD4	57595	broad.mit.edu	37	X	153069120	153069120	+	Silent	SNP	C	C	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:153069120C>T	uc004fiz.1	-	8	2248	c.1998G>A	c.(1996-1998)GCG>GCA	p.A666A	PDZD4_uc004fiy.1_Silent_p.A591A|PDZD4_uc004fix.2_Silent_p.A570A|PDZD4_uc004fja.1_Silent_p.A672A|PDZD4_uc011mze.1_Silent_p.A557A	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	666						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCTCGCTCACCGCGTCGTCGT	0.667			NA											5	101					0	0	0.001984	0	0
ARHGAP4	393	broad.mit.edu	37	X	153184609	153184609	+	Silent	SNP	G	G	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:153184609G>A	uc004fjk.1	-	6	852	c.810C>T	c.(808-810)GAC>GAT	p.D270D	ARHGAP4_uc011mzf.1_Silent_p.D247D|ARHGAP4_uc004fjl.1_Silent_p.D310D|ARHGAP4_uc010nup.1_RNA	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	270					apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AAGGACTCACGTCCATGAGGT	0.572			NA											4	114					0	0	0.001984	0	0
HCFC1	3054	broad.mit.edu	37	X	153236139	153236139	+	Silent	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:153236139G>T	uc004fjp.2	-	1	681	c.153C>A	c.(151-153)GGC>GGA	p.G51G	TMEM187_uc004fjq.2_5'Flank	NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	51	Kelch 1.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TTCCCTCGTTGCCGCCGCCAA	0.572			NA											10	36					2.27111e-07	2.86325e-07	0.001368	1	0
Unknown	0	broad.mit.edu	37	X	153626816	153626816	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:153626816G>T	uc010nuv.1	-	1	363	c.47C>A	c.(46-48)TCG>TAG	p.S16*	RPL10_uc004fkm.2_Intron|RPL10_uc004fko.2_Intron|RPL10_uc004fkn.1_5'UTR|RPL10_uc004fkp.1_5'Flank|RPL10_uc004fkq.1_5'Flank|RPL10_uc004fkr.1_5'Flank|SNORA70_uc010nux.1_5'Flank					Homo sapiens cDNA, FLJ97181.												NA						CTTCCGTTCCGACTCTCTCTT	0.567			NA											50	317					9.72345e-25	1.3361e-24	0.00361	1	0
F8	2157	broad.mit.edu	37	X	154157498	154157498	+	Missense_Mutation	SNP	C	C	G			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chrX:154157498C>G	uc004fmt.2	-	14	4738	c.4567G>C	c.(4567-4569)GAC>CAC	p.D1523H		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1523	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GGGAATAGGTCCTTCTGATAA	0.463			NA											8	133					0	0	0.000978	0	0
GNG12	55970	broad.mit.edu	37	1	68171150	68171151	+	Frame_Shift_Ins	INS	-	-	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:68171150_68171151insT	uc001dea.1	-	4	394_395	c.202_203insA	c.(202-204)ACTfs	p.T68fs		NM_018841	NP_061329	Q9UBI6	GBG12_HUMAN	G-protein gamma-12 subunit precursor	68					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0						GATGATGCAAGTTTTTTTATCC	0.436			NA											9	116	---	---	---	---	NA	NA	NA	NA	NA
SPTA1	6708	broad.mit.edu	37	1	158617388	158617389	+	Frame_Shift_Ins	INS	-	-	T			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr1:158617388_158617389insT	uc001fst.1	-	27	4035_4036	c.3836_3837insA	c.(3835-3837)AAGfs	p.K1279fs		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1279	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCTTACGATCCTTTGTACGCCC	0.55			NA											10	125	---	---	---	---	NA	NA	NA	NA	NA
SPRYD5	84767	broad.mit.edu	37	11	55658790	55658790	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr11:55658790delG	uc010rip.1	+	7	1133	c.1041delG	c.(1039-1041)ATGfs	p.M347fs	SPRYD5_uc010riq.1_Frame_Shift_Del_p.M204fs	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	347	B30.2/SPRY.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				AGGTTCATATGGGGGACTCTT	0.428			NA											13	71	---	---	---	---	NA	NA	NA	NA	NA
TAOK1	57551	broad.mit.edu	37	17	27829728	27829728	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:27829728delG	uc002hdz.1	+	13	1519	c.1325delG	c.(1324-1326)CGGfs	p.R442fs	TAOK1_uc010wbe.1_Frame_Shift_Del_p.R442fs|TAOK1_uc010wbf.1_Frame_Shift_Del_p.R442fs|TAOK1_uc002heb.1_Frame_Shift_Del_p.R268fs	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	442					mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			GCTACTATACGGACAGCATCA	0.388			NA											7	169	---	---	---	---	NA	NA	NA	NA	NA
NF1	4763	broad.mit.edu	37	17	29527502	29527503	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	AG	AG	-	-	AG	AG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr17:29527502_29527503delAG	uc002hgg.2	+	9	1284_1285	c.951_952delAG	c.(949-954)ACAGAAfs	p.T317fs	NF1_uc002hge.1_Frame_Shift_Del_p.T317fs|NF1_uc002hgf.1_Frame_Shift_Del_p.T317fs|NF1_uc002hgh.2_Frame_Shift_Del_p.T317fs|NF1_uc010csn.1_Frame_Shift_Del_p.T177fs	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	317_318					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GGCAGCTGACAGAAAGTGCTGC	0.396			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			7	100	---	---	---	---	NA	NA	NA	NA	NA
HAMP	57817	broad.mit.edu	37	19	35773520	35773522	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	CTC	CTC	-	-	CTC	CTC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr19:35773520_35773522delCTC	uc002nyw.2	+	1	111_113	c.40_42delCTC	c.(40-42)CTCdel	p.L18del		NM_021175	NP_066998	P81172	HEPC_HUMAN	hepcidin antimicrobial peptide preproprotein	18					defense response to bacterium|defense response to fungus|immune response|killing of cells of other organism	extracellular region	hormone activity			central_nervous_system(1)	1	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)		Epithelial(14;7.4e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.47e-19)|all cancers(14;4.17e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TTGCCTCCTGCTCCTCCTCCTCC	0.64			NA											10	223	---	---	---	---	NA	NA	NA	NA	NA
RGPD3	653489	broad.mit.edu	37	2	107049632	107049633	+	Frame_Shift_Ins	INS	-	-	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:107049632_107049633insA	uc010ywi.1	-	16	2371_2372	c.2314_2315insT	c.(2314-2316)GCGfs	p.A772fs		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	772					intracellular transport		binding			ovary(1)	1						TTCTGAATCCGCATTTCGCAAA	0.376			NA											9	146	---	---	---	---	NA	NA	NA	NA	NA
SCN2A	6326	broad.mit.edu	37	2	166245178	166245178	+	Frame_Shift_Del	DEL	C	C	-			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr2:166245178delC	uc002udc.2	+	27	5152	c.4862delC	c.(4861-4863)TCCfs	p.S1621fs	SCN2A_uc002udd.2_Frame_Shift_Del_p.S1621fs|SCN2A_uc002ude.2_Frame_Shift_Del_p.S1621fs	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1621	IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TATTTTGTGTCCCCTACCCTG	0.408			NA											14	173	---	---	---	---	NA	NA	NA	NA	NA
PREX2	80243	broad.mit.edu	37	8	69000005	69000006	+	Frame_Shift_Ins	INS	-	-	A			TCGA-55-7724-01A-11D-2167-08	TCGA-55-7724-10A-01D-2167-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7bf4a4b3-afb8-4494-b749-7138b223fc6f	b725ffd9-431b-4d0b-8752-5f2a7bb9e8b2	g.chr8:69000005_69000006insA	uc003xxv.1	+	19	2101_2102	c.2074_2075insA	c.(2074-2076)CGGfs	p.R692fs	PREX2_uc003xxu.1_Frame_Shift_Ins_p.R692fs|PREX2_uc011lez.1_Frame_Shift_Ins_p.R627fs	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	692	PDZ 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTTCCAGATCCGGGGATTTGGC	0.455			NA											20	256	---	---	---	---	NA	NA	NA	NA	NA
