Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PER3	8863	broad.mit.edu	37	1	7887411	7887411	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:7887411C>T	uc001aoo.2	+	17	2573	c.2398C>T	c.(2398-2400)CCA>TCA	p.P800S	PER3_uc009vmg.1_Missense_Mutation_p.P808S|PER3_uc009vmh.1_Missense_Mutation_p.P801S|PER3_uc001aop.2_Missense_Mutation_p.P808S|PER3_uc010nzw.1_Missense_Mutation_p.P489S	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	800	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		TTACCTCGTCCCAGCTTTTCC	0.697			NA											19	73					0	0	0.007413	0	0
UBE4B	10277	broad.mit.edu	37	1	10228257	10228257	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:10228257G>T	uc001aqs.3	+	24	3975	c.3262G>T	c.(3262-3264)GCC>TCC	p.A1088S	UBE4B_uc001aqr.3_Missense_Mutation_p.A959S|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.A543S|UBE4B_uc001aqu.2_5'Flank	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	1088					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		CTCTTACCTCGCCCTGGCCAC	0.582			NA											6	37					5.9392e-07	8.31245e-07	0.001168	1	0
PLOD1	5351	broad.mit.edu	37	1	12024297	12024297	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:12024297G>T	uc001atm.2	+	12	1359	c.1268G>T	c.(1267-1269)AGT>ATT	p.S423I	PLOD1_uc010obb.1_Missense_Mutation_p.S470I	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	423					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	GGGGCTCTCAGTGCAGATGGC	0.632			NA											37	159					4.01765e-15	7.31749e-15	0.009718	1	0
PADI3	51702	broad.mit.edu	37	1	17575706	17575706	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:17575706C>A	uc001bai.2	+	1	114	c.74C>A	c.(73-75)ACC>AAC	p.T25N		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	25					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GGCGTGGAGACCCTCGTGGAC	0.612			NA											13	47					9.31168e-06	1.22305e-05	0.001855	1	0
UBR4	23352	broad.mit.edu	37	1	19525396	19525396	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:19525396G>A	uc001bbi.2	-	4	409	c.405C>T	c.(403-405)GGC>GGT	p.G135G		NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	135					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CAGTGCACAGGCCCTTGATTA	0.338			NA											19	58					0	0	0.006122	0	0
DNAJC8	22826	broad.mit.edu	37	1	28559490	28559490	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:28559490C>A	uc001bpn.2	-	1	53	c.20G>T	c.(19-21)AGC>ATC	p.S7I	DNAJC8_uc001bpo.2_RNA	NM_014280	NP_055095	O75937	DNJC8_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 8	7					nuclear mRNA splicing, via spliceosome|protein folding	nucleoplasm	heat shock protein binding|unfolded protein binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.08e-05)|all_lung(284;4.29e-05)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.0105)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		OV - Ovarian serous cystadenocarcinoma(117;2.81e-22)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00275)|BRCA - Breast invasive adenocarcinoma(304;0.0059)|STAD - Stomach adenocarcinoma(196;0.00671)|READ - Rectum adenocarcinoma(331;0.0649)		TGAAGTCCCGCTCTCTCCTGA	0.632			NA											5	32					0.00116845	0.00134126	0.001168	1	0
THRAP3	9967	broad.mit.edu	37	1	36752298	36752298	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:36752298G>C	uc001cae.3	+	4	691	c.467G>C	c.(466-468)CGC>CCC	p.R156P	THRAP3_uc001caf.3_Missense_Mutation_p.R156P|THRAP3_uc001cag.1_Missense_Mutation_p.R156P	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	156	Arg-rich.|Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CGGTCAAGGCGCTCCTCATCC	0.527	Pancreas(129;785 1795 20938 23278 32581)		NA	T	USP6	aneurysmal bone cysts								60	240					0	0	0.00361	0	0
PTCH2	8643	broad.mit.edu	37	1	45294011	45294011	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:45294011G>A	uc010olf.1	-	13	1678	c.1666C>T	c.(1666-1668)CGG>TGG	p.R556W	PTCH2_uc010olg.1_Missense_Mutation_p.R254W	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	556	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CAGTGGCGCCGCCGTAGGTCC	0.657			NA							Basal_Cell_Nevus_syndrome				10	30					0	0	0.001368	0	0
DMBX1	127343	broad.mit.edu	37	1	46977793	46977793	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:46977793C>A	uc001cpx.2	+	4	791	c.776C>A	c.(775-777)TCC>TAC	p.S259Y	DMBX1_uc001cpw.2_Missense_Mutation_p.S254Y	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	259					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TATTCCTCGTCCCCGCTGAGC	0.637			NA											33	124					2.09667e-21	4.16286e-21	0.003755	1	0
KIAA0494	9813	broad.mit.edu	37	1	47183662	47183662	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:47183662C>A	uc001cqk.3	-	1	1075	c.98G>T	c.(97-99)CGC>CTC	p.R33L	KIAA0494_uc010omh.1_Missense_Mutation_p.R33L|KIAA0494_uc001cql.1_Missense_Mutation_p.R33L	NM_014774	NP_055589	O75071	K0494_HUMAN	hypothetical protein LOC9813	33							calcium ion binding				0	Acute lymphoblastic leukemia(166;0.155)					AGGCTCAGTGCGAAGCAGGCG	0.537			NA											7	34					8.12818e-05	9.89581e-05	0.001984	1	0
TAL1	6886	broad.mit.edu	37	1	47685528	47685528	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:47685528G>T	uc001cqx.2	-	4	1437	c.860C>A	c.(859-861)CCC>CAC	p.P287H	TAL1_uc009vyq.2_Missense_Mutation_p.P44T|TAL1_uc001cqy.2_Missense_Mutation_p.P287H	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	287					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						GCTGGAGTTGGGGGAAAGCAC	0.592			NA	T	TRD@|SIL	lymphoblastic leukemia/biphasic								5	32					1.23904e-05	1.59673e-05	0.000602	1	0
ELAVL4	1996	broad.mit.edu	37	1	50610738	50610738	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:50610738C>A	uc001csb.2	+	2	387	c.119C>A	c.(118-120)ACC>AAC	p.T40N	ELAVL4_uc001cry.3_Missense_Mutation_p.T43N|ELAVL4_uc001crz.3_Missense_Mutation_p.T40N|ELAVL4_uc001csa.3_Missense_Mutation_p.T57N|ELAVL4_uc001csc.3_Missense_Mutation_p.T40N|ELAVL4_uc009vyu.2_Missense_Mutation_p.T45N|ELAVL4_uc010omz.1_Missense_Mutation_p.T45N	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	40					mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						ACAGGGGCAACCACAGATGAC	0.473			NA											13	63					0.000219431	0.000259743	0.00245	1	0
ZCCHC11	23318	broad.mit.edu	37	1	52981709	52981709	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:52981709C>A	uc001ctx.2	-	3	970	c.736G>T	c.(736-738)GAA>TAA	p.E246*	ZCCHC11_uc001cty.2_Nonsense_Mutation_p.E246*|ZCCHC11_uc001ctz.2_Nonsense_Mutation_p.E246*|ZCCHC11_uc009vze.1_Nonsense_Mutation_p.E246*|ZCCHC11_uc009vzf.1_Nonsense_Mutation_p.E5*|ZCCHC11_uc001cub.2_Nonsense_Mutation_p.E246*|ZCCHC11_uc001cuc.2_RNA|ZCCHC11_uc001cud.2_Nonsense_Mutation_p.E246*	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	246					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						TTATTAGATTCATCATTCTTC	0.318			NA											9	35					0.00448238	0.00499424	0.004482	1	0
PODN	127435	broad.mit.edu	37	1	53544622	53544622	+	Silent	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:53544622G>C	uc001cuv.2	+	8	1591	c.1584G>C	c.(1582-1584)CTG>CTC	p.L528L	PODN_uc001cuw.2_Silent_p.L509L|PODN_uc010onr.1_Silent_p.L509L|PODN_uc010ons.1_Silent_p.L386L	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	480	LRR 16.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						TGCGTGAGCTGTACCTCACCA	0.662			NA											3	5					0	0	0.004672	0	0
TMEM48	55706	broad.mit.edu	37	1	54252918	54252918	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:54252918T>A	uc001cvs.2	-	16	1954	c.1713A>T	c.(1711-1713)TTA>TTT	p.L571F	TMEM48_uc010onu.1_Missense_Mutation_p.L531F|TMEM48_uc001cvt.2_Missense_Mutation_p.L448F|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_Missense_Mutation_p.L236F	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	571	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						ATGCTGCTACTAAGTGCGACA	0.264	Ovarian(178;223 2720 6667 9715)		NA											25	135					0	0	0.003954	0	0
YIPF1	54432	broad.mit.edu	37	1	54337113	54337113	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:54337113C>A	uc001cvu.2	-	7	750	c.413G>T	c.(412-414)GGG>GTG	p.G138V	YIPF1_uc001cvv.2_RNA|YIPF1_uc001cvw.2_RNA|YIPF1_uc001cvx.2_RNA|YIPF1_uc001cvy.2_RNA	NM_018982	NP_061855	Q9Y548	YIPF1_HUMAN	Yip1 domain family, member 1	138	Helical; (Potential).					integral to membrane|transport vesicle				large_intestine(1)|ovary(1)	2						GGAAAGATTCCCACTAATTGC	0.423			NA											27	86					9.39395e-14	1.66651e-13	0.00632	1	0
FAM151A	338094	broad.mit.edu	37	1	55077354	55077354	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:55077354G>T	uc001cxn.2	-	6	997	c.865C>A	c.(865-867)CGG>AGG	p.R289R	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	289						integral to membrane					0						GTGTTATCCCGGACGTAGAGC	0.577			NA											18	85					1.99824e-07	2.83741e-07	0.00499	1	0
C1orf175	374977	broad.mit.edu	37	1	55158101	55158101	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:55158101G>C	uc010ooe.1	+	16	3040	c.2716G>C	c.(2716-2718)GTG>CTG	p.V906L	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.V474L|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.V424L|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.V906L|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.V108L|C1orf175_uc001cxu.2_Missense_Mutation_p.V52L	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	906						integral to membrane	binding				0						TGGCAGCTGGGTGGTGAAAGT	0.597			NA											23	87					0	0	0.004656	0	0
SERBP1	26135	broad.mit.edu	37	1	67889914	67889914	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:67889914C>T	uc001ddv.2	-	5	927	c.787G>A	c.(787-789)GAA>AAA	p.E263K	SERBP1_uc001ddx.2_Missense_Mutation_p.E257K|SERBP1_uc001ddy.2_Missense_Mutation_p.E242K|SERBP1_uc001ddw.2_Missense_Mutation_p.E248K	NM_001018067	NP_001018077	Q8NC51	PAIRB_HUMAN	SERPINE1 mRNA binding protein 1 isoform 1	263					regulation of mRNA stability	nucleus|perinuclear region of cytoplasm	mRNA 3'-UTR binding|protein binding			skin(1)	1						GGATGATGTTCTTCACCTTCA	0.368			NA											19	102					0	0	0.00333	0	0
FPGT	8790	broad.mit.edu	37	1	74671407	74671407	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:74671407A>G	uc001dgb.1	+	4	1713	c.1676A>G	c.(1675-1677)TAT>TGT	p.Y559C	TNNI3K_uc001dgc.1_Intron|TNNI3K_uc001dgd.2_Intron|TNNI3K_uc001dge.1_Intron|FPGT_uc010oqt.1_Missense_Mutation_p.Y184C|FPGT_uc010oqu.1_Missense_Mutation_p.Y305C|FPGT_uc010oqv.1_Intron	NM_003838	NP_003829	O14772	FPGT_HUMAN	fucose-1-phosphate guanyltransferase	559					fucose metabolic process	cytoplasm	fucose-1-phosphate guanylyltransferase activity|GTP binding			skin(1)	1						CTGAATAGCTATAAGTTGCTG	0.338			NA											15	61					0	0	0.004007	0	0
TNNI3K	51086	broad.mit.edu	37	1	74834759	74834759	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:74834759C>A	uc001dgf.1	+	14	1426	c.1375C>A	c.(1375-1377)CAG>AAG	p.Q459K	TNNI3K_uc001dgc.1_Missense_Mutation_p.Q560K|TNNI3K_uc001dgd.2_Missense_Mutation_p.Q560K|TNNI3K_uc001dge.1_Missense_Mutation_p.Q560K	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	459						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TTTCCATCTTCAGCTCTCAGA	0.338			NA											15	33					1.3612e-06	1.86687e-06	0.003163	1	0
C1orf173	127254	broad.mit.edu	37	1	75038906	75038906	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:75038906C>A	uc001dgg.2	-	14	2707	c.2488G>T	c.(2488-2490)GAG>TAG	p.E830*		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	830	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GGAGGGATCTCCCTTTTTTCT	0.572			NA											23	78					7.87624e-14	1.40456e-13	0.00278	1	0
FAM73A	374986	broad.mit.edu	37	1	78324681	78324681	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:78324681C>T	uc001dhx.2	+	9	1087	c.1055C>T	c.(1054-1056)CCA>CTA	p.P352L	FAM73A_uc010ork.1_Missense_Mutation_p.P352L|FAM73A_uc010orl.1_Missense_Mutation_p.P314L|FAM73A_uc001dhy.1_Missense_Mutation_p.P141L	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	352						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		TGTCACTGCCCATTTTACGAG	0.388			NA											15	73					0	0	0.00245	0	0
IFI44	10561	broad.mit.edu	37	1	79120844	79120844	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:79120844G>T	uc001dip.3	+	4	764	c.640G>T	c.(640-642)GTA>TTA	p.V214L	IFI44_uc010orr.1_Missense_Mutation_p.V214L|IFI44_uc010ors.1_5'UTR	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	214					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						CCAAGGGCATGTAACGCATCA	0.463			NA											26	105					2.48779e-11	4.08453e-11	0.005443	1	0
LMO4	8543	broad.mit.edu	37	1	87805252	87805252	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:87805252C>A	uc001dmi.2	+	3	1050	c.270C>A	c.(268-270)TGC>TGA	p.C90*	LMO4_uc001dmj.2_Nonsense_Mutation_p.C90*	NM_006769	NP_006760	P61968	LMO4_HUMAN	LIM domain only 4	90	LIM zinc-binding 2.				neural tube closure|transcription from RNA polymerase II promoter	transcription factor complex	sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding				0		Lung NSC(277;0.179)		all cancers(265;0.00456)|Epithelial(280;0.0148)|BRCA - Breast invasive adenocarcinoma(282;0.153)		GCAGCGCTTGCGGACAGTCGA	0.388			NA											13	24					4.7546e-09	7.29752e-09	0.004007	1	0
RBMXL1	494115	broad.mit.edu	37	1	89448560	89448560	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:89448560C>G	uc009wcx.2	-	3	1666	c.950G>C	c.(949-951)CGT>CCT	p.R317P	CCBL2_uc001dmp.2_Intron|CCBL2_uc001dmq.2_Intron|CCBL2_uc001dmr.2_Intron|RBMXL1_uc001dms.2_Missense_Mutation_p.R317P	NM_001162536	NP_001156008	Q96E39	RBMXL_HUMAN	RNA binding motif protein, X-linked-like 1	317	Ser-rich.						nucleotide binding|RNA binding				0						ATATCCATCACGTGAGCTGCT	0.498			NA											58	235					0	0	0.00361	0	0
GBP4	115361	broad.mit.edu	37	1	89657124	89657124	+	Silent	SNP	G	G	T	rs141089744		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:89657124G>T	uc001dnb.2	-	6	852	c.736C>A	c.(736-738)CGG>AGG	p.R246R		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	246						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		AAGCACTTCCGTTTTCGGAAG	0.393			NA											18	74					1.67942e-08	2.51544e-08	0.006122	1	0
ABCA4	24	broad.mit.edu	37	1	94473843	94473843	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:94473843C>A	uc001dqh.2	-	42	5950	c.5846G>T	c.(5845-5847)GGC>GTC	p.G1949V	ABCA4_uc001dqi.1_Missense_Mutation_p.G68V	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1949	ABC transporter 2.|Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GCTGGAGGTGCCTGGATAAAT	0.542			NA											12	39					5.50884e-06	7.29174e-06	0.001368	1	0
DBT	1629	broad.mit.edu	37	1	100671808	100671808	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:100671808A>T	uc001dta.2	-	10	1292	c.1259T>A	c.(1258-1260)ATT>AAT	p.I420N	DBT_uc010oug.1_Missense_Mutation_p.I239N	NM_001918	NP_001909	P11182	ODB2_HUMAN	dihydrolipoamide branched chain transacylase	420					branched chain family amino acid catabolic process|fatty-acyl-CoA biosynthetic process	microtubule cytoskeleton|mitochondrial alpha-ketoglutarate dehydrogenase complex|mitochondrial nucleoid	acyltransferase activity|cofactor binding|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity|protein binding			pancreas(1)	1		all_epithelial(167;5.4e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0739)|all cancers(265;0.123)|COAD - Colon adenocarcinoma(174;0.154)|Lung(183;0.199)		AAGGGCCCCAATGGCTACTTC	0.333			NA											16	58					0	0	0.007413	0	0
NTNG1	22854	broad.mit.edu	37	1	107866972	107866972	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:107866972G>T	uc001dvh.3	+	3	1033	c.315G>T	c.(313-315)CTG>CTT	p.L105L	NTNG1_uc001dvf.3_Silent_p.L105L|NTNG1_uc010out.1_Silent_p.L105L|NTNG1_uc001dvc.3_Silent_p.L105L|NTNG1_uc001dvd.1_Silent_p.L105L	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	105	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		CCCCTGAGCTGATGTTTGATT	0.488			NA											50	194					4.01344e-20	7.89965e-20	0.00361	1	0
SLC6A17	388662	broad.mit.edu	37	1	110714731	110714731	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:110714731C>A	uc009wfq.2	+	3	797	c.336C>A	c.(334-336)CCC>CCA	p.P112P		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	112	Helical; Name=2; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		TCGGGATCCCCCTCTTCTTCC	0.627			NA											3	31					0.00024832	0.000291915	0.009096	1	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112997080	112997080	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:112997080G>T	uc001ebx.2	+	5	568	c.340G>T	c.(340-342)GAC>TAC	p.D114Y	CTTNBP2NL_uc001ebz.2_5'Flank	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	114	Potential.					actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGTGATCCTAGACCTTGAGGA	0.398			NA											7	54					0.00307968	0.00347099	0.00308	1	0
CASQ2	845	broad.mit.edu	37	1	116269693	116269693	+	Silent	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:116269693T>C	uc001efx.3	-	6	921	c.657A>G	c.(655-657)CCA>CCG	p.P219P	CASQ2_uc010owu.1_Silent_p.P148P	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	219					heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CATCCATAAATGGCTCATAGA	0.403			NA											6	37					0	0	0.001168	0	0
IGSF3	3321	broad.mit.edu	37	1	117158899	117158899	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:117158899A>G	uc001egr.1	-	3	929	c.224T>C	c.(223-225)ATG>ACG	p.M75T	IGSF3_uc001egq.1_Missense_Mutation_p.M75T	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	75	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		GGAAGAGTCCATGGTGCTGAC	0.542			NA											3	37					0	0	0.006214	0	0
ZNF697	90874	broad.mit.edu	37	1	120168693	120168693	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:120168693C>A	uc001ehy.1	-	2	145	c.31G>T	c.(31-33)GCA>TCA	p.A11S		NM_001080470	NP_001073939	Q5TEC3	ZN697_HUMAN	zinc finger protein 697	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0266)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0577)		TCCTGGTGTGCACAGACACCC	0.483			NA											36	150					4.00102e-26	8.30606e-26	0.00623	1	0
PDE4DIP	9659	broad.mit.edu	37	1	144882495	144882495	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:144882495C>A	uc001elw.3	-	24	3815	c.3524G>T	c.(3523-3525)AGA>ATA	p.R1175I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Intron|PDE4DIP_uc001elv.3_Missense_Mutation_p.R182I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1175					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GCTCTGGGGTCTGGGGAAAGG	0.512			NA	T	PDGFRB	MPD								10	94					1.58986e-06	2.1588e-06	0.008291	1	0
FLG	2312	broad.mit.edu	37	1	152277708	152277708	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:152277708G>C	uc001ezu.1	-	3	9690	c.9654C>G	c.(9652-9654)GAC>GAG	p.D3218E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3218	Filaggrin 19.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CACTGTCACTGTCCTGGCTCA	0.567			NA							Ichthyosis				60	246					0	0	0.00361	0	0
FLG	2312	broad.mit.edu	37	1	152284877	152284877	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:152284877A>G	uc001ezu.1	-	3	2521	c.2485T>C	c.(2485-2487)TCC>CCC	p.S829P	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	829	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGTGCCTGGAGTTGTCTCGT	0.577			NA							Ichthyosis				9	372					0	0	0.004482	0	0
FLG2	388698	broad.mit.edu	37	1	152325965	152325965	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:152325965G>T	uc001ezw.3	-	3	4370	c.4297C>A	c.(4297-4299)CAC>AAC	p.H1433N	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1433							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCCCTGAGTGCACTTCACTG	0.542			NA											71	341					2.26907e-38	4.8735e-38	0.00361	1	0
LCE3D	84648	broad.mit.edu	37	1	152552337	152552337	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:152552337G>T	uc001fab.2	-	2	133	c.76C>A	c.(76-78)CCA>ACA	p.P26T		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	26					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		CACTGTACTGGGCTCTTTGGG	0.632			NA											23	95					2.89027e-11	4.70013e-11	0.002299	1	0
FCRL5	83416	broad.mit.edu	37	1	157497526	157497526	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:157497526G>T	uc001fqu.2	-	9	1999	c.1841C>A	c.(1840-1842)TCT>TAT	p.S614Y	FCRL5_uc009wsm.2_Missense_Mutation_p.S614Y|FCRL5_uc010phv.1_Missense_Mutation_p.S614Y|FCRL5_uc010phw.1_Missense_Mutation_p.S529Y	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	614	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TTCTCCTCCAGAGGGGGCTGA	0.552			NA											30	103					1.08312e-15	2.01572e-15	0.009535	1	0
FCRL3	115352	broad.mit.edu	37	1	157665243	157665243	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:157665243G>T	uc001frb.2	-	8	1579	c.1287C>A	c.(1285-1287)GCC>GCA	p.A429A	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.A429A|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.A155A|FCRL3_uc001frc.1_Silent_p.A429A	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	429	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CTCCAGAGGGGGCTGAGCTGT	0.577			NA											28	134					3.73808e-20	7.37893e-20	0.005443	1	0
CD5L	922	broad.mit.edu	37	1	157809178	157809178	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:157809178G>T	uc001frk.3	-	2	194	c.51C>A	c.(49-51)TTC>TTA	p.F17L		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	17					apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TCTTACCTAGGAATCCAGGTC	0.443			NA											11	67					7.03913e-09	1.06838e-08	0.001368	1	0
OR10K2	391107	broad.mit.edu	37	1	158390349	158390349	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:158390349G>T	uc010pii.1	-	1	308	c.308C>A	c.(307-309)TCC>TAC	p.S103Y		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GAAGAGGAAGGAAAACATTTG	0.483			NA											32	125					1.45844e-13	2.5411e-13	0.002836	1	0
OR6N2	81442	broad.mit.edu	37	1	158746645	158746645	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:158746645G>T	uc010pir.1	-	1	781	c.781C>A	c.(781-783)CGG>AGG	p.R261R		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					TTCTTTAGCCGCACATACATG	0.433			NA											18	72					8.28177e-16	1.55397e-15	0.007413	1	0
CASQ1	844	broad.mit.edu	37	1	160162662	160162662	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:160162662T>A	uc010pja.1	+	2	607	c.350T>A	c.(349-351)GTG>GAG	p.V117E		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	117						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GATGCAGCTGTGGCCAAGAAA	0.552			NA									OREG0013927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	92					0	0	0.00333	0	0
F5	2153	broad.mit.edu	37	1	169524505	169524505	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:169524505G>A	uc001ggg.1	-	7	1178	c.1033C>T	c.(1033-1035)CGG>TGG	p.R345W	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	345					cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TTCATGTGCCGCCTCTGCTCA	0.448			NA											13	105					0	0	0.001855	0	0
BAT2L2	23215	broad.mit.edu	37	1	171510839	171510839	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:171510839G>T	uc010pmg.1	+	16	4494	c.4228G>T	c.(4228-4230)GAG>TAG	p.E1410*	BAT2L2_uc010pmh.1_Nonsense_Mutation_p.E387*	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	1410	Arg-rich.						protein C-terminus binding				0						TCCAAAATTTGAGCGAAAATT	0.493			NA											7	26					1.12685e-05	1.46598e-05	0.004482	1	0
ABL2	27	broad.mit.edu	37	1	179079530	179079530	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:179079530C>A	uc001gmj.3	-	11	1999	c.1712G>T	c.(1711-1713)CGG>CTG	p.R571L	ABL2_uc010pnf.1_Missense_Mutation_p.R571L|ABL2_uc010png.1_Missense_Mutation_p.R550L|ABL2_uc010pnh.1_Missense_Mutation_p.R550L|ABL2_uc001gmg.3_Missense_Mutation_p.R556L|ABL2_uc001gmi.3_Missense_Mutation_p.R556L|ABL2_uc001gmh.3_Missense_Mutation_p.R535L|ABL2_uc010pne.1_Missense_Mutation_p.R535L	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	571					axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TATAGGTAGCCGGGGCAGGTA	0.498			NA	T	ETV6	AML								31	96					5.77227e-19	1.12002e-18	0.008361	1	0
ACBD6	84320	broad.mit.edu	37	1	180257516	180257516	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:180257516G>A	uc001gog.2	-	8	1452	c.831C>T	c.(829-831)CAC>CAT	p.H277H		NM_032360	NP_115736	Q9BR61	ACBD6_HUMAN	acyl-coenzyme A binding domain containing 6	277						cytoplasm|nucleus	fatty-acyl-CoA binding			ovary(1)	1						TGCCAGTTGTGTGCCGCTGCA	0.473			NA											9	45					0	0	0.008291	0	0
IER5	51278	broad.mit.edu	37	1	181058374	181058374	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:181058374G>T	uc001got.3	+	1	737	c.336G>T	c.(334-336)CGG>CGT	p.R112R		NM_016545	NP_057629	Q5VY09	IER5_HUMAN	immediate early response 5	112										pancreas(1)	1						ACGCGCCGCGGGTAGGGGACG	0.587			NA											4	8					0.000157383	0.000188254	0.00308	1	0
RGS8	85397	broad.mit.edu	37	1	182615976	182615976	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:182615976G>T	uc010pnw.1	-	7	695	c.437C>A	c.(436-438)GCC>GAC	p.A146D	RGS8_uc001gpn.1_Missense_Mutation_p.A146D|RGS8_uc001gpm.1_Missense_Mutation_p.A164D	NM_001102450	NP_001095920	P57771	RGS8_HUMAN	regulator of G-protein signalling 8 isoform 2	146	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1						TTTTCCTTGGGCTTGGTCAAA	0.502	Ovarian(189;1262 3804 41973)		NA											32	135					1.06801e-11	1.77915e-11	0.009535	1	0
GLT25D2	23127	broad.mit.edu	37	1	183933123	183933123	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:183933123G>T	uc001gqr.2	-	6	1236	c.864C>A	c.(862-864)CAC>CAA	p.H288Q	GLT25D2_uc010poj.1_Missense_Mutation_p.H288Q|GLT25D2_uc001gqq.2_Missense_Mutation_p.H25Q|GLT25D2_uc001gqs.2_Missense_Mutation_p.H168Q	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	288					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						GGTAGCCATAGTGCTCTCTGT	0.512	Esophageal Squamous(10;42 606 18489 38825)		NA											9	38					3.09899e-07	4.38221e-07	0.004482	1	0
CFHR1	3078	broad.mit.edu	37	1	196801077	196801077	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:196801077G>T	uc001gtn.2	+	6	1055	c.941G>T	c.(940-942)CGA>CTA	p.R314L	CFHR1_uc001gtm.2_Missense_Mutation_p.R218L	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	314	Sushi 5.				complement activation	extracellular space					0						CACACATTGCGAACAACATGT	0.383			NA											17	57					8.24728e-16	1.55397e-15	0.004656	1	0
F13B	2165	broad.mit.edu	37	1	197032028	197032028	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:197032028G>A	uc001gtt.1	-	2	268	c.224C>T	c.(223-225)ACG>ATG	p.T75M		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	75	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TGTTGTACACGTGGTTTGCTC	0.373			NA											14	182					0	0	0.003163	0	0
KIF14	9928	broad.mit.edu	37	1	200559401	200559401	+	Splice_Site	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:200559401C>T	uc010ppk.1	-	17	3253	c.2814_splice	c.e17-1	p.Q938_splice	KIF14_uc010ppj.1_Splice_Site_p.Q447_splice	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14						microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TGCTTCAAGTCTACAATGTAG	0.338			NA											5	150					0	0	0.001168	0	0
PPFIA4	8497	broad.mit.edu	37	1	203025516	203025516	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:203025516G>T	uc001gyz.2	+	5	1195	c.602G>T	c.(601-603)CGG>CTG	p.R201L	PPFIA4_uc009xaj.2_Missense_Mutation_p.R832L|PPFIA4_uc010pqf.1_Missense_Mutation_p.R414L|PPFIA4_uc001gza.2_Missense_Mutation_p.R201L|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	201					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						CCAGTGTCTCGGGAAGAGAAC	0.592			NA											10	39					5.16669e-11	8.34243e-11	0.000978	1	0
PLEKHA6	22874	broad.mit.edu	37	1	204230557	204230557	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:204230557C>A	uc001hau.2	-	7	718	c.401G>T	c.(400-402)CGC>CTC	p.R134L		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	134	PH.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GAAGTAGGTGCGGACCCCGGC	0.637			NA											14	33					6.72482e-11	1.08072e-10	0.003163	1	0
CR2	1380	broad.mit.edu	37	1	207647210	207647210	+	Silent	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:207647210T>C	uc001hfw.2	+	11	2137	c.2043T>C	c.(2041-2043)GTT>GTC	p.V681V	CR2_uc001hfv.2_Silent_p.V740V|CR2_uc009xch.2_Silent_p.V681V	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	681	Sushi 11.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TGGAGCTAGTTAATACGTCCT	0.428			NA											19	65					0	0	0.007413	0	0
C1orf107	27042	broad.mit.edu	37	1	210004186	210004186	+	Silent	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:210004186A>G	uc001hhr.1	+	3	262	c.186A>G	c.(184-186)TCA>TCG	p.S62S	C1orf107_uc009xcu.1_5'UTR	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	62					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		AAAGCGACTCAGAGAGTGAAC	0.284			NA											16	55					0	0	0.006122	0	0
Unknown	0	broad.mit.edu	37	1	211380632	211380632	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:211380632G>C	uc001hid.2	+	1	244	c.52G>C	c.(52-54)GTG>CTG	p.V18L						SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												NA						CTGGGACCAAGTGTTCGCCGC	0.617			NA											7	21					0	0	0.004482	0	0
CENPF	1063	broad.mit.edu	37	1	214818608	214818608	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:214818608G>C	uc001hkm.2	+	13	5869	c.5695G>C	c.(5695-5697)GAT>CAT	p.D1899H		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	1995	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GAGATTTCTTGATGTGGAAAA	0.428	Colon(80;575 1284 11000 14801 43496)		NA											17	66					0	0	0.006122	0	0
USH2A	7399	broad.mit.edu	37	1	215972262	215972262	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:215972262G>T	uc001hku.1	-	50	10332	c.9945C>A	c.(9943-9945)TAC>TAA	p.Y3315*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3315	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GAAGGCGATTGTACACCACTC	0.483			NA								HNSCC(13;0.011)			15	67					7.93312e-07	1.09461e-06	0.00245	1	0
USH2A	7399	broad.mit.edu	37	1	216465670	216465670	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:216465670G>T	uc001hku.1	-	10	2074	c.1687C>A	c.(1687-1689)CAA>AAA	p.Q563K	USH2A_uc001hkv.2_Missense_Mutation_p.Q563K	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	563	Laminin EGF-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGATCACCTTGGCGGAAAGGC	0.368			NA								HNSCC(13;0.011)			16	56					8.60227e-14	1.53004e-13	0.004007	1	0
PGBD5	79605	broad.mit.edu	37	1	230492930	230492930	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:230492930C>A	uc010pwb.1	-	2	262	c.262G>T	c.(262-264)GGA>TGA	p.G88*	PGBD5_uc001htv.2_Nonsense_Mutation_p.G187*	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	88						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		ACCCAGGCTCCGTCGCTCCCA	0.567			NA											11	50					0.00010058	0.000121802	0.001368	1	0
RYR2	6262	broad.mit.edu	37	1	237923132	237923132	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:237923132C>T	uc001hyl.1	+	83	11502	c.11382C>T	c.(11380-11382)GCC>GCT	p.A3794A	RYR2_uc010pya.1_Silent_p.A209A	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3794					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGAGCCTGGCCGGCCTGATGC	0.433			NA											18	71					0	0	0.001882	0	0
FMN2	56776	broad.mit.edu	37	1	240256625	240256625	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:240256625C>G	uc010pyd.1	+	1	1441	c.1216C>G	c.(1216-1218)CGC>GGC	p.R406G	FMN2_uc010pye.1_Missense_Mutation_p.R406G	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	406					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GCCTAGCCAGCGCTGTTTCAA	0.692			NA											13	56					0	0	0.001855	0	0
KMO	8564	broad.mit.edu	37	1	241752098	241752098	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:241752098C>A	uc009xgp.2	+	12	1129	c.1064C>A	c.(1063-1065)GCG>GAG	p.A355E	KMO_uc001hyy.2_Missense_Mutation_p.A355E|KMO_uc009xgo.1_Missense_Mutation_p.A355E	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	355					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			GATGATCACGCGATTTCAGAC	0.363			NA											11	40					0.000219431	0.000259743	0.00245	1	0
WDR64	128025	broad.mit.edu	37	1	241886722	241886722	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:241886722G>T	uc001hze.1	+	9	1355	c.1148G>T	c.(1147-1149)AGC>ATC	p.S383I	WDR64_uc001hzf.1_Missense_Mutation_p.S103I			B1ANS9	WDR64_HUMAN	RecName: Full=WD repeat-containing protein 64;	383	WD 4.									skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			CATGTCGTCAGCCTTTCCTCT	0.393			NA											13	40					1.41608e-15	2.62821e-15	0.001855	1	0
CNST	163882	broad.mit.edu	37	1	246823556	246823556	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:246823556G>C	uc001ibp.2	+	10	2270	c.1892G>C	c.(1891-1893)GGA>GCA	p.G631A		NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	631					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GATACTGTAGGAGATCATCCT	0.403			NA											31	106					0	0	0.002096	0	0
NLRP3	114548	broad.mit.edu	37	1	247587867	247587867	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:247587867C>A	uc001icr.2	+	5	1260	c.1122C>A	c.(1120-1122)TCC>TCA	p.S374S	NLRP3_uc001ics.2_Silent_p.S374S|NLRP3_uc001icu.2_Silent_p.S374S|NLRP3_uc001icw.2_Silent_p.S374S|NLRP3_uc001icv.2_Silent_p.S374S|NLRP3_uc010pyw.1_Silent_p.S372S|NLRP3_uc001ict.1_Silent_p.S372S	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	374	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGGGTTTCTCCGAGGCCAAAA	0.552			NA											21	61					4.96729e-08	7.26479e-08	0.008871	1	0
FAM171A1	221061	broad.mit.edu	37	10	15255469	15255469	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:15255469C>A	uc001iob.2	-	8	2125	c.2118G>T	c.(2116-2118)CGG>CGT	p.R706R		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	706	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CGAACCACGCCCGGGGGTGCG	0.557			NA											24	66					3.08376e-08	4.5589e-08	0.00333	1	0
SLC39A12	221074	broad.mit.edu	37	10	18266980	18266980	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:18266980G>T	uc001ipo.2	+	5	1174	c.901G>T	c.(901-903)GAT>TAT	p.D301Y	SLC39A12_uc001ipn.2_Missense_Mutation_p.D301Y|SLC39A12_uc001ipp.2_Missense_Mutation_p.D301Y|SLC39A12_uc010qck.1_Missense_Mutation_p.D167Y	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	301	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						AGAGTCTGAGGATGGTCCAGT	0.368			NA											18	54					1.99824e-07	2.83741e-07	0.00499	1	0
PLXDC2	84898	broad.mit.edu	37	10	20465966	20465966	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:20465966G>T	uc001iqg.1	+	8	1559	c.922G>T	c.(922-924)GAG>TAG	p.E308*	PLXDC2_uc001iqh.1_Nonsense_Mutation_p.E259*|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	308	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CCACCGAGTAGAGCTACAAAT	0.343			NA											9	107					0.000978159	0.00113619	0.000978	1	0
MYO3A	53904	broad.mit.edu	37	10	26455006	26455006	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:26455006C>A	uc001isn.2	+	27	3370	c.3010C>A	c.(3010-3012)CTC>ATC	p.L1004I	MYO3A_uc009xko.1_Missense_Mutation_p.L1004I|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1004	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GTACTACCTTCTCTGCTACAA	0.493			NA											11	233					0.000151284	0.000182557	0.001855	1	0
GAD2	2572	broad.mit.edu	37	10	26581395	26581395	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:26581395G>A	uc001isp.2	+	14	1891	c.1388G>A	c.(1387-1389)GGG>GAG	p.G463E	GAD2_uc001isq.2_Missense_Mutation_p.G463E	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	463					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CTTACCTAGGGGACTACCGGG	0.463			NA											7	74					0	0	0.004482	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37490239	37490239	+	Missense_Mutation	SNP	G	G	A	rs137903346	by1000genomes	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:37490239G>A	uc001iza.1	+	31	2786	c.2687G>A	c.(2686-2688)AGT>AAT	p.S896N		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	952						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GATAAAATAAGTGGAAAATTA	0.328			NA											10	37					0	0	0.000978	0	0
DNAJC12	56521	broad.mit.edu	37	10	69571290	69571290	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:69571290C>A	uc001jnb.2	-	3	457	c.289G>T	c.(289-291)GTG>TTG	p.V97L	DNAJC12_uc001jnc.2_Missense_Mutation_p.V97L	NM_021800	NP_068572	Q9UKB3	DJC12_HUMAN	J domain containing protein 1 isoform a	97					protein folding		heat shock protein binding|unfolded protein binding			breast(1)	1						ACCGTCTTCACTGAGTCATTC	0.507			NA											45	101					1.23103e-26	2.57123e-26	0.003214	1	0
MAT1A	4143	broad.mit.edu	37	10	82036222	82036222	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:82036222G>T	uc001kbw.2	-	6	933	c.678C>A	c.(676-678)GTC>GTA	p.V226V		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	226					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	CGGCCCTGATGACTTGCTCCT	0.607			NA											21	78					4.96729e-08	7.26479e-08	0.008871	1	0
TLL2	7093	broad.mit.edu	37	10	98129868	98129868	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:98129868C>A	uc001kml.1	-	20	3093	c.2867G>T	c.(2866-2868)GGC>GTC	p.G956V		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	956	CUB 5.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		GCTGTCGTAGCCGTCGTAGGC	0.582			NA											9	40					2.17888e-05	2.75588e-05	0.006214	1	0
ABCC2	1244	broad.mit.edu	37	10	101595910	101595910	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:101595910C>A	uc001kqf.2	+	25	3616	c.3477C>A	c.(3475-3477)ATC>ATA	p.I1159I		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	1159	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GGTCCCCAATCTACTCTCACT	0.507			NA											8	78					0.000157383	0.000188254	0.00308	1	0
SORCS3	22986	broad.mit.edu	37	10	106675691	106675691	+	Splice_Site	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:106675691G>A	uc001kyi.1	+	3	1022	c.795_splice	c.e3+1	p.K265_splice		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor							integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CAAAAGGAAGGTAAGAGACTG	0.448	NSCLC(116;1497 1690 7108 13108 14106)		NA											8	50					0	0	0.004482	0	0
SORCS1	114815	broad.mit.edu	37	10	108412220	108412220	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:108412220C>T	uc001kym.2	-	18	2403	c.2395G>A	c.(2395-2397)GGG>AGG	p.G799R	SORCS1_uc001kyl.2_Missense_Mutation_p.G799R|SORCS1_uc009xxs.2_Missense_Mutation_p.G799R|SORCS1_uc001kyn.1_Missense_Mutation_p.G799R|SORCS1_uc001kyo.2_Missense_Mutation_p.G799R	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	799	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		ATCCGCAGCCCCCGCGGGGCT	0.522			NA											17	67					0	0	0.00499	0	0
SHOC2	8036	broad.mit.edu	37	10	112745436	112745436	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:112745436C>T	uc001kzl.3	+	3	1103	c.754C>T	c.(754-756)CAC>TAC	p.H252Y	SHOC2_uc009xxx.2_Missense_Mutation_p.H252Y|SHOC2_uc010qrg.1_5'UTR|SHOC2_uc001kzn.2_Intron	NM_007373	NP_031399	Q9UQ13	SHOC2_HUMAN	soc-2 suppressor of clear homolog	252	LRR 7.				fibroblast growth factor receptor signaling pathway|positive regulation of Ras protein signal transduction|Ras protein signal transduction	nucleus|protein phosphatase type 1 complex	protein phosphatase binding|protein phosphatase regulator activity			ovary(1)|skin(1)	2				Epithelial(162;0.000796)|all cancers(201;0.011)|BRCA - Breast invasive adenocarcinoma(275;0.126)		TCAACTTGAACACCTTCCAAA	0.378			NA											6	70					0	0	0.001984	0	0
GFRA1	2674	broad.mit.edu	37	10	117884798	117884798	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:117884798T>C	uc001lcj.2	-	6	1402	c.704A>G	c.(703-705)TAT>TGT	p.Y235C	GFRA1_uc001lci.2_Missense_Mutation_p.Y230C|GFRA1_uc009xyr.2_Missense_Mutation_p.Y230C	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	235	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		CCTCTCTTCATAGGAGCACAC	0.557	Ovarian(128;329 1725 45498 46808 50759)		NA											7	48					0	0	0.006214	0	0
GPR26	2849	broad.mit.edu	37	10	125426472	125426472	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:125426472C>A	uc001lhh.2	+	1	602	c.549C>A	c.(547-549)CTC>CTA	p.L183L		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	183	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				GCTTCCTGCTCTCCTTCGTCG	0.642			NA											3	20					0.00024832	0.000291915	0.009096	1	0
ECHS1	1892	broad.mit.edu	37	10	135184202	135184202	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr10:135184202T>A	uc001lmu.2	-	2	219	c.148A>T	c.(148-150)ATC>TTC	p.I50F		NM_004092	NP_004083	P30084	ECHM_HUMAN	mitochondrial short-chain enoyl-coenzyme A	50					fatty acid beta-oxidation	mitochondrial matrix	enoyl-CoA hydratase activity|protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;1.62e-06)|OV - Ovarian serous cystadenocarcinoma(35;5.75e-06)|Epithelial(32;7.58e-06)		TTCAGTTGGATCAACCCCACG	0.532	GBM(132;1720 1771 5373 10277 21402)		NA											10	28					0	0	0.008291	0	0
OR52K2	119774	broad.mit.edu	37	11	4471034	4471034	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:4471034G>T	uc001lyz.1	+	1	465	c.465G>T	c.(463-465)GTG>GTT	p.V155V		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCCGGGCTGTGACACTAATGA	0.567			NA											39	63					1.66425e-11	2.74561e-11	0.004878	1	0
OR51E2	81285	broad.mit.edu	37	11	4703209	4703209	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:4703209C>T	uc001lzk.2	-	2	977	c.733G>A	c.(733-735)GGT>AGT	p.G245S		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		AGTACCACACCAATGTGTGAC	0.498			NA											21	49					0	0	0.002299	0	0
HBD	3045	broad.mit.edu	37	11	5255616	5255616	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:5255616C>A	uc001maf.1	-	1	243	c.48G>T	c.(46-48)TGG>TGT	p.W16C		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	16					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCACTTTGCCCCACAGGGCAT	0.502			NA											28	38					2.47511e-08	3.66702e-08	0.008361	1	0
NLRP14	338323	broad.mit.edu	37	11	7070936	7070936	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:7070936G>A	uc001mfb.1	+	6	2481	c.2158G>A	c.(2158-2160)GAT>AAT	p.D720N		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	720					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TGGTTGTCAGGATATCTCTAC	0.378			NA											38	85					0	0	0.004878	0	0
QSER1	79832	broad.mit.edu	37	11	32953390	32953390	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:32953390T>A	uc001mty.2	+	4	466	c.199T>A	c.(199-201)TTC>ATC	p.F67I	QSER1_uc001mtz.1_Missense_Mutation_p.F67I|QSER1_uc001mua.2_5'Flank	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	67										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					TCCCACCACCTTCAGCAATAG	0.443			NA											42	62					0	0	0.002852	0	0
CD44	960	broad.mit.edu	37	11	35223312	35223312	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:35223312G>A	uc001mvu.2	+	9	1565	c.1131G>A	c.(1129-1131)GAG>GAA	p.E377E	CD44_uc001mvv.2_Silent_p.E334E|CD44_uc001mvw.2_Intron|CD44_uc001mvx.2_Intron|CD44_uc001mvy.2_Intron|CD44_uc001mwc.3_Intron|CD44_uc010rer.1_Intron|CD44_uc009ykh.2_Intron|CD44_uc010res.1_Intron|CD44_uc010ret.1_Intron|CD44_uc010reu.1_Intron	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	377	Extracellular (Potential).|Stem.				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	AGGAAGAAGAGACCCCACATT	0.458			NA											21	38					0	0	0.008871	0	0
TTC17	55761	broad.mit.edu	37	11	43465675	43465675	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:43465675G>C	uc001mxi.2	+	18	2595	c.2581G>C	c.(2581-2583)GAA>CAA	p.E861Q	TTC17_uc001mxh.2_Missense_Mutation_p.E918Q|TTC17_uc010rfj.1_Missense_Mutation_p.E861Q|TTC17_uc001mxj.2_Missense_Mutation_p.E688Q	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	861							binding			ovary(5)	5						GAAAAAAGTAGAAACAGGTCA	0.418			NA											15	29					0	0	0.003163	0	0
ZNF408	79797	broad.mit.edu	37	11	46727337	46727337	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:46727337C>A	uc001nde.1	+	5	2317	c.2087C>A	c.(2086-2088)CCC>CAC	p.P696H	ZNF408_uc010rgw.1_Missense_Mutation_p.P688H	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	696					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						GATGCCGCCCCCAGCCTGGTG	0.592	Pancreas(79;698 1390 6545 18745 34127)|Esophageal Squamous(120;1014 1625 12837 24601 49525)		NA											6	9					8.12818e-05	9.89581e-05	0.001984	1	0
OR4A15	81328	broad.mit.edu	37	11	55135827	55135827	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:55135827G>T	uc010rif.1	+	1	468	c.468G>T	c.(466-468)AAG>AAT	p.K156N		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	156	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCATCTGTAAGCCTCTTCATG	0.433			NA											73	134					2.23852e-25	4.60516e-25	0.00361	1	0
GLYAT	10249	broad.mit.edu	37	11	58482866	58482866	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:58482866C>A	uc001nnb.2	-	3	267	c.112G>T	c.(112-114)GGA>TGA	p.G38*	GLYAT_uc001nnc.2_Nonsense_Mutation_p.G38*	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	38					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	AATGGATTTCCATGGTTTATG	0.398			NA											16	48					3.45872e-05	4.3345e-05	0.004007	1	0
OR10V1	390201	broad.mit.edu	37	11	59481200	59481200	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:59481200C>A	uc001nof.1	-	1	119	c.119G>T	c.(118-120)GGT>GTT	p.G40V		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCATTTCCACCGAGGCTGGT	0.443			NA											16	24					9.16793e-09	1.38533e-08	0.00499	1	0
INCENP	3619	broad.mit.edu	37	11	61897761	61897761	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:61897761G>T	uc001nsw.1	+	4	964	c.762G>T	c.(760-762)GCG>GCT	p.A254A	INCENP_uc009ynv.2_Silent_p.A254A|INCENP_uc009ynw.1_Silent_p.A254A|INCENP_uc001nsx.1_Silent_p.A254A	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	254					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						GGCGGTCTGCGTCTAAGCTCA	0.647			NA											26	39					3.6726e-16	6.94844e-16	0.003954	1	0
AHNAK	79026	broad.mit.edu	37	11	62299271	62299271	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:62299271C>A	uc001ntl.2	-	5	2918	c.2618G>T	c.(2617-2619)TGG>TTG	p.W873L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	873					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CTTCAGGTGCCAGTCTGGGCC	0.483			NA											122	262					7.54917e-67	1.64206e-66	0.00361	1	0
MAP4K2	5871	broad.mit.edu	37	11	64564575	64564575	+	Splice_Site	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:64564575C>T	uc001obh.2	-	19	1457	c.1365_splice	c.e19+1	p.E455_splice	MAP4K2_uc001obg.2_5'Flank|MAP4K2_uc001obi.2_Splice_Site_p.E447_splice	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase						activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						CACCCTCTTACCTCAGGATCC	0.652			NA											13	31					0	0	0.001855	0	0
CST6	1474	broad.mit.edu	37	11	65780862	65780862	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:65780862G>T	uc001ogr.2	+	3	495	c.441G>T	c.(439-441)GTG>GTT	p.V147V	CST6_uc001ogs.1_3'UTR	NM_001323	NP_001314	Q15828	CYTM_HUMAN	cystatin M precursor	147					anatomical structure morphogenesis	extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						ACAACTGTGTGCAGATGTGAT	0.562			NA											29	61					1.75199e-13	3.03707e-13	0.007291	1	0
INTS4	92105	broad.mit.edu	37	11	77639510	77639510	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:77639510C>G	uc001oys.2	-	11	1277	c.1249G>C	c.(1249-1251)GTT>CTT	p.V417L	INTS4_uc001oyt.2_RNA|INTS4_uc001oyu.1_Missense_Mutation_p.V417L	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	417	HEAT 7.				snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			AACATGTCAACTAGGAAATCA	0.438			NA											10	21					0	0	0.008291	0	0
GRM5	2915	broad.mit.edu	37	11	88780894	88780894	+	Silent	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:88780894C>G	uc001pcq.2	-	1	347	c.147G>C	c.(145-147)GTG>GTC	p.V49V	GRM5_uc009yvm.2_Silent_p.V49V|GRM5_uc009yvn.1_Silent_p.V49V	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	49	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	GAACTTTGTCCACAGTAGGCT	0.532			NA											6	39					0	0	0.001168	0	0
FAT3	120114	broad.mit.edu	37	11	92531099	92531099	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:92531099C>T	uc001pdj.3	+	9	4937	c.4920C>T	c.(4918-4920)TCC>TCT	p.S1640S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1640	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTGTCCTATCCATCAAAGTCA	0.478			NA								TCGA Ovarian(4;0.039)			19	51					0	0	0.007413	0	0
DDI1	414301	broad.mit.edu	37	11	103908369	103908369	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:103908369C>A	uc001phr.2	+	1	1062	c.819C>A	c.(817-819)GCC>GCA	p.A273A	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	273					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		AGGCTTGTGCCGAGCGATGTA	0.517			NA											32	69					1.45844e-13	2.5411e-13	0.002836	1	0
APOA5	116519	broad.mit.edu	37	11	116661395	116661395	+	Missense_Mutation	SNP	T	T	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:116661395T>G	uc001ppr.2	-	3	558	c.550A>C	c.(550-552)ACC>CCC	p.T184P	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Missense_Mutation_p.T184P|APOA5_uc009yzf.2_Missense_Mutation_p.T184P|APOA5_uc009yzg.2_Missense_Mutation_p.T210P	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	184					acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		AAGCGGCCGGTGTGGTGCACC	0.682			NA											10	37					0	0	0.006214	0	0
OR10G8	219869	broad.mit.edu	37	11	123900680	123900680	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:123900680G>T	uc001pzp.1	+	1	351	c.351G>T	c.(349-351)ATG>ATT	p.M117I		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACAGGGTCATGTCCTGTGATC	0.557			NA											57	85					1.46156e-29	3.081e-29	0.00361	1	0
OR8G2	26492	broad.mit.edu	37	11	124095657	124095657	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:124095657C>A	uc010saf.1	+	1	260	c.260C>A	c.(259-261)TCC>TAC	p.S87Y		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	87						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ATCTGCCATTCCACTATCATT	0.443			NA											57	89					9.72345e-25	1.98836e-24	0.00361	1	0
PANX3	116337	broad.mit.edu	37	11	124487256	124487256	+	Missense_Mutation	SNP	C	C	A	rs144166888		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:124487256C>A	uc001qah.2	+	3	411	c.411C>A	c.(409-411)AGC>AGA	p.S137R		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	137	Cytoplasmic (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		CAGCCCTCAGCTCCGATCTGC	0.597			NA											23	25					1.10513e-12	1.88231e-12	0.002299	1	0
KCNJ5	3762	broad.mit.edu	37	11	128781592	128781592	+	Missense_Mutation	SNP	T	T	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:128781592T>G	uc001qet.2	+	2	738	c.424T>G	c.(424-426)TTC>GTC	p.F142V	KCNJ5_uc009zck.2_Missense_Mutation_p.F142V|KCNJ5_uc001qew.2_Missense_Mutation_p.F142V	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	142					synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CGCTTTCCTGTTCTCCATTGA	0.522	Pancreas(108;2548 5082)|Esophageal Squamous(165;4544 6231)		NA											50	85					0	0	0.00361	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128839708	128839708	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr11:128839708C>A	uc009zcp.2	-	22	5358	c.5358G>T	c.(5356-5358)GGG>GGT	p.G1786G	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Silent_p.G745G|ARHGAP32_uc001qez.2_Silent_p.G1437G	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1786	Interaction with FYN.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TGACATAGATCCCACCCAAGT	0.547			NA											39	63					7.53189e-24	1.52198e-23	0.007835	1	0
CACNA1C	775	broad.mit.edu	37	12	2742805	2742805	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:2742805G>T	uc009zdu.1	+	31	4212	c.3899G>T	c.(3898-3900)AGT>ATT	p.S1300I	CACNA1C_uc009zdv.1_Missense_Mutation_p.S1277I|CACNA1C_uc001qkb.2_Intron|CACNA1C_uc001qkc.2_Intron|CACNA1C_uc001qke.2_Intron|CACNA1C_uc001qkf.2_Intron|CACNA1C_uc001qjz.2_Intron|CACNA1C_uc001qkd.2_Intron|CACNA1C_uc001qkg.2_Intron|CACNA1C_uc009zdw.1_Intron|CACNA1C_uc001qkh.2_Intron|CACNA1C_uc001qkl.2_Missense_Mutation_p.S1300I|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Intron|CACNA1C_uc001qkp.2_Missense_Mutation_p.S1280I|CACNA1C_uc001qkr.2_Missense_Mutation_p.S1280I|CACNA1C_uc001qku.2_Intron|CACNA1C_uc001qkq.2_Missense_Mutation_p.S1280I|CACNA1C_uc001qks.2_Missense_Mutation_p.S1280I|CACNA1C_uc001qkt.2_Missense_Mutation_p.S1280I|CACNA1C_uc001qki.1_Missense_Mutation_p.S1016I|CACNA1C_uc001qkj.1_Missense_Mutation_p.S1016I|CACNA1C_uc001qkk.1_Missense_Mutation_p.S1016I|CACNA1C_uc001qkm.1_Intron	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1300	Cytoplasmic (Potential).|IV.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGTTACTTTAGTGATCCCTGG	0.443			NA											9	65					0.00448238	0.00499424	0.004482	1	0
CACNA1C	775	broad.mit.edu	37	12	2763057	2763057	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:2763057C>A	uc009zdu.1	+	35	4588	c.4275C>A	c.(4273-4275)ATC>ATA	p.I1425I	CACNA1C_uc009zdv.1_Silent_p.I1374I|CACNA1C_uc001qkb.2_Silent_p.I1377I|CACNA1C_uc001qkc.2_Silent_p.I1377I|CACNA1C_uc001qke.2_Silent_p.I1366I|CACNA1C_uc001qkf.2_Silent_p.I1366I|CACNA1C_uc001qjz.2_Silent_p.I1377I|CACNA1C_uc001qkd.2_Silent_p.I1377I|CACNA1C_uc001qkg.2_Silent_p.I1364I|CACNA1C_uc009zdw.1_Silent_p.I1399I|CACNA1C_uc001qkh.2_Silent_p.I1366I|CACNA1C_uc001qkl.2_Silent_p.I1425I|CACNA1C_uc001qkn.2_Silent_p.I1377I|CACNA1C_uc001qko.2_Silent_p.I1397I|CACNA1C_uc001qkp.2_Silent_p.I1377I|CACNA1C_uc001qkr.2_Silent_p.I1394I|CACNA1C_uc001qku.2_Silent_p.I1377I|CACNA1C_uc001qkq.2_Silent_p.I1405I|CACNA1C_uc001qks.2_Silent_p.I1377I|CACNA1C_uc001qkt.2_Silent_p.I1377I|CACNA1C_uc001qki.1_Silent_p.I1113I|CACNA1C_uc001qkj.1_Silent_p.I1113I|CACNA1C_uc001qkk.1_Silent_p.I1113I|CACNA1C_uc001qkm.1_Silent_p.I1102I|CACNA1C_uc010sea.1_Silent_p.I68I	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1425	Helical; Name=S5 of repeat IV; (Potential).|IV.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACGCGGTGATCGGGATGCAGG	0.627			NA											6	23					8.12818e-05	9.89581e-05	0.001984	1	0
NTF3	4908	broad.mit.edu	37	12	5603480	5603480	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:5603480C>A	uc001qnl.3	+	1	183	c.100C>A	c.(100-102)CTC>ATC	p.L34I	NTF3_uc001qnk.3_Missense_Mutation_p.L47I	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	34					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						GCTCAATTCCCTCATTATTAA	0.433	GBM(194;1104 2182 8339 9578 18493)		NA											15	78					2.31682e-05	2.91954e-05	0.003163	1	0
COPS7A	50813	broad.mit.edu	37	12	6839882	6839882	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:6839882C>T	uc001qqj.2	+	7	923	c.684C>T	c.(682-684)GCC>GCT	p.A228A	COPS7A_uc009zex.2_RNA|COPS7A_uc001qqk.2_Intron|COPS7A_uc001qql.2_RNA|COPS7A_uc001qqh.2_Silent_p.A228A|COPS7A_uc001qqi.2_Silent_p.A228A|COPS7A_uc001qqm.2_RNA|COPS7A_uc001qqn.3_Silent_p.A228A|COPS7A_uc001qqo.2_Silent_p.A228A	NM_001164094	NP_001157566	Q9UBW8	CSN7A_HUMAN	COP9 complex subunit 7a	228	Potential.				cullin deneddylation	cytoplasm|signalosome				ovary(1)	1						CAGCAGCAGCCGCAGCCACAT	0.547			NA											10	35					0	0	0.008291	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978098	10978098	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:10978098C>A	uc001qyy.1	-	1	771	c.771G>T	c.(769-771)CTG>CTT	p.L257L		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	257	Extracellular (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						ACATAAGCAGCAGTTTGTTTT	0.383			NA											15	97					0.000219431	0.000259743	0.00245	1	0
H3F3C	440093	broad.mit.edu	37	12	31944778	31944778	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:31944778T>A	uc001rkr.2	-	1	398	c.323A>T	c.(322-324)AAC>ATC	p.N108I		NM_001013699	NP_001013721	Q6NXT2	H3C_HUMAN	histone H3-like	108					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GGCACACAGGTTAGTATCTTC	0.552			NA								HNSCC(67;0.2)			28	85					0	0	0.00632	0	0
WNT1	7471	broad.mit.edu	37	12	49373341	49373341	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:49373341C>A	uc001rsu.2	+	2	393	c.195C>A	c.(193-195)AGC>AGA	p.S65R		NM_005430	NP_005421	P04628	WNT1_HUMAN	wingless-type MMTV integration site family,	65					brain segmentation|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|central nervous system morphogenesis|cerebellum formation|dermatome development|diencephalon development|embryonic axis specification|forebrain anterior/posterior pattern formation|fourth ventricle development|hemopoietic stem cell proliferation|hepatocyte differentiation|inner ear morphogenesis|mesoderm morphogenesis|midbrain development|midbrain-hindbrain boundary maturation during brain development|negative regulation of cell-cell adhesion|negative regulation of cell-substrate adhesion|negative regulation of DNA damage checkpoint|negative regulation of fat cell differentiation|neuron fate determination|positive regulation of fibroblast proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of lamellipodium assembly|positive regulation of Notch signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to wounding|signal transduction in response to DNA damage|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled-2 binding|transcription regulatory region DNA binding			kidney(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.244)		AGCTGTTGAGCCGCAAACAGC	0.602			NA											11	74					0.00829132	0.00914858	0.008291	1	0
MLL2	8085	broad.mit.edu	37	12	49433751	49433751	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:49433751G>A	uc001rta.3	-	31	7802	c.7802C>T	c.(7801-7803)ACA>ATA	p.T2601I		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2601	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GCTCTCCCCTGTGGACCCGCT	0.662			NA	N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			7	13					0	0	0.004482	0	0
TUBA1A	7846	broad.mit.edu	37	12	49580492	49580492	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:49580492C>A	uc009zlf.2	-	2	400	c.128G>T	c.(127-129)GGG>GTG	p.G43V	TUBA1B_uc001rto.2_Missense_Mutation_p.G8V|TUBA1A_uc001rtp.2_Missense_Mutation_p.G43V|TUBA1A_uc001rtq.2_5'UTR|TUBA1A_uc001rtr.2_5'UTR|TUBA1A_uc009zlg.2_Intron	NM_006009	NP_006000	Q71U36	TBA1A_HUMAN	tubulin, alpha 1a	43					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|structural molecule activity				0						ATCTCCTCCCCCAATGGTCTT	0.577	Pancreas(111;782 2307 24613 44561)|NSCLC(165;1667 2752 9496 39006)|Ovarian(19;24 776 10875 37451)		NA											21	84					3.5997e-14	6.453e-14	0.002299	1	0
KRT6B	3854	broad.mit.edu	37	12	52843597	52843597	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:52843597G>C	uc001sak.2	-	4	905	c.857C>G	c.(856-858)GCC>GGC	p.A286G		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	286	Coil 1B.|Rod.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		GTCTGCCTTGGCTTGCAGTTC	0.488			NA											12	99					0	0	0.001368	0	0
KRT73	319101	broad.mit.edu	37	12	53007601	53007601	+	Silent	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:53007601C>G	uc001sas.2	-	5	890	c.855G>C	c.(853-855)ACG>ACC	p.T285T		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	285	Rod.|Linker 12.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGATGATGGACGTGTCGCTGA	0.557			NA											18	90					0	0	0.008871	0	0
KRT77	374454	broad.mit.edu	37	12	53091651	53091651	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:53091651C>A	uc001saw.2	-	2	602	c.573G>T	c.(571-573)GTG>GTT	p.V191V	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	191	Coil 1A.|Rod.					keratin filament	structural molecule activity			ovary(1)	1						TTGTTTGTAGCACCTGGTTCT	0.562			NA											24	124					4.26978e-12	7.1829e-12	0.00333	1	0
HOXC10	3226	broad.mit.edu	37	12	54379646	54379647	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:54379646_54379647CC>AA	uc001sen.2	+	1	701_702	c.603_604CC>AA	c.(601-606)ACCCCC>ACAACC	p.P202T		NM_017409	NP_059105	Q9NYD6	HXC10_HUMAN	homeobox C10	202					positive regulation of cell proliferation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1						TCCCTGAGACCCCCAAGTCCGA	0.634			NA											12	54					0	0	0.004672	0	0
HOXC4	3221	broad.mit.edu	37	12	54447898	54447898	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:54447898G>T	uc001seu.2	+	3	872	c.192G>T	c.(190-192)GAG>GAT	p.E64D	HOXC4_uc001sex.2_Missense_Mutation_p.E64D	NM_014620	NP_055435	P09017	HXC4_HUMAN	homeobox C4	64						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCTACCCTGAGCGCCAGTATA	0.652			NA											27	116					2.14196e-07	3.03518e-07	0.007291	1	0
C12orf66	144577	broad.mit.edu	37	12	64588160	64588160	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:64588160G>C	uc001srw.3	-	3	859	c.800C>G	c.(799-801)GCC>GGC	p.A267G	C12orf66_uc009zql.2_Missense_Mutation_p.A214G	NM_152440	NP_689653	Q96MD2	CL066_HUMAN	hypothetical protein LOC144577	267										ovary(1)	1						GCTAAACTTGGCAAGAAGCAT	0.458			NA											19	78					0	0	0.010504	0	0
LGR5	8549	broad.mit.edu	37	12	71977581	71977581	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:71977581G>T	uc001swl.2	+	18	1839	c.1791G>T	c.(1789-1791)GGG>GGT	p.G597G	LGR5_uc001swm.2_Silent_p.G573G|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	597	Helical; Name=2; (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TGTTAATTGGGGTCATCGCAG	0.502			NA											22	90					1.10513e-12	1.88231e-12	0.002299	1	0
SLC6A15	55117	broad.mit.edu	37	12	85279265	85279265	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:85279265G>T	uc001szv.2	-	4	1016	c.523C>A	c.(523-525)CAA>AAA	p.Q175K	SLC6A15_uc010sul.1_Missense_Mutation_p.Q68K|SLC6A15_uc001szy.2_Missense_Mutation_p.Q175K	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	175	Extracellular (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						GGCAGGGGTTGCTGAAAAGAC	0.363			NA											9	46					0.00829132	0.00914858	0.008291	1	0
SLC17A8	246213	broad.mit.edu	37	12	100784891	100784891	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:100784891C>A	uc010svi.1	+	3	780	c.467C>A	c.(466-468)GCT>GAT	p.A156D	SLC17A8_uc009ztx.2_Missense_Mutation_p.A156D	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	156	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						AAGTTTGCTGCTAACAGGTAA	0.388			NA											16	76					5.01169e-05	6.22361e-05	0.00499	1	0
STAB2	55576	broad.mit.edu	37	12	104056673	104056673	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:104056673C>A	uc001tjw.2	+	18	2105	c.1919C>A	c.(1918-1920)GCC>GAC	p.A640D		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	640	Extracellular (Potential).|FAS1 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GAGATCACTGCCAAAAATGGC	0.423			NA											20	92					1.55795e-14	2.8002e-14	0.001882	1	0
STAB2	55576	broad.mit.edu	37	12	104089331	104089331	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:104089331C>A	uc001tjw.2	+	32	3565	c.3379C>A	c.(3379-3381)CTG>ATG	p.L1127M		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1127	Extracellular (Potential).|FAS1 3.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TTTTCAGGTGCTGGTCCCACA	0.468			NA											6	63					3.59834e-05	4.47662e-05	0.001168	1	0
FOXN4	121643	broad.mit.edu	37	12	109724509	109724509	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:109724509T>A	uc001toe.3	-	7	742	c.637A>T	c.(637-639)AGC>TGC	p.S213C	FOXN4_uc009zvg.2_Missense_Mutation_p.S10C|FOXN4_uc001tof.3_Missense_Mutation_p.S33C	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	213	Fork-head.				axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						ACAGGCAGGCTGCCTGTCTTG	0.473			NA											7	17					0	0	0.001984	0	0
NOS1	4842	broad.mit.edu	37	12	117662918	117662919	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:117662918_117662919CC>AA	uc001twm.1	-	25	4414_4415	c.3728_3729GG>TT	c.(3727-3729)CGG>CTT	p.R1243L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1243					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTTGGGGGTTCCGGGGCAGGTG	0.545	Esophageal Squamous(162;1748 2599 51982 52956)		NA											21	99					0	0	0.004672	0	0
EP400	57634	broad.mit.edu	37	12	132466659	132466659	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:132466659A>T	uc001ujn.2	+	4	1600	c.1565A>T	c.(1564-1566)CAG>CTG	p.Q522L	EP400_uc001ujl.2_Missense_Mutation_p.Q521L|EP400_uc001ujm.2_Missense_Mutation_p.Q522L|EP400_uc001ujj.1_Missense_Mutation_p.Q485L|EP400_uc001ujk.2_Missense_Mutation_p.Q558L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	558					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCCACGCCGCAGGCCGCGCAG	0.602			NA											33	184					0	0	0.003755	0	0
FREM2	341640	broad.mit.edu	37	13	39343846	39343846	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr13:39343846G>A	uc001uwv.2	+	4	5851	c.5542G>A	c.(5542-5544)GAG>AAG	p.E1848K	FREM2_uc001uww.2_5'UTR	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1848	Calx-beta 1.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGGGGAGCATGAGCAGTCTGA	0.552			NA											5	35					0	0	0.000602	0	0
NALCN	259232	broad.mit.edu	37	13	101944629	101944630	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr13:101944629_101944630CC>AA	uc001vox.1	-	8	1076_1077	c.887_888GG>TT	c.(886-888)TGG>TTT	p.W296F	NALCN_uc001voy.2_Missense_Mutation_p.W11F|NALCN_uc001voz.2_Missense_Mutation_p.W296F|NALCN_uc001vpa.2_Missense_Mutation_p.W296F	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	296	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGTAGGAACGCCAACGGGGAAA	0.455			NA											13	20					0	0	0.004672	0	0
SLC10A2	6555	broad.mit.edu	37	13	103705019	103705019	+	Missense_Mutation	SNP	C	C	A	rs143232105		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr13:103705019C>A	uc001vpy.3	-	3	1133	c.536G>T	c.(535-537)GGA>GTA	p.G179V		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	179	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					AACAAACATTCCAATGGAAAC	0.388			NA											14	48					1.36491e-13	2.40267e-13	0.001855	1	0
OR11G2	390439	broad.mit.edu	37	14	20665591	20665591	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:20665591A>T	uc010tlb.1	+	1	97	c.97A>T	c.(97-99)AGG>TGG	p.R33W		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	33	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TACAATTCACAGGCACATGAA	0.448			NA											6	22					0	0	0.001984	0	0
OR11G2	390439	broad.mit.edu	37	14	20665719	20665719	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:20665719G>T	uc010tlb.1	+	1	225	c.225G>T	c.(223-225)CTG>CTT	p.L75L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	75	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TTTACCTCCTGACCCTCATGG	0.562			NA											18	73					8.00594e-06	1.05561e-05	0.007413	1	0
TEP1	7011	broad.mit.edu	37	14	20849471	20849471	+	Splice_Site	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:20849471C>A	uc001vxe.2	-	32	4687	c.4647_splice	c.e32+1	p.L1549_splice	TEP1_uc010ahk.2_Splice_Site_p.L892_splice|TEP1_uc010tlf.1_Splice_Site|TEP1_uc010tlg.1_Splice_Site_p.L1441_splice|TEP1_uc010tlh.1_Splice_Site	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1						telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TAGGAACTAACCAGGTGGTAA	0.557			NA											49	147					2.73381e-35	5.85326e-35	0.00361	1	0
FLJ10357	55701	broad.mit.edu	37	14	21549125	21549125	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:21549125G>T	uc001vzp.2	+	13	2619	c.2590G>T	c.(2590-2592)GTT>TTT	p.V864F	FLJ10357_uc001vzo.1_5'UTR|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Missense_Mutation_p.V150F	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	864	Potential.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GCTGGAGCAGGTTGAGAGTGG	0.607			NA											21	113					1.85244e-09	2.88204e-09	0.00333	1	0
TINF2	26277	broad.mit.edu	37	14	24709508	24709508	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:24709508G>A	uc001woa.3	-	7	1432	c.1090C>T	c.(1090-1092)CTG>TTG	p.L364L	TINF2_uc010alm.2_3'UTR|TINF2_uc001wob.3_3'UTR|TINF2_uc010tof.1_Silent_p.L329L|TINF2_uc001woc.3_3'UTR	NM_001099274	NP_001092744	Q9BSI4	TINF2_HUMAN	TERF1 (TRF1)-interacting nuclear factor 2	364					negative regulation of epithelial cell proliferation|negative regulation of protein ADP-ribosylation|negative regulation of telomere maintenance via telomerase|positive regulation of telomere maintenance|protein localization to chromosome, telomeric region|telomere assembly|telomere maintenance via telomere lengthening	nuclear telomere cap complex|nucleoplasm|perinucleolar chromocenter	protein binding|protein binding|telomeric DNA binding				0				GBM - Glioblastoma multiforme(265;0.0185)		GATAGTCTCAGGGGGTCCATG	0.502			NA							Ataxia_Pancytopenia_syndrome|Congenital_Dyskeratosis				6	67					0	0	0.001984	0	0
TGM1	7051	broad.mit.edu	37	14	24724007	24724007	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:24724007C>A	uc001wod.2	-	13	2075	c.1951G>T	c.(1951-1953)GCC>TCC	p.A651S	TGM1_uc010tog.1_Missense_Mutation_p.A209S	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	651					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	TCCTTGTAGGCCACTGGCATG	0.627			NA											13	40					7.03913e-09	1.06838e-08	0.001368	1	0
AKAP6	9472	broad.mit.edu	37	14	33014693	33014693	+	Silent	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:33014693T>A	uc001wrq.2	+	4	1004	c.834T>A	c.(832-834)GCT>GCA	p.A278A	AKAP6_uc010aml.2_Silent_p.A275A	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	278					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TTACGGTAGCTGCTGACTCTA	0.453	Melanoma(49;821 1200 7288 13647 42351)		NA											28	84					0	0	0.009535	0	0
NPAS3	64067	broad.mit.edu	37	14	33684570	33684570	+	Missense_Mutation	SNP	A	A	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:33684570A>C	uc001wru.2	+	3	387	c.323A>C	c.(322-324)AAC>ACC	p.N108T	NPAS3_uc001wrs.2_Missense_Mutation_p.N78T|NPAS3_uc001wrt.2_Missense_Mutation_p.N78T|NPAS3_uc001wrv.2_Missense_Mutation_p.N78T|NPAS3_uc001wrw.2_Missense_Mutation_p.N6T	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		GACTTTGCTAACCAGGGGGAC	0.478			NA											24	67					0	0	0.00333	0	0
BAZ1A	11177	broad.mit.edu	37	14	35243648	35243648	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:35243648G>T	uc001wsk.2	-	19	3450	c.2882C>A	c.(2881-2883)TCC>TAC	p.S961Y	BAZ1A_uc001wsl.2_Missense_Mutation_p.S929Y	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	961					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		ATATGCATTGGAAGATCTTCC	0.333			NA											16	93					5.03518e-11	8.14936e-11	0.007413	1	0
RALGAPA1	253959	broad.mit.edu	37	14	36225998	36225998	+	Splice_Site	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:36225998C>A	uc001wti.2	-	7	1054	c.663_splice	c.e7+1	p.Q221_splice	RALGAPA1_uc001wtj.2_Splice_Site_p.Q221_splice|RALGAPA1_uc010tpv.1_Splice_Site_p.Q221_splice|RALGAPA1_uc010tpw.1_Splice_Site_p.Q221_splice|RALGAPA1_uc001wtk.1_Splice_Site_p.Q72_splice	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1						activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						ATAACAAGTACCTGAATGACT	0.373			NA											3	53					0.004672	0.00517176	0.004672	1	0
MIPOL1	145282	broad.mit.edu	37	14	37754522	37754522	+	Splice_Site	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:37754522G>T	uc001wuc.2	+	8	997	c.494_splice	c.e8-1	p.A165_splice	MIPOL1_uc010amr.2_Intron|MIPOL1_uc001wub.3_Splice_Site_p.A134_splice|MIPOL1_uc001wud.2_Splice_Site_p.A165_splice|MIPOL1_uc010ams.2_Splice_Site_p.A165_splice|MIPOL1_uc001wue.2_Splice_Site_p.A134_splice|MIPOL1_uc010amt.2_Splice_Site	NM_138731	NP_620059	Q8TD10	MIPO1_HUMAN	mirror-image polydactyly 1											ovary(1)|central_nervous_system(1)	2	Breast(36;0.119)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;6.03e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.047)|all cancers(34;0.0953)|LUSC - Lung squamous cell carcinoma(13;0.0975)|BRCA - Breast invasive adenocarcinoma(188;0.196)	GBM - Glioblastoma multiforme(112;0.0358)		TATTTTGGTAGCTCTGGTTGA	0.358			NA											28	98					1.39649e-27	2.92577e-27	0.002445	1	0
LRFN5	145581	broad.mit.edu	37	14	42355965	42355965	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:42355965C>A	uc001wvm.2	+	3	1335	c.137C>A	c.(136-138)CCA>CAA	p.P46Q	LRFN5_uc010ana.2_Missense_Mutation_p.P46Q	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	46	Extracellular (Potential).|LRRNT.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TTATTTGTTCCACCAAACATT	0.408			NA								HNSCC(30;0.082)			9	35					0.00448238	0.00499424	0.004482	1	0
SLC38A6	145389	broad.mit.edu	37	14	61451499	61451499	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:61451499G>T	uc001xfg.1	+	3	404	c.288G>T	c.(286-288)CTG>CTT	p.L96L	SLC38A6_uc001xfh.1_Silent_p.L96L|SLC38A6_uc001xfi.2_RNA|SLC38A6_uc001xfj.1_RNA|SLC38A6_uc001xfk.2_RNA|SLC38A6_uc010trz.1_Silent_p.L73L	NM_153811	NP_722518	Q8IZM9	S38A6_HUMAN	solute carrier family 38, member 6	96	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		TCCATCTTCTGCTTAGTATGT	0.383			NA											20	77					2.39556e-15	4.38652e-15	0.00278	1	0
BTBD7	55727	broad.mit.edu	37	14	93712551	93712551	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:93712551C>A	uc001ybo.2	-	10	2529	c.2203G>T	c.(2203-2205)GTA>TTA	p.V735L	BTBD7_uc010aur.2_Missense_Mutation_p.V260L|BTBD7_uc010two.1_Missense_Mutation_p.V555L|BTBD7_uc001ybp.2_Missense_Mutation_p.V384L	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	735										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		GTACTGTTTACGCGACATCTC	0.473			NA											35	102					1.45844e-13	2.5411e-13	0.002836	1	0
KIAA1409	57578	broad.mit.edu	37	14	94089109	94089109	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:94089109G>T	uc001ybv.1	+	28	5148	c.5065G>T	c.(5065-5067)GCT>TCT	p.A1689S	KIAA1409_uc001ybs.1_Missense_Mutation_p.A1667S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1844						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GAGGAAGATTGCTGTCAGTGC	0.468			NA											10	32					1.58986e-06	2.1588e-06	0.008291	1	0
KIAA1409	57578	broad.mit.edu	37	14	94156483	94156483	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:94156483G>T	uc001ybv.1	+	44	6841	c.6758G>T	c.(6757-6759)TGT>TTT	p.C2253F	KIAA1409_uc001ybs.1_Missense_Mutation_p.C2231F	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2408						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TTCATTGAGTGTGTCTCCCAT	0.448			NA											21	61					3.62473e-10	5.73077e-10	0.001882	1	0
C14orf49	161176	broad.mit.edu	37	14	95922038	95922038	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:95922038C>A	uc001yei.3	-	5	828	c.813G>T	c.(811-813)AGG>AGT	p.R271S	C14orf49_uc010avi.2_Missense_Mutation_p.R271S|C14orf49_uc001yej.1_Missense_Mutation_p.R271S	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	271	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		ACTCCTCGCCCCTGGGAAAAT	0.532			NA											10	79					2.17888e-05	2.75588e-05	0.006214	1	0
CINP	51550	broad.mit.edu	37	14	102829188	102829188	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:102829188T>C	uc001ylv.1	-	1	66	c.1A>G	c.(1-3)ATG>GTG	p.M1V	TECPR2_uc010txw.1_5'Flank|TECPR2_uc010awl.2_5'Flank|TECPR2_uc001ylw.1_5'Flank|TECPR2_uc010txx.1_5'Flank	NM_032630	NP_116019	Q9BW66	CINP_HUMAN	cyclin-dependent kinase 2-interacting protein	1					cell cycle|cell division|DNA repair|DNA replication	nucleus	protein binding			large_intestine(1)	1						GCACCTTCCATAAGGTCCACA	0.622			NA											5	34					0	0	0.000602	0	0
TECPR2	9895	broad.mit.edu	37	14	102891368	102891368	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr14:102891368C>G	uc001ylw.1	+	6	839	c.691C>G	c.(691-693)CTA>GTA	p.L231V	TECPR2_uc010txw.1_3'UTR|TECPR2_uc010awl.2_Missense_Mutation_p.L231V|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	231							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GCAAAGTGATCTAACCTTGTA	0.448			NA											29	77					0	0	0.003271	0	0
OCA2	4948	broad.mit.edu	37	15	28096612	28096612	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:28096612G>T	uc001zbh.3	-	22	2364	c.2254C>A	c.(2254-2256)CTC>ATC	p.L752I	OCA2_uc010ayv.2_Missense_Mutation_p.L728I	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	752	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		AGGTTCAGGAGCACGGGAATC	0.572			NA							Oculocutaneous_Albinism				4	13					2.56e-06	3.43513e-06	0.009096	1	0
PGBD4	161779	broad.mit.edu	37	15	34396468	34396468	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:34396468A>T	uc001zho.2	+	1	2195	c.1736A>T	c.(1735-1737)TAC>TTC	p.Y579F	C15orf24_uc001zhm.2_5'Flank|C15orf24_uc001zhn.2_5'Flank	NM_152595	NP_689808	Q96DM1	PGBD4_HUMAN	piggyBac transposable element derived 4	579											0		all_lung(180;1.76e-08)		all cancers(64;1.22e-17)|GBM - Glioblastoma multiforme(113;1.78e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0242)		TTTGAAATTTACCACACGAAA	0.259			NA											21	50					0	0	0.00278	0	0
AQR	9716	broad.mit.edu	37	15	35202392	35202392	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:35202392C>T	uc001ziv.2	-	17	1788	c.1607G>A	c.(1606-1608)CGT>CAT	p.R536H		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	536						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		AACATCTGCACGAACTCGGGT	0.448			NA											26	101					0	0	0.008361	0	0
UBR1	197131	broad.mit.edu	37	15	43374882	43374882	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:43374882C>G	uc001zqq.2	-	3	437	c.371G>C	c.(370-372)TGT>TCT	p.C124S	UBR1_uc010udk.1_Missense_Mutation_p.C124S	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	124	UBR-type.				cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		GCAGTCCATACAGAGTACACA	0.274			NA											4	54					0	0	0.009096	0	0
SEMA6D	80031	broad.mit.edu	37	15	48053408	48053408	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:48053408C>A	uc010bek.2	+	5	696	c.336C>A	c.(334-336)GGC>GGA	p.G112G	SEMA6D_uc001zvw.2_Silent_p.G112G|SEMA6D_uc001zvx.1_Silent_p.G112G|SEMA6D_uc001zvy.2_Silent_p.G112G|SEMA6D_uc001zvz.2_Silent_p.G112G|SEMA6D_uc001zwa.2_Silent_p.G112G|SEMA6D_uc001zwb.2_Silent_p.G112G|SEMA6D_uc001zwc.2_Silent_p.G112G	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	112	Sema.|Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		CTATGAAAGGCAAGCATAAAG	0.373			NA											5	42					3.59834e-05	4.47662e-05	0.001168	1	0
SLC12A1	6557	broad.mit.edu	37	15	48577447	48577447	+	Splice_Site	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:48577447G>T	uc001zwn.3	+	21	2845	c.2629_splice	c.e21+1	p.D877_splice	SLC12A1_uc001zwq.3_Splice_Site_p.D648_splice|SLC12A1_uc001zwr.3_Splice_Site_p.D604_splice	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2						potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	CCTAAAAAAGGTAAGAACTTT	0.368			NA											19	51					4.96729e-08	7.26479e-08	0.008871	1	0
CYP19A1	1588	broad.mit.edu	37	15	51514613	51514613	+	Silent	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:51514613C>G	uc001zyz.3	-	6	812	c.561G>C	c.(559-561)GTG>GTC	p.V187V	CYP19A1_uc001zza.3_Silent_p.V187V|CYP19A1_uc001zzb.2_Silent_p.V187V|CYP19A1_uc001zzd.2_Silent_p.V187V|CYP19A1_uc010bey.1_Silent_p.V187V	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	187					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	GAAGGGTCAACACGTCCACAT	0.512	Melanoma(142;1016 1807 39614 48966 51721)		NA											10	39					0	0	0.000978	0	0
NEDD4	4734	broad.mit.edu	37	15	56208095	56208095	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:56208095C>A	uc002adj.2	-	1	1235	c.935G>T	c.(934-936)GGC>GTC	p.G312V	NEDD4_uc002adl.2_Intron|NEDD4_uc002adi.2_Missense_Mutation_p.G312V|NEDD4_uc010ugj.1_Missense_Mutation_p.G312V|NEDD4_uc010bfm.2_Missense_Mutation_p.G312V|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	312					development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		AGCACTAGTGCCATCCTCATT	0.413			NA											11	97					6.40141e-05	7.90626e-05	0.000978	1	0
CGNL1	84952	broad.mit.edu	37	15	57731566	57731566	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:57731566G>T	uc002aeg.2	+	2	1445	c.1369G>T	c.(1369-1371)GCC>TCC	p.A457S	CGNL1_uc010bfw.2_Missense_Mutation_p.A457S	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	457	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GGCTTCATGTGCCCACTCCAG	0.622			NA											14	34					7.93312e-07	1.09461e-06	0.00245	1	0
VPS13C	54832	broad.mit.edu	37	15	62161820	62161820	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:62161820C>G	uc002agz.2	-	80	10701	c.10627G>C	c.(10627-10629)GCC>CCC	p.A3543P	VPS13C_uc002aha.2_Missense_Mutation_p.A3500P|VPS13C_uc002ahb.1_Missense_Mutation_p.A3543P|VPS13C_uc002ahc.1_Missense_Mutation_p.A3500P	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3543					protein localization					ovary(2)	2						TCCTTTTTGGCACCTTCAGAA	0.443			NA											11	89					0	0	0.001368	0	0
ZWILCH	55055	broad.mit.edu	37	15	66838952	66838952	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:66838952G>T	uc002aqb.2	+	18	1957	c.1711G>T	c.(1711-1713)GGT>TGT	p.G571C	ZWILCH_uc010bhu.1_Missense_Mutation_p.G457C|ZWILCH_uc002aqa.2_Missense_Mutation_p.G457C|ZWILCH_uc010bhv.2_Missense_Mutation_p.G457C	NM_017975	NP_060445	Q9H900	ZWILC_HUMAN	Zwilch	571					cell division|mitotic cell cycle checkpoint|mitotic prometaphase	condensed chromosome kinetochore|cytosol	protein binding			ovary(1)	1						AACACTAAACGGTAGCCTGGA	0.373			NA											7	54					2.17888e-05	2.75588e-05	0.006214	1	0
ISLR2	57611	broad.mit.edu	37	15	74427168	74427168	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:74427168G>C	uc002axd.2	+	4	2842	c.2073G>C	c.(2071-2073)CAG>CAC	p.Q691H	ISLR2_uc002axe.2_Missense_Mutation_p.Q691H|ISLR2_uc010bjg.2_Missense_Mutation_p.Q691H|ISLR2_uc010bjf.2_Missense_Mutation_p.Q691H	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	691	Cytoplasmic (Potential).				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						GGGACCTGCAGAGAGAGGAGA	0.687			NA									OREG0023277	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	42					0	0	0.004672	0	0
CTSH	1512	broad.mit.edu	37	15	79229742	79229742	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:79229742C>T	uc002ben.2	-	4	208	c.111G>A	c.(109-111)GAG>GAA	p.E37E	CTSH_uc010unf.1_RNA|CTSH_uc010bll.1_Intron|CTSH_uc010ung.1_Silent_p.E49E	NM_148979	NP_683880	P09668	CATH_HUMAN	cathepsin H isoform b precursor	49					protein destabilization|proteolysis	lysosome	cysteine-type endopeptidase activity			central_nervous_system(2)|large_intestine(1)	3						GGTGGTACTCCTCCGTACTGT	0.493			NA											13	39					0	0	0.00245	0	0
RASGRF1	5923	broad.mit.edu	37	15	79294032	79294032	+	Silent	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:79294032G>C	uc002beq.2	-	17	2970	c.2595C>G	c.(2593-2595)CCC>CCG	p.P865P	RASGRF1_uc002bep.2_Silent_p.P849P|RASGRF1_uc010blm.1_Silent_p.P774P|RASGRF1_uc002ber.3_Silent_p.P849P|RASGRF1_uc010unh.1_Silent_p.P260P|RASGRF1_uc002beo.2_Silent_p.P81P	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	867					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						TGACTGATTTGGGTGTTGTTG	0.408			NA											23	121					0	0	0.003954	0	0
TMED3	23423	broad.mit.edu	37	15	79614470	79614470	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:79614470C>T	uc002beu.2	+	3	669	c.568C>T	c.(568-570)CTG>TTG	p.L190L	TMED3_uc010unj.1_Intron|TMED3_uc002bev.2_RNA	NM_007364	NP_031390	Q9Y3Q3	TMED3_HUMAN	transmembrane emp24 domain containing 3	190	Helical; (Potential).				protein transport	ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane				ovary(1)|skin(1)	2						GACGATTGCCCTGTTCGTGGT	0.582			NA											17	66					0	0	0.004007	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651157	84651157	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:84651157C>A	uc002bjz.3	+	21	3001	c.2777C>A	c.(2776-2778)CCC>CAC	p.P926H	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P926H|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P926H	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	926	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TATTTGCTGCCCAACACATCC	0.517			NA											12	86					7.03913e-09	1.06838e-08	0.001368	1	0
ZNF592	9640	broad.mit.edu	37	15	85345402	85345402	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:85345402G>T	uc002bld.2	+	11	3918	c.3582G>T	c.(3580-3582)ATG>ATT	p.M1194I	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	1194					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CAGCGGAGATGGCAGTGGAGG	0.547			NA											5	13					1.23904e-05	1.59673e-05	0.000602	1	0
NTRK3	4916	broad.mit.edu	37	15	88680653	88680653	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:88680653T>A	uc002bme.1	-	6	766	c.604A>T	c.(604-606)ATG>TTG	p.M202L	NTRK3_uc002bmh.2_Missense_Mutation_p.M202L|NTRK3_uc002bmf.1_Missense_Mutation_p.M202L|NTRK3_uc010upl.1_Missense_Mutation_p.M104L|NTRK3_uc010bnh.1_Missense_Mutation_p.M202L|NTRK3_uc002bmg.2_Missense_Mutation_p.M202L	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	202	Extracellular (Potential).|LRRCT.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTGATGTTCATGCGGAAGAGA	0.612			NA	T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			6	29					0	0	0.001984	0	0
RLBP1	6017	broad.mit.edu	37	15	89761919	89761919	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:89761919G>T	uc002bnl.2	-	4	398	c.18C>A	c.(16-18)GGC>GGA	p.G6G		NM_000326	NP_000317	P12271	RLBP1_HUMAN	retinaldehyde binding protein 1	6					response to stimulus|visual perception|vitamin A metabolic process	cytoplasm|soluble fraction	retinol binding|transporter activity			central_nervous_system(1)	1	Lung NSC(78;0.0472)|all_lung(78;0.089)				Vitamin A(DB00162)	TGCGGAACGTGCCCACCTGGG	0.582			NA											11	33					1.33987e-11	2.22119e-11	0.008291	1	0
SOLH	6650	broad.mit.edu	37	16	597502	597502	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:597502G>T	uc002chi.2	+	4	1027	c.664G>T	c.(664-666)GCC>TCC	p.A222S	SOLH_uc002chh.1_Missense_Mutation_p.A222S	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	222					proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				GGGCCCAGCTGCCGAACCAGA	0.751			NA											6	33					0.00307968	0.00347099	0.00308	1	0
ZNF598	90850	broad.mit.edu	37	16	2048807	2048807	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:2048807A>T	uc002cof.1	-	13	2272	c.2257T>A	c.(2257-2259)TTC>ATC	p.F753I	ZNF598_uc002coe.1_Missense_Mutation_p.F117I	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	753						intracellular	zinc ion binding			lung(1)|breast(1)	2						CTCTCCCGGAAGTTCTCGGGG	0.617			NA											3	6					0	0	0.004672	0	0
PGP	283871	broad.mit.edu	37	16	2263992	2263992	+	Nonsense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:2263992T>A	uc002cpk.1	-	2	747	c.703A>T	c.(703-705)AAG>TAG	p.K235*	C16orf79_uc002cpi.1_5'Flank|C16orf79_uc010bsh.2_5'Flank|PGP_uc010uvz.1_RNA	NM_001042371	NP_001035830	A6NDG6	PGP_HUMAN	phosphoglycolate phosphatase	235					carbohydrate metabolic process		phosphoglycolate phosphatase activity			skin(1)	1						CGGCTGGGCTTCCCGATGATG	0.652	GBM(63;906 1080 2092 17773 18795)		NA											12	83					0	0	0.003163	0	0
SRRM2	23524	broad.mit.edu	37	16	2813501	2813501	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:2813501G>T	uc002crk.2	+	11	3521	c.2972G>T	c.(2971-2973)GGG>GTG	p.G991V	SRRM2_uc002crj.1_Missense_Mutation_p.G895V|SRRM2_uc002crl.1_Missense_Mutation_p.G991V|SRRM2_uc010bsu.1_Missense_Mutation_p.G895V	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	991	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AGTCACTCAGGGTCTATTTCA	0.473			NA											31	156					9.45814e-24	1.90558e-23	0.004878	1	0
ZNF205	7755	broad.mit.edu	37	16	3170215	3170215	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:3170215C>T	uc002cub.2	+	7	1689	c.1554C>T	c.(1552-1554)AAC>AAT	p.N518N	ZNF205_uc002cua.2_Silent_p.N518N	NM_001042428	NP_001035893	O95201	ZN205_HUMAN	zinc finger protein 205	518	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						GGCGCTCCAACCTGCACCGGC	0.627			NA											9	51					0	0	0.006214	0	0
NAGPA	51172	broad.mit.edu	37	16	5078957	5078957	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:5078957C>A	uc002cyg.2	-	5	865	c.844G>T	c.(844-846)GCC>TCC	p.A282S	NAGPA_uc010buc.2_Missense_Mutation_p.A13S|NAGPA_uc002cyf.2_Missense_Mutation_p.A140S|NAGPA_uc002cyh.2_RNA|NAGPA_uc002cyi.2_Missense_Mutation_p.A57S	NM_016256	NP_057340	Q9UK23	NAGPA_HUMAN	N-acetylglucosamine-1-phosphodiester	282	Lumenal (Potential).				carbohydrate metabolic process|lysosome organization|protein modification process|protein targeting to lysosome	Golgi cisterna membrane|integral to membrane	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity				0					N-Acetyl-D-glucosamine(DB00141)	AGGTTGATGGCGTTGACCACG	0.597			NA											23	122					1.10923e-09	1.73763e-09	0.00278	1	0
USP7	7874	broad.mit.edu	37	16	8999094	8999094	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:8999094C>A	uc002czl.2	-	14	1722	c.1523G>T	c.(1522-1524)CGA>CTA	p.R508L	USP7_uc010uyk.1_Missense_Mutation_p.R409L|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.R409L|USP7_uc002czk.2_Missense_Mutation_p.R492L|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	508					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						AGTGCAGTGTCGAACAGACAG	0.433			NA									OREG0023595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	93					0.00244969	0.00278857	0.00245	1	0
CIITA	4261	broad.mit.edu	37	16	10997612	10997612	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:10997612T>C	uc002dai.3	+	9	930	c.797T>C	c.(796-798)GTA>GCA	p.V266A	CIITA_uc002daj.3_Missense_Mutation_p.V267A|CIITA_uc002dak.3_Missense_Mutation_p.V217A|CIITA_uc002dag.2_Missense_Mutation_p.V266A|CIITA_uc002dah.2_Missense_Mutation_p.V218A|CIITA_uc010bup.1_Missense_Mutation_p.V266A	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	266					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						GCCAGCCAAGTACCCCCTCCC	0.602			NA	T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								9	117					0	0	0.004482	0	0
UMOD	7369	broad.mit.edu	37	16	20359765	20359765	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:20359765G>T	uc002dgz.2	-	3	987	c.858C>A	c.(856-858)TAC>TAA	p.Y286*	UMOD_uc002dha.2_Nonsense_Mutation_p.Y286*|UMOD_uc002dhb.2_Nonsense_Mutation_p.Y319*	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	286					cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						GACCTGTGCAGTACGCCAGGT	0.632			NA											10	36					0.000673444	0.00078626	0.008291	1	0
OTOA	146183	broad.mit.edu	37	16	21698784	21698784	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:21698784G>T	uc002djh.2	+	7	451	c.450G>T	c.(448-450)TTG>TTT	p.L150F	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.L71F	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	150					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		AACGAGCCTTGCAGAGCCCTG	0.522			NA											23	103					2.12542e-12	3.61109e-12	0.00632	1	0
VWA3A	146177	broad.mit.edu	37	16	22142978	22142978	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:22142978C>G	uc010vbq.1	+	19	1896	c.1800C>G	c.(1798-1800)GAC>GAG	p.D600E	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Missense_Mutation_p.D608E	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	600	VWFA 1.					extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		TGGAAGTAGACTTCAAGGACA	0.607			NA											11	22					0	0	0.001368	0	0
CACNG3	10368	broad.mit.edu	37	16	24372671	24372671	+	Splice_Site	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:24372671A>T	uc002dmf.2	+	4	1637	c.437_splice	c.e4-2	p.G146_splice		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3						regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CCCTTCTCTTAGGGTTAAGCA	0.428			NA											27	134					0	0	0.00632	0	0
C16orf82	162083	broad.mit.edu	37	16	27078574	27078574	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:27078574C>G	uc010vcm.1	+	1	356	c.258C>G	c.(256-258)AGC>AGG	p.S86R		NM_001145545	NP_001139017	Q7Z2V1	TNT_HUMAN	hypothetical protein LOC162083	149											0						GCCATGCCAGCCTGAGCAGCG	0.642			NA											7	19					0	0	0.001984	0	0
LAT	27040	broad.mit.edu	37	16	28996747	28996747	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:28996747G>T	uc002dsd.2	+	1	361	c.9G>T	c.(7-9)GAG>GAT	p.E3D	uc010vct.1_Intron|SPNS1_uc010byq.1_3'UTR|LAT_uc010vdj.1_Missense_Mutation_p.E39D|LAT_uc002dsb.2_Missense_Mutation_p.E3D|LAT_uc002dsc.2_Missense_Mutation_p.E3D|LAT_uc010vdk.1_Missense_Mutation_p.E3D|LAT_uc010vdl.1_Missense_Mutation_p.E3D	NM_014387	NP_055202	O43561	LAT_HUMAN	linker for activation of T cells isoform a	3	Extracellular (Potential).				calcium-mediated signaling|integrin-mediated signaling pathway|mast cell degranulation|platelet activation|Ras protein signal transduction|regulation of T cell activation|T cell receptor signaling pathway	immunological synapse|integral to membrane|intracellular|membrane raft	SH3/SH2 adaptor activity				0		Hepatocellular(780;0.244)				AGATGGAGGAGGCCATCCTGG	0.657			NA											5	64					1.024e-07	1.48491e-07	0.000602	1	0
SRCAP	10847	broad.mit.edu	37	16	30749056	30749056	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:30749056G>T	uc002dze.1	+	34	8080	c.7695G>T	c.(7693-7695)GAG>GAT	p.E2565D	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.E2360D	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2565	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AGTCCCTGGAGCTGGCTTCTG	0.557			NA											20	78					0.000958276	0.0011169	0.007413	1	0
STX1B	112755	broad.mit.edu	37	16	31012463	31012463	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:31012463C>A	uc010cad.2	-	3	269	c.157G>T	c.(157-159)GTG>TTG	p.V53L	STX1B_uc010vfd.1_Missense_Mutation_p.V53L	NM_052874	NP_443106	P61266	STX1B_HUMAN	syntaxin 1B	53	Potential.|Cytoplasmic (Potential).				intracellular protein transport|neurotransmitter transport|synaptic transmission	integral to plasma membrane	extracellular-glutamate-gated ion channel activity|SNAP receptor activity				0						TGTTTTTTCACCTGCTCCACA	0.582			NA											10	70					1.76689e-08	2.62345e-08	0.006214	1	0
CCDC135	84229	broad.mit.edu	37	16	57760106	57760106	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:57760106G>T	uc002emi.2	+	13	1974	c.1885G>T	c.(1885-1887)GCC>TCC	p.A629S	CCDC135_uc002emj.2_Missense_Mutation_p.A629S|CCDC135_uc002emk.2_Missense_Mutation_p.A564S	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	629						cytoplasm				central_nervous_system(1)	1						CCACATCACGGCCTCCAAGCG	0.652			NA											14	39					4.3838e-07	6.16077e-07	0.001855	1	0
FTSJD1	55783	broad.mit.edu	37	16	71319360	71319360	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:71319360T>A	uc010cga.2	-	3	870	c.464A>T	c.(463-465)AAC>ATC	p.N155I	FTSJD1_uc002ezy.3_Missense_Mutation_p.N155I|FTSJD1_uc002ezz.3_Missense_Mutation_p.N155I	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	155						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						TAAGTAGTGGTTGAGACTAGC	0.413			NA											27	72					0	0	0.00632	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76513435	76513435	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:76513435G>T	uc002feu.1	+	14	2267	c.1882G>T	c.(1882-1884)GAA>TAA	p.E628*	CNTNAP4_uc002fev.1_Nonsense_Mutation_p.E492*|CNTNAP4_uc010chb.1_Nonsense_Mutation_p.E555*|CNTNAP4_uc002fex.1_Nonsense_Mutation_p.E631*|CNTNAP4_uc002few.2_Nonsense_Mutation_p.E603*	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	628	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CAATATGACCGGTGAGTTAAT	0.333			NA											21	62					1.00905e-13	1.78082e-13	0.008871	1	0
CNTNAP4	85445	broad.mit.edu	37	16	76569441	76569441	+	Splice_Site	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr16:76569441G>T	uc002feu.1	+	20	3141	c.2756_splice	c.e20-1	p.G919_splice	CNTNAP4_uc002fev.1_Splice_Site_p.G783_splice|CNTNAP4_uc010chb.1_Splice_Site_p.G846_splice|CNTNAP4_uc002fex.1_Splice_Site_p.G922_splice	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1						cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TTCCCTTTTAGGTGGAACGGC	0.463			NA											13	29					4.3838e-07	6.16077e-07	0.001855	1	0
TRPV3	162514	broad.mit.edu	37	17	3448539	3448539	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:3448539C>A	uc002fvt.1	-	3	468	c.146G>T	c.(145-147)GGG>GTG	p.G49V	TRPV3_uc010vrh.1_Missense_Mutation_p.G33V|TRPV3_uc010vri.1_Missense_Mutation_p.G33V|TRPV3_uc010vrj.1_Missense_Mutation_p.G33V|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.G33V|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.G49V|TRPV3_uc002fvu.2_Missense_Mutation_p.G49V	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	49	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GGGTTCAAACCCTTCTATCTC	0.552			NA											16	42					0.00400662	0.00450828	0.004007	1	0
ITGAE	3682	broad.mit.edu	37	17	3649152	3649152	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:3649152C>A	uc002fwo.3	-	18	2324	c.2225G>T	c.(2224-2226)TGT>TTT	p.C742F		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	742	Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		TACGTCTGAACACTGCAGCCG	0.587	NSCLC(182;635 2928 8995 38788)		NA											19	52					6.49762e-13	1.11225e-12	0.006122	1	0
ASGR1	432	broad.mit.edu	37	17	7077011	7077011	+	Silent	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:7077011C>G	uc002ges.3	-	9	1253	c.843G>C	c.(841-843)CTG>CTC	p.L281L	ASGR1_uc010clx.1_3'UTR	NM_001671	NP_001662	P07306	ASGR1_HUMAN	asialoglycoprotein receptor 1	281	Extracellular (Probable).				receptor-mediated endocytosis	integral to plasma membrane	asialoglycoprotein receptor activity|metal ion binding|sugar binding			breast(1)|central_nervous_system(1)	2						TGGCCTTGTCCAGCTCTGTCT	0.637			NA											7	46					0	0	0.00308	0	0
TP53	7157	broad.mit.edu	37	17	7577547	7577547	+	Missense_Mutation	SNP	C	C	A	rs121912656		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:7577547C>A	uc002gim.2	-	7	928	c.734G>T	c.(733-735)GGC>GTC	p.G245V	TP53_uc002gig.1_Missense_Mutation_p.G245V|TP53_uc002gih.2_Missense_Mutation_p.G245V|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G113V|TP53_uc010cng.1_Missense_Mutation_p.G113V|TP53_uc002gii.1_Missense_Mutation_p.G113V|TP53_uc010cnh.1_Missense_Mutation_p.G245V|TP53_uc010cni.1_Missense_Mutation_p.G245V|TP53_uc002gij.2_Missense_Mutation_p.G245V|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.G152V|TP53_uc002gio.2_Missense_Mutation_p.G113V	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	245	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		G -> N (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> A (in sporadic cancers; somatic mutation).|G -> V (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> R (in sporadic cancers; somatic mutation).|G -> E (in a sporadic cancer; somatic mutation).|G -> D (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> H (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|G -> L (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G245S(274)|p.G245D(93)|p.G245V(50)|p.G245C(47)|p.G245R(10)|p.G245A(8)|p.0?(7)|p.G245G(3)|p.G245fs*2(3)|p.G245N(2)|p.G245H(1)|p.G245L(1)|p.G244fs*17(1)|p.G245F(1)|p.G245E(1)|p.C242_M246>L(1)|p.C238_M246delCNSSCMGGM(1)|p.G245del(1)|p.C242fs*98(1)|p.G245fs*22(1)|p.M243fs*18(1)|p.S241_G245delSCMGG(1)|p.G245fs*14(1)|p.G245fs*17(1)|p.G245fs*16(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCGGTTCATGCCGCCCATGCA	0.582	Pancreas(47;798 1329 9957 10801)		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			8	43					0.00307968	0.00347099	0.00308	1	0
MYH13	8735	broad.mit.edu	37	17	10222310	10222310	+	Missense_Mutation	SNP	G	G	T	rs116855901	by1000genomes	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:10222310G>T	uc002gmk.1	-	27	3625	c.3535C>A	c.(3535-3537)CGC>AGC	p.R1179S		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1179	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						AGGTCCCTGCGCATTTTCTGG	0.582			NA											45	122					8.01111e-26	1.65806e-25	0.002522	1	0
MYH2	4620	broad.mit.edu	37	17	10432977	10432977	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:10432977C>A	uc010coi.2	-	24	3149	c.3021G>T	c.(3019-3021)GAG>GAT	p.E1007D	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1007D|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1007	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCTGGTGGGCCTCCTGGAGAG	0.483			NA											34	110					1.63038e-21	3.24649e-21	0.00361	1	0
MYH3	4621	broad.mit.edu	37	17	10543408	10543408	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:10543408C>T	uc002gmq.1	-	21	2664	c.2587G>A	c.(2587-2589)GAA>AAA	p.E863K		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	863	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TTGGCGAGTTCATCTTTGGTT	0.478			NA											21	68					0	0	0.002299	0	0
NF1	4763	broad.mit.edu	37	17	29528427	29528427	+	Splice_Site	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:29528427A>G	uc002hgg.2	+	11	1519	c.1186_splice	c.e11-2	p.I396_splice	NF1_uc002hge.1_Splice_Site_p.I396_splice|NF1_uc002hgf.1_Splice_Site_p.I396_splice|NF1_uc002hgh.2_Splice_Site_p.I396_splice|NF1_uc010csn.1_Splice_Site_p.I256_splice	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CTTTTTCTATAGATCTGCCTG	0.308			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			58	80					0	0	0.00361	0	0
SLFN12	55106	broad.mit.edu	37	17	33738771	33738771	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:33738771G>A	uc002hji.3	-	4	1700	c.1323C>T	c.(1321-1323)CTC>CTT	p.L441L	SLFN12_uc002hjj.3_Silent_p.L441L|SLFN12_uc010cts.2_Silent_p.L441L	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	441							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GAGCATCACAGAGGACTTTGT	0.463			NA											35	62					0	0	0.004289	0	0
PIGW	284098	broad.mit.edu	37	17	34893860	34893860	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:34893860G>A	uc002hmy.1	+	2	953	c.910G>A	c.(910-912)GAA>AAA	p.E304K	MYO19_uc010cuu.2_5'Flank|MYO19_uc010wcy.1_5'Flank|MYO19_uc010wcz.1_5'Flank|MYO19_uc010wda.1_5'Flank|MYO19_uc002hmx.2_5'Flank|PIGW_uc002hmz.1_Missense_Mutation_p.E304K	NM_178517	NP_848612	Q7Z7B1	PIGW_HUMAN	phosphatidylinositol glycan, class W	304					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	O-acyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGCCAACCGCGAAGGAATAAT	0.428			NA											8	77					0	0	0.00308	0	0
CDK12	51755	broad.mit.edu	37	17	37619304	37619304	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:37619304A>G	uc010cvv.2	+	1	1566	c.980A>G	c.(979-981)TAT>TGT	p.Y327C	CDK12_uc010wef.1_Missense_Mutation_p.Y327C|CDK12_uc002hrw.3_Missense_Mutation_p.Y327C	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	327					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						CCCAGTCCCTATGGTCGAAGG	0.562			NA								TCGA Ovarian(9;0.13)			17	40					0	0	0.007413	0	0
KRTAP3-3	85293	broad.mit.edu	37	17	39150184	39150184	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:39150184G>T	uc002hvr.1	-	1	202	c.166C>A	c.(166-168)CAC>AAC	p.H56N		NM_033185	NP_149441	Q9BYR6	KRA33_HUMAN	keratin associated protein 3-3	56	3 X 5 AA repeats of C-C-X(3).					keratin filament	structural molecule activity				0		Breast(137;0.00043)				TGAGGAATGTGGCAGGGTGGG	0.617			NA											27	46					3.6726e-16	6.94844e-16	0.003954	1	0
KRT37	8688	broad.mit.edu	37	17	39577234	39577234	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:39577234G>T	uc002hwp.1	-	7	1293	c.1246C>A	c.(1246-1248)CCC>ACC	p.P416T	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	416	Tail.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				GGATTGCAGGGGAGTCTGCAG	0.552			NA											15	31					0.000219431	0.000259743	0.00245	1	0
HAP1	9001	broad.mit.edu	37	17	39881192	39881192	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:39881192C>T	uc002hxm.1	-	12	1789	c.1777G>A	c.(1777-1779)GAG>AAG	p.E593K	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Missense_Mutation_p.E541K|HAP1_uc002hxo.1_Missense_Mutation_p.E524K|HAP1_uc002hxp.1_Missense_Mutation_p.E516K	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	593	Glu-rich.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			TCCACCTCCTCCCAGCCCTCG	0.627			NA											15	331					0	0	0.003163	0	0
JUP	3728	broad.mit.edu	37	17	39927916	39927916	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:39927916C>G	uc002hxq.2	-	2	468	c.191G>C	c.(190-192)GGG>GCG	p.G64A	JUP_uc010wfs.1_Missense_Mutation_p.G64A|JUP_uc002hxr.2_Missense_Mutation_p.G64A|JUP_uc002hxs.2_Missense_Mutation_p.G64A	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	64					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		GGGGGGCACCCCCTGGGTGTA	0.612	Colon(16;42 520 6044 17852 28530)		NA											16	39					0	0	0.004007	0	0
ITGA2B	3674	broad.mit.edu	37	17	42457145	42457145	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:42457145A>T	uc002igt.1	-	18	1822	c.1790T>A	c.(1789-1791)GTG>GAG	p.V597E	ITGA2B_uc002igu.1_Missense_Mutation_p.V78E	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	597	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	GAGGCTGAGCACAATGGGGCT	0.607			NA											16	87					0	0	0.004007	0	0
ABCA10	10349	broad.mit.edu	37	17	67197703	67197703	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:67197703C>A	uc010dfa.1	-	11	1992	c.1113G>T	c.(1111-1113)GAG>GAT	p.E371D	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'UTR|ABCA10_uc010dfc.1_Intron	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	371					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					CAGAGGAATGCTCAGGATTTA	0.358			NA											14	52					1.49906e-05	1.92454e-05	0.00245	1	0
SDK2	54549	broad.mit.edu	37	17	71419589	71419589	+	Silent	SNP	C	C	G	rs146912233	by1000genomes	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:71419589C>G	uc010dfm.2	-	14	1833	c.1833G>C	c.(1831-1833)ACG>ACC	p.T611T	SDK2_uc010dfn.2_Silent_p.T290T	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	611	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion	integral to membrane				ovary(2)	2						GCTTGGTCCACGTCAGGTTGA	0.607			NA											12	15					0	0	0.000978	0	0
SDK2	54549	broad.mit.edu	37	17	71431626	71431626	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:71431626G>T	uc010dfm.2	-	9	1158	c.1158C>A	c.(1156-1158)GCC>GCA	p.A386A	SDK2_uc010dfn.2_Silent_p.A65A	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	386	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion	integral to membrane				ovary(2)	2						GCACCTCGCCGGCTGCATTGC	0.632			NA											3	7					0.004672	0.00517176	0.004672	1	0
GGA3	23163	broad.mit.edu	37	17	73235895	73235895	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:73235895C>A	uc002jni.1	-	13	1567	c.1558G>T	c.(1558-1560)GAT>TAT	p.D520Y	GGA3_uc002jnj.1_Missense_Mutation_p.D487Y|GGA3_uc010wrw.1_Missense_Mutation_p.D398Y|GGA3_uc002jnk.1_Missense_Mutation_p.D448Y|GGA3_uc010wrx.1_Missense_Mutation_p.D398Y|GGA3_uc010wry.1_Missense_Mutation_p.D448Y	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3	520	Unstructured hinge.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			AGAAGCTGATCGAGGGCATCC	0.587			NA											13	33					9.05144e-12	1.51152e-11	0.001855	1	0
QRICH2	84074	broad.mit.edu	37	17	74301008	74301008	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:74301008C>A	uc002jrd.1	-	2	231	c.51G>T	c.(49-51)CGG>CGT	p.R17R	QRICH2_uc010dgw.1_5'UTR	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	17							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GTTCATCAACCCGCTGTAAAA	0.398			NA											45	107					2.40228e-13	4.14332e-13	0.003214	1	0
SEPT9	10801	broad.mit.edu	37	17	75398255	75398255	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr17:75398255A>G	uc002jts.3	+	3	317	c.191A>G	c.(190-192)CAG>CGG	p.Q64R	SEPT9_uc010wtk.1_Missense_Mutation_p.Q45R|SEPT9_uc002jtt.3_5'UTR|SEPT9_uc002jtu.3_Missense_Mutation_p.Q46R|SEPT9_uc002jtv.2_Missense_Mutation_p.Q57R|SEPT9_uc002jtw.2_5'UTR|SEPT9_uc002jtx.1_5'UTR|SEPT9_uc010wtl.1_5'Flank	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	64					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			CAGAAATTCCAGGACCTGGGC	0.652			NA											3	50					0	0	0.009096	0	0
LAMA1	284217	broad.mit.edu	37	18	7044769	7044769	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr18:7044769G>C	uc002knm.2	-	7	1022	c.928C>G	c.(928-930)CAG>GAG	p.Q310E	LAMA1_uc010wzj.1_Translation_Start_Site	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	310	Laminin EGF-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGGGCTGCTGATGGTACCCA	0.478			NA											17	116					0	0	0.00499	0	0
CEP192	55125	broad.mit.edu	37	18	13048964	13048964	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr18:13048964C>T	uc010xac.1	+	16	2254	c.2174C>T	c.(2173-2175)GCA>GTA	p.A725V	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.A250V|CEP192_uc002kru.2_RNA|CEP192_uc002krs.1_Missense_Mutation_p.A466V	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	725										ovary(4)|pancreas(1)	5						ATTGCAGAGGCATCAGTTAAT	0.413			NA											10	108					0	0	0.006214	0	0
POTEC	388468	broad.mit.edu	37	18	14542862	14542862	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr18:14542862C>A	uc010dln.2	-	1	738	c.284G>T	c.(283-285)AGG>ATG	p.R95M	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	95										skin(3)	3						CATCTTGCTCCTGAGCGTCTT	0.617			NA											8	261					1.12685e-05	1.46598e-05	0.004482	1	0
GATA6	2627	broad.mit.edu	37	18	19762969	19762969	+	Missense_Mutation	SNP	A	A	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr18:19762969A>C	uc002ktt.1	+	6	1850	c.1585A>C	c.(1585-1587)AAT>CAT	p.N529H	GATA6_uc002ktu.1_Missense_Mutation_p.N529H	NM_005257	NP_005248	Q92908	GATA6_HUMAN	GATA binding protein 6	529					blood coagulation|cardiac vascular smooth muscle cell differentiation|cellular response to hypoxia|intestinal epithelial cell differentiation|male gonad development|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor-beta1 production|negative regulation of transforming growth factor-beta2 production|outflow tract septum morphogenesis|positive regulation of angiogenesis|positive regulation of cell cycle arrest|positive regulation of transcription from RNA polymerase II promoter|response to drug|response to growth factor stimulus		protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(3)	3	all_cancers(21;0.00271)|all_epithelial(16;7.31e-05)|Ovarian(2;0.116)|Lung NSC(20;0.123)|all_lung(20;0.246)		STAD - Stomach adenocarcinoma(5;0.106)			TTGCAGCAAAAATACTTCCCC	0.373	Colon(8;48 282 46199 46856)|Melanoma(177;170 2725 12489 26999)		NA											15	54					0	0	0.008871	0	0
DTNA	1837	broad.mit.edu	37	18	32462098	32462098	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr18:32462098G>T	uc010dmn.1	+	20	2148	c.2147G>T	c.(2146-2148)CGG>CTG	p.R716L	DTNA_uc002kxw.2_Missense_Mutation_p.R659L|DTNA_uc010dmj.2_Missense_Mutation_p.R656L|DTNA_uc002kxz.2_Missense_Mutation_p.R663L|DTNA_uc002kxy.2_Missense_Mutation_p.R656L|DTNA_uc010xby.1_Missense_Mutation_p.R406L|DTNA_uc010xbz.1_Missense_Mutation_p.R425L|DTNA_uc010xca.1_Missense_Mutation_p.R368L|DTNA_uc002kye.2_Missense_Mutation_p.R364L	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	716					neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						GACTCTGTCCGGCAGCTGGAG	0.488			NA											8	33					1.12685e-05	1.46598e-05	0.004482	1	0
SETBP1	26040	broad.mit.edu	37	18	42531871	42531871	+	Missense_Mutation	SNP	G	G	A	rs140028039		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr18:42531871G>A	uc010dni.2	+	4	2862	c.2566G>A	c.(2566-2568)GTG>ATG	p.V856M		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	856						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GCTGTCCCCTGTGAGCGAGTC	0.572			NA							Schinzel-Giedion_syndrome				14	15					0	0	0.00245	0	0
WDR7	23335	broad.mit.edu	37	18	54361959	54361959	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr18:54361959C>T	uc002lgk.1	+	10	1287	c.1076C>T	c.(1075-1077)TCA>TTA	p.S359L	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.S359L	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	359	WD 4.									ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TGGAACATATCAGACACAGCT	0.328			NA											7	27					0	0	0.004482	0	0
PTBP1	5725	broad.mit.edu	37	19	810798	810798	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:810798G>C	uc002lpr.2	+	14	1674	c.1568G>C	c.(1567-1569)CGG>CCG	p.R523P	PTBP1_uc002lpp.2_Missense_Mutation_p.R549P|PTBP1_uc002lpq.2_Missense_Mutation_p.R542P|PTBP1_uc002lps.2_Missense_Mutation_p.R189P|PTBP1_uc002lpt.2_RNA|PTBP1_uc002lpu.1_Missense_Mutation_p.R519P|hsa-mir-3187|MI0014231_5'Flank	NM_031991	NP_114368	P26599	PTBP1_HUMAN	polypyrimidine tract-binding protein 1 isoform	523	RRM 4.				negative regulation of muscle cell differentiation|nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	mRNA binding|nucleotide binding|poly-pyrimidine tract binding|protein binding			kidney(1)|skin(1)	2		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCACCTGCGGGTCTCCTTC	0.612			NA											12	72					0	0	0.00245	0	0
C19orf59	199675	broad.mit.edu	37	19	7742605	7742605	+	Silent	SNP	G	G	T	rs142098368	by1000genomes	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:7742605G>T	uc002mhh.1	+	2	202	c.177G>T	c.(175-177)ACG>ACT	p.T59T		NM_174918	NP_777578	Q8IX19	MCEM1_HUMAN	mast cell-expressed membrane protein 1	59	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						CACGACCCACGAGCCAAGGTG	0.602			NA									OREG0025208	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	26					0.00116845	0.00134126	0.001168	1	0
ZNF699	374879	broad.mit.edu	37	19	9408097	9408097	+	Silent	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:9408097T>C	uc002mlc.1	-	4	345	c.345A>G	c.(343-345)GAA>GAG	p.E115E		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	115					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGATATTTTTTCTCCACAAA	0.348			NA											16	44					0	0	0.004007	0	0
ZNF791	163049	broad.mit.edu	37	19	12740052	12740052	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:12740052A>G	uc002mua.2	+	4	1871	c.1709A>G	c.(1708-1710)CAT>CGT	p.H570R	ZNF791_uc010xml.1_Missense_Mutation_p.H538R|ZNF791_uc010dyu.1_Missense_Mutation_p.H461R|ZNF791_uc010xmm.1_Missense_Mutation_p.H461R	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	570	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTAAAAAAACATATGAGAATG	0.333			NA											18	42					0	0	0.010504	0	0
CD97	976	broad.mit.edu	37	19	14507186	14507186	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:14507186T>C	uc002myl.2	+	5	502	c.379T>C	c.(379-381)TGT>CGT	p.C127R	CD97_uc002mym.2_Missense_Mutation_p.C127R|CD97_uc002myn.2_Intron	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	127	Extracellular (Potential).|EGF-like 3; calcium-binding (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						CCCAAGGCTCTGTAAAAGCTA	0.572			NA											8	126					0	0	0.004482	0	0
EMR2	30817	broad.mit.edu	37	19	14876179	14876179	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:14876179C>A	uc002mzp.1	-	10	1315	c.859G>T	c.(859-861)GAC>TAC	p.D287Y	EMR2_uc010dzs.1_5'UTR|EMR2_uc010xnw.1_Missense_Mutation_p.D287Y|EMR2_uc002mzo.1_Missense_Mutation_p.D287Y|EMR2_uc002mzq.1_Missense_Mutation_p.D238Y|EMR2_uc002mzr.1_Missense_Mutation_p.D238Y|EMR2_uc002mzs.1_Missense_Mutation_p.D145Y|EMR2_uc002mzt.1_Missense_Mutation_p.D194Y|EMR2_uc002mzu.1_Missense_Mutation_p.D194Y|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	287	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						CTGCCCAGGTCCTGGACTTTG	0.592			NA											11	101					1.49906e-05	1.92454e-05	0.00245	1	0
EMR2	30817	broad.mit.edu	37	19	14877889	14877889	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:14877889A>G	uc002mzp.1	-	6	844	c.388T>C	c.(388-390)TGT>CGT	p.C130R	EMR2_uc010dzs.1_5'Flank|EMR2_uc010xnw.1_Missense_Mutation_p.C130R|EMR2_uc002mzo.1_Missense_Mutation_p.C130R|EMR2_uc002mzq.1_Missense_Mutation_p.C130R|EMR2_uc002mzr.1_Missense_Mutation_p.C130R|EMR2_uc002mzs.1_Intron|EMR2_uc002mzt.1_Intron|EMR2_uc002mzu.1_Intron|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	130	Extracellular (Potential).|EGF-like 3; calcium-binding.				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						TAGCTTTTACAGAGCCTTGGG	0.592			NA											7	12					0	0	0.001984	0	0
OR7A10	390892	broad.mit.edu	37	19	14952304	14952304	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:14952304G>T	uc002mzx.1	-	1	386	c.386C>A	c.(385-387)CCT>CAT	p.P129H		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					GTAGTGCAGAGGGTGACAGAT	0.468			NA											9	58					2.17888e-05	2.75588e-05	0.006214	1	0
CYP4F2	8529	broad.mit.edu	37	19	15989681	15989681	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:15989681C>T	uc002nbs.1	-	13	1513	c.1463G>A	c.(1462-1464)CGC>CAC	p.R488H	CYP4F2_uc010xot.1_Missense_Mutation_p.R339H	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	488					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GACGCGGAAGCGCAGCAGCGT	0.677			NA											6	50					0	0	0.00308	0	0
FCHO1	23149	broad.mit.edu	37	19	17892047	17892047	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:17892047G>T	uc010ebb.2	+	20	1824	c.1635G>T	c.(1633-1635)ATG>ATT	p.M545I	FCHO1_uc002nhg.3_Missense_Mutation_p.M545I|FCHO1_uc002nhh.2_Missense_Mutation_p.M545I|FCHO1_uc010xpw.1_Missense_Mutation_p.M495I|FCHO1_uc002nhi.2_Missense_Mutation_p.M1I|FCHO1_uc002nhj.2_Intron	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	545	Pro-rich.									breast(1)	1						TAGACCTGATGCCTGCACCTG	0.627			NA											11	122					1.08611e-07	1.55843e-07	0.000978	1	0
SFRS14	10147	broad.mit.edu	37	19	19136604	19136604	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:19136604C>G	uc002nkx.2	-	3	699	c.553G>C	c.(553-555)GAG>CAG	p.E185Q	SFRS14_uc002nkz.1_Missense_Mutation_p.E199Q|SFRS14_uc002nla.1_Missense_Mutation_p.E185Q|SFRS14_uc002nlb.2_Missense_Mutation_p.E185Q|SFRS14_uc010xqk.1_Intron	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	185					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CTCTCCTTCTCCAAACACTCT	0.517			NA											5	46					0	0	0.001168	0	0
ZNF430	80264	broad.mit.edu	37	19	21216307	21216307	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:21216307G>T	uc002npj.2	+	3	252	c.142G>T	c.(142-144)GAG>TAG	p.E48*	ZNF430_uc002npk.2_Nonsense_Mutation_p.E48*	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	48	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						TTCTCTGGAGGAGTGGCAATG	0.448			NA											34	96					1.45844e-13	2.5411e-13	0.002836	1	0
ZNF208	7757	broad.mit.edu	37	19	22154080	22154080	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:22154080G>T	uc002nqp.2	-	6	3521	c.3372C>A	c.(3370-3372)CCC>CCA	p.P1124P	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CACATTTGTAGGGTTTCTCTC	0.373			NA											13	48					7.03913e-09	1.06838e-08	0.001368	1	0
ZNF208	7757	broad.mit.edu	37	19	22154113	22154114	+	Missense_Mutation	DNP	AG	AG	TA			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	AG	AG	-	-	AG	AG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:22154113_22154114AG>TA	uc002nqp.2	-	6	3487_3488	c.3338_3339CT>TA	c.(3337-3339)ACT>ATA	p.T1113I	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CCTTATGTTTAGTGAGGATTGA	0.386			NA											10	56					0	0	0.004672	0	0
ZNF98	148198	broad.mit.edu	37	19	22574517	22574517	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:22574517G>T	uc002nqt.2	-	4	1642	c.1520C>A	c.(1519-1521)ACA>AAA	p.T507K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	507	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				CATCTTATGTGTAGTAAGGTG	0.383			NA											24	62					7.07758e-08	1.02851e-07	0.004656	1	0
ZNF536	9745	broad.mit.edu	37	19	31038967	31038967	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:31038967G>T	uc002nsu.1	+	4	2579	c.2441G>T	c.(2440-2442)GGG>GTG	p.G814V	ZNF536_uc010edd.1_Missense_Mutation_p.G814V	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	814					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCGCTGTCTGGGCAACCCCCA	0.572			NA											35	110					6.53348e-20	1.28229e-19	0.003755	1	0
DMKN	93099	broad.mit.edu	37	19	36003562	36003562	+	Missense_Mutation	SNP	A	A	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:36003562A>C	uc002nzm.3	-	2	740	c.557T>G	c.(556-558)ATG>AGG	p.M186R	DMKN_uc002nzj.2_5'Flank|DMKN_uc002nzk.3_5'Flank|DMKN_uc002nzl.3_5'Flank|DMKN_uc002nzo.3_Missense_Mutation_p.M186R|DMKN_uc002nzn.3_Missense_Mutation_p.M186R|DMKN_uc002nzw.2_5'Flank|DMKN_uc002nzr.2_5'Flank|DMKN_uc002nzp.2_5'Flank|DMKN_uc002nzq.2_5'Flank|DMKN_uc002nzt.2_5'Flank|DMKN_uc002nzs.2_5'Flank|DMKN_uc002nzu.2_5'Flank|DMKN_uc002nzv.2_5'Flank|DMKN_uc010xsv.1_5'Flank|DMKN_uc010xsw.1_5'Flank|DMKN_uc002nzx.3_5'Flank|DMKN_uc002nzy.3_5'Flank|DMKN_uc002nzz.2_5'Flank|DMKN_uc002oac.3_Missense_Mutation_p.M186R|DMKN_uc010eeb.2_Missense_Mutation_p.M186R|DMKN_uc002oaa.3_Missense_Mutation_p.M186R|DMKN_uc002oab.3_Missense_Mutation_p.M186R	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	186	Gly-rich.					extracellular region				large_intestine(1)|ovary(1)|skin(1)	3	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CTGAGGATTCATTCCAAAGCT	0.607			NA											8	69					0	0	0.004482	0	0
ZNF567	163081	broad.mit.edu	37	19	37211274	37211274	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:37211274G>T	uc010xtl.1	+	6	1870	c.1648G>T	c.(1648-1650)GTA>TTA	p.V550L	ZNF567_uc002oeo.1_Missense_Mutation_p.V550L|ZNF567_uc010xtk.1_Missense_Mutation_p.V550L|ZNF567_uc002oep.3_Missense_Mutation_p.V519L|ZNF567_uc002oeq.1_Missense_Mutation_p.V519L	NM_152603	NP_689816	Q8N184	ZN567_HUMAN	zinc finger protein 567	550	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AACCCTCACTGTACATCAGAA	0.408			NA											26	123					6.12954e-19	1.18597e-18	0.004656	1	0
MAP4K1	11184	broad.mit.edu	37	19	39087686	39087686	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:39087686G>C	uc002oix.1	-	25	2037	c.1929C>G	c.(1927-1929)TTC>TTG	p.F643L	MAP4K1_uc002oiw.1_Missense_Mutation_p.F230L|MAP4K1_uc002oiy.1_Missense_Mutation_p.F643L	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	643	CNH.				activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GGACAAGCAGGAATTTGTTCA	0.592			NA											4	81					0	0	0.009096	0	0
PLD3	23646	broad.mit.edu	37	19	40872767	40872767	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:40872767G>A	uc002onm.3	+	5	588	c.190G>A	c.(190-192)GAC>AAC	p.D64N	PLD3_uc002onj.3_Missense_Mutation_p.D64N|PLD3_uc002onk.3_Missense_Mutation_p.D64N|PLD3_uc002onl.3_Missense_Mutation_p.D64N|PLD3_uc002onn.2_Missense_Mutation_p.D64N|PLD3_uc002ono.2_Missense_Mutation_p.R93Q	NM_001031696	NP_001026866	Q8IV08	PLD3_HUMAN	phospholipase D3	64	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum membrane|integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity|protein binding			skin(2)|ovary(1)	3			Lung(22;0.000636)|LUSC - Lung squamous cell carcinoma(20;0.00248)			GGAATACGGCGACTTGCATCT	0.627			NA											15	118					0	0	0.004007	0	0
ERCC1	2067	broad.mit.edu	37	19	45923668	45923668	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:45923668C>T	uc002pbs.1	-	4	485	c.339G>A	c.(337-339)CTG>CTA	p.L113L	ERCC1_uc002pbt.1_Silent_p.L113L|ERCC1_uc002pbu.1_Silent_p.L41L|ERCC1_uc002pbv.2_Silent_p.L113L	NM_001983	NP_001974	P07992	ERCC1_HUMAN	excision repair cross-complementing 1 isofrom 2	113					mitotic recombination|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|response to oxidative stress|transcription-coupled nucleotide-excision repair	cytoplasm|nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair complex	damaged DNA binding|endonuclease activity|protein C-terminus binding|protein domain specific binding|single-stranded DNA binding			ovary(2)	2		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0247)		GCACGAACTTCAGTACGGGAT	0.517			NA						NER					6	8					0	0	0.001168	0	0
IGFL3	388555	broad.mit.edu	37	19	46627241	46627241	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:46627241G>T	uc002pea.1	-	3	277	c.252C>A	c.(250-252)CCC>CCA	p.P84P		NM_207393	NP_997276	Q6UXB1	IGFL3_HUMAN	IGF-like family member 3 precursor	84						extracellular region	protein binding				0		Ovarian(192;0.0175)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00473)|GBM - Glioblastoma multiforme(486;0.0149)|Epithelial(262;0.239)		CAAAAGACTCGGGACAGCAGA	0.537			NA											69	109					2.26907e-38	4.8735e-38	0.00361	1	0
PRR12	57479	broad.mit.edu	37	19	50099610	50099610	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:50099610G>A	uc002poo.3	+	4	2018	c.2018G>A	c.(2017-2019)GGA>GAA	p.G673E		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	416	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GCCTCTAAGGGACTTGGGGGG	0.672			NA											3	10					0	0	0.009096	0	0
C19orf41	126123	broad.mit.edu	37	19	50666245	50666245	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:50666245C>A	uc002prp.1	-	1	294	c.207G>T	c.(205-207)GCG>GCT	p.A69A		NM_152358	NP_689571	Q6UXV1	IZUM2_HUMAN	hypothetical protein LOC126123 precursor	69	Extracellular (Potential).					integral to membrane					0		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00364)|OV - Ovarian serous cystadenocarcinoma(262;0.0052)		ACACGTTCAGCGCGTAGTCCC	0.682			NA											20	32					1.64293e-13	2.85528e-13	0.00333	1	0
GPR32	2854	broad.mit.edu	37	19	51274755	51274755	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:51274755G>T	uc010ycf.1	+	1	898	c.898G>T	c.(898-900)GCT>TCT	p.A300S		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	300	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CATCCTCCAGGCTAGCTTTGC	0.522	Esophageal Squamous(113;152 1581 5732 15840 44398)		NA											41	62					2.95478e-19	5.74961e-19	0.00874	1	0
ZNF766	90321	broad.mit.edu	37	19	52793794	52793794	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:52793794G>A	uc002pyr.1	+	4	793	c.750G>A	c.(748-750)AAG>AAA	p.K250K	ZNF766_uc002pys.1_3'UTR|ZNF766_uc002pyt.1_Silent_p.K265K	NM_001010851	NP_001010851	Q5HY98	ZN766_HUMAN	zinc finger protein 766	250	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00236)|OV - Ovarian serous cystadenocarcinoma(262;0.00871)		AGTGTGGCAAGCTCTTCAATC	0.443			NA											13	18					0	0	0.001368	0	0
TSEN34	79042	broad.mit.edu	37	19	54695979	54695979	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:54695979C>T	uc002qdu.2	+	4	609	c.500C>T	c.(499-501)TCC>TTC	p.S167F	MBOAT7_uc002qdq.2_5'Flank|MBOAT7_uc002qdr.2_5'Flank|MBOAT7_uc002qds.2_5'Flank|MBOAT7_uc010yen.1_5'Flank|MBOAT7_uc002qdt.3_5'Flank|TSEN34_uc010yeo.1_Missense_Mutation_p.S167F|TSEN34_uc002qdv.2_Missense_Mutation_p.S167F|TSEN34_uc002qdw.2_Missense_Mutation_p.S167F	NM_024075	NP_076980	Q9BSV6	SEN34_HUMAN	tRNA-intron endonuclease 34	167					mRNA processing|tRNA-type intron splice site recognition and cleavage	nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity				0	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCCTCGTCTTCCCAAGCAGGA	0.602	Esophageal Squamous(37;841 964 4869 42824)		NA											5	77					0	0	0.001168	0	0
LILRB3	11025	broad.mit.edu	37	19	54724968	54724968	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:54724968G>C	uc002qef.1	-	5	1053	c.942C>G	c.(940-942)AAC>AAG	p.N314K	LILRB3_uc002qee.1_Missense_Mutation_p.N314K|LILRB3_uc002qeh.1_Missense_Mutation_p.N314K|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Missense_Mutation_p.N314K|LILRA6_uc002qek.1_Intron|LILRB3_uc010erh.1_Missense_Mutation_p.N314K|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Intron|LILRA6_uc002qem.1_Intron|LILRB3_uc002qen.1_Intron|LILRB3_uc002qeo.1_Intron|LILRB3_uc002qep.1_Missense_Mutation_p.N314K|LILRB3_uc002qeq.1_Intron|LILRB3_uc002qer.1_Intron|LILRB3_uc002qes.1_Missense_Mutation_p.N314K|LILRA6_uc010yep.1_Intron|LILRA6_uc010yeq.1_Intron	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	314	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCATCAGGATGTTCAGGGGGT	0.682			NA											13	12					0	0	0.007413	0	0
NLRP7	199713	broad.mit.edu	37	19	55450278	55450278	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:55450278C>A	uc002qih.3	-	4	1985	c.1909G>T	c.(1909-1911)GAA>TAA	p.E637*	NLRP7_uc002qig.3_Nonsense_Mutation_p.E637*|NLRP7_uc002qii.3_Nonsense_Mutation_p.E637*|NLRP7_uc010esk.2_Nonsense_Mutation_p.E637*|NLRP7_uc010esl.2_Nonsense_Mutation_p.E665*	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	637	LRR 1.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		ATGTCCAGTTCAAAATCCATG	0.468			NA											22	43					1.9806e-07	2.82411e-07	0.002299	1	0
NLRP11	204801	broad.mit.edu	37	19	56313001	56313001	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:56313001A>T	uc010ygf.1	-	7	2819	c.2108T>A	c.(2107-2109)CTA>CAA	p.L703Q	NLRP11_uc002qlz.2_Missense_Mutation_p.L550Q|NLRP11_uc002qmb.2_Missense_Mutation_p.L604Q|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	703							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AAACATATTTAGGGAAATGGA	0.463			NA											24	49					0	0	0.004656	0	0
NLRP5	126206	broad.mit.edu	37	19	56565158	56565158	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr19:56565158G>C	uc002qmj.2	+	13	3283	c.3283G>C	c.(3283-3285)GTT>CTT	p.V1095L	NLRP5_uc002qmi.2_Missense_Mutation_p.V1076L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1095						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AAAGAACAGTGTTCTGGCGAG	0.617			NA											13	39					0	0	0.004007	0	0
MYT1L	23040	broad.mit.edu	37	2	1890380	1890380	+	Splice_Site	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:1890380C>A	uc002qxe.2	-	18	3470	c.2643_splice	c.e18-1	p.T881_splice	MYT1L_uc002qxd.2_Splice_Site_p.T879_splice|MYT1L_uc010ewl.1_Splice_Site	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like						cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GCCAGACAGACTGTAAGACAG	0.448			NA											6	36					5.9392e-07	8.31245e-07	0.001168	1	0
KCNF1	3754	broad.mit.edu	37	2	11053045	11053046	+	Missense_Mutation	DNP	CA	CA	AG			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:11053045_11053046CA>AG	uc002rax.2	+	1	983_984	c.493_494CA>AG	c.(493-495)CAG>AGG	p.Q165R		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	165	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		GCGCCGCTGCCAGAAGTGCGTC	0.698			NA											5	40					0	0	0.004672	0	0
C2orf39	92749	broad.mit.edu	37	2	26676259	26676259	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:26676259G>T	uc002rhg.2	+	14	1835	c.1761G>T	c.(1759-1761)GAG>GAT	p.E587D		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	587	Glu-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGAATTggagctggcagagc	0.358			NA											20	81					1.37878e-21	2.75353e-21	0.00333	1	0
OTOF	9381	broad.mit.edu	37	2	26690031	26690031	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:26690031C>A	uc002rhk.2	-	35	4425	c.4298G>T	c.(4297-4299)CGG>CTG	p.R1433L	OTOF_uc010yla.1_Missense_Mutation_p.R163L|OTOF_uc002rhh.2_Missense_Mutation_p.R666L|OTOF_uc002rhi.2_Missense_Mutation_p.R743L|OTOF_uc002rhj.2_Missense_Mutation_p.R666L	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1433	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTCTTGCCCCGAAGCAAGTT	0.602	GBM(102;732 1451 20652 24062 31372)		NA											14	57					3.27435e-08	4.81979e-08	0.00245	1	0
OTOF	9381	broad.mit.edu	37	2	26739403	26739403	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:26739403C>A	uc002rhk.2	-	5	519	c.392G>T	c.(391-393)GGG>GTG	p.G131V	OTOF_uc010ylb.1_RNA	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	131	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGGAAGTCCCCATCGTCCCA	0.647	GBM(102;732 1451 20652 24062 31372)		NA											20	87					3.73194e-20	7.37893e-20	0.010504	1	0
LTBP1	4052	broad.mit.edu	37	2	33540297	33540297	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:33540297C>A	uc002ros.2	+	24	3694	c.3694C>A	c.(3694-3696)CAG>AAG	p.Q1232K	LTBP1_uc002rot.2_Missense_Mutation_p.Q906K|LTBP1_uc002rou.2_Missense_Mutation_p.Q905K|LTBP1_uc002rov.2_Missense_Mutation_p.Q852K|LTBP1_uc010ymz.1_Missense_Mutation_p.Q905K|LTBP1_uc010yna.1_Missense_Mutation_p.Q852K|LTBP1_uc010ynb.1_Missense_Mutation_p.Q171K	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1231	EGF-like 12; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TGTCTGCCAGCAGGGTTTCTC	0.423			NA											12	60					1.5842e-08	2.38854e-08	0.001855	1	0
SFRS7	6432	broad.mit.edu	37	2	38975201	38975201	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:38975201G>A	uc002rqz.2	-	5	798	c.560C>T	c.(559-561)TCG>TTG	p.S187L	SFRS7_uc002rra.2_RNA|SFRS7_uc010ynp.1_Missense_Mutation_p.S187L	NM_001031684	NP_001026854	Q16629	SRSF7_HUMAN	splicing factor, arginine/serine-rich 7	187	6 X 8 AA repeats of R-R-S-R-S-X-S-X.|Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding|zinc ion binding				0		all_hematologic(82;0.248)				GAAATACCTCGATCCTTTTAT	0.388			NA											10	49					0	0	0.008291	0	0
ABCG8	64241	broad.mit.edu	37	2	44102542	44102542	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:44102542C>G	uc002rtq.2	+	11	1836	c.1746C>G	c.(1744-1746)AGC>AGG	p.S582R	ABCG8_uc010yoa.1_Missense_Mutation_p.S581R	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	582	Helical; Name=5; (Potential).|ABC transmembrane type-2.				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				ACTTGAGCAGCCTGTGGACAG	0.577			NA											8	43					0	0	0.00308	0	0
PSME4	23198	broad.mit.edu	37	2	54133777	54133777	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:54133777C>T	uc002rxp.2	-	26	2957	c.2901G>A	c.(2899-2901)ATG>ATA	p.M967I	PSME4_uc010yop.1_Missense_Mutation_p.M853I|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.M342I|PSME4_uc010fbv.1_Missense_Mutation_p.M111I	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	967					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GATCTCTGATCATATCTTGAT	0.353			NA											20	88					0	0	0.001882	0	0
SPTBN1	6711	broad.mit.edu	37	2	54872392	54872392	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:54872392G>T	uc002rxu.2	+	21	4545	c.4296G>T	c.(4294-4296)CGG>CGT	p.R1432R	SPTBN1_uc002rxx.2_Silent_p.R1419R	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1432	Spectrin 11.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			TGGAAGTGCGGAAGAAGGAGA	0.562			NA											15	72					2.31682e-05	2.91954e-05	0.003163	1	0
CYP26B1	56603	broad.mit.edu	37	2	72362450	72362450	+	Silent	SNP	G	G	C	rs143775993		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:72362450G>C	uc002sih.1	-	3	528	c.528C>G	c.(526-528)CCC>CCG	p.P176P	CYP26B1_uc010yra.1_Silent_p.P159P|CYP26B1_uc010yrb.1_Silent_p.P101P	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	176					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						TGATGGCCTCGGGGTGGCTGC	0.627			NA											12	79					0	0	0.000978	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518123	84518123	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:84518123T>A	uc010ffz.1	+	1	318	c.181T>A	c.(181-183)TTT>ATT	p.F61I		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						GTGCACGGGTTTTATATTCCA	0.488			NA											27	155					0	0	0.00632	0	0
NMS	129521	broad.mit.edu	37	2	101097619	101097619	+	Missense_Mutation	SNP	T	T	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:101097619T>G	uc002tan.1	+	8	411	c.404T>G	c.(403-405)TTC>TGC	p.F135C		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	135					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						CGACCCTTTTTCCTTTTCAGG	0.438			NA											34	114					0	0	0.003271	0	0
SLC9A4	389015	broad.mit.edu	37	2	103095489	103095489	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:103095489C>G	uc002tbz.3	+	2	905	c.448C>G	c.(448-450)CCC>GCC	p.P150A		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	150	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GCCCACCCGGCCCTTCTTTGA	0.592			NA											7	42					0	0	0.00308	0	0
SULT1C2	6819	broad.mit.edu	37	2	108910141	108910141	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:108910141C>A	uc002tdy.2	+	2	471	c.18C>A	c.(16-18)GAC>GAA	p.D6E	SULT1C2_uc010ywp.1_5'UTR|SULT1C2_uc002tdx.2_Missense_Mutation_p.D6E|SULT1C2_uc010ywq.1_Missense_Mutation_p.D6E	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	6					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						TGACCTCAGACCTGGGGAAAC	0.443			NA											14	54					2.32078e-09	3.60249e-09	0.003163	1	0
IL1F9	56300	broad.mit.edu	37	2	113737597	113737597	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:113737597G>T	uc002tio.1	+	4	241	c.172G>T	c.(172-174)GTT>TTT	p.V58F	IL1F9_uc010fkr.1_Missense_Mutation_p.V23F	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	58					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						CACTGTTGCTGTTATCACATG	0.413	Esophageal Squamous(44;715 981 6239 42838 46707)		NA											5	92					1.06961e-07	1.54449e-07	0.00308	1	0
MARCO	8685	broad.mit.edu	37	2	119735461	119735461	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:119735461C>G	uc002tln.1	+	8	848	c.716C>G	c.(715-717)CCA>CGA	p.P239R	MARCO_uc010yyf.1_Missense_Mutation_p.P161R	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	239	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						CTCATTGGCCCAAAAGGGGAA	0.592	GBM(8;18 374 7467 11269 32796)		NA											5	17					0	0	0.001168	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125175026	125175026	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:125175026G>A	uc002tno.2	+	4	752	c.388G>A	c.(388-390)GCA>ACA	p.A130T	CNTNAP5_uc010flu.2_Missense_Mutation_p.A130T	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	130	F5/8 type C.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GCAGACCTTTGCAGGAAACAT	0.488			NA											7	24					0	0	0.00308	0	0
GPR148	344561	broad.mit.edu	37	2	131487397	131487397	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:131487397C>G	uc002trv.1	+	1	675	c.673C>G	c.(673-675)CTG>GTG	p.L225V		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	225	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					CACCTCCATTCTGTGCGTTCT	0.562			NA											10	87					0	0	0.001855	0	0
FAM123C	205147	broad.mit.edu	37	2	131520863	131520863	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:131520863C>A	uc002trw.2	+	2	1408	c.1218C>A	c.(1216-1218)GGC>GGA	p.G406G	FAM123C_uc010fmv.2_Silent_p.G406G|FAM123C_uc010fms.1_Silent_p.G406G|FAM123C_uc010fmt.1_Silent_p.G406G|FAM123C_uc010fmu.1_Silent_p.G406G	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	406										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		AGAGCCCAGGCACTCCTGCCG	0.622			NA											7	49					0.00198382	0.0022658	0.001984	1	0
FAM123C	205147	broad.mit.edu	37	2	131521085	131521085	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:131521085C>A	uc002trw.2	+	2	1630	c.1440C>A	c.(1438-1440)AGC>AGA	p.S480R	FAM123C_uc010fmv.2_Missense_Mutation_p.S480R|FAM123C_uc010fms.1_Missense_Mutation_p.S480R|FAM123C_uc010fmt.1_Missense_Mutation_p.S480R|FAM123C_uc010fmu.1_Missense_Mutation_p.S480R	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	480										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		ACCTGCTCAGCCAGGGCTTCC	0.652			NA											3	28					0.00909568	0.00997167	0.009096	1	0
POTEE	445582	broad.mit.edu	37	2	132021450	132021450	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:132021450G>C	uc002tsn.2	+	15	2474	c.2422G>C	c.(2422-2424)GCC>CCC	p.A808P	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.A408P|POTEE_uc002tsl.2_Missense_Mutation_p.A390P|POTEE_uc010fmy.1_Missense_Mutation_p.A272P	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	808	Actin-like.						ATP binding				0						GCTGACCGAGGCCCCCCTGAA	0.597			NA											33	136					0	0	0.005524	0	0
NCKAP5	344148	broad.mit.edu	37	2	133489455	133489455	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:133489455G>T	uc002ttp.2	-	17	5672	c.5298C>A	c.(5296-5298)GCC>GCA	p.A1766A	NCKAP5_uc002ttq.2_Silent_p.A447A	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1766							protein binding				0						CAAGGGTTTGGGCTCTCATGG	0.592			NA											8	81					0.000157383	0.000188254	0.00308	1	0
YSK4	80122	broad.mit.edu	37	2	135745227	135745227	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:135745227G>T	uc002tue.1	-	7	1246	c.1215C>A	c.(1213-1215)AGC>AGA	p.S405R	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.S292R|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.S133R|YSK4_uc002tui.3_Missense_Mutation_p.S422R	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	405							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CTTCATCCTGGCTTGGAGTTA	0.348			NA											18	88					5.03518e-11	8.14936e-11	0.007413	1	0
R3HDM1	23518	broad.mit.edu	37	2	136393668	136393668	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:136393668G>T	uc002tuo.2	+	11	1188	c.818G>T	c.(817-819)CGT>CTT	p.R273L	R3HDM1_uc010fni.2_Missense_Mutation_p.R271L|R3HDM1_uc002tup.2_Missense_Mutation_p.R217L|R3HDM1_uc010zbh.1_Missense_Mutation_p.R105L	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	273							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		ATGAGAATACGTTTGAAAGAT	0.353			NA											31	84					1.39806e-14	2.51945e-14	0.008361	1	0
LCT	3938	broad.mit.edu	37	2	136569890	136569890	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:136569890C>A	uc002tuu.1	-	7	2355	c.2344G>T	c.(2344-2346)GTG>TTG	p.V782L		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	782	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CCCTTGAGCACCTCATTGATA	0.408			NA											8	118					2.17888e-05	2.75588e-05	0.006214	1	0
LRP1B	53353	broad.mit.edu	37	2	141055532	141055532	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:141055532G>C	uc002tvj.1	-	84	13784	c.12812C>G	c.(12811-12813)CCC>CGC	p.P4271R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4271	Extracellular (Potential).|EGF-like 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCTGCAGGTGGGTCTCCCTAT	0.343	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			11	137					0	0	0.000978	0	0
KYNU	8942	broad.mit.edu	37	2	143718199	143718199	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:143718199G>C	uc002tvl.2	+	8	719	c.589G>C	c.(589-591)GAA>CAA	p.E197Q	KYNU_uc002tvk.2_Missense_Mutation_p.E197Q|KYNU_uc010fnm.2_Missense_Mutation_p.E197Q	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	197					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TTAGGGGGAAGAAACCTTAAG	0.383			NA											13	55					0	0	0.003163	0	0
PKP4	8502	broad.mit.edu	37	2	159537118	159537118	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:159537118G>A	uc002tzv.2	+	22	3768	c.3508G>A	c.(3508-3510)GAC>AAC	p.D1170N	PKP4_uc002tzw.2_Missense_Mutation_p.D1127N|PKP4_uc002tzx.2_Missense_Mutation_p.D827N|PKP4_uc002uaa.2_Missense_Mutation_p.D979N|uc002uab.1_Intron|PKP4_uc002uac.2_Missense_Mutation_p.D351N|PKP4_uc002uad.2_RNA	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	1170					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						AAATTATGTAGACTTTTATTC	0.418			NA								HNSCC(62;0.18)			5	137					0	0	0.000602	0	0
BAZ2B	29994	broad.mit.edu	37	2	160295207	160295207	+	Splice_Site	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:160295207C>A	uc002uao.2	-	8	1253	c.901_splice	c.e8-1	p.V301_splice	BAZ2B_uc002uap.2_Splice_Site_p.V299_splice|BAZ2B_uc002uas.1_Splice_Site_p.V238_splice|BAZ2B_uc002uau.1_Intron|BAZ2B_uc002uaq.1_Splice_Site_p.V229_splice|BAZ2B_uc002uat.3_3'UTR|BAZ2B_uc010fop.1_Intron	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GTAATAGCACCTAGATATAAA	0.373			NA											29	125					1.7881e-09	2.7883e-09	0.008361	1	0
SLC4A10	57282	broad.mit.edu	37	2	162719434	162719434	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:162719434C>T	uc002ubx.3	+	6	812	c.628C>T	c.(628-630)CGC>TGC	p.R210C	SLC4A10_uc010fpa.1_Missense_Mutation_p.R222C|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.R210C|SLC4A10_uc010zcs.1_Missense_Mutation_p.R221C	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	210	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TGAAGATGTACGCCATAGGGT	0.438			NA											4	23					0	0	0.009096	0	0
XIRP2	129446	broad.mit.edu	37	2	167760202	167760202	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:167760202G>T	uc002udx.2	+	1	228	c.210G>T	c.(208-210)ATG>ATT	p.M70I	XIRP2_uc010fpn.2_Missense_Mutation_p.M70I|XIRP2_uc010fpo.2_Missense_Mutation_p.M70I|XIRP2_uc010fpp.2_Missense_Mutation_p.M70I	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	Error:Variant_position_missing_in_A4UGR9_after_alignment					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGGAAGAGATGTGGAGTTCGA	0.512			NA											7	37					0.00198382	0.0022658	0.001984	1	0
XIRP2	129446	broad.mit.edu	37	2	168102003	168102003	+	Silent	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:168102003T>A	uc002udx.2	+	8	4119	c.4101T>A	c.(4099-4101)ACT>ACA	p.T1367T	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.T1192T|XIRP2_uc010fpq.2_Silent_p.T1145T|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1192					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AATCAGAAACTGTGTATGTTA	0.368			NA											25	65					0	0	0.00278	0	0
LRP2	4036	broad.mit.edu	37	2	169995821	169995821	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:169995821G>A	uc002ues.2	-	74	13541	c.13328C>T	c.(13327-13329)GCA>GTA	p.A4443V		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4443	Helical; (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GAAGAATCCTGCAATTGCCAG	0.483			NA											9	60					0	0	0.006214	0	0
LRP2	4036	broad.mit.edu	37	2	170094605	170094605	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:170094605C>G	uc002ues.2	-	27	4715	c.4502G>C	c.(4501-4503)AGA>ACA	p.R1501T		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1501	LDL-receptor class B 10.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ACTTACCACTCTTCTGTCCGT	0.443			NA											3	39					0	0	0.004672	0	0
UBR3	130507	broad.mit.edu	37	2	170863539	170863539	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:170863539G>T	uc010zdi.1	+	28	4069	c.4069G>T	c.(4069-4071)GAA>TAA	p.E1357*	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Nonsense_Mutation_p.E178*|UBR3_uc002uft.3_Nonsense_Mutation_p.E210*|UBR3_uc010zdj.1_Nonsense_Mutation_p.E19*	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1357	RING-type; degenerate.				sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						GGACAAAGGAGAATTCACGTG	0.403			NA											23	48					4.26978e-12	7.1829e-12	0.00333	1	0
ITGA6	3655	broad.mit.edu	37	2	173352049	173352049	+	Silent	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:173352049A>T	uc002uhp.1	+	15	2231	c.2028A>T	c.(2026-2028)ATA>ATT	p.I676I	ITGA6_uc010zdy.1_Silent_p.I557I|ITGA6_uc002uho.1_Silent_p.I676I|ITGA6_uc010fqm.1_Silent_p.I322I	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	715	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			CTTTAGAAATAACAGTGACAA	0.388			NA											20	61					0	0	0.007413	0	0
SCRN3	79634	broad.mit.edu	37	2	175263030	175263030	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:175263030G>T	uc002uiq.2	+	2	107	c.19G>T	c.(19-21)GAC>TAC	p.D7Y	CIR1_uc002uim.2_5'Flank|CIR1_uc002uin.2_5'Flank|CIR1_uc002uio.2_5'Flank|CIR1_uc002uip.2_5'Flank|SCRN3_uc010zen.1_Intron|SCRN3_uc010zeo.1_5'UTR|SCRN3_uc002uir.1_RNA	NM_024583	NP_078859	Q0VDG4	SCRN3_HUMAN	secernin 3	7					proteolysis		dipeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.229)			TTTTTCCTGTGACACTTTCGT	0.279			NA											10	61					6.40141e-05	7.90626e-05	0.000978	1	0
TTN	7273	broad.mit.edu	37	2	179582757	179582757	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:179582757C>A	uc010zfg.1	-	83	21468	c.21244G>T	c.(21244-21246)GTG>TTG	p.V7082L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V3743L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8009							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTGATCCACTTTGTTGATT	0.403			NA											21	117					2.39187e-15	4.38652e-15	0.008871	1	0
NCKAP1	10787	broad.mit.edu	37	2	183867758	183867758	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:183867758C>G	uc002upc.2	-	4	715	c.313G>C	c.(313-315)GAC>CAC	p.D105H	NCKAP1_uc002upb.2_Missense_Mutation_p.D111H	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	105					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			CAAACATGGTCCTGAAAAGAA	0.289			NA											5	38					0	0	0.000602	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187692860	187692860	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:187692860T>C	uc002upu.1	-	9	1793	c.1753A>G	c.(1753-1755)ACA>GCA	p.T585A		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	585					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			AGTTTAGCTGTGCTCCAATTG	0.373			NA											6	61					0	0	0.001168	0	0
ABCA12	26154	broad.mit.edu	37	2	215815684	215815684	+	Silent	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:215815684A>G	uc002vew.2	-	45	6991	c.6771T>C	c.(6769-6771)TAT>TAC	p.Y2257Y	ABCA12_uc002vev.2_Silent_p.Y1939Y|ABCA12_uc010zjn.1_Silent_p.Y1184Y	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2257	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTGTGAGACAATAAAGTTGGA	0.413	Ovarian(66;664 1488 5121 34295)		NA											39	103					0	0	0.004878	0	0
SPEG	10290	broad.mit.edu	37	2	220315884	220315884	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:220315884G>C	uc010fwg.2	+	5	2140	c.2140G>C	c.(2140-2142)GCT>CCT	p.A714P	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_5'UTR|SPEG_uc002vln.1_5'UTR|SPEG_uc002vlp.1_5'UTR	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	714					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity	p.V712_P722del(1)		stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CTACGTGTCCGCTGGAGAAGA	0.587			NA											12	120					0	0	0.001368	0	0
SPEG	10290	broad.mit.edu	37	2	220332025	220332025	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:220332025G>T	uc010fwg.2	+	10	3011	c.3011G>T	c.(3010-3012)CGT>CTT	p.R1004L		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1004	Ig-like 4.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TGGCTGTGCCGTGGCCGCCTG	0.627			NA											16	64					6.72482e-11	1.08072e-10	0.003163	1	0
KCNE4	23704	broad.mit.edu	37	2	223917945	223917945	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:223917945G>C	uc002vnl.3	+	2	551	c.397G>C	c.(397-399)GAC>CAC	p.D133H		NM_080671	NP_542402	Q8WWG9	KCNE4_HUMAN	potassium voltage-gated channel, Isk-related	133	Cytoplasmic (Potential).					integral to membrane	voltage-gated potassium channel activity			ovary(1)	1		Renal(207;0.0183)|Lung NSC(271;0.137)|all_lung(227;0.175)		Epithelial(121;4.48e-11)|all cancers(144;2.88e-08)|Lung(261;0.00688)|LUSC - Lung squamous cell carcinoma(224;0.008)		CTCCTCCCCGGACGTGCACCT	0.642			NA											5	33					0	0	0.000602	0	0
CUL3	8452	broad.mit.edu	37	2	225422432	225422432	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:225422432C>G	uc002vny.2	-	2	592	c.208G>C	c.(208-210)GGA>CGA	p.G70R	CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Missense_Mutation_p.G76R	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	70					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		AGCTTTTCTCCATGTTTATGC	0.333			NA											3	27					0	0	0.004672	0	0
SP110	3431	broad.mit.edu	37	2	231042313	231042313	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:231042313C>A	uc002vqh.3	-	14	1771	c.1531G>T	c.(1531-1533)GCA>TCA	p.A511S	SP110_uc002vqg.3_Missense_Mutation_p.A511S|SP110_uc002vqi.3_Missense_Mutation_p.A511S|SP110_uc010fxk.2_Missense_Mutation_p.A509S|SP110_uc010fxj.2_Missense_Mutation_p.A154S	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	511	SAND.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		CAGTTCTTTGCGTTCCTTCCT	0.428			NA											40	233					5.71845e-15	1.036e-14	0.005524	1	0
UGT1A4	54657	broad.mit.edu	37	2	234628155	234628155	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:234628155C>T	uc002vux.2	+	1	718	c.689C>T	c.(688-690)CCT>CTT	p.P230L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Missense_Mutation_p.P230L	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	230					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	TTTTCTGCCCCTTATGCAAGT	0.488	Melanoma(99;1011 1962 13201 26492)		NA											47	194					0	0	0.00361	0	0
GPCPD1	56261	broad.mit.edu	37	20	5566906	5566906	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:5566906C>A	uc002wme.3	-	5	454	c.241G>T	c.(241-243)GGT>TGT	p.G81C	GPCPD1_uc002wmd.3_5'Flank	NM_019593	NP_062539	Q9NPB8	GPCP1_HUMAN	hypothetical protein LOC56261	81	CBM20.				glycerol metabolic process|lipid metabolic process		carbohydrate binding|glycerophosphodiester phosphodiesterase activity				0						TGACATGGACCACCGATAGTC	0.373			NA											27	124					1.26454e-06	1.73779e-06	0.005443	1	0
C20orf186	149954	broad.mit.edu	37	20	31695558	31695558	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:31695558G>T	uc010zue.1	+	15	1768	c.1753G>T	c.(1753-1755)GGT>TGT	p.G585C		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	585						cytoplasm|extracellular region	lipid binding				0						AGCTGTGCTGGGTTCTGGCGT	0.468			NA											8	38					7.48243e-07	1.03872e-06	0.006214	1	0
PHF20	51230	broad.mit.edu	37	20	34519200	34519200	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:34519200G>T	uc002xek.1	+	15	2245	c.2134G>T	c.(2134-2136)GAC>TAC	p.D712Y		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	712					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GTACTGGTATGACAAGGAGTG	0.512			NA											11	44					1.08611e-07	1.55843e-07	0.000978	1	0
BPI	671	broad.mit.edu	37	20	36952318	36952318	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:36952318C>A	uc002xib.2	+	8	877	c.815C>A	c.(814-816)CCA>CAA	p.P272Q		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	272					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CCCTTTGCTCCACCAGTGATG	0.527			NA											12	49					4.3838e-07	6.16077e-07	0.001855	1	0
FAM83D	81610	broad.mit.edu	37	20	37570728	37570728	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:37570728G>T	uc002xjg.2	+	2	741	c.700G>T	c.(700-702)GAT>TAT	p.D234Y	FAM83D_uc002xjf.2_Missense_Mutation_p.D234Y	NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	204					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				TCAATTTCTGGATATGTGCAT	0.428			NA											14	120					1.15088e-07	1.64445e-07	0.004007	1	0
FAM83D	81610	broad.mit.edu	37	20	37576645	37576645	+	Splice_Site	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:37576645T>A	uc002xjg.2	+	3	907	c.866_splice	c.e3+2	p.S289_splice		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610						cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				CTCCTACAGGTAAGTCTCTAA	0.433			NA											15	60					0	0	0.003163	0	0
PTPRT	11122	broad.mit.edu	37	20	41419856	41419856	+	Silent	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:41419856A>T	uc002xkg.2	-	3	649	c.465T>A	c.(463-465)ACT>ACA	p.T155T	PTPRT_uc010ggj.2_Silent_p.T155T	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	155	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTGGCCAGAAAGTGCTGATGG	0.483			NA											7	145					0	0	0.001984	0	0
ZNF334	55713	broad.mit.edu	37	20	45130201	45130201	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:45130201T>C	uc002xsc.2	-	5	1961	c.1777A>G	c.(1777-1779)ACT>GCT	p.T593A	ZNF334_uc002xsa.2_Missense_Mutation_p.T616A|ZNF334_uc002xsb.2_Missense_Mutation_p.T555A|ZNF334_uc002xsd.2_Missense_Mutation_p.T555A|ZNF334_uc010ghl.2_Missense_Mutation_p.T592A	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	593	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				CCAGTGTGAGTTCGCTGATGT	0.438			NA											32	132					0	0	0.002096	0	0
TH1L	51497	broad.mit.edu	37	20	57561906	57561906	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:57561906C>G	uc002yag.2	+	3	328	c.301C>G	c.(301-303)CTC>GTC	p.L101V	TH1L_uc010zzu.1_Missense_Mutation_p.L101V|TH1L_uc002yaf.1_RNA|TH1L_uc002yah.2_Missense_Mutation_p.L101V	NM_198976	NP_945327	Q8IXH7	NELFD_HUMAN	TH1-like protein	101					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	all_lung(29;0.00711)		Colorectal(105;0.109)			GGCCGAGTGGCTCATTCAGAC	0.483			NA											26	70					0	0	0.005443	0	0
LAMA5	3911	broad.mit.edu	37	20	60891003	60891003	+	Splice_Site	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:60891003C>A	uc002ycq.2	-	58	7934	c.7867_splice	c.e58+1	p.D2623_splice		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor						angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCTCCGCATACCTGTGTCCAT	0.667			NA											6	8					3.59834e-05	4.47662e-05	0.001168	1	0
SLCO4A1	28231	broad.mit.edu	37	20	61303108	61303108	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:61303108G>T	uc002ydb.1	+	12	2237	c.2032G>T	c.(2032-2034)GGC>TGC	p.G678C	SLCO4A1_uc002ydc.1_Intron|SLCO4A1_uc002yde.1_Missense_Mutation_p.G80C	NM_016354	NP_057438	Q96BD0	SO4A1_HUMAN	solute carrier organic anion transporter family	678	Helical; Name=12; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(1)	1	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;2.33e-06)			CCAGGTGCTGGGCGTCCTCTT	0.627	Pancreas(168;741 2006 10379 40139 45334)		NA											31	138					1.22384e-17	2.3414e-17	0.002836	1	0
NKAIN4	128414	broad.mit.edu	37	20	61873917	61873917	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:61873917G>T	uc002yek.2	-	6	681	c.591C>A	c.(589-591)TCC>TCA	p.S197S		NM_152864	NP_690603	Q8IVV8	NKAI4_HUMAN	Na+/K+ transporting ATPase interacting 4	197						integral to membrane|plasma membrane					0	all_cancers(38;2.72e-09)					ACAAGAGACTGGATGGCTTTT	0.473			NA											35	195					4.40578e-31	9.37428e-31	0.00623	1	0
HSPA13	6782	broad.mit.edu	37	21	15746076	15746076	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr21:15746076G>A	uc002yjt.2	-	5	1347	c.1278C>T	c.(1276-1278)CCC>CCT	p.P426P	HSPA13_uc011abx.1_Silent_p.P218P	NM_006948	NP_008879	P48723	HSP13_HUMAN	heat shock protein 70kDa family member 13	426						endoplasmic reticulum|microsome	ATP binding			kidney(1)	1						CAGATGTGTTGGGATCTTTTC	0.483			NA											14	56					0	0	0.00245	0	0
NCAM2	4685	broad.mit.edu	37	21	22710708	22710708	+	Splice_Site	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr21:22710708G>A	uc002yld.1	+	8	1148	c.899_splice	c.e8-1	p.V300_splice	NCAM2_uc011acb.1_Splice_Site_p.V158_splice|NCAM2_uc011acc.1_Splice_Site_p.V325_splice	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor						neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		ATTCTTTACAGTACAGCCTCA	0.358			NA											9	37					0	0	0.000978	0	0
TIAM1	7074	broad.mit.edu	37	21	32513751	32513751	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr21:32513751C>T	uc002yow.1	-	22	4019	c.3547G>A	c.(3547-3549)GAG>AAG	p.E1183K	TIAM1_uc011adk.1_Missense_Mutation_p.E1183K|TIAM1_uc011adl.1_Missense_Mutation_p.E1123K	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1183	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						AGGTACGACTCCAGCGTGGAT	0.572			NA											30	83					0	0	0.002445	0	0
SFRS15	57466	broad.mit.edu	37	21	33043759	33043759	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr21:33043759C>A	uc002ypd.2	-	20	3823	c.3397G>T	c.(3397-3399)GTT>TTT	p.V1133F	SFRS15_uc002ype.2_Missense_Mutation_p.V1111F|SFRS15_uc010glu.2_Missense_Mutation_p.V1118F	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	1133						nucleus	nucleotide binding|RNA binding				0						TCGGGTTCAACGGATGAGGTA	0.498			NA											17	53					4.14922e-12	7.01464e-12	0.004007	1	0
POTEH	23784	broad.mit.edu	37	22	16267078	16267078	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr22:16267078C>T	uc010gqp.2	-	9	1423	c.1371G>A	c.(1369-1371)AAG>AAA	p.K457K	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.K176K|POTEH_uc002zlj.1_Silent_p.K292K	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	457										skin(1)	1						TTCCGTGCTTCTTCATTTCTT	0.358			NA											11	385					0	0	0.001855	0	0
PRAME	23532	broad.mit.edu	37	22	22890900	22890900	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr22:22890900C>T	uc002zwf.2	-	5	1275	c.1119G>A	c.(1117-1119)CTG>CTA	p.L373L	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.L357L|PRAME_uc010gtr.2_Silent_p.L373L|PRAME_uc002zwg.2_Silent_p.L373L|PRAME_uc002zwh.2_Silent_p.L373L|PRAME_uc002zwi.2_Silent_p.L373L|PRAME_uc002zwj.2_Silent_p.L373L|PRAME_uc002zwk.2_Silent_p.L373L	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	373					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		AGGCTCTCTCCAGCAGAGCTT	0.592	Melanoma(73;1707 1838 15168 27201)		NA											43	72					0	0	0.002522	0	0
MYO18B	84700	broad.mit.edu	37	22	26299729	26299729	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr22:26299729G>T	uc003abz.1	+	31	5329	c.5079G>T	c.(5077-5079)TTG>TTT	p.L1693F	MYO18B_uc003aca.1_Missense_Mutation_p.L1574F|MYO18B_uc010guy.1_Missense_Mutation_p.L1575F|MYO18B_uc010guz.1_Missense_Mutation_p.L1573F|MYO18B_uc011aka.1_Missense_Mutation_p.L847F|MYO18B_uc011akb.1_Missense_Mutation_p.L1206F	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1693	Potential.|Tail.|Gln-rich.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TCTGGAAGTTGGAATCCAGCG	0.557			NA											5	13					1.23904e-05	1.59673e-05	0.000602	1	0
ASPHD2	57168	broad.mit.edu	37	22	26830260	26830260	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr22:26830260G>A	uc003acg.2	+	2	1076	c.679G>A	c.(679-681)GAG>AAG	p.E227K		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	227	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						CCCCAGCGGGGAGTGGTTCAC	0.542			NA											8	86					0	0	0.004482	0	0
OSBP2	23762	broad.mit.edu	37	22	31091455	31091455	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr22:31091455G>T	uc003aiy.1	+	1	663	c.559G>T	c.(559-561)GGC>TGC	p.G187C	OSBP2_uc011ala.1_Intron|OSBP2_uc010gwc.1_Intron|OSBP2_uc003aix.1_Missense_Mutation_p.G187C|OSBP2_uc011alb.1_Missense_Mutation_p.G187C|OSBP2_uc003aiz.1_Missense_Mutation_p.G187C	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	187	PH.				lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CAGCTTCGAGGGCTGGCTTCT	0.597			NA											13	63					3.27435e-08	4.81979e-08	0.00245	1	0
MIOX	55586	broad.mit.edu	37	22	50925850	50925850	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr22:50925850G>T	uc003bll.1	+	2	166	c.52G>T	c.(52-54)GAC>TAC	p.D18Y	MIOX_uc003blm.1_Missense_Mutation_p.D18Y|MIOX_uc003bln.1_Missense_Mutation_p.D18Y	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	18					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACCTGATGTGGACCCAGAGGT	0.597			NA											7	42					5.18039e-06	6.89709e-06	0.00308	1	0
NUP210	23225	broad.mit.edu	37	3	13368843	13368843	+	Missense_Mutation	SNP	C	C	A	rs61751581	byFrequency	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:13368843C>A	uc003bxv.1	-	32	4464	c.4381G>T	c.(4381-4383)GCA>TCA	p.A1461S		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1461	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGGTGCTCTGCGTCCCACACA	0.642			NA											6	28					8.12818e-05	9.89581e-05	0.001984	1	0
ZNF385D	79750	broad.mit.edu	37	3	21706379	21706379	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:21706379G>T	uc003cce.2	-	2	572	c.164C>A	c.(163-165)GCG>GAG	p.A55E	ZNF385D_uc010hfb.1_Intron	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	55						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						GGTACTTACCGCATTGAAATT	0.473			NA											13	86					1.05317e-09	1.6536e-09	0.00245	1	0
NR1D2	9975	broad.mit.edu	37	3	24001260	24001260	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:24001260G>C	uc003ccs.2	+	4	790	c.471G>C	c.(469-471)CAG>CAC	p.Q157H	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.Q82H	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	157	Nuclear receptor.|NR C4-type.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						ACAGATGTCAGCAATGTCGCT	0.378			NA											18	99					0	0	0.008871	0	0
SLC4A7	9497	broad.mit.edu	37	3	27473031	27473031	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:27473031G>A	uc003cdv.2	-	7	952	c.881C>T	c.(880-882)CCT>CTT	p.P294L	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_Intron|SLC4A7_uc003cdu.3_Intron|SLC4A7_uc011aww.1_Missense_Mutation_p.P303L|SLC4A7_uc011awx.1_Missense_Mutation_p.P290L|SLC4A7_uc011awy.1_Missense_Mutation_p.P286L|SLC4A7_uc011awz.1_Intron|SLC4A7_uc011axa.1_Intron|SLC4A7_uc011axb.1_Missense_Mutation_p.P290L|SLC4A7_uc010hfm.2_Intron|SLC4A7_uc003cdw.2_Intron	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	294	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						TGAGCCTGCAGGGGTTCCAGC	0.512			NA											14	65					0	0	0.001855	0	0
ARPP21	10777	broad.mit.edu	37	3	35723305	35723305	+	Missense_Mutation	SNP	C	C	T	rs139626582		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:35723305C>T	uc003cgb.2	+	3	326	c.62C>T	c.(61-63)ACG>ATG	p.T21M	ARPP21_uc003cga.2_Missense_Mutation_p.T21M|ARPP21_uc011axy.1_Missense_Mutation_p.T21M|ARPP21_uc003cfz.2_RNA|ARPP21_uc003cgc.2_Missense_Mutation_p.T21M|ARPP21_uc003cgd.2_Missense_Mutation_p.T21M|ARPP21_uc011axx.1_RNA|ARPP21_uc003cge.2_Missense_Mutation_p.T21M	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	21						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GAGCAGGAGACGGCCACTCCA	0.468			NA											7	27					0	0	0.001984	0	0
TRANK1	9881	broad.mit.edu	37	3	36898278	36898278	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:36898278T>C	uc003cgj.2	-	3	1455	c.1153A>G	c.(1153-1155)AAA>GAA	p.K385E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	935					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACTTGGCCTTTATTGATACCT	0.498			NA											15	96					0	0	0.004007	0	0
CCR8	1237	broad.mit.edu	37	3	39373851	39373851	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:39373851C>A	uc010hhr.2	+	2	167	c.29C>A	c.(28-30)ACA>AAA	p.T10K	CCR8_uc003cjm.2_5'UTR	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	10	Extracellular (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		CTCAGTGTGACAACAGTGACC	0.408			NA											16	81					3.99206e-14	7.13763e-14	0.007413	1	0
NKTR	4820	broad.mit.edu	37	3	42679196	42679196	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:42679196G>A	uc003clo.2	+	13	2147	c.2000G>A	c.(1999-2001)AGA>AAA	p.R667K	NKTR_uc003clm.1_Missense_Mutation_p.R414K|NKTR_uc003clp.2_Missense_Mutation_p.R414K|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.R557K|NKTR_uc003clr.1_Missense_Mutation_p.R414K|NKTR_uc003cls.2_Missense_Mutation_p.R367K	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	667	Arg/Ser-rich.				protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		TACCATAAAAGAGAAAAAAAT	0.378			NA											10	76					0	0	0.006214	0	0
RBM6	10180	broad.mit.edu	37	3	50036934	50036934	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:50036934G>A	uc003cyc.2	+	6	1678	c.1545G>A	c.(1543-1545)ATG>ATA	p.M515I	RBM6_uc011bdh.1_Intron|RBM6_uc010hlc.1_Missense_Mutation_p.M34I|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	515	RRM.				RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		TCGGATGCATGGAGGCCAACC	0.433			NA											16	95					0	0	0.00499	0	0
RBM6	10180	broad.mit.edu	37	3	50112758	50112758	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:50112758G>T	uc003cyc.2	+	20	3374	c.3241G>T	c.(3241-3243)GAG>TAG	p.E1081*	RBM6_uc003cyd.2_Nonsense_Mutation_p.E559*|RBM6_uc003cye.2_Nonsense_Mutation_p.E559*|RBM6_uc011bdi.1_Nonsense_Mutation_p.E423*|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	1081	G-patch.				RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		GGCTTCATCAGAGGAGGTAAA	0.483			NA											7	69					1.06961e-07	1.54449e-07	0.00308	1	0
DOCK3	1795	broad.mit.edu	37	3	51264742	51264742	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:51264742C>T	uc011bds.1	+	16	1429	c.1406C>T	c.(1405-1407)CCA>CTA	p.P469L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	469	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCAGGAGAGCCAAATAGGAGT	0.468			NA											21	135					0	0	0.002299	0	0
RAD54L2	23132	broad.mit.edu	37	3	51690031	51690031	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:51690031G>T	uc011bdt.1	+	19	3196	c.3071G>T	c.(3070-3072)CGT>CTT	p.R1024L	RAD54L2_uc003dbh.2_Missense_Mutation_p.R613L|RAD54L2_uc011bdu.1_Missense_Mutation_p.R718L|RAD54L2_uc003dbj.2_Missense_Mutation_p.R350L	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1024						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		GCCAGTGTTCGTCCTGTGCAG	0.507			NA											24	123					5.45024e-15	9.9003e-15	0.00333	1	0
PXK	54899	broad.mit.edu	37	3	58385031	58385031	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:58385031G>T	uc003djz.1	+	12	1207	c.1108G>T	c.(1108-1110)GTG>TTG	p.V370L	PXK_uc003djx.1_Missense_Mutation_p.V370L|PXK_uc003djy.1_Missense_Mutation_p.V353L|PXK_uc003dka.1_Missense_Mutation_p.V370L|PXK_uc003dkb.1_Missense_Mutation_p.V287L|PXK_uc003dkc.1_Missense_Mutation_p.V353L|PXK_uc011bfe.1_Missense_Mutation_p.V337L|PXK_uc010hnj.1_Missense_Mutation_p.V337L|PXK_uc003dkd.1_Missense_Mutation_p.V233L|PXK_uc010hnk.1_Missense_Mutation_p.V144L	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	370	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		TCAAGTGGCCGTGTTGGAGTC	0.438			NA											6	31					3.59834e-05	4.47662e-05	0.001168	1	0
CADPS	8618	broad.mit.edu	37	3	62636563	62636563	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:62636563G>T	uc003dll.2	-	5	1522	c.1162C>A	c.(1162-1164)CAG>AAG	p.Q388K	CADPS_uc003dlm.2_Missense_Mutation_p.Q388K|CADPS_uc003dln.2_Missense_Mutation_p.Q388K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	388					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TTGGAGAGCTGGTTCTCACTC	0.517			NA											8	52					1.76689e-08	2.62345e-08	0.006214	1	0
KBTBD8	84541	broad.mit.edu	37	3	67054223	67054223	+	Nonsense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:67054223C>T	uc003dmy.2	+	3	885	c.832C>T	c.(832-834)CAG>TAG	p.Q278*	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	278										ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		TGGCTGTACACAGAGGCTTGG	0.428			NA											23	101					0	0	0.00333	0	0
FAM86D	692099	broad.mit.edu	37	3	75476773	75476773	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:75476773C>T	uc003dpp.3	-	6	651	c.292G>A	c.(292-294)GCA>ACA	p.A98T	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_Missense_Mutation_p.A6T|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						AAGATGAATGCCCGGGGGCGG	0.587			NA											8	32					0	0	0.00308	0	0
CLDND1	56650	broad.mit.edu	37	3	98237790	98237790	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:98237790C>A	uc003dsp.2	-	3	1222	c.342G>T	c.(340-342)CAG>CAT	p.Q114H	CLDND1_uc003dso.2_Missense_Mutation_p.Q114H|CLDND1_uc003dsq.2_Missense_Mutation_p.Q114H|CLDND1_uc003dss.2_Missense_Mutation_p.Q114H|CLDND1_uc003dsr.2_Missense_Mutation_p.Q19H|CLDND1_uc003dst.2_Missense_Mutation_p.Q137H|CLDND1_uc003dsu.2_Missense_Mutation_p.Q114H|CLDND1_uc003dsv.2_Missense_Mutation_p.Q114H	NM_019895	NP_063948	Q9NY35	CLDN1_HUMAN	claudin domain containing 1 protein isoform a	114						integral to membrane				ovary(1)	1						TCTCCATGAACTGCTCAGTTA	0.388			NA											5	33					5.18039e-06	6.89709e-06	0.00308	1	0
FAM55C	91775	broad.mit.edu	37	3	101540739	101540739	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:101540739G>T	uc003dvn.2	+	8	2258	c.1621G>T	c.(1621-1623)GTT>TTT	p.V541F	FAM55C_uc010hpn.2_Missense_Mutation_p.V541F	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	541						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						TCCAGATGAAGTTATTGTGAA	0.498			NA											18	77					8.00594e-06	1.05561e-05	0.007413	1	0
C3orf1	51300	broad.mit.edu	37	3	119236073	119236073	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:119236073G>A	uc003ecn.2	+	6	831	c.618G>A	c.(616-618)CTG>CTA	p.L206L	C3orf1_uc003eco.2_RNA|C3orf1_uc003ecp.2_RNA	NM_016589	NP_057673	Q9NPL8	TIDC1_HUMAN	hypothetical protein LOC51300	206	Helical; (Potential).					integral to membrane|mitochondrial inner membrane	protein transporter activity				0				GBM - Glioblastoma multiforme(114;0.186)		GAGGCCTGCTGATGGCATTTC	0.453			NA											5	76					0	0	0.001168	0	0
ARGFX	503582	broad.mit.edu	37	3	121289635	121289635	+	Silent	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:121289635G>C	uc003eef.2	+	2	170	c.75G>C	c.(73-75)GTG>GTC	p.V25V		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	25						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		ACATGAAGGTGATACCACCAC	0.463			NA											6	88					0	0	0.001168	0	0
FBXO40	51725	broad.mit.edu	37	3	121341065	121341065	+	Silent	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:121341065T>C	uc003eeg.2	+	3	999	c.789T>C	c.(787-789)GCT>GCC	p.A263A		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	263					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GAGAGGGCGCTCCCAAAAAGA	0.483			NA											10	34					0	0	0.006214	0	0
GOLGB1	2804	broad.mit.edu	37	3	121413027	121413027	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:121413027C>T	uc003eei.3	-	13	6454	c.6328G>A	c.(6328-6330)GAA>AAA	p.E2110K	GOLGB1_uc010hrc.2_Missense_Mutation_p.E2115K|GOLGB1_uc003eej.3_Missense_Mutation_p.E2076K|GOLGB1_uc011bjm.1_Missense_Mutation_p.E1996K|GOLGB1_uc010hrd.1_Missense_Mutation_p.E2074K	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2110	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TTAACTGATTCTTTATTTGAC	0.403			NA											11	195					0	0	0.001368	0	0
ADCY5	111	broad.mit.edu	37	3	123049747	123049747	+	Silent	SNP	G	G	T	rs144214981	byFrequency	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:123049747G>T	uc003egh.1	-	5	1635	c.1635C>A	c.(1633-1635)ATC>ATA	p.I545I	ADCY5_uc003egg.1_Silent_p.I178I|ADCY5_uc003egi.1_Silent_p.I104I	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	545	Guanylate cyclase 1.|Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		AGATGGCCTCGATCATGTCCA	0.602			NA											8	25					2.17888e-05	2.75588e-05	0.006214	1	0
RAB43	339122	broad.mit.edu	37	3	128852984	128852984	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:128852984C>T	uc003elo.1	-	9	807	c.596G>A	c.(595-597)AGA>AAA	p.R199K	ISY1_uc010hsz.1_Intron|ISY1_uc003elp.1_Missense_Mutation_p.R199K|ISY1_uc010hta.1_Missense_Mutation_p.R221K	NM_020701	NP_065752	Q86YS6	RAB43_HUMAN	ISY1 splicing factor homolog	Error:Variant_position_missing_in_Q86YS6_after_alignment					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			lung(1)	1						ctTTTCTCCTCTTGCCAGCCG	0.433			NA											8	75					0	0	0.004482	0	0
EPHB1	2047	broad.mit.edu	37	3	134968224	134968224	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:134968224T>A	uc003eqt.2	+	15	2957	c.2737T>A	c.(2737-2739)TTT>ATT	p.F913I	EPHB1_uc003equ.2_Missense_Mutation_p.F474I	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	913	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CTTCACGGCCTTTACCACCGT	0.587			NA											14	50					0	0	0.00245	0	0
MSL2	55167	broad.mit.edu	37	3	135870369	135870369	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:135870369C>A	uc003eqx.1	-	2	2087	c.1354G>T	c.(1354-1356)GTG>TTG	p.V452L	MSL2_uc011bmb.1_Missense_Mutation_p.V378L	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	452	Lys-rich.				histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						TTTTTGTACACAGTCTTGGTA	0.428			NA											16	104					2.35188e-11	3.87069e-11	0.006122	1	0
STAG1	10274	broad.mit.edu	37	3	136141303	136141303	+	Missense_Mutation	SNP	A	A	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:136141303A>C	uc003era.1	-	19	2278	c.1986T>G	c.(1984-1986)ATT>ATG	p.I662M	STAG1_uc003erb.1_Missense_Mutation_p.I662M|STAG1_uc003erc.1_Missense_Mutation_p.I436M|STAG1_uc010hua.1_Missense_Mutation_p.I525M	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	662					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						CAAACTCATCAATCAGCTGGC	0.358			NA											22	72					0	0	0.001882	0	0
SLC9A9	285195	broad.mit.edu	37	3	143082363	143082363	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:143082363C>A	uc003evn.2	-	14	1749	c.1567G>T	c.(1567-1569)GCT>TCT	p.A523S		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	523					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						AAGAGCCGAGCACTCTCTGCT	0.373			NA											19	80					4.35082e-09	6.69281e-09	0.010504	1	0
SLC9A9	285195	broad.mit.edu	37	3	143292936	143292936	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:143292936G>T	uc003evn.2	-	8	1176	c.994C>A	c.(994-996)CTA>ATA	p.L332I		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	332	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						TGACCTGTTAGGCCGGCAGCC	0.537			NA											14	41					2.23348e-06	3.00289e-06	0.004007	1	0
MFSD1	64747	broad.mit.edu	37	3	158537491	158537491	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:158537491G>T	uc003fcl.1	+	8	736	c.706G>T	c.(706-708)GAT>TAT	p.D236Y	MFSD1_uc003fcm.1_RNA|MFSD1_uc003fcn.1_Missense_Mutation_p.D139Y|MFSD1_uc011bow.1_Missense_Mutation_p.D197Y|MFSD1_uc011box.1_Missense_Mutation_p.D163Y	NM_022736	NP_073573	Q9H3U5	MFSD1_HUMAN	major facilitator superfamily domain containing	236					transmembrane transport	integral to membrane					0			Lung(72;0.00372)|LUSC - Lung squamous cell carcinoma(72;0.00523)			TGCCTACTTGGATCAGAGAGC	0.353	Pancreas(62;1186 1654 36636 37908)		NA											10	42					1.58986e-06	2.1588e-06	0.008291	1	0
SI	6476	broad.mit.edu	37	3	164766935	164766935	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:164766935G>C	uc003fei.2	-	15	1757	c.1695C>G	c.(1693-1695)AGC>AGG	p.S565R		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	565	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CTATAGCCATGCTGTATCCAT	0.328			NA								HNSCC(35;0.089)			14	38					0	0	0.003163	0	0
SLITRK3	22865	broad.mit.edu	37	3	164905951	164905951	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:164905951G>T	uc003fej.3	-	2	3112	c.2668C>A	c.(2668-2670)CCA>ACA	p.P890T	SLITRK3_uc003fek.2_Missense_Mutation_p.P890T	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	890	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GCAGGCTGTGGCCTCTCTCGA	0.562			NA								HNSCC(40;0.11)			13	62					5.50884e-06	7.29174e-06	0.001368	1	0
PLD1	5337	broad.mit.edu	37	3	171426597	171426597	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:171426597C>A	uc003fhs.2	-	11	1209	c.1093G>T	c.(1093-1095)GTG>TTG	p.V365L	PLD1_uc003fht.2_Missense_Mutation_p.V365L	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	365					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	GCATTTGCCACATCTTCAAAA	0.318	NSCLC(149;2174 3517 34058)		NA											15	62					1.67942e-08	2.51544e-08	0.006122	1	0
RTP1	132112	broad.mit.edu	37	3	186917596	186917596	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:186917596T>A	uc003frg.2	+	2	560	c.530T>A	c.(529-531)GTG>GAG	p.V177E		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	177	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		CGCATCCACGTGGCCAGCCGC	0.672			NA											9	23					0	0	0.006214	0	0
MASP1	5648	broad.mit.edu	37	3	186980341	186980341	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:186980341G>T	uc003frh.1	-	3	737	c.405C>A	c.(403-405)TAC>TAA	p.Y135*	MASP1_uc003fri.2_Nonsense_Mutation_p.Y135*|MASP1_uc003frj.2_Nonsense_Mutation_p.Y104*|MASP1_uc003frk.1_Nonsense_Mutation_p.Y135*|MASP1_uc011bse.1_Nonsense_Mutation_p.Y109*	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	135	Interaction with FCN2.|Interaction with MBL2.|Homodimerization (By similarity).|CUB 1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CCACAGCCATGTAGTGGGCAT	0.498			NA											12	45					3.07112e-06	4.10484e-06	0.000978	1	0
TP63	8626	broad.mit.edu	37	3	189612219	189612219	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr3:189612219G>T	uc003fry.2	+	14	2060	c.1971G>T	c.(1969-1971)GAG>GAT	p.E657D	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Missense_Mutation_p.E563D|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Missense_Mutation_p.E478D	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	657	Transactivation inhibition.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CCCGAGATGAGTGGAATGACT	0.552			NA							Hay-Wells_syndrome	HNSCC(45;0.13)			21	70					7.45023e-12	1.24718e-11	0.010504	1	0
CTBP1	1487	broad.mit.edu	37	4	1206751	1206751	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:1206751G>A	uc003gcv.1	-	8	1254	c.1089C>T	c.(1087-1089)GCC>GCT	p.A363A	uc003gcs.1_Intron|CTBP1_uc003gct.1_Silent_p.A344A|CTBP1_uc003gcu.1_Silent_p.A352A|CTBP1_uc003gcw.2_Silent_p.A37A	NM_001328	NP_001319	Q13363	CTBP1_HUMAN	C-terminal binding protein 1 isoform 1	363					interspecies interaction between organisms|negative regulation of cell proliferation|negative regulation of histone H4 acetylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone deacetylation|protein phosphorylation|regulation of cell cycle|regulation of transcription by chromatin organization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|viral genome replication|white fat cell differentiation	cytoplasm|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein C-terminus binding|protein domain specific binding|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00818)	Colorectal(103;0.2)		GGTCCATGCTGGCCCAGTGGG	0.647			NA											11	56					0	0	0.003163	0	0
LETM1	3954	broad.mit.edu	37	4	1834499	1834499	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:1834499C>T	uc003gdv.2	-	6	1349	c.1052G>A	c.(1051-1053)CGG>CAG	p.R351Q		NM_012318	NP_036450	O95202	LETM1_HUMAN	leucine zipper-EF-hand containing transmembrane	351	Mitochondrial matrix (Potential).|LETM1.				cristae formation	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			central_nervous_system(1)	1			all cancers(2;0.00756)|OV - Ovarian serous cystadenocarcinoma(23;0.00989)|Epithelial(3;0.0141)			GGAGCGCAGCCGCATGGTAAG	0.517			NA											14	63					0	0	0.004007	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306941	2306941	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:2306941C>A	uc003gex.1	-	8	1445	c.1126G>T	c.(1126-1128)GAG>TAG	p.E376*	ZFYVE28_uc011bvk.1_Nonsense_Mutation_p.E306*|ZFYVE28_uc011bvl.1_Nonsense_Mutation_p.E346*|ZFYVE28_uc003gew.1_Nonsense_Mutation_p.E262*	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	376					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GGGCTGCCCTCCGCTCCTGGC	0.672			NA											5	45					0.00116845	0.00134126	0.001168	1	0
CYTL1	54360	broad.mit.edu	37	4	5018685	5018685	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:5018685A>T	uc003gig.2	-	3	230	c.205T>A	c.(205-207)TGT>AGT	p.C69S		NM_018659	NP_061129	Q9NRR1	CYTL1_HUMAN	cytokine-like 1 precursor	69					signal transduction	extracellular space|soluble fraction	receptor binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		TCCAGCACACAGTAATTCTGG	0.557	Colon(15;457 478 29696 43408 47165)		NA											20	97					0	0	0.008871	0	0
DRD5	1816	broad.mit.edu	37	4	9784157	9784157	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:9784157C>A	uc003gmb.3	+	1	900	c.504C>A	c.(502-504)TCC>TCA	p.S168S		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	168	Helical; Name=4; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GGACCTTGTCCATCCTCATCT	0.632			NA											4	37					1.23904e-05	1.59673e-05	0.000602	1	0
DRD5	1816	broad.mit.edu	37	4	9784743	9784743	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:9784743G>T	uc003gmb.3	+	1	1486	c.1090G>T	c.(1090-1092)GAC>TAC	p.D364Y		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	364	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CTTCAACGCCGACTTTCAGAA	0.592			NA											16	50					1.15088e-07	1.64445e-07	0.004007	1	0
BOD1L	259282	broad.mit.edu	37	4	13606600	13606600	+	Missense_Mutation	SNP	C	C	T	rs151278291	byFrequency	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:13606600C>T	uc003gmz.1	-	10	2041	c.1924G>A	c.(1924-1926)GAC>AAC	p.D642N	BOD1L_uc010idr.1_5'UTR	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	642	Lys-rich.						DNA binding			ovary(5)|breast(1)	6						TTGTTTTCGTCAACTACATGC	0.398			NA											25	61					0	0	0.00333	0	0
BST1	683	broad.mit.edu	37	4	15707203	15707203	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:15707203T>A	uc003goh.3	+	2	449	c.254T>A	c.(253-255)GTG>GAG	p.V85E		NM_004334	NP_004325	Q10588	BST1_HUMAN	bone marrow stromal cell antigen 1 precursor	85					humoral immune response|multicellular organismal development	anchored to membrane|extrinsic to membrane|plasma membrane	binding|NAD+ nucleosidase activity			central_nervous_system(1)	1						CCCTGCTCCGTGCTGCCCTCA	0.473			NA											16	80					0	0	0.004007	0	0
LDB2	9079	broad.mit.edu	37	4	16587550	16587550	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:16587550G>T	uc003goz.2	-	5	926	c.610C>A	c.(610-612)CTC>ATC	p.L204I	LDB2_uc003gpa.2_Missense_Mutation_p.L204I|LDB2_uc003gpb.2_Missense_Mutation_p.L204I|LDB2_uc011bxh.1_Intron|LDB2_uc010iee.2_Missense_Mutation_p.L204I|LDB2_uc003goy.2_Missense_Mutation_p.L80I|LDB2_uc011bxi.1_Missense_Mutation_p.L80I	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	204							LIM domain binding|transcription cofactor activity				0						CTTACCCTGAGGTAGTTGAGG	0.408			NA											13	67					2.68362e-12	4.54817e-12	0.001368	1	0
SLIT2	9353	broad.mit.edu	37	4	20525799	20525799	+	Silent	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:20525799A>T	uc003gpr.1	+	14	1641	c.1437A>T	c.(1435-1437)TCA>TCT	p.S479S	SLIT2_uc003gps.1_Silent_p.S479S	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	479	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TCCGTTGTTCAGGTAATTTCT	0.478			NA											24	88					0	0	0.002299	0	0
PCDH7	5099	broad.mit.edu	37	4	30726008	30726008	+	Silent	SNP	C	C	A	rs148242685		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:30726008C>A	uc003gsk.1	+	1	3972	c.2964C>A	c.(2962-2964)GGC>GGA	p.G988G	PCDH7_uc011bxw.1_Silent_p.G941G|PCDH7_uc011bxx.1_Silent_p.G988G	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	988	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						GTGGGCCCGGCAGTCCTGACC	0.517			NA											8	63					0.00307968	0.00347099	0.00308	1	0
TLR1	7096	broad.mit.edu	37	4	38798817	38798817	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:38798817C>A	uc003gtl.2	-	4	1910	c.1636G>T	c.(1636-1638)GTG>TTG	p.V546L		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	546	Extracellular (Potential).|LRRCT.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						CCCTCTAACACTTCACTTGAT	0.413	GBM(5;216 373 40795 46382)		NA											58	301					2.93687e-30	6.21017e-30	0.00361	1	0
GABRG1	2565	broad.mit.edu	37	4	46053569	46053569	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:46053569G>T	uc003gxb.2	-	8	1155	c.1003C>A	c.(1003-1005)CTC>ATC	p.L335I		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	335	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		GAAACAAAGAGATCCATCGCA	0.383			NA											19	49					2.39187e-15	4.38652e-15	0.008871	1	0
USP46	64854	broad.mit.edu	37	4	53468093	53468093	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:53468093T>C	uc003gzn.2	-	7	1035	c.850A>G	c.(850-852)AAC>GAC	p.N284D	USP46_uc003gzm.3_Missense_Mutation_p.N277D|USP46_uc011bzr.1_Missense_Mutation_p.N261D|USP46_uc011bzs.1_Missense_Mutation_p.N168D	NM_022832	NP_073743	P62068	UBP46_HUMAN	ubiquitin specific peptidase 46 isoform 1	284					behavior|protein deubiquitination|regulation of synaptic transmission, GABAergic|ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(32;0.0295)			CTGGAGGTGTTGAAGAGCCGG	0.542			NA											18	49					0	0	0.010504	0	0
PDGFRA	5156	broad.mit.edu	37	4	55155261	55155261	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:55155261C>A	uc003han.3	+	21	3191	c.2860C>A	c.(2860-2862)CTG>ATG	p.L954M	PDGFRA_uc003haa.2_Missense_Mutation_p.L714M	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	954	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GGAGAATCTGCTGCCTGGACA	0.488	Pancreas(151;208 1913 7310 23853 37092)		NA	Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			8	35					0.00307968	0.00347099	0.00308	1	0
LPHN3	23284	broad.mit.edu	37	4	62598770	62598770	+	Missense_Mutation	SNP	T	T	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:62598770T>G	uc010ihh.2	+	5	866	c.693T>G	c.(691-693)TTT>TTG	p.F231L	LPHN3_uc003hcq.3_Missense_Mutation_p.F231L|LPHN3_uc010ihg.1_Missense_Mutation_p.F299L|LPHN3_uc003hcs.1_Missense_Mutation_p.F60L	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	231	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TAGTAAAGTTTGATTTGCGGA	0.463			NA											9	19					0	0	0.008291	0	0
EPHA5	2044	broad.mit.edu	37	4	66213899	66213899	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:66213899C>A	uc003hcy.2	-	15	2724	c.2531G>T	c.(2530-2532)TGG>TTG	p.W844L	EPHA5_uc003hcx.2_Missense_Mutation_p.W776L|EPHA5_uc003hcz.2_Missense_Mutation_p.W822L|EPHA5_uc011cah.1_Missense_Mutation_p.W845L|EPHA5_uc011cai.1_Missense_Mutation_p.W823L|EPHA5_uc003hda.2_Missense_Mutation_p.W845L	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	844	Cytoplasmic (Potential).|Protein kinase.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						TGGGGCAGTCCATCTGATTGG	0.393			NA								TSP Lung(17;0.13)			8	78					1.12685e-05	1.46598e-05	0.004482	1	0
EPHA5	2044	broad.mit.edu	37	4	66467571	66467571	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:66467571C>G	uc003hcy.2	-	3	891	c.698G>C	c.(697-699)TGC>TCC	p.C233S	EPHA5_uc003hcx.2_Missense_Mutation_p.C164S|EPHA5_uc003hcz.2_Missense_Mutation_p.C233S|EPHA5_uc011cah.1_Missense_Mutation_p.C233S|EPHA5_uc011cai.1_Missense_Mutation_p.C233S|EPHA5_uc003hda.2_Missense_Mutation_p.C233S	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	233	Extracellular (Potential).|Cys-rich.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						CACAGAAGGGCATTTTTTATA	0.448			NA								TSP Lung(17;0.13)			14	25					0	0	0.00245	0	0
BMP2K	55589	broad.mit.edu	37	4	79832722	79832722	+	Silent	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:79832722T>A	uc003hlk.2	+	16	3187	c.3021T>A	c.(3019-3021)ACT>ACA	p.T1007T	PAQR3_uc003hlm.2_Intron|PAQR3_uc003hln.2_Intron|uc010ijm.1_5'Flank	NM_198892	NP_942595	Q9NSY1	BMP2K_HUMAN	BMP-2 inducible kinase isoform a	1007						nucleus	ATP binding|protein serine/threonine kinase activity			lung(1)	1						CAAAGAAGACTTTGAAGCCTA	0.493			NA											27	51					0	0	0.004656	0	0
COL25A1	84570	broad.mit.edu	37	4	109805343	109805343	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:109805343C>A	uc003hze.1	-	18	1542	c.1011G>T	c.(1009-1011)CCG>CCT	p.P337P	COL25A1_uc003hzg.2_Silent_p.P337P|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Silent_p.P118P	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	337	Extracellular (Potential).|Collagen-like 4.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CCTTTATCCCCGGAAGTCCAG	0.408			NA											19	32					8.28177e-16	1.55397e-15	0.007413	1	0
ELOVL6	79071	broad.mit.edu	37	4	110980902	110980902	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:110980902C>T	uc003hzz.2	-	4	356	c.230G>A	c.(229-231)GGT>GAT	p.G77D	ELOVL6_uc003iaa.2_Missense_Mutation_p.G77D	NM_001130721	NP_001124193	Q9H5J4	ELOV6_HUMAN	elongation of very long chain fatty acids-like	77	Helical; (Potential).				fatty acid elongation, saturated fatty acid|long-chain fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process		fatty acid elongase activity|protein binding			haematopoietic_and_lymphoid_tissue(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00462)		TCGAAGAGCACCGAATATACT	0.403			NA											6	22					0	0	0.001168	0	0
NAA15	80155	broad.mit.edu	37	4	140291517	140291518	+	Missense_Mutation	DNP	GG	GG	AT			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:140291517_140291518GG>AT	uc003ihu.1	+	15	2162_2163	c.1906_1907GG>AT	c.(1906-1908)GGA>ATA	p.G636I		NM_057175	NP_476516	Q9BXJ9	NAA15_HUMAN	NMDA receptor regulated 1	636					angiogenesis|cell differentiation|N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	protein binding			ovary(1)|skin(1)	2						tgaggagataggaggtccaaaa	0.183			NA											3	27					0	0	0.004672	0	0
FAT1	2195	broad.mit.edu	37	4	187541782	187541782	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr4:187541782C>T	uc003izf.2	-	10	6146	c.5958G>A	c.(5956-5958)GCG>GCA	p.A1986A		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1986	Extracellular (Potential).|Cadherin 18.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CTTTCACTACCGCAGAGTAGA	0.438	Colon(197;1040 2055 4143 4984 49344)		NA								HNSCC(5;0.00058)			63	172					0	0	0.00361	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5237092	5237092	+	Missense_Mutation	SNP	A	A	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:5237092A>C	uc003jdl.2	+	14	2172	c.2034A>C	c.(2032-2034)TTA>TTC	p.L678F	ADAMTS16_uc003jdk.1_Missense_Mutation_p.L678F|ADAMTS16_uc010itk.1_Intron	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	678	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						ATCAGGACTTATGCAAACTCT	0.333			NA											66	73					0	0	0.00361	0	0
KIAA0947	23379	broad.mit.edu	37	5	5489358	5489358	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:5489358G>A	uc003jdm.3	+	19	6938	c.6716G>A	c.(6715-6717)CGG>CAG	p.R2239Q		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	2239										ovary(1)|central_nervous_system(1)	2						GAAGCTTGGCGGAGAGAGGCC	0.532			NA											3	47					0	0	0.004672	0	0
DNAH5	1767	broad.mit.edu	37	5	13823411	13823411	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:13823411C>A	uc003jfd.2	-	40	6690	c.6648G>T	c.(6646-6648)AAG>AAT	p.K2216N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2216					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTAACCTGCCTTGTCCAGAA	0.388			NA							Kartagener_syndrome				122	115					2.51472e-61	5.45256e-61	0.00361	1	0
CDH9	1007	broad.mit.edu	37	5	26902674	26902674	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:26902674G>T	uc003jgs.1	-	7	1333	c.1164C>A	c.(1162-1164)TAC>TAA	p.Y388*		NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	388	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CTTCTATCAAGTAAGAGACTT	0.393	Melanoma(8;187 585 15745 40864 52829)		NA											7	195					0.000274275	0.000321873	0.004482	1	0
ADAMTS12	81792	broad.mit.edu	37	5	33616054	33616054	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:33616054C>G	uc003jia.1	-	15	2430	c.2267G>C	c.(2266-2268)GGG>GCG	p.G756A	ADAMTS12_uc010iuq.1_Missense_Mutation_p.G671A	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	756	Spacer 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GATAATAAACCCTCCATTCAG	0.478			NA								HNSCC(64;0.19)			30	242					0	0	0.002445	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33649757	33649757	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:33649757C>A	uc003jia.1	-	8	1399	c.1236G>T	c.(1234-1236)GTG>GTT	p.V412V	ADAMTS12_uc010iuq.1_Silent_p.V412V	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	412	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GATGTCTGCCCACAGGCTCAC	0.547			NA								HNSCC(64;0.19)			6	136					0.000157383	0.000188254	0.00308	1	0
DNAJC21	134218	broad.mit.edu	37	5	34937456	34937456	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:34937456G>T	uc003jjc.2	+	5	691	c.464G>T	c.(463-465)TGG>TTG	p.W155L	DNAJC21_uc003jjb.2_Missense_Mutation_p.W155L|DNAJC21_uc010iuu.1_Missense_Mutation_p.W39L	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	155					protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TACGCTTATTGGCAGAGTTTC	0.373			NA											11	107					2.80697e-09	4.34731e-09	0.000978	1	0
PRLR	5618	broad.mit.edu	37	5	35066176	35066176	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:35066176G>T	uc003jjm.2	-	10	1414	c.884C>A	c.(883-885)GCC>GAC	p.A295D	PRLR_uc003jjg.1_Missense_Mutation_p.A295D|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.A194D	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	295	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCATCCCAAGGCACTCAGTAG	0.438			NA											6	71					2.0095e-06	2.71242e-06	0.001984	1	0
SPEF2	79925	broad.mit.edu	37	5	35800100	35800100	+	Nonsense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:35800100A>T	uc003jjo.2	+	34	4972	c.4861A>T	c.(4861-4863)AAG>TAG	p.K1621*	SPEF2_uc003jjp.1_Nonsense_Mutation_p.K1107*|SPEF2_uc003jjr.2_Nonsense_Mutation_p.K676*	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1621					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGACTATGAGAAGGATCCACC	0.413			NA											21	540					0	0	0.00333	0	0
SLC1A3	6507	broad.mit.edu	37	5	36677170	36677170	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:36677170C>A	uc003jkj.3	+	6	1220	c.744C>A	c.(742-744)GTC>GTA	p.V248V	SLC1A3_uc011cox.1_Silent_p.V141V|SLC1A3_uc010iuy.2_Silent_p.V248V	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	248	Helical; (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	GTCTAGTTGTCTTCTCCATGT	0.498			NA											72	57					1.93348e-29	4.06327e-29	0.00361	1	0
C7	730	broad.mit.edu	37	5	40972553	40972553	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:40972553C>A	uc003jmh.2	+	15	2045	c.1931C>A	c.(1930-1932)CCC>CAC	p.P644H	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	644	Sushi 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CAGAGTCACCCCCAAAAACCT	0.448			NA											14	95					9.31168e-06	1.22305e-05	0.001855	1	0
HEATR7B2	133558	broad.mit.edu	37	5	41038949	41038949	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:41038949G>T	uc003jmj.3	-	21	2593	c.2103C>A	c.(2101-2103)GTC>GTA	p.V701V	HEATR7B2_uc003jmi.3_Silent_p.V256V	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	701							binding			ovary(6)|central_nervous_system(2)	8						AGATGACCATGACATCTGTCT	0.453			NA											8	96					0.00307968	0.00347099	0.00308	1	0
HEATR7B2	133558	broad.mit.edu	37	5	41054884	41054884	+	Silent	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:41054884A>T	uc003jmj.3	-	11	1582	c.1092T>A	c.(1090-1092)GGT>GGA	p.G364G	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	364							binding			ovary(6)|central_nervous_system(2)	8						TACTGAGATCACCCATGACGA	0.363			NA											23	150					0	0	0.004656	0	0
PLCXD3	345557	broad.mit.edu	37	5	41313735	41313735	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:41313735C>A	uc003jmm.1	-	3	1052	c.950G>T	c.(949-951)GGA>GTA	p.G317V		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	317					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						GTTGGCTTCTCCTTCATCAAA	0.403			NA											24	119					1.42536e-11	2.35719e-11	0.004656	1	0
ANKRD55	79722	broad.mit.edu	37	5	55407117	55407117	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:55407117G>T	uc003jqu.2	-	10	1610	c.1458C>A	c.(1456-1458)TGC>TGA	p.C486*	ANKRD55_uc003jqt.2_Nonsense_Mutation_p.C198*	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	485										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				GTAACATCTGGCAGCCAGTTC	0.453			NA											50	128					6.14515e-18	1.18229e-17	0.00361	1	0
SV2C	22987	broad.mit.edu	37	5	75427578	75427578	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:75427578G>T	uc003kei.1	+	2	137	c.3G>T	c.(1-3)ATG>ATT	p.M1I		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	1	Interaction with SYT1 (By similarity).|Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		GAGATAAGATGGAAGACTCTT	0.443			NA											8	25					5.4927e-09	8.41147e-09	0.004482	1	0
DMGDH	29958	broad.mit.edu	37	5	78328549	78328549	+	Missense_Mutation	SNP	G	G	T	rs148916205	byFrequency	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:78328549G>T	uc003kfs.2	-	9	1484	c.1478C>A	c.(1477-1479)CCG>CAG	p.P493Q	DMGDH_uc011cte.1_Missense_Mutation_p.P343Q|DMGDH_uc011ctf.1_Missense_Mutation_p.P292Q|DMGDH_uc011ctg.1_Missense_Mutation_p.P113Q	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	493					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		GAACCAGTGCGGCTGCTCCCA	0.562			NA											48	119					2.29192e-23	4.60405e-23	0.00361	1	0
VCAN	1462	broad.mit.edu	37	5	82834365	82834365	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:82834365C>G	uc003kii.3	+	8	5899	c.5543C>G	c.(5542-5544)ACT>AGT	p.T1848S	VCAN_uc003kij.3_Missense_Mutation_p.T861S|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.T512S	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1848	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GAAACCACCACTGTTTCTTCA	0.507			NA											40	129					0	0	0.007835	0	0
KCNN2	3781	broad.mit.edu	37	5	113831760	113831760	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:113831760G>T	uc003kqo.2	+	8	2078	c.1621G>T	c.(1621-1623)GAG>TAG	p.E541*	KCNN2_uc003kqp.2_Nonsense_Mutation_p.E193*|KCNN2_uc010jcg.2_RNA|uc003kqr.1_Intron	NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	541						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		AGATTTCATTGAGGCTCAGAT	0.552			NA											38	77					3.33393e-15	6.08844e-15	0.004878	1	0
PCDHB6	56130	broad.mit.edu	37	5	140530589	140530589	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:140530589C>T	uc003lir.2	+	1	751	c.751C>T	c.(751-753)CCT>TCT	p.P251S	PCDHB6_uc011dah.1_Missense_Mutation_p.P115S	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	251	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCACAAGTCCCTGAGAACAA	0.527			NA											7	40					0	0	0.001984	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572143	140572143	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:140572143G>T	uc003lix.2	+	1	192	c.18G>T	c.(16-18)TTG>TTT	p.L6F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	6					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAGAGAGTTGTGCTTCCCAA	0.478			NA											30	97					1.08312e-15	2.01572e-15	0.009535	1	0
PCDHB11	56125	broad.mit.edu	37	5	140580956	140580956	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:140580956G>A	uc003liy.2	+	1	1609	c.1609G>A	c.(1609-1611)GGC>AGC	p.G537S	PCDHB11_uc011daj.1_Missense_Mutation_p.G172S	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	537	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACAGACCGCGGCTCCCCGGC	0.672			NA											24	74					0	0	0.003954	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603183	140603183	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:140603183G>T	uc003ljb.2	+	1	106	c.106G>T	c.(106-108)GCA>TCA	p.A36S	PCDHB14_uc011dal.1_Intron	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	36	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTATTCTGTGGCAGAGGAAAC	0.512	Ovarian(141;50 1831 27899 33809 37648)		NA											14	34					0.000219431	0.000259743	0.00245	1	0
PCDHGA1	56114	broad.mit.edu	37	5	140712430	140712430	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:140712430G>T	uc003lji.1	+	1	2179	c.2179G>T	c.(2179-2181)GCT>TCT	p.A727S	PCDHGA1_uc011dan.1_Missense_Mutation_p.A727S	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	727	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTGCTACAGGCTTCGGGAGG	0.667			NA											22	75					1.96292e-10	3.14713e-10	0.010504	1	0
PCDHGB4	8641	broad.mit.edu	37	5	140769608	140769608	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:140769608C>T	uc003lkc.1	+	1	2157	c.2157C>T	c.(2155-2157)CCC>CCT	p.P719P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.P719P	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	719	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCCAGCCCCGCCTCCTGGA	0.562			NA											46	152					0	0	0.002852	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774427	140774427	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:140774427G>T	uc003lkd.1	+	1	2945	c.2047G>T	c.(2047-2049)GAC>TAC	p.D683Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.D683Y	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	683	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTTCGGTCGACCCGAACGA	0.617			NA											7	17					2.0095e-06	2.71242e-06	0.001984	1	0
JAKMIP2	9832	broad.mit.edu	37	5	147027984	147027984	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:147027984T>A	uc003loq.1	-	5	1273	c.891A>T	c.(889-891)AAA>AAT	p.K297N	JAKMIP2_uc011dbx.1_Missense_Mutation_p.K255N|JAKMIP2_uc003lor.1_Missense_Mutation_p.K297N|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.K297N	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	297	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCTTCTAATTTTCTTATAG	0.308			NA											32	126					0	0	0.003271	0	0
SH3TC2	79628	broad.mit.edu	37	5	148408068	148408068	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:148408068C>T	uc003lpu.2	-	11	1379	c.1227G>A	c.(1225-1227)GAG>GAA	p.E409E	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Silent_p.E53E|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Silent_p.E402E|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_Silent_p.E294E	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	409							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGATGCTCCTCCCAGGCTC	0.622			NA											11	43					0	0	0.001855	0	0
FAT2	2196	broad.mit.edu	37	5	150921889	150921889	+	Silent	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:150921889A>T	uc003lue.3	-	9	8812	c.8799T>A	c.(8797-8799)GCT>GCA	p.A2933A	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2933	Extracellular (Potential).|Cadherin 26.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGAAATGTCAGCATCCAGGG	0.498			NA											41	124					0	0	0.007835	0	0
LARP1	23367	broad.mit.edu	37	5	154179189	154179189	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:154179189G>C	uc003lvp.2	+	9	1845	c.1416G>C	c.(1414-1416)GAG>GAC	p.E472D	LARP1_uc003lvo.2_Missense_Mutation_p.E395D|LARP1_uc010jie.1_Missense_Mutation_p.E267D	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	472	HTH La-type RNA-binding.						protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TCGTTGATGAGAAAGTTCGTA	0.473			NA											10	105					0	0	0.000978	0	0
HAVCR2	84868	broad.mit.edu	37	5	156533689	156533689	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:156533689G>C	uc003lwk.1	-	2	487	c.343C>G	c.(343-345)CCA>GCA	p.P115A	HAVCR2_uc003lwl.2_Missense_Mutation_p.P115A	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	115	Ig-like V-type.|Extracellular (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATTATGCCTGGGATTTGGATC	0.428			NA											6	99					0	0	0.001168	0	0
ODZ2	57451	broad.mit.edu	37	5	167653121	167653121	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:167653121G>A	uc010jjd.2	+	24	5110	c.5110G>A	c.(5110-5112)GTG>ATG	p.V1704M	ODZ2_uc003lzr.3_Missense_Mutation_p.V1474M|ODZ2_uc003lzt.3_Missense_Mutation_p.V1077M|ODZ2_uc010jje.2_Missense_Mutation_p.V968M	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CCTGACCAACGTGACGCGCCC	0.527			NA											4	37					0	0	0.009096	0	0
CDHR2	54825	broad.mit.edu	37	5	176003034	176003034	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr5:176003034G>T	uc003mem.1	+	12	1108	c.1042G>T	c.(1042-1044)GAC>TAC	p.D348Y	CDHR2_uc003men.1_Missense_Mutation_p.D348Y	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	348	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGACGTCAATGACCACAAACC	0.577			NA											10	25					1.58986e-06	2.1588e-06	0.008291	1	0
BMP6	654	broad.mit.edu	37	6	7862687	7862687	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:7862687G>C	uc003mxu.3	+	4	1338	c.1160G>C	c.(1159-1161)CGC>CCC	p.R387P		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	387					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					AGTCGTAATCGCTCTACCCAG	0.592			NA											4	69					0	0	0.000602	0	0
GCM2	9247	broad.mit.edu	37	6	10874470	10874470	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:10874470G>T	uc003mzn.3	-	5	1351	c.1279C>A	c.(1279-1281)CCA>ACA	p.P427T	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	427					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				CAGGGTTCTGGATAGACAGAC	0.552			NA											9	39					2.17888e-05	2.75588e-05	0.006214	1	0
KIF13A	63971	broad.mit.edu	37	6	17781518	17781518	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:17781518C>A	uc003ncg.3	-	30	3664	c.3559G>T	c.(3559-3561)GCC>TCC	p.A1187S	KIF13A_uc003ncf.2_Missense_Mutation_p.A1174S|KIF13A_uc003nch.3_Missense_Mutation_p.A1187S|KIF13A_uc003nci.3_Missense_Mutation_p.A1174S|KIF13A_uc003nce.1_5'Flank	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1187					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TGCTCATTGGCACTGAGGTCA	0.463			NA											7	51					7.48243e-07	1.03872e-06	0.006214	1	0
SLC17A4	10050	broad.mit.edu	37	6	25777124	25777124	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:25777124C>T	uc003nfe.2	+	10	1324	c.1205C>T	c.(1204-1206)TCT>TTT	p.S402F	SLC17A4_uc011djx.1_Missense_Mutation_p.S172F|SLC17A4_uc003nff.1_Missense_Mutation_p.S191F|SLC17A4_uc003nfg.2_Missense_Mutation_p.S339F|SLC17A4_uc010jqa.2_Intron	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	402	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						TTGGTGCTGTCTTCTGCCATC	0.537			NA											26	103					0	0	0.004656	0	0
SLC17A4	10050	broad.mit.edu	37	6	25779404	25779404	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:25779404C>A	uc003nfe.2	+	12	1601	c.1482C>A	c.(1480-1482)TTC>TTA	p.F494L	SLC17A4_uc011djx.1_Missense_Mutation_p.F264L|SLC17A4_uc003nfg.2_Missense_Mutation_p.F431L|SLC17A4_uc010jqa.2_3'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	494					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						AGCAGACATTCACCCACCTCT	0.473			NA											18	98					1.2644e-06	1.73779e-06	0.010504	1	0
HIST1H2BK	85236	broad.mit.edu	37	6	27114507	27114507	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:27114507T>A	uc003nix.1	-	1	113	c.71A>T	c.(70-72)AAG>ATG	p.K24M	HIST1H2AH_uc003niz.2_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080593	NP_542160	O60814	H2B1K_HUMAN	histone cluster 1, H2bk	24					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCCGTCCTTCTTCTGCGCCTT	0.602			NA											24	128					0	0	0.003954	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775425	27775425	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:27775425C>G	uc003njl.2	-	1	285	c.260G>C	c.(259-261)CGC>CCC	p.R87P	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	87					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GATGGTCGAGCGCTTGTTGTA	0.632			NA											23	131					0	0	0.003954	0	0
OR2H1	26716	broad.mit.edu	37	6	29429716	29429716	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:29429716T>C	uc003nmi.2	+	3	613	c.170T>C	c.(169-171)ATG>ACG	p.M57T	OR2H1_uc003nmj.1_Missense_Mutation_p.M57T|OR2H1_uc010jri.1_Intron	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CACTCTCCAATGTACTTTTTC	0.517			NA											28	75					0	0	0.00632	0	0
OR2H2	7932	broad.mit.edu	37	6	29556084	29556084	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:29556084C>T	uc003nmr.1	+	1	402	c.363C>T	c.(361-363)TAC>TAT	p.Y121Y	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	121	Cytoplasmic (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGATCGCTACGTGGCTGTCT	0.577			NA											8	89					0	0	0.006214	0	0
CSNK2B	1460	broad.mit.edu	37	6	31638977	31638977	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:31638977G>T	uc003nvs.1	+	7	942	c.602G>T	c.(601-603)AGA>ATA	p.R201I	LY6G5B_uc003nvt.1_Missense_Mutation_p.D35Y	NM_001320	NP_001311	P67870	CSK2B_HUMAN	casein kinase 2, beta polypeptide	Error:Variant_position_missing_in_P67870_after_alignment					adiponectin-mediated signaling pathway|axon guidance|cellular protein complex assembly|negative regulation of cell proliferation|regulation of DNA binding|Wnt receptor signaling pathway	cytosol|nucleus|protein kinase CK2 complex	identical protein binding|protein domain specific binding|protein kinase regulator activity|receptor binding|transcription factor binding				0						CCTCGTAGAAGACCCTTCTGT	0.537			NA											38	185					6.19805e-25	1.27125e-24	0.005524	1	0
HLA-DQB1	3119	broad.mit.edu	37	6	32629750	32629750	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:32629750C>A	uc003obw.2	-	3	737	c.655G>T	c.(655-657)GAG>TAG	p.E219*	HLA-DQB1_uc010juc.1_Nonsense_Mutation_p.E174*|HLA-DQB1_uc003obv.2_Nonsense_Mutation_p.E219*|HLA-DQB1_uc011dqd.1_Nonsense_Mutation_p.E219*|HLA-DQB1_uc011dqe.1_3'UTR	NM_002123	NP_002114	P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ	219	Extracellular (Potential).|Beta-2.|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTACGCCACTCCACGGTGATG	0.537	Esophageal Squamous(151;720 1825 15000 40336 43415)		NA							Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Sj_gren_syndrome				7	49					3.35478e-16	6.38248e-16	0.003163	1	0
ITPR3	3710	broad.mit.edu	37	6	33652441	33652441	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:33652441G>T	uc011drk.1	+	38	5332	c.5113G>T	c.(5113-5115)GAC>TAC	p.D1705Y	ITPR3_uc003oey.2_5'Flank	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1705	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						CTCGCGGGGGGACCTTCCCGA	0.642			NA											18	60					6.94344e-10	1.09524e-09	0.006122	1	0
PI16	221476	broad.mit.edu	37	6	36931029	36931029	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:36931029C>A	uc003ona.2	+	5	1239	c.911C>A	c.(910-912)CCA>CAA	p.P304Q	PI16_uc003omz.1_Intron|PI16_uc003onb.2_Intron|PI16_uc011dts.1_Missense_Mutation_p.P75Q	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	304	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						GATGAGGAGCCAGTTACCTTC	0.527			NA											18	43					1.00905e-13	1.78082e-13	0.008871	1	0
PIM1	5292	broad.mit.edu	37	6	37138394	37138394	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:37138394G>T	uc003onk.2	+	1	473	c.43G>T	c.(43-45)GCG>TCG	p.A15S	PIM1_uc011dtw.1_5'Flank	NM_002648	NP_002639	P11309	PIM1_HUMAN	non-specific serine/threonine protein kinase	106				AP -> RA (in Ref. 2; AAA60089).	cell cycle|cell proliferation|multicellular organismal development|negative regulation of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|protein autophosphorylation	cytoplasm|nucleus|plasma membrane	ATP binding|manganese ion binding|protein binding|protein binding|protein serine/threonine kinase activity|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(102;0.241)		Adenosine monophosphate(DB00131)	CCTGCGCGCCGCGCCCTGCAA	0.721			NA	T	BCL6	NHL								9	35					7.48243e-07	1.03872e-06	0.006214	1	0
PTK7	5754	broad.mit.edu	37	6	43098158	43098158	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:43098158G>A	uc003oub.1	+	4	859	c.661G>A	c.(661-663)GAT>AAT	p.D221N	PTK7_uc003ouc.1_Missense_Mutation_p.D221N|PTK7_uc003oud.1_Missense_Mutation_p.D221N|PTK7_uc003oue.1_Missense_Mutation_p.D221N|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_Intron|PTK7_uc011dve.1_Missense_Mutation_p.D229N|PTK7_uc010jyj.1_5'Flank|PTK7_uc003oua.2_Missense_Mutation_p.D221N	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	221	Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GAGCATTGCTGGTGAGCCTGG	0.612			NA											3	43					0	0	0.004672	0	0
TMEM63B	55362	broad.mit.edu	37	6	44122119	44122119	+	Silent	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:44122119A>T	uc003owr.2	+	23	2308	c.2244A>T	c.(2242-2244)ACA>ACT	p.T748T	TMEM63B_uc003ows.2_Silent_p.T651T|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	748						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			ACACGGAGACAGATACTGTGG	0.622			NA											18	66					0	0	0.00499	0	0
C6orf138	442213	broad.mit.edu	37	6	47846149	47846149	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:47846149G>T	uc011dwm.1	-	3	2465	c.2380C>A	c.(2380-2382)CCC>ACC	p.P794T	C6orf138_uc011dwn.1_Missense_Mutation_p.P558T	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	811						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						TTGGAAGGGGGGAAAAACGTT	0.448			NA											18	90					3.41278e-10	5.40819e-10	0.00499	1	0
C6orf138	442213	broad.mit.edu	37	6	47847065	47847065	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:47847065G>T	uc011dwm.1	-	3	1549	c.1464C>A	c.(1462-1464)GCC>GCA	p.A488A	C6orf138_uc011dwn.1_Silent_p.A252A	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	505						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						GCTGAACCATGGCATAGGAAA	0.468			NA											9	25					1.12685e-05	1.46598e-05	0.004482	1	0
TFAP2D	83741	broad.mit.edu	37	6	50696992	50696992	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:50696992G>C	uc003paf.2	+	5	1362	c.850G>C	c.(850-852)GCT>CCT	p.A284P	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	284	H-S-H (helix-span-helix), dimerization.						DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					ACGGAAAGCAGCTAATGTCAC	0.428			NA											6	152					0	0	0.001984	0	0
PKHD1	5314	broad.mit.edu	37	6	51889991	51889991	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:51889991C>A	uc003pah.1	-	32	4893	c.4617G>T	c.(4615-4617)CAG>CAT	p.Q1539H	PKHD1_uc003pai.2_Missense_Mutation_p.Q1539H	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1539	Extracellular (Potential).|IPT/TIG 10.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AGTCTCTTGTCTGGCACACAA	0.443			NA											21	71					2.54575e-18	4.91171e-18	0.010504	1	0
COL9A1	1297	broad.mit.edu	37	6	71011744	71011744	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:71011744G>A	uc003pfg.3	-	2	207	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	16					axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AGGGTTCCAGGAAACTGCACA	0.448			NA											4	14					0	0	0.001168	0	0
CD109	135228	broad.mit.edu	37	6	74530266	74530266	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:74530266A>G	uc003php.2	+	32	4566	c.4141A>G	c.(4141-4143)ATA>GTA	p.I1381V	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.I1364V|CD109_uc010kba.2_Missense_Mutation_p.I1304V	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1381						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TTCAGTGTCCATAGTGGATTA	0.353			NA											13	42					0	0	0.00245	0	0
MRAP2	112609	broad.mit.edu	37	6	84765060	84765061	+	Nonsense_Mutation	DNP	CT	CT	AA			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	CT	CT	-	-	CT	CT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:84765060_84765061CT>AA	uc003pkg.3	+	2	213_214	c.23_24CT>AA	c.(22-24)TCT>TAA	p.S8*	MRAP2_uc010kbo.2_5'UTR	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	8					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						AGGTTAATTTCTAACAGAACCT	0.431			NA											19	76					0	0	0.004672	0	0
HACE1	57531	broad.mit.edu	37	6	105192070	105192070	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:105192070C>T	uc003pqu.1	-	22	2755	c.2478G>A	c.(2476-2478)GAG>GAA	p.E826E	HACE1_uc010kcy.1_Silent_p.E308E|HACE1_uc010kcz.1_Silent_p.E611E|HACE1_uc010kcx.1_Silent_p.E235E|HACE1_uc003pqt.1_Silent_p.E479E	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	826	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		GAACTCTCTCCTCTTGAGTAA	0.343			NA											14	76					0	0	0.004007	0	0
C6orf182	285753	broad.mit.edu	37	6	109480491	109480491	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:109480491C>T	uc010kdk.2	+	11	1419	c.842C>T	c.(841-843)CCA>CTA	p.P281L	C6orf182_uc003psx.3_Missense_Mutation_p.P281L|C6orf182_uc010kdl.2_Missense_Mutation_p.P281L|C6orf182_uc003psy.3_Missense_Mutation_p.P281L	NM_001083535	NP_001077004	Q8IYX8	CE57L_HUMAN	hypothetical protein LOC285753	281						microtubule|microtubule organizing center					0		all_cancers(87;4.45e-07)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(75;3.25e-08)|all_epithelial(87;0.000254)|Colorectal(196;0.0293)|all_lung(197;0.11)		BRCA - Breast invasive adenocarcinoma(108;0.00123)|Epithelial(106;0.0022)|all cancers(137;0.00405)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)		CATCGTGACCCACATATCCTT	0.418			NA											22	93					0	0	0.00333	0	0
GPRC6A	222545	broad.mit.edu	37	6	117127989	117127989	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:117127989C>T	uc003pxj.1	-	3	901	c.879G>A	c.(877-879)ATG>ATA	p.M293I	GPRC6A_uc003pxk.1_Intron|GPRC6A_uc003pxl.1_Missense_Mutation_p.M293I	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	293	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TATTTATATTCATTTCAATGG	0.353			NA											5	94					0	0	0.000602	0	0
ROS1	6098	broad.mit.edu	37	6	117632220	117632220	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:117632220C>A	uc003pxp.1	-	39	6395	c.6196G>T	c.(6196-6198)GGC>TGC	p.G2066C	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2066	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TAGACACAGCCTTTTGAAATA	0.378			NA	T	GOPC|ROS1	glioblastoma|NSCLC								14	67					3.45872e-05	4.3345e-05	0.004007	1	0
CLVS2	134829	broad.mit.edu	37	6	123332169	123332169	+	Silent	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:123332169T>C	uc003pzi.1	+	3	1298	c.429T>C	c.(427-429)TCT>TCC	p.S143S		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	143	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TCTTACTTTCTTTAGAAGCCA	0.393			NA											16	100					0	0	0.004007	0	0
LAMA2	3908	broad.mit.edu	37	6	129748969	129748969	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:129748969G>A	uc003qbn.2	+	41	6043	c.5938G>A	c.(5938-5940)GAA>AAA	p.E1980K	LAMA2_uc003qbo.2_Missense_Mutation_p.E1980K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1980	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity	p.E1980V(1)		ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GATTCTTAACGAAGCCAAGAA	0.383			NA											8	96					0	0	0.00308	0	0
EYA4	2070	broad.mit.edu	37	6	133783546	133783546	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:133783546G>T	uc003qec.3	+	8	969	c.511G>T	c.(511-513)GGG>TGG	p.G171W	EYA4_uc011ecq.1_Missense_Mutation_p.G117W|EYA4_uc011ecr.1_Missense_Mutation_p.G117W|EYA4_uc003qed.3_Missense_Mutation_p.G171W|EYA4_uc003qee.3_Missense_Mutation_p.G148W|EYA4_uc011ecs.1_Missense_Mutation_p.G171W|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	171					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TCAGTATTCGGGGATGCAGCA	0.473	Melanoma(57;398 1237 3528 4702 7415)		NA											29	100					1.39806e-14	2.51945e-14	0.008361	1	0
ECT2L	345930	broad.mit.edu	37	6	139170499	139170499	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:139170499C>A	uc003qif.1	+	7	1100	c.997C>A	c.(997-999)CTG>ATG	p.L333M	ECT2L_uc011edq.1_Missense_Mutation_p.L264M	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	333					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						AGAAAAAGCTCTGGATGGGCA	0.463			NA											18	71					9.7654e-05	0.000118679	0.007413	1	0
STX11	8676	broad.mit.edu	37	6	144508591	144508591	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:144508591G>T	uc003qks.3	+	2	1019	c.827G>T	c.(826-828)CGG>CTG	p.R276L		NM_003764	NP_003755	O75558	STX11_HUMAN	syntaxin 11	276					cellular membrane fusion|intracellular protein transport|vesicle-mediated transport	Golgi apparatus|membrane	SNAP receptor activity			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(155;2.17e-06)|GBM - Glioblastoma multiforme(68;0.0492)		AACCCCTGCCGGACCCTCTGC	0.657			NA							Familial_Hemophagocytic_Lymphohistiocytosis				7	22					2.0095e-06	2.71242e-06	0.001984	1	0
FNDC1	84624	broad.mit.edu	37	6	159655446	159655446	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:159655446G>C	uc010kjv.2	+	11	4102	c.3902G>C	c.(3901-3903)AGG>ACG	p.R1301T	FNDC1_uc010kjw.1_Missense_Mutation_p.R1186T	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1301						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TTGCGCCAGAGGATGATGCAT	0.587			NA											4	35					0	0	0.000602	0	0
WTAP	9589	broad.mit.edu	37	6	160176510	160176510	+	Nonsense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:160176510C>G	uc003qsl.2	+	8	1280	c.1058C>G	c.(1057-1059)TCA>TGA	p.S353*	WTAP_uc003qso.2_Nonsense_Mutation_p.S234*	NM_004906	NP_004897	Q15007	FL2D_HUMAN	Wilms' tumour 1-associating protein isoform 1	353					cell cycle|mRNA processing|RNA splicing	nuclear membrane|nucleolus					0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.75e-18)|BRCA - Breast invasive adenocarcinoma(81;5.93e-06)		ACACACCAATCAAATGACACA	0.502			NA											13	90					0	0	0.001368	0	0
LPA	4018	broad.mit.edu	37	6	160977168	160977168	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:160977168C>A	uc003qtl.2	-	31	4982	c.4862G>T	c.(4861-4863)GGC>GTC	p.G1621V		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4129	Kringle 37.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ATAACTCTGGCCATTACCATG	0.488			NA											30	128					3.1745e-13	5.46141e-13	0.008361	1	0
TCP10L2	401285	broad.mit.edu	37	6	167591903	167591903	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:167591903C>G	uc010kkp.2	+	5	661	c.530C>G	c.(529-531)TCG>TGG	p.S177W		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	177											0						AGAATTAACTCGGGGAAAACA	0.433			NA											6	45					0	0	0.004482	0	0
KIF25	3834	broad.mit.edu	37	6	168443325	168443325	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:168443325C>A	uc003qwk.1	+	8	1176	c.914C>A	c.(913-915)GCT>GAT	p.A305D	KIF25_uc003qwl.1_Intron	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	305					microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		GTCCTGGGGGCTTTGTTGGAG	0.652			NA											15	49					2.61681e-11	4.2758e-11	0.00245	1	0
CYP2W1	54905	broad.mit.edu	37	7	1027059	1027059	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:1027059C>A	uc003sjq.1	+	7	1048	c.1035C>A	c.(1033-1035)CCC>CCA	p.P345P	CYP2W1_uc003sjr.1_Silent_p.P345P	NM_017781	NP_060251	Q8TAV3	CP2W1_HUMAN	cytochrome P450, family 2, subfamily W,	345					xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.74e-15)		AGGCTCTGCCCTACACAAGCG	0.721			NA											4	9					0.000602214	0.00070551	0.000602	1	0
DAGLB	221955	broad.mit.edu	37	7	6449644	6449644	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:6449644G>A	uc003sqa.2	-	15	2013	c.1843C>T	c.(1843-1845)CAC>TAC	p.H615Y	DAGLB_uc003spy.2_Missense_Mutation_p.H161Y|DAGLB_uc003spz.2_Missense_Mutation_p.H312Y|DAGLB_uc011jwt.1_Missense_Mutation_p.H429Y|DAGLB_uc011jwu.1_Missense_Mutation_p.H486Y|DAGLB_uc003sqb.2_Missense_Mutation_p.H334Y|DAGLB_uc003sqc.2_Missense_Mutation_p.H334Y|DAGLB_uc011jwv.1_RNA|DAGLB_uc003sqd.3_Missense_Mutation_p.H574Y	NM_139179	NP_631918	Q8NCG7	DGLB_HUMAN	diacylglycerol lipase, beta isoform 1	615	Cytoplasmic (Potential).				lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.102)		GCGCTATAGTGAGCAGCAGAG	0.597			NA											5	66					0	0	0.001168	0	0
DGKB	1607	broad.mit.edu	37	7	14758281	14758281	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:14758281G>T	uc003ssz.2	-	5	539	c.352C>A	c.(352-354)CCT>ACT	p.P118T	DGKB_uc011jxt.1_Missense_Mutation_p.P111T|DGKB_uc003sta.2_Missense_Mutation_p.P118T|DGKB_uc011jxu.1_Missense_Mutation_p.P118T|DGKB_uc011jxv.1_Missense_Mutation_p.P118T	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	118					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GTCCGGGGAGGGGTGATGGCA	0.383			NA											11	34					1.58986e-06	2.1588e-06	0.008291	1	0
HDAC9	9734	broad.mit.edu	37	7	18625115	18625115	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:18625115G>A	uc003suh.2	+	2	275	c.234G>A	c.(232-234)CAG>CAA	p.Q78Q	HDAC9_uc003sue.2_Silent_p.Q78Q|HDAC9_uc011jyd.1_Silent_p.Q78Q|HDAC9_uc003sui.2_Silent_p.Q78Q|HDAC9_uc003suj.2_Silent_p.Q78Q|HDAC9_uc011jya.1_Silent_p.Q119Q|HDAC9_uc003sua.1_Silent_p.Q97Q|HDAC9_uc011jyb.1_Silent_p.Q78Q|HDAC9_uc003sud.1_Silent_p.Q78Q|HDAC9_uc011jyc.1_Silent_p.Q78Q|HDAC9_uc003suf.1_Silent_p.Q106Q|HDAC9_uc010kud.1_Silent_p.Q78Q|HDAC9_uc011jye.1_Silent_p.Q47Q|HDAC9_uc011jyf.1_Silent_p.Q47Q	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	78					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TGACACGGCAGCACCAGGCTC	0.483			NA											8	35					0	0	0.006214	0	0
SP8	221833	broad.mit.edu	37	7	20825372	20825372	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:20825372C>A	uc003suy.2	-	3	251	c.10G>T	c.(10-12)GCT>TCT	p.A4S	SP8_uc003suz.2_Missense_Mutation_p.A22S	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TTACAGGTAGCGGCAAGCATG	0.627			NA											18	31					1.67942e-08	2.51544e-08	0.006122	1	0
CREB5	9586	broad.mit.edu	37	7	28848929	28848929	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:28848929G>A	uc003szq.2	+	9	1542	c.1152G>A	c.(1150-1152)CGG>CGA	p.R384R	CREB5_uc003szo.2_Silent_p.R351R|CREB5_uc003szr.2_Silent_p.R377R|CREB5_uc003szs.2_Silent_p.R245R	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	384	Basic motif.				positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						TTCTGGAACGGAACCGGGCAG	0.592			NA											13	49					0	0	0.001855	0	0
KBTBD2	25948	broad.mit.edu	37	7	32909054	32909054	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:32909054T>A	uc003tdb.2	-	4	2434	c.1775A>T	c.(1774-1776)GAA>GTA	p.E592V	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	592											0			GBM - Glioblastoma multiforme(11;0.0499)			TGGAGACTCTTCAAGGCAGGA	0.483			NA											29	84					0	0	0.007291	0	0
DPY19L1	23333	broad.mit.edu	37	7	34971203	34971203	+	Silent	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:34971203T>A	uc003tem.3	-	22	2155	c.2010A>T	c.(2008-2010)CTA>CTT	p.L670L	DPY19L1_uc003tel.1_RNA	NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	670						integral to membrane					0						TTACAACTTCTAGGACTTTGT	0.413			NA											22	87					0	0	0.004656	0	0
ADCY1	107	broad.mit.edu	37	7	45650001	45650001	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:45650001G>T	uc003tne.3	+	3	831	c.813G>T	c.(811-813)CTG>CTT	p.L271L	ADCY1_uc003tnd.2_Silent_p.L46L	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	271	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TGAGCCTCCTGCCCCGGAACG	0.592			NA											22	95					2.39556e-15	4.38652e-15	0.00278	1	0
SUN3	256979	broad.mit.edu	37	7	48026950	48026950	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:48026950C>A	uc003tof.2	-	11	1148	c.1051G>T	c.(1051-1053)GGC>TGC	p.G351C	SUN3_uc010kyq.2_Missense_Mutation_p.G263C|SUN3_uc003tog.2_Missense_Mutation_p.G351C|SUN3_uc011kcf.1_Missense_Mutation_p.G339C	NM_152782	NP_689995	Q8TAQ9	SUN3_HUMAN	Sad1 and UNC84 domain containing 1	351	SUN.					integral to membrane				central_nervous_system(1)	1						CCTGGTGTGCCATGGACCCTG	0.413			NA											32	146					6.97489e-18	1.33816e-17	0.004878	1	0
COBL	23242	broad.mit.edu	37	7	51095655	51095655	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:51095655G>A	uc003tpr.3	-	10	3323	c.3138C>T	c.(3136-3138)CAC>CAT	p.H1046H	COBL_uc003tps.2_Silent_p.H1103H|COBL_uc011kcl.1_Silent_p.H1046H|COBL_uc003tpp.3_Silent_p.H832H|COBL_uc003tpq.3_Silent_p.H987H|COBL_uc003tpo.3_Silent_p.H588H	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1046										skin(3)|ovary(2)	5	Glioma(55;0.08)					AAGGCTCGCCGTGGCCTGGGG	0.587	NSCLC(189;2119 2138 12223 30818 34679)		NA											12	51					0	0	0.000978	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73927187	73927187	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:73927187G>T	uc003uaq.2	+	3	544	c.151G>T	c.(151-153)GAG>TAG	p.E51*	GTF2IRD1_uc010lbq.2_Nonsense_Mutation_p.E51*|GTF2IRD1_uc003uap.2_Nonsense_Mutation_p.E51*|GTF2IRD1_uc003uar.1_Nonsense_Mutation_p.E51*	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	51						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						ACTGAACGCCGAGGTGGCCTG	0.597			NA											7	44					8.12818e-05	9.89581e-05	0.001984	1	0
CACNA2D1	781	broad.mit.edu	37	7	81599236	81599236	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:81599236C>A	uc003uhr.1	-	28	2525	c.2269G>T	c.(2269-2271)GAT>TAT	p.D757Y	CACNA2D1_uc011kgy.1_Intron	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	769	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	TTATCATTATCTAGGCTCCTT	0.338			NA											15	62					2.23348e-06	3.00289e-06	0.004007	1	0
GRM3	2913	broad.mit.edu	37	7	86468419	86468419	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:86468419T>A	uc003uid.2	+	4	2688	c.1589T>A	c.(1588-1590)ATT>AAT	p.I530N	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.I402N|GRM3_uc010leh.2_Missense_Mutation_p.I122N	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	530	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGCTGCTGGATTTGCATCCCC	0.537	GBM(52;969 1098 3139 52280)		NA											7	141					0	0	0.00308	0	0
CALCR	799	broad.mit.edu	37	7	93072917	93072917	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:93072917C>G	uc003umv.1	-	10	1164	c.903G>C	c.(901-903)TGG>TGC	p.W301C	CALCR_uc011kia.1_Missense_Mutation_p.W81C|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.W267C|CALCR_uc003umw.2_Missense_Mutation_p.W267C	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	283	Helical; Name=4; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	AATACATACCCCAGCCCAAGA	0.438			NA											12	53					0	0	0.000978	0	0
NPTX2	4885	broad.mit.edu	37	7	98254454	98254454	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:98254454C>A	uc003upl.2	+	3	1041	c.864C>A	c.(862-864)CCC>CCA	p.P288P		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	288	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			GCAACAACCCCATCGAGCTGC	0.667			NA											11	57					1.08611e-07	1.55843e-07	0.000978	1	0
ZSCAN21	7589	broad.mit.edu	37	7	99654701	99654701	+	Silent	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:99654701G>C	uc003uso.2	+	2	216	c.72G>C	c.(70-72)CTG>CTC	p.L24L	ZSCAN21_uc011kje.1_Silent_p.L23L|ZSCAN21_uc003usn.1_Silent_p.L23L	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	24					positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TGGGGCCTCTGATGGTAAAAG	0.542			NA											8	247					0	0	0.00308	0	0
SERPINE1	5054	broad.mit.edu	37	7	100771685	100771685	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:100771685C>G	uc003uxt.2	+	2	159	c.11C>G	c.(10-12)TCT>TGT	p.S4C	SERPINE1_uc011kkj.1_Missense_Mutation_p.S4C	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	4					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	ATGCAGATGTCTCCAGCCCTC	0.622			NA											18	68					0	0	0.006122	0	0
SLC26A5	375611	broad.mit.edu	37	7	103051925	103051925	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:103051925C>G	uc003vbz.2	-	6	748	c.512G>C	c.(511-513)AGA>ACA	p.R171T	SLC26A5_uc003vbt.1_Missense_Mutation_p.R171T|SLC26A5_uc003vbu.1_Missense_Mutation_p.R171T|SLC26A5_uc003vbv.1_Missense_Mutation_p.R171T|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.R171T|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	171	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CAAGGCATCTCTGGCCTCTGT	0.448			NA											31	77					0	0	0.009535	0	0
LAMB1	3912	broad.mit.edu	37	7	107564713	107564713	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:107564713A>T	uc003vew.2	-	33	5521	c.5186T>A	c.(5185-5187)CTT>CAT	p.L1729H	LAMB1_uc003vev.2_Missense_Mutation_p.L1753H|LAMB1_uc003veu.2_Missense_Mutation_p.L212H	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1729	Potential.|Domain I.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTGAGCTAAAAGAGTTTTTGC	0.333			NA											16	74					0	0	0.008871	0	0
LAMB1	3912	broad.mit.edu	37	7	107626637	107626637	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:107626637G>C	uc003vew.2	-	6	930	c.595C>G	c.(595-597)CCC>GCC	p.P199A	LAMB1_uc003vev.2_Missense_Mutation_p.P223A|LAMB1_uc003vex.2_Missense_Mutation_p.P199A|LAMB1_uc010ljn.1_Missense_Mutation_p.P285A	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	199	Laminin N-terminal.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCAGTTGAGGGTTCAATGTCA	0.393			NA											14	65					0	0	0.003163	0	0
C7orf60	154743	broad.mit.edu	37	7	112555434	112555434	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:112555434C>A	uc003vgo.1	-	2	356	c.229G>T	c.(229-231)GCA>TCA	p.A77S	C7orf60_uc011kms.1_Missense_Mutation_p.A103S	NM_152556	NP_689769	Q1RMZ1	CG060_HUMAN	hypothetical protein LOC154743	77										ovary(2)|skin(1)	3						TTTTTCATTGCAACGGCATAT	0.348			NA											18	70					3.41278e-10	5.40819e-10	0.00499	1	0
KCND2	3751	broad.mit.edu	37	7	120387741	120387741	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:120387741C>A	uc003vjj.1	+	6	2687	c.1722C>A	c.(1720-1722)TCC>TCA	p.S574S		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	574	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCAGCCGATCCAGTTTAAATG	0.313			NA											12	41					3.07112e-06	4.10484e-06	0.000978	1	0
C7orf58	79974	broad.mit.edu	37	7	120911459	120911459	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:120911459G>A	uc003vjq.3	+	22	3290	c.2843G>A	c.(2842-2844)GGG>GAG	p.G948E		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	948						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TTTCTACAGGGGAAGTGTGGA	0.323			NA											27	125					0	0	0.004656	0	0
C7orf58	79974	broad.mit.edu	37	7	120935692	120935692	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:120935692A>G	uc003vjq.3	+	23	3514	c.3067A>G	c.(3067-3069)AAA>GAA	p.K1023E		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	1023						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GTGTGCAAATAAAAGGACTAT	0.483			NA											18	74					0	0	0.007413	0	0
LMOD2	442721	broad.mit.edu	37	7	123302771	123302771	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:123302771C>A	uc003vky.2	+	2	1288	c.1131C>A	c.(1129-1131)ACC>ACA	p.T377T		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	377						cytoskeleton	actin binding|tropomyosin binding				0						ATCTTAGGACCAAAGTCTGGC	0.468			NA											18	87					0.000132079	0.000159663	0.008871	1	0
AKR1B15	441282	broad.mit.edu	37	7	134260652	134260652	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:134260652G>T	uc011kpr.1	+	8	1015	c.716G>T	c.(715-717)AGC>ATC	p.S239I	AKR1B15_uc011kps.1_Missense_Mutation_p.S211I	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	239	NADP (By similarity).						oxidoreductase activity			ovary(1)	1						ACGGCCTACAGCCCCCTGGGC	0.483			NA											8	44					2.17888e-05	2.75588e-05	0.006214	1	0
CLCN1	1180	broad.mit.edu	37	7	143029957	143029957	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:143029957C>A	uc003wcr.1	+	12	1479	c.1392C>A	c.(1390-1392)TTC>TTA	p.F464L	CLCN1_uc011ktc.1_Intron	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	464	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TTCTCTTCTTCGTCATGAAGG	0.502			NA											41	114					3.38236e-24	6.87545e-24	0.006999	1	0
TAS2R60	338398	broad.mit.edu	37	7	143141281	143141281	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:143141281C>G	uc011ktg.1	+	1	736	c.736C>G	c.(736-738)CTG>GTG	p.L246V	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	246	Helical; Name=6; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					CATAAAGGCTCTGCTGGCTCT	0.478			NA											23	99					0	0	0.001882	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144059824	144059824	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:144059824G>T	uc003wel.2	+	2	180	c.62G>T	c.(61-63)AGC>ATC	p.S21I	ARHGEF5_uc003wek.2_Missense_Mutation_p.S21I	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	21					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					GAGGAATTCAGCATTATCCCT	0.532			NA											13	168					2.89027e-11	4.70013e-11	0.002299	1	0
CNTNAP2	26047	broad.mit.edu	37	7	146741074	146741074	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:146741074C>A	uc003weu.1	+	4	994	c.478C>A	c.(478-480)CGC>AGC	p.R160S		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	160	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCGCTATGTGCGCATAGTGCC	0.428			NA								HNSCC(39;0.1)			32	105					2.81731e-10	4.49585e-10	0.002096	1	0
WDR86	349136	broad.mit.edu	37	7	151093213	151093213	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:151093213G>T	uc003wkb.2	-	3	824	c.375C>A	c.(373-375)GAC>GAA	p.D125E	WDR86_uc003wka.2_Missense_Mutation_p.D83E|WDR86_uc011kvk.1_Missense_Mutation_p.D125E|WDR86_uc003wkc.2_5'UTR	NM_198285	NP_938026	Q86TI4	WDR86_HUMAN	WD repeat domain 86	125	WD 3.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00419)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCTGCCCCTTGTCCACACTCC	0.652			NA											10	41					9.70103e-10	1.52668e-09	0.008291	1	0
DPP6	1804	broad.mit.edu	37	7	154237702	154237702	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:154237702C>A	uc003wlk.2	+	4	672	c.543C>A	c.(541-543)GGC>GGA	p.G181G	DPP6_uc003wli.2_Silent_p.G117G|DPP6_uc003wlj.2_Silent_p.G181G|DPP6_uc003wlm.2_Silent_p.G119G|DPP6_uc011kvq.1_Silent_p.G119G	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	181	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TAATAGAAGGCAAAAAAATTG	0.338	NSCLC(125;1384 1783 2490 7422 34254)		NA											4	16					0.00909568	0.00997167	0.009096	1	0
CNPY1	285888	broad.mit.edu	37	7	155295764	155295764	+	Nonstop_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr7:155295764T>C	uc003wmc.1	-	4	423	c.278A>G	c.(277-279)TAG>TGG	p.*93W		NM_001103176	NP_001096646	Q3B7I2	CNPY1_HUMAN	canopy 1 homolog	93											0	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		ACGGCACTCCTAGAGCTCAGT	0.378			NA											9	24					0	0	0.008291	0	0
DLGAP2	9228	broad.mit.edu	37	8	1624783	1624783	+	Nonsense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:1624783C>T	uc003wpl.2	+	8	2144	c.2047C>T	c.(2047-2049)CGA>TGA	p.R683*	DLGAP2_uc003wpm.2_Nonsense_Mutation_p.R669*	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	762					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		AGATGAGAAGCGGTAACTCAG	0.582			NA											5	9					0	0	0.000602	0	0
CSMD1	64478	broad.mit.edu	37	8	3166007	3166007	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:3166007C>A	uc011kwk.1	-	24	4043	c.3653G>T	c.(3652-3654)TGT>TTT	p.C1218F	CSMD1_uc011kwj.1_Missense_Mutation_p.C610F|CSMD1_uc003wqe.2_Missense_Mutation_p.C374F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1218	Extracellular (Potential).|Sushi 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CGGATCCTCACATTTTACCAG	0.478			NA											6	12					0.00116845	0.00134126	0.001168	1	0
BLK	640	broad.mit.edu	37	8	11412354	11412354	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:11412354G>A	uc003wty.2	+	7	1156	c.575G>A	c.(574-576)CGG>CAG	p.R192Q	BLK_uc003wtz.2_Missense_Mutation_p.R121Q	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	192	SH2.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		ATCTCCCCCCGGATCACCTTC	0.597			NA											14	24					0	0	0.003163	0	0
RB1CC1	9821	broad.mit.edu	37	8	53586509	53586509	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:53586509C>G	uc003xre.3	-	7	1456	c.898G>C	c.(898-900)GAT>CAT	p.D300H	RB1CC1_uc003xrf.3_Missense_Mutation_p.D300H	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	300					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				AAGGGCAGATCACCATCTTTA	0.388	GBM(180;1701 2102 13475 42023 52570)		NA											28	89					0	0	0.005443	0	0
RP1	6101	broad.mit.edu	37	8	55537288	55537288	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:55537288A>T	uc003xsd.1	+	4	994	c.846A>T	c.(844-846)AAA>AAT	p.K282N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	282					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTTCTGAGAAAACACATAATA	0.323	Colon(91;1014 1389 7634 14542 40420)		NA											20	52					0	0	0.007413	0	0
PREX2	80243	broad.mit.edu	37	8	69028086	69028086	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:69028086G>A	uc003xxv.1	+	26	3272	c.3245G>A	c.(3244-3246)AGC>AAC	p.S1082N		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1082					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GAAAGAAACAGCAAACGGGTA	0.398			NA											29	74					0	0	0.002445	0	0
SULF1	23213	broad.mit.edu	37	8	70539497	70539497	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:70539497T>C	uc010lza.1	+	16	2620	c.1903T>C	c.(1903-1905)TCG>CCG	p.S635P	SULF1_uc003xyd.2_Missense_Mutation_p.S635P|SULF1_uc003xye.2_Missense_Mutation_p.S635P|SULF1_uc003xyf.2_Missense_Mutation_p.S635P|SULF1_uc003xyg.2_Missense_Mutation_p.S635P|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_5'Flank	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	635					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			ACTGTACCAATCGGCCAGAGC	0.418			NA											7	34					0	0	0.004482	0	0
PRDM14	63978	broad.mit.edu	37	8	70981559	70981559	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:70981559C>A	uc003xym.2	-	2	739	c.537G>T	c.(535-537)GAG>GAT	p.E179D		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			TGGGACCATCCTCTGACTGCT	0.577	NSCLC(129;99 1813 5906 40656 46114)		NA											9	25					0.00448238	0.00499424	0.004482	1	0
ZFHX4	79776	broad.mit.edu	37	8	77765793	77765793	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:77765793C>T	uc003yav.2	+	10	6888	c.6501C>T	c.(6499-6501)CCC>CCT	p.P2167P	ZFHX4_uc003yau.1_Silent_p.P2212P|ZFHX4_uc003yaw.1_Silent_p.P2167P	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2167						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATCCACAGCCCACCTCTTTAG	0.373			NA								HNSCC(33;0.089)			13	60					0	0	0.001368	0	0
RRM2B	50484	broad.mit.edu	37	8	103231152	103231152	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:103231152C>A	uc003ykn.2	-	6	818	c.574G>T	c.(574-576)GCT>TCT	p.A192S	RRM2B_uc003yko.2_RNA|RRM2B_uc010mbv.1_Missense_Mutation_p.A140S|RRM2B_uc010mbw.1_Intron|RRM2B_uc010mbx.1_Intron|RRM2B_uc010mby.1_Intron	NM_015713	NP_056528	Q7LG56	RIR2B_HUMAN	ribonucleotide reductase M2 B (TP53 inducible)	192					deoxyribonucleoside diphosphate metabolic process|DNA repair|nucleobase, nucleoside and nucleotide interconversion	nucleoplasm	ribonucleoside-diphosphate reductase activity|transition metal ion binding			ovary(2)	2	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000728)			CCTTCTACAGCAGCAAAGGCC	0.368			NA						Direct_reversal_of_damage|Modulation_of_nucleotide_pools					21	130					5.35047e-06	7.10967e-06	0.00333	1	0
ATAD2	29028	broad.mit.edu	37	8	124383531	124383531	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:124383531C>A	uc003yqh.3	-	5	692	c.584G>T	c.(583-585)CGT>CTT	p.R195L	ATAD2_uc011lii.1_5'UTR|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.R195L	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TCGCTGTCTACGCATCTTCTT	0.313			NA											5	38					8.12818e-05	9.89581e-05	0.001984	1	0
BAI1	575	broad.mit.edu	37	8	143561100	143561100	+	Nonsense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:143561100G>A	uc003ywm.2	+	8	1956	c.1773G>A	c.(1771-1773)TGG>TGA	p.W591*		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	591	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CTGTGATCTGGAAGGAGACCC	0.642			NA											12	76					0	0	0.00245	0	0
BAI1	575	broad.mit.edu	37	8	143561106	143561106	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:143561106G>A	uc003ywm.2	+	8	1962	c.1779G>A	c.(1777-1779)GAG>GAA	p.E593E		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	593	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					TCTGGAAGGAGACCCCAGCGG	0.642			NA											12	75					0	0	0.00245	0	0
BAI1	575	broad.mit.edu	37	8	143562615	143562615	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:143562615G>C	uc003ywm.2	+	9	2012	c.1829G>C	c.(1828-1830)GGA>GCA	p.G610A		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	610	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GTCTCCCCAGGACTCATCCTG	0.622			NA											8	38					0	0	0.00308	0	0
BAI1	575	broad.mit.edu	37	8	143562715	143562715	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:143562715G>C	uc003ywm.2	+	9	2112	c.1929G>C	c.(1927-1929)CAG>CAC	p.Q643H		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	643	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GAAACATCCAGATGATGGTGA	0.607			NA											9	34					0	0	0.008291	0	0
DOCK8	81704	broad.mit.edu	37	9	328021	328021	+	Splice_Site	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:328021G>C	uc003zgf.2	+	9	1007	c.895_splice	c.e9-1	p.I299_splice	DOCK8_uc011lls.1_Splice_Site_p.I299_splice|DOCK8_uc010mgu.2_Splice_Site|DOCK8_uc010mgv.2_Splice_Site_p.I231_splice|DOCK8_uc003zgg.2_Splice_Site_p.I231_splice|DOCK8_uc003zgh.2_Splice_Site	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8						blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		CTCATTTACAGATCTCAGAAA	0.408			NA											21	46					0	0	0.001882	0	0
PTPRD	5789	broad.mit.edu	37	9	8449761	8449761	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:8449761G>T	uc003zkk.2	-	33	4663	c.3952C>A	c.(3952-3954)CCT>ACT	p.P1318T	PTPRD_uc003zkp.2_Missense_Mutation_p.P912T|PTPRD_uc003zkq.2_Missense_Mutation_p.P911T|PTPRD_uc003zkr.2_Missense_Mutation_p.P902T|PTPRD_uc003zks.2_Missense_Mutation_p.P897T|PTPRD_uc003zkl.2_Missense_Mutation_p.P1309T|PTPRD_uc003zkm.2_Missense_Mutation_p.P1305T|PTPRD_uc003zkn.2_Missense_Mutation_p.P907T|PTPRD_uc003zko.2_Missense_Mutation_p.P908T	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1318	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGTTCTACAGGGTCTGTTGGG	0.448			NA								TSP Lung(15;0.13)			38	118					7.53189e-24	1.52198e-23	0.007835	1	0
C9orf72	203228	broad.mit.edu	37	9	27561600	27561600	+	Silent	SNP	A	A	G	rs149801256		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:27561600A>G	uc003zqq.2	-	5	745	c.648T>C	c.(646-648)CAT>CAC	p.H216H	C9orf72_uc003zqr.1_Silent_p.H216H	NM_018325	NP_060795	Q96LT7	CI072_HUMAN	hypothetical protein LOC203228 isoform a	216										ovary(3)|central_nervous_system(1)	4		all_neural(11;7.57e-10)		LUSC - Lung squamous cell carcinoma(38;0.0001)|Lung(218;0.00016)		GAAAGCCTTCATGACAGCTGT	0.328			NA											12	30					0	0	0.001855	0	0
RECK	8434	broad.mit.edu	37	9	36118894	36118894	+	Silent	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:36118894C>G	uc003zyv.2	+	18	2480	c.2394C>G	c.(2392-2394)TCC>TCG	p.S798S	RECK_uc003zyw.2_Silent_p.S670S|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	798						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			AGCACAGCTCCGTCGCCGAGT	0.607			NA											6	45					0	0	0.001168	0	0
RNF38	152006	broad.mit.edu	37	9	36369894	36369894	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:36369894C>T	uc003zzh.2	-	4	583	c.392G>A	c.(391-393)CGT>CAT	p.R131H	RNF38_uc003zzi.2_Missense_Mutation_p.R81H|RNF38_uc003zzj.2_Missense_Mutation_p.R48H|RNF38_uc003zzk.2_Missense_Mutation_p.R48H|RNF38_uc003zzl.2_Missense_Mutation_p.R55H|RNF38_uc003zzm.2_Missense_Mutation_p.R48H	NM_022781	NP_073618	Q9H0F5	RNF38_HUMAN	ring finger protein 38 isoform 1	131							zinc ion binding			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			TCGAGACAGACGATCCCTTCT	0.453			NA											6	27					0	0	0.001168	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607683	84607683	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:84607683G>A	uc004amn.2	+	4	2345	c.2298G>A	c.(2296-2298)ATG>ATA	p.M766I		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	766						integral to membrane					0						TGCTTTCCATGGAGAATGTGG	0.473			NA											9	41					0	0	0.008291	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535409	90535409	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:90535409C>A	uc010mqi.2	+	4	616	c.587C>A	c.(586-588)TCC>TAC	p.S196Y	FAM75C1_uc004apq.3_Missense_Mutation_p.S179Y	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CTAAGTGCCTCCCAGCCACCA	0.617			NA											66	163					9.4991e-31	2.01487e-30	0.00361	1	0
SEMA4D	10507	broad.mit.edu	37	9	91994486	91994486	+	Silent	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:91994486C>G	uc004aqo.1	-	18	2294	c.1722G>C	c.(1720-1722)CTG>CTC	p.L574L	SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Silent_p.L572L	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	574	Ig-like C2-type.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						GGGAGCATTTCAGTTCCGCTG	0.483			NA											19	180					0	0	0.001882	0	0
NOL8	55035	broad.mit.edu	37	9	95069173	95069173	+	Missense_Mutation	SNP	T	T	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:95069173T>G	uc004arv.2	-	11	3157	c.2820A>C	c.(2818-2820)AAA>AAC	p.K940N	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Missense_Mutation_p.K172N|NOL8_uc011ltw.1_Missense_Mutation_p.K872N	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	940					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						CATACTTAAATTTCTTAGCAG	0.333			NA											38	92					0	0	0.009718	0	0
C9orf43	257169	broad.mit.edu	37	9	116186556	116186556	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:116186556C>T	uc004bho.3	+	8	1163	c.767C>T	c.(766-768)TCT>TTT	p.S256F	C9orf43_uc004bhp.2_Missense_Mutation_p.S256F	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	256											0						AGTGTGATTTCTTCTAAGATG	0.433			NA											21	170					0	0	0.002299	0	0
DBC1	1620	broad.mit.edu	37	9	121976385	121976385	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:121976385G>A	uc004bkc.2	-	6	1190	c.734C>T	c.(733-735)TCG>TTG	p.S245L	DBC1_uc004bkd.2_Missense_Mutation_p.S245L	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	245	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTCAAGGCCGACTGGACAAA	0.478			NA											6	50					0	0	0.001168	0	0
TTLL11	158135	broad.mit.edu	37	9	124751430	124751430	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:124751430C>A	uc004blt.1	-	4	1771	c.1583G>T	c.(1582-1584)GGC>GTC	p.G528V	TTLL11_uc011lyl.1_Intron|TTLL11_uc004blr.2_Intron|TTLL11_uc011lym.1_Intron|TTLL11_uc004blu.1_3'UTR	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	528	TTL.				protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						CCTCTTGAGGCCGGTCAAGGC	0.557			NA											24	51					7.88262e-20	1.54265e-19	0.00333	1	0
OR1N2	138882	broad.mit.edu	37	9	125315572	125315572	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:125315572C>G	uc011lyx.1	+	1	124	c.124C>G	c.(124-126)CCT>GCT	p.P42A		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	42	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						AGAGGAGCAGCCTCTTCTGTT	0.527			NA											20	60					0	0	0.007413	0	0
PKN3	29941	broad.mit.edu	37	9	131469303	131469303	+	Splice_Site	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:131469303G>T	uc004bvw.2	+	5	1044	c.651_splice	c.e5+1	p.E217_splice	PKN3_uc010myh.2_Splice_Site_p.E217_splice|PKN3_uc011mbk.1_Splice_Site	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta						signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						ACTGGCTGAGGTCAGGCCCCA	0.612			NA											18	41					2.37509e-13	4.1068e-13	0.010504	1	0
ADAMTS13	11093	broad.mit.edu	37	9	136310172	136310172	+	Missense_Mutation	SNP	A	A	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:136310172A>T	uc004cdv.3	+	20	3053	c.2609A>T	c.(2608-2610)CAT>CTT	p.H870L	ADAMTS13_uc004cdp.3_Missense_Mutation_p.H97L|ADAMTS13_uc004cdt.1_Missense_Mutation_p.H870L|ADAMTS13_uc004cdu.1_Missense_Mutation_p.H839L|ADAMTS13_uc004cdw.3_Missense_Mutation_p.H870L|ADAMTS13_uc004cdx.3_Missense_Mutation_p.H839L|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Missense_Mutation_p.H540L|ADAMTS13_uc004cds.1_Missense_Mutation_p.H395L|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	870					cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GGCTGGGGCCATGTGAGTGCC	0.647			NA											4	13					0	0	0.000602	0	0
QSOX2	169714	broad.mit.edu	37	9	139115958	139115958	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:139115958C>A	uc010nbi.2	-	4	517	c.479G>T	c.(478-480)GGA>GTA	p.G160V		NM_181701	NP_859052	Q6ZRP7	QSOX2_HUMAN	quiescin Q6 sulfhydryl oxidase 2 precursor	160	Thioredoxin.				cell redox homeostasis	extracellular region|integral to membrane|nuclear membrane|plasma membrane	thiol oxidase activity			ovary(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;7.78e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.55e-07)		TCGGTCAGGTCCTGCCGGAAG	0.657			NA											14	30					6.31663e-08	9.19884e-08	0.003163	1	0
ARSH	347527	broad.mit.edu	37	X	2931179	2931179	+	Silent	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:2931179G>C	uc011mhj.1	+	3	306	c.306G>C	c.(304-306)CTG>CTC	p.L102L		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	102						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TTGCCAAGCTGCTGCAGCACC	0.562			NA											11	81					0	0	0.008291	0	0
STS	412	broad.mit.edu	37	X	7171273	7171273	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:7171273G>T	uc004cry.3	+	2	293	c.48G>T	c.(46-48)CTG>CTT	p.L16L	STS_uc004crw.2_RNA|STS_uc011mhp.1_RNA|STS_uc004crx.1_RNA|STS_uc010ndm.1_RNA	NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	16					female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	TGTTCTTTCTGTGGGAAGCCG	0.453			NA							Ichthyosis				10	39					1.76689e-08	2.62345e-08	0.006214	1	0
OFD1	8481	broad.mit.edu	37	X	13778502	13778502	+	Silent	SNP	G	G	A	rs145300245	byFrequency	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:13778502G>A	uc004cvp.3	+	16	2282	c.1923G>A	c.(1921-1923)GAG>GAA	p.E641E	OFD1_uc004cvr.3_Silent_p.E208E|OFD1_uc011mil.1_Silent_p.E208E|OFD1_uc004cvq.3_Silent_p.E501E|OFD1_uc010nen.2_Silent_p.E640E|OFD1_uc004cvs.3_RNA|OFD1_uc004cvu.3_Silent_p.E600E|OFD1_uc004cvv.3_Silent_p.E600E	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	641	Potential.|Mediates the interaction with SDCCAG8.|Mediates homooligomerization.				cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						TTCAGCAAGAGGCCGAACGCT	0.478			NA											4	100					0	0	0.009096	0	0
SYAP1	94056	broad.mit.edu	37	X	16761894	16761894	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:16761894C>T	uc004cxp.2	+	5	599	c.506C>T	c.(505-507)CCC>CTC	p.P169L	SYAP1_uc004cxo.2_Missense_Mutation_p.P169L|SYAP1_uc011miv.1_Missense_Mutation_p.P135L	NM_032796	NP_116185	Q96A49	SYAP1_HUMAN	SYAP1 protein	169	BSD.									skin(1)	1	Hepatocellular(33;0.0997)					CAGATGTACCCCGTGGCCCTG	0.468			NA											6	226					0	0	0.001168	0	0
CDKL5	6792	broad.mit.edu	37	X	18627664	18627664	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:18627664C>A	uc004cym.2	+	14	2379	c.2126C>A	c.(2125-2127)CCA>CAA	p.P709Q	CDKL5_uc004cyn.2_Missense_Mutation_p.P709Q	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	709					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					GATCCTGTGCCAAGGAGAGTT	0.498			NA											7	54					8.12818e-05	9.89581e-05	0.001984	1	0
MAGEB6	158809	broad.mit.edu	37	X	26212698	26212698	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:26212698G>A	uc004dbr.2	+	2	884	c.735G>A	c.(733-735)GTG>GTA	p.V245V	MAGEB6_uc010ngc.1_Silent_p.V25V	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	245	MAGE.									ovary(3)	3						AACATTTGGTGGTGGCCTTTG	0.507			NA											12	59					0	0	0.000978	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27765740	27765740	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:27765740T>A	uc011mjy.1	+	1	815	c.728T>A	c.(727-729)CTG>CAG	p.L243Q		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						GGCACCCGGCTGGCCAGTAGC	0.532			NA											4	26					0	0	0.009096	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998837	27998837	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:27998837G>T	uc004dbx.1	-	1	730	c.615C>A	c.(613-615)AAC>AAA	p.N205K		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	205	WD 1.									ovary(3)|skin(1)	4						TGCCACGCTGGTTAAAGTGTA	0.537			NA											6	25					4.096e-09	6.31505e-09	0.001168	1	0
ZNF673	55634	broad.mit.edu	37	X	46322201	46322201	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:46322201G>C	uc004dgn.3	+	4	333	c.34G>C	c.(34-36)GAC>CAC	p.D12H	ZNF673_uc004dgp.3_Missense_Mutation_p.D12H|ZNF673_uc010nhl.2_Missense_Mutation_p.D12H|ZNF673_uc004dgm.3_Missense_Mutation_p.D12H	NM_001129898	NP_001123370	Q5JUW0	ZN673_HUMAN	zinc finger family member 673 isoform 1	12	KRAB.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding				0						GACCTTCAAGGACGTGTTTGT	0.547			NA											8	34					0	0	0.00308	0	0
PORCN	64840	broad.mit.edu	37	X	48369726	48369726	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:48369726G>A	uc010nie.1	+	3	338	c.180G>A	c.(178-180)GGG>GGA	p.G60G	PORCN_uc004djq.1_Silent_p.G173G|PORCN_uc004djr.1_Silent_p.G60G|PORCN_uc004djs.1_Silent_p.G60G|PORCN_uc004djt.1_Intron|PORCN_uc011mlx.1_Intron|PORCN_uc004dju.1_Intron|PORCN_uc004djv.1_Silent_p.G60G|PORCN_uc004djw.1_Silent_p.G60G	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D	60	Extracellular (Potential).|Leu-rich.		G -> R (in FODH).		Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						TGGCAGGCGGGTTCTTCAGCC	0.443			NA									OREG0019764	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	98					0	0	0.006122	0	0
WNK3	65267	broad.mit.edu	37	X	54275171	54275171	+	Silent	SNP	G	G	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:54275171G>A	uc004dtd.1	-	17	4049	c.3610C>T	c.(3610-3612)CTG>TTG	p.L1204L	WNK3_uc004dtc.1_Silent_p.L1204L	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	1204					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						ATCACATTCAGGTCCCTTTTG	0.393			NA											8	36					0	0	0.00308	0	0
ITIH5L	347365	broad.mit.edu	37	X	54784218	54784218	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:54784218C>T	uc004dtj.2	-	8	2319	c.2289G>A	c.(2287-2289)GTG>GTA	p.V763V		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	763	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TGCCAGGTTTCACAGGTGGGA	0.532			NA											6	75					0	0	0.001168	0	0
APEX2	27301	broad.mit.edu	37	X	55033290	55033290	+	Missense_Mutation	SNP	C	C	A	rs138407648	byFrequency	TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:55033290C>A	uc004dtz.2	+	6	1055	c.979C>A	c.(979-981)CGC>AGC	p.R327S	APEX2_uc011mom.1_Missense_Mutation_p.R156S	NM_014481	NP_055296	Q9UBZ4	APEX2_HUMAN	apurinic/apyrimidinic endonuclease 2	327					cell cycle|DNA recombination|DNA repair	nucleus	DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|endonuclease activity|exonuclease activity|zinc ion binding			breast(1)	1						TCTGTGCACCCGCTTCCTCCC	0.572			NA						Other_BER_factors					3	34					0.004672	0.00517176	0.004672	1	0
USP51	158880	broad.mit.edu	37	X	55514457	55514457	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:55514457C>A	uc004dun.1	-	2	995	c.916G>T	c.(916-918)GAA>TAA	p.E306*	USP51_uc011moo.1_Intron	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	306					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						AAAATTTTTTCTTTTGTTTCT	0.343			NA											4	72					0.00024832	0.000291915	0.009096	1	0
PJA1	64219	broad.mit.edu	37	X	68382632	68382632	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:68382632C>A	uc004dxh.2	-	2	736	c.450G>T	c.(448-450)AAG>AAT	p.K150N	PJA1_uc011mpi.1_5'UTR|PJA1_uc004dxg.2_Intron|PJA1_uc004dxi.2_Missense_Mutation_p.K95N	NM_145119	NP_660095	Q8NG27	PJA1_HUMAN	praja 1 isoform a	150							zinc ion binding				0						GGTCATACAGCTTATCATCTT	0.512			NA											8	18					0.000157383	0.000188254	0.00308	1	0
PHKA1	5255	broad.mit.edu	37	X	71856209	71856210	+	Nonsense_Mutation	DNP	CC	CC	TA			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:71856209_71856210CC>TA	uc004eax.3	-	15	1787_1788	c.1486_1487GG>TA	c.(1486-1488)GGA>TAA	p.G496*	PHKA1_uc004eay.3_Nonsense_Mutation_p.G496*|PHKA1_uc011mqi.1_Nonsense_Mutation_p.G496*	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	496					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GTAGGGTCGTCCACTGAGTTTC	0.356			NA											13	70					0	0	0.004672	0	0
FAM46D	169966	broad.mit.edu	37	X	79698805	79698805	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:79698805A>G	uc004edl.1	+	5	1101	c.767A>G	c.(766-768)AAA>AGA	p.K256R	FAM46D_uc004edm.1_Missense_Mutation_p.K256R	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	256										lung(2)	2						TCAGAAATCAAAAACCTAGAA	0.388			NA											4	49					0	0	0.009096	0	0
ZNF711	7552	broad.mit.edu	37	X	84510461	84510461	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:84510461G>T	uc004eeo.2	+	4	623	c.276G>T	c.(274-276)GCG>GCT	p.A92A	ZNF711_uc004eep.2_Silent_p.A92A|ZNF711_uc004eeq.2_Silent_p.A92A	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	92					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TTCCTGAAGCGGTACTTGAAG	0.433			NA											48	126					1.00953e-15	1.88906e-15	0.003214	1	0
PABPC5	140886	broad.mit.edu	37	X	90691151	90691151	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:90691151C>A	uc004efg.2	+	2	1015	c.575C>A	c.(574-576)ACC>AAC	p.T192N	PABPC5_uc004eff.1_Missense_Mutation_p.T28N	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	192						cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						GAGGTCAGAACCAGGGATAGA	0.463			NA											15	48					6.31663e-08	9.19884e-08	0.003163	1	0
PCDH11X	27328	broad.mit.edu	37	X	91873442	91873442	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:91873442C>A	uc004efk.1	+	7	4392	c.3547C>A	c.(3547-3549)CAG>AAG	p.Q1183K	PCDH11X_uc004efl.1_Missense_Mutation_p.Q1173K|PCDH11X_uc004efo.1_Missense_Mutation_p.Q1146K|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Missense_Mutation_p.Q1175K|PCDH11X_uc004efn.1_Missense_Mutation_p.Q1165K	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1183	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GGCCTCTACTCAGCACCACAG	0.587	NSCLC(38;925 1092 2571 38200 45895)		NA											26	73					3.01185e-09	4.65406e-09	0.003954	1	0
CENPI	2491	broad.mit.edu	37	X	100381698	100381698	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:100381698G>T	uc004egx.2	+	8	958	c.688G>T	c.(688-690)GGA>TGA	p.G230*	CENPI_uc011mrg.1_Nonsense_Mutation_p.G230*|CENPI_uc004egy.2_Nonsense_Mutation_p.G230*	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	230					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						TTTATTTCAGGGAATGCAGCC	0.353			NA											10	398					7.48243e-07	1.03872e-06	0.006214	1	0
NXF3	56000	broad.mit.edu	37	X	102333559	102333559	+	Silent	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:102333559C>A	uc004eju.2	-	17	1451	c.1380G>T	c.(1378-1380)GTG>GTT	p.V460V	NXF3_uc010noi.1_Intron	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	460	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						ACTGTCCTTCCACTTCAAAGA	0.517			NA											7	186					0.00448238	0.00499424	0.004482	1	0
GLRA4	441509	broad.mit.edu	37	X	102979084	102979084	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:102979084C>A	uc011mse.1	-	4	837	c.416G>T	c.(415-417)GGG>GTG	p.G139V	GLRA4_uc010nou.2_Missense_Mutation_p.G139V	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	139	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GAAGTTGGCCCCTTTCTCATT	0.527			NA											54	128					1.4374e-25	2.96599e-25	0.00361	1	0
CXorf57	55086	broad.mit.edu	37	X	105905439	105905439	+	Nonsense_Mutation	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:105905439C>T	uc004emi.3	+	12	2324	c.2173C>T	c.(2173-2175)CAG>TAG	p.Q725*	CXorf57_uc004emj.3_Nonsense_Mutation_p.Q628*	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	725										ovary(1)|lung(1)|breast(1)	3						GTATAATTCTCAGCCTGCGAA	0.403			NA											20	74					0	0	0.008871	0	0
RBM41	55285	broad.mit.edu	37	X	106331911	106331911	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:106331911C>G	uc004emz.2	-	5	713	c.682G>C	c.(682-684)GGC>CGC	p.G228R	RBM41_uc004emy.1_Missense_Mutation_p.G228R	NM_018301	NP_060771	Q96IZ5	RBM41_HUMAN	RNA binding motif protein 41	228							nucleotide binding|RNA binding			ovary(1)	1						TCAGCTGTGCCACTATCACCC	0.463			NA											15	57					0	0	0.00499	0	0
GUCY2F	2986	broad.mit.edu	37	X	108684624	108684624	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:108684624G>T	uc004eod.3	-	7	1933	c.1657C>A	c.(1657-1659)CTA>ATA	p.L553I	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	553	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						GCTGGAGTTAGACTCCCTGAA	0.438			NA											56	150					3.88204e-17	7.40623e-17	0.00361	1	0
IL13RA1	3597	broad.mit.edu	37	X	117900509	117900509	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:117900509G>T	uc004eqs.2	+	7	888	c.845G>T	c.(844-846)TGT>TTT	p.C282F	IL13RA1_uc004eqt.1_Missense_Mutation_p.C282F	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	282	Extracellular (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						GAGGCTAAATGTGAGAATCCA	0.338			NA											5	109					1.23904e-05	1.59673e-05	0.000602	1	0
DCAF12L2	340578	broad.mit.edu	37	X	125299247	125299247	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:125299247G>T	uc004euk.1	-	1	688	c.661C>A	c.(661-663)CGG>AGG	p.R221R		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	221	WD 2.							p.R221Q(1)		lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GGGTCCATCCGCCACAGAGCC	0.637			NA											12	33					6.40141e-05	7.90626e-05	0.000978	1	0
ARHGAP36	158763	broad.mit.edu	37	X	130218269	130218269	+	Silent	SNP	C	C	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:130218269C>T	uc004evz.2	+	5	981	c.636C>T	c.(634-636)TCC>TCT	p.S212S	ARHGAP36_uc004ewa.2_Silent_p.S200S|ARHGAP36_uc004ewb.2_Silent_p.S181S|ARHGAP36_uc004ewc.2_Silent_p.S76S	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	212					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						CAAAAATTTCCTTTCCAATTG	0.498			NA											13	32					0	0	0.001855	0	0
DDX26B	203522	broad.mit.edu	37	X	134713926	134713926	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:134713926G>T	uc004eyw.3	+	15	2585	c.2222G>T	c.(2221-2223)GGA>GTA	p.G741V	DDX26B_uc004eyx.3_Missense_Mutation_p.G342V	NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	741											0	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGTAGGAGGAGCCAAAAAC	0.453			NA											13	48					0.00136819	0.00156791	0.001368	1	0
MAGEA10	4109	broad.mit.edu	37	X	151303839	151303839	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:151303839T>A	uc004ffk.2	-	5	662	c.254A>T	c.(253-255)CAG>CTG	p.Q85L	MAGEA10_uc004ffl.2_Missense_Mutation_p.Q85L	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	85											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTGAGCACTCTGGGGAGGATT	0.448			NA											48	162					0	0	0.00361	0	0
GABRQ	55879	broad.mit.edu	37	X	151819033	151819033	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:151819033G>T	uc004ffp.1	+	7	911	c.891G>T	c.(889-891)AGG>AGT	p.R297S		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	297						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGCAGCCAGGGTGACAATTG	0.438			NA											73	249					2.13431e-38	4.61307e-38	0.00361	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900060	151900061	+	Missense_Mutation	DNP	GG	GG	CA			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:151900060_151900061GG>CA	uc010ntp.2	-	3	1094_1095	c.740_741CC>TG	c.(739-741)ACC>ATG	p.T247M	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.T247M	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	247	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAATCTTGGGTGAGCAGCTT	0.574			NA											52	192					0	0	0.004672	0	0
SRPK3	26576	broad.mit.edu	37	X	153049525	153049525	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:153049525C>A	uc004fil.2	+	10	1036	c.1004C>A	c.(1003-1005)TCC>TAC	p.S335Y	SRPK3_uc004fik.2_Missense_Mutation_p.S401Y|SRPK3_uc010nul.2_Intron|SRPK3_uc004fin.2_Missense_Mutation_p.S334Y|SRPK3_uc004fim.2_Intron	NM_014370	NP_055185	Q9UPE1	SRPK3_HUMAN	serine arginine rich protein-specific kinase 3	335	Protein kinase.				cell differentiation|muscle organ development|muscle tissue development		ATP binding|protein serine/threonine kinase activity			pancreas(2)|lung(1)	3	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GCCTCTTCCTCCCCCGCCCCA	0.697	Esophageal Squamous(167;766 3400 32156)		NA											11	27					0.000673444	0.00078626	0.008291	1	0
CLIC2	1193	broad.mit.edu	37	X	154508456	154508456	+	Silent	SNP	G	G	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chrX:154508456G>T	uc004fnf.2	-	5	814	c.564C>A	c.(562-564)CCC>CCA	p.P188P	CLIC2_uc010nvj.1_Silent_p.P206P	NM_001289	NP_001280	O15247	CLIC2_HUMAN	chloride intracellular channel 2	188	GST C-terminal.|C-terminal.				signal transduction	chloride channel complex|cytoplasm|nucleus	voltage-gated chloride channel activity			large_intestine(1)|ovary(1)|skin(1)	3	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGTTCAGCTTGGGTAACAAGC	0.478	Melanoma(108;581 1592 2289 21669 28822)		NA											6	133					0.00116845	0.00134126	0.001168	1	0
ESPN	83715	broad.mit.edu	37	1	6520177	6520178	+	Frame_Shift_Ins	INS	-	-	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:6520177_6520178insT	uc001amy.2	+	13	2704_2705	c.2536_2537insT	c.(2536-2538)CTGfs	p.L846fs	ESPN_uc001amz.2_Frame_Shift_Ins_p.L280fs	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	846					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		ACAGGTCATCCTGAAGAAGGGG	0.668			NA											14	45	---	---	---	---	NA	NA	NA	NA	NA
MST1P9	11223	broad.mit.edu	37	1	17086085	17086086	+	Frame_Shift_Ins	INS	-	-	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:17086085_17086086insC	uc010ock.1	-	7	811_812	c.811_812insG	c.(811-813)GCGfs	p.A271fs	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GGCAAGGTACGCCGCGGTGGTG	0.649			NA											3	6	---	---	---	---	NA	NA	NA	NA	NA
PHGDH	26227	broad.mit.edu	37	1	120279767	120279768	+	Frame_Shift_Ins	INS	-	-	A	rs150995624		TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:120279767_120279768insA	uc001ehz.2	+	8	1050_1051	c.823_824insA	c.(823-825)CATfs	p.H275fs	PHGDH_uc009whm.2_Frame_Shift_Ins_p.H173fs|PHGDH_uc001eia.2_Frame_Shift_Ins_p.H275fs|PHGDH_uc009whn.2_Frame_Shift_Ins_p.H275fs|PHGDH_uc001eib.2_Frame_Shift_Ins_p.H241fs	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	275					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CTTGGTGGACCATGAGAATGTC	0.609			NA											16	42	---	---	---	---	NA	NA	NA	NA	NA
RYR2	6262	broad.mit.edu	37	1	237993848	237993848	+	Frame_Shift_Del	DEL	G	G	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr1:237993848delG	uc001hyl.1	+	103	14794	c.14674delG	c.(14674-14676)GGGfs	p.G4892fs	RYR2_uc010pyb.1_Intron	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4892					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTTCATCTGTGGGATAGGCAA	0.433			NA											27	121	---	---	---	---	NA	NA	NA	NA	NA
TRHDE	29953	broad.mit.edu	37	12	73014906	73014907	+	Frame_Shift_Ins	INS	-	-	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr12:73014906_73014907insT	uc001sxa.2	+	14	2383_2384	c.2353_2354insT	c.(2353-2355)GTTfs	p.V785fs		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	785	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTTAAAGCAAGTTGCAACAACA	0.292			NA											14	55	---	---	---	---	NA	NA	NA	NA	NA
POSTN	10631	broad.mit.edu	37	13	38158979	38158980	+	Frame_Shift_Ins	INS	-	-	A			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr13:38158979_38158980insA	uc001uwo.3	-	8	1099_1100	c.981_982insT	c.(979-984)AATACAfs	p.N327fs	POSTN_uc001uwp.3_Frame_Shift_Ins_p.N327fs|POSTN_uc001uwr.2_Frame_Shift_Ins_p.N327fs|POSTN_uc001uwq.2_Frame_Shift_Ins_p.N327fs|POSTN_uc010teu.1_Frame_Shift_Ins_p.N327fs|POSTN_uc010tev.1_Frame_Shift_Ins_p.N327fs|POSTN_uc010tew.1_Frame_Shift_Ins_p.N327fs|POSTN_uc010tex.1_Frame_Shift_Ins_p.N242fs	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	327_328	FAS1 2.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		ATCTCAATTGTATTTCCTTCCA	0.376			NA											17	39	---	---	---	---	NA	NA	NA	NA	NA
ADAL	161823	broad.mit.edu	37	15	43638085	43638086	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	TT	TT	-	-	TT	TT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr15:43638085_43638086delTT	uc010udo.1	+	9	1033_1034	c.459_460delTT	c.(457-462)CCTTTAfs	p.P153fs	ADAL_uc001zrh.2_Frame_Shift_Del_p.P153fs|ADAL_uc001zri.1_Frame_Shift_Del_p.P38fs	NM_001159280	NP_001152752	Q6DHV7	ADAL_HUMAN	adenosine deaminase-like isoform 1	153_154					adenosine catabolic process|inosine biosynthetic process|purine ribonucleoside monophosphate biosynthetic process		adenosine deaminase activity|metal ion binding				0		all_cancers(109;7.96e-11)|all_epithelial(112;2.96e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;9.31e-07)		GAGGTGGCCCTTTAGTAGCCAA	0.411			NA											10	88	---	---	---	---	NA	NA	NA	NA	NA
XIRP2	129446	broad.mit.edu	37	2	168103030	168103030	+	Frame_Shift_Del	DEL	G	G	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr2:168103030delG	uc002udx.2	+	8	5146	c.5128delG	c.(5128-5130)GGTfs	p.G1710fs	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Frame_Shift_Del_p.G1535fs|XIRP2_uc010fpq.2_Frame_Shift_Del_p.G1488fs|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1535					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGAAGTAATAGGTGGTGATGT	0.338			NA											20	71	---	---	---	---	NA	NA	NA	NA	NA
BPI	671	broad.mit.edu	37	20	36932652	36932652	+	Frame_Shift_Del	DEL	G	G	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:36932652delG	uc002xib.2	+	1	101	c.39delG	c.(37-39)CCGfs	p.P13fs		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	13					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				GCAACGCGCCGAGATGGGCGT	0.617			NA											16	116	---	---	---	---	NA	NA	NA	NA	NA
BMP7	655	broad.mit.edu	37	20	55777651	55777651	+	Frame_Shift_Del	DEL	G	G	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr20:55777651delG	uc010gip.1	-	3	1169	c.640delC	c.(640-642)CGTfs	p.R214fs	BMP7_uc010giq.1_Frame_Shift_Del_p.R214fs|BMP7_uc002xyc.2_Frame_Shift_Del_p.R214fs	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	214					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			CAGAGGGTACGGCTGTCGAGC	0.617			NA											14	56	---	---	---	---	NA	NA	NA	NA	NA
SCAND3	114821	broad.mit.edu	37	6	28541080	28541081	+	Frame_Shift_Ins	INS	-	-	T			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:28541080_28541081insT	uc003nlo.2	-	4	3203_3204	c.2585_2586insA	c.(2584-2586)AAGfs	p.K862fs		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	862					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gagctaccttctttgctgcaga	0			NA											24	173	---	---	---	---	NA	NA	NA	NA	NA
OPRM1	4988	broad.mit.edu	37	6	154410994	154410994	+	Frame_Shift_Del	DEL	C	C	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr6:154410994delC	uc003qpr.2	+	2	561	c.324delC	c.(322-324)TACfs	p.Y108fs	OPRM1_uc011efb.1_Frame_Shift_Del_p.Y156fs|OPRM1_uc011efc.1_Frame_Shift_Del_p.Y27fs|OPRM1_uc011efd.1_Frame_Shift_Del_p.Y8fs|OPRM1_uc011efe.1_Frame_Shift_Del_p.Y201fs|OPRM1_uc003qpn.2_Frame_Shift_Del_p.Y108fs|OPRM1_uc003qpo.1_Frame_Shift_Del_p.Y108fs|OPRM1_uc011eff.1_Frame_Shift_Del_p.Y108fs|OPRM1_uc011efg.1_Frame_Shift_Del_p.Y108fs|OPRM1_uc011efh.1_Frame_Shift_Del_p.Y108fs|OPRM1_uc003qpq.1_Frame_Shift_Del_p.Y108fs|OPRM1_uc003qpt.1_Frame_Shift_Del_p.Y108fs|OPRM1_uc011efi.1_Frame_Shift_Del_p.Y108fs|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Frame_Shift_Del_p.Y8fs|OPRM1_uc003qpu.2_Frame_Shift_Del_p.Y8fs	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	108	Helical; Name=2; (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	CCAACATCTACATTTTCAACC	0.433			NA											28	87	---	---	---	---	NA	NA	NA	NA	NA
SNTG1	54212	broad.mit.edu	37	8	51664620	51664620	+	Frame_Shift_Del	DEL	C	C	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:51664620delC	uc010lxy.1	+	19	1715	c.1344delC	c.(1342-1344)AGCfs	p.S448fs	SNTG1_uc003xqs.1_Frame_Shift_Del_p.S448fs|SNTG1_uc010lxz.1_Intron|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	448					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				ATGGCAAGAGCAAAATCAAAT	0.358			NA											29	90	---	---	---	---	NA	NA	NA	NA	NA
TRPA1	8989	broad.mit.edu	37	8	72967791	72967791	+	Frame_Shift_Del	DEL	C	C	-			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:72967791delC	uc003xza.2	-	12	1584	c.1409delG	c.(1408-1410)AGTfs	p.S470fs		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	470	ANK 11.|Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	CCTCGTATCACTTATGTCTTG	0.388			NA											14	63	---	---	---	---	NA	NA	NA	NA	NA
TRIB1	10221	broad.mit.edu	37	8	126448538	126448539	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr8:126448538_126448539insTC	uc003yrx.2	+	3	1526_1527	c.944_945insTC	c.(943-945)ATTfs	p.I315fs	TRIB1_uc011lis.1_Frame_Shift_Ins_p.I149fs|TRIB1_uc010mdn.2_Frame_Shift_Ins_p.I84fs	NM_025195	NP_079471	Q96RU8	TRIB1_HUMAN	G-protein-coupled receptor induced protein	315	Protein kinase.				JNK cascade|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity|response to lipopolysaccharide	cytoplasm|nucleus	ATP binding|mitogen-activated protein kinase kinase binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			lung(1)	1	all_hematologic(1;4.97e-05)|Ovarian(258;0.00167)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			AGGTGCCTCATTCGCAGCCTCT	0.574			NA											16	142	---	---	---	---	NA	NA	NA	NA	NA
PAPPA	5069	broad.mit.edu	37	9	118949903	118949904	+	Frame_Shift_Ins	INS	-	-	C			TCGA-64-1679-01A-21D-2063-08	TCGA-64-1679-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	529d953a-880b-4dd4-a6aa-c09c8c89d980	510b548e-4350-45c8-889d-8930c2f20f9c	g.chr9:118949903_118949904insC	uc004bjn.2	+	2	1267_1268	c.886_887insC	c.(886-888)GCCfs	p.A296fs	PAPPA_uc011lxp.1_Frame_Shift_Ins_p.A89fs|PAPPA_uc011lxq.1_Frame_Shift_Ins_p.A89fs	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	296	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGTGAAGCATGCCTGGTCCCCC	0.584			NA											15	34	---	---	---	---	NA	NA	NA	NA	NA
