Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MASP2	10747	broad.mit.edu	37	1	11103420	11103420	+	Silent	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:11103420G>C	uc001aru.2	-	5	738	c.717C>G	c.(715-717)ACC>ACG	p.T239T		NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	239	CUB 2.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		AGGGACACAGGGTTTCAGGGT	0.567	GBM(35;611 746 20780 22741 36496)		NA											7	8					0	0	0.038147	0	0
RSC1A1	6248	broad.mit.edu	37	1	15986768	15986768	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:15986768C>T	uc010obn.1	+	1	405	c.405C>T	c.(403-405)GTC>GTT	p.V135V		NM_006511	NP_006502	Q92681	RSCA1_HUMAN	regulatory solute carrier protein, family 1,	135					negative regulation of transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transport	cell junction|Golgi apparatus|nucleus	ion channel inhibitor activity			ovary(1)	1		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00276)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTTTATCTGTCACATCTACTA	0.438			NA											20	81					0	0	0.055883	0	0
MACF1	23499	broad.mit.edu	37	1	39768595	39768595	+	Splice_Site	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:39768595G>C	uc010ois.1	+	24	2855	c.2650_splice	c.e24-1	p.I884_splice	MACF1_uc001cda.1_Splice_Site_p.I792_splice|MACF1_uc001cdc.1_Splice_Site|MACF1_uc009vvq.1_Intron|MACF1_uc001cdb.1_Splice_Site	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker						cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TATCTCTTCAGATTACTATTT	0.398			NA											22	19					0	0	0.034045	0	0
SV2A	9900	broad.mit.edu	37	1	149884879	149884879	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:149884879G>T	uc001etg.2	-	2	1005	c.514C>A	c.(514-516)CTT>ATT	p.L172I	SV2A_uc001eth.2_Missense_Mutation_p.L172I	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	172	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GCCAGACCAAGCACAAAATAC	0.572			NA											26	57					7.92952e-12	9.37752e-12	0.0918	1	0
SH2D2A	9047	broad.mit.edu	37	1	156777073	156777073	+	Missense_Mutation	SNP	T	T	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:156777073T>G	uc001fqd.2	-	8	1207	c.1067A>C	c.(1066-1068)CAC>CCC	p.H356P	SH2D2A_uc001fqc.1_Missense_Mutation_p.H328P|SH2D2A_uc009wsh.2_Missense_Mutation_p.H366P|SH2D2A_uc001fqe.2_Missense_Mutation_p.H338P|SH2D2A_uc010phs.1_Missense_Mutation_p.H356P	NM_003975	NP_003966	Q9NP31	SH22A_HUMAN	SH2 domain protein 2A isoform 2	356	Pro-rich.				angiogenesis|cell differentiation|signal transduction	cytoplasm|soluble fraction	SH3 domain binding|SH3/SH2 adaptor activity				0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGGGGGCTGGTGGGGCAGGGG	0.597			NA											4	31					0	0	0.080935	0	0
FCRL4	83417	broad.mit.edu	37	1	157551402	157551402	+	Missense_Mutation	SNP	C	C	T	rs146388580	byFrequency	TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:157551402C>T	uc001fqw.2	-	7	1304	c.1168G>A	c.(1168-1170)GCG>ACG	p.A390T	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	390	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GTGGCTCCCGCGGCGACAAGG	0.572			NA											5	37					0	0	0.014758	0	0
UHMK1	127933	broad.mit.edu	37	1	162470776	162470776	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:162470776G>T	uc001gcc.1	+	3	771	c.635G>T	c.(634-636)GGC>GTC	p.G212V	UHMK1_uc001gcb.1_Missense_Mutation_p.G138V|UHMK1_uc009wuu.1_Missense_Mutation_p.G212V	NM_175866	NP_787062	Q8TAS1	UHMK1_HUMAN	kinase interacting stathmin	212	Protein kinase.				cell cycle arrest|neuron projection development|peptidyl-serine phosphorylation|positive regulation of translational initiation|protein autophosphorylation|regulation of protein export from nucleus	axon|dendrite cytoplasm|neuronal RNA granule|nucleus	protein binding|protein serine/threonine kinase activity|ribonucleoprotein binding|RNA binding				0	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			GCCCAGGCTGGCCTGCAGAGT	0.418			NA											23	74					2.12542e-12	2.53558e-12	0.030593	1	0
KCNT2	343450	broad.mit.edu	37	1	196227494	196227494	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:196227494C>T	uc001gtd.1	-	26	3101	c.3041G>A	c.(3040-3042)AGC>AAC	p.S1014N	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.S947N|KCNT2_uc001gtf.1_Missense_Mutation_p.S990N|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Missense_Mutation_p.S518N	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1014	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CCACTGCATGCTTTTTCTCCG	0.517			NA											13	69					0	0	0.028581	0	0
USH2A	7399	broad.mit.edu	37	1	216246299	216246299	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:216246299C>A	uc001hku.1	-	29	6176	c.5789G>T	c.(5788-5790)CGA>CTA	p.R1930L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1930	Fibronectin type-III 5.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGCTATCACTCGATACAGGTA	0.403			NA								HNSCC(13;0.011)			35	120					3.78316e-11	4.39752e-11	0.086207	1	0
TSNAX	7257	broad.mit.edu	37	1	231672960	231672960	+	Silent	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr1:231672960A>G	uc001huw.2	+	3	281	c.123A>G	c.(121-123)TCA>TCG	p.S41S	TSNAX-DISC1_uc010pwe.1_5'UTR|TSNAX-DISC1_uc010pwf.1_5'UTR|TSNAX-DISC1_uc010pwg.1_5'UTR|TSNAX-DISC1_uc010pwh.1_5'UTR|TSNAX-DISC1_uc010pwi.1_Intron|TSNAX-DISC1_uc010pwj.1_5'UTR|TSNAX-DISC1_uc010pwk.1_5'UTR|TSNAX-DISC1_uc010pwl.1_RNA	NM_005999	NP_005990	Q99598	TSNAX_HUMAN	translin-associated factor X	41					cell differentiation|multicellular organismal development|spermatogenesis	nucleus|perinuclear region of cytoplasm	protein transporter activity|sequence-specific DNA binding				0		all_cancers(173;0.0395)|Acute lymphoblastic leukemia(190;3.76e-06)|Prostate(94;0.116)				TGTTTTTAGCATTTCAGCAGG	0.308			NA											47	30					0	0	0.048971	0	0
YME1L1	10730	broad.mit.edu	37	10	27436425	27436425	+	Splice_Site	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr10:27436425A>G	uc001iti.2	-	3	521	c.339_splice	c.e3+1	p.P113_splice	YME1L1_uc001itj.2_Intron|YME1L1_uc010qdl.1_Intron|YME1L1_uc009xkv.2_Intron|YME1L1_uc001itk.1_Missense_Mutation_p.V114A	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1						protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						CCCGCAGTGTACAGGGATTGA	0.308			NA											5	25					0	0	0.038147	0	0
PDCD4	27250	broad.mit.edu	37	10	112655791	112655791	+	Missense_Mutation	SNP	A	A	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr10:112655791A>T	uc001kzh.2	+	11	1538	c.1295A>T	c.(1294-1296)GAA>GTA	p.E432V	PDCD4_uc001kzg.2_Missense_Mutation_p.E421V|PDCD4_uc010qre.1_Missense_Mutation_p.E418V	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1	432	MI 2.				apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		TTTGTAGAAGAATGTTTTCAG	0.353	Ovarian(115;1498 1603 9363 40056 40885)		NA											3	39					0	0	0.004672	0	0
ZNF143	7702	broad.mit.edu	37	11	9495562	9495562	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:9495562C>A	uc001mhr.2	+	4	398	c.280C>A	c.(280-282)CCT>ACT	p.P94T	ZNF143_uc009yfu.2_Missense_Mutation_p.P94T|ZNF143_uc010rby.1_Missense_Mutation_p.P63T	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	94					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		TGTACCCATACCTAAAAGTAG	0.378			NA											44	72					2.52991e-16	3.24592e-16	0.048971	1	0
DBX1	120237	broad.mit.edu	37	11	20177910	20177910	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:20177910G>A	uc001mpw.1	-	4	999	c.999C>T	c.(997-999)TCC>TCT	p.S333S		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	294					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGGGGTCGGAGGACGCGTGGT	0.731			NA											9	15					0	0	0.047766	0	0
LUZP2	338645	broad.mit.edu	37	11	25004797	25004797	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:25004797G>T	uc001mqs.2	+	9	957	c.723G>T	c.(721-723)AGG>AGT	p.R241S	LUZP2_uc009yif.2_Missense_Mutation_p.R155S|LUZP2_uc009yig.2_Missense_Mutation_p.R199S	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	241						extracellular region				ovary(1)|skin(1)	2						TCCCACCCAGGAATATTGCCT	0.443			NA											60	94					6.12789e-21	8.17052e-21	0.048971	1	0
PATL1	219988	broad.mit.edu	37	11	59417006	59417006	+	Silent	SNP	T	T	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:59417006T>C	uc001noe.3	-	14	1805	c.1662A>G	c.(1660-1662)CTA>CTG	p.L554L	PATL1_uc009yms.1_Silent_p.L524L|PATL1_uc010rkw.1_Silent_p.L259L	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	554	Region C.			YERRYLLSLEEERPALMDD->GSGSGSG: In mut3; does not affect neither RNA- binding,interaction with the decapping machinery, nor localization to P-body.	cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						TGTCATCCATTAGGGCAGGTC	0.443			NA											15	20					0	0	0.0333	0	0
FIBP	9158	broad.mit.edu	37	11	65655520	65655520	+	Missense_Mutation	SNP	T	T	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:65655520T>C	uc001ogd.2	-	2	290	c.169A>G	c.(169-171)ATG>GTG	p.M57V	FIBP_uc009yqu.2_Missense_Mutation_p.M54V|FIBP_uc001oge.2_Missense_Mutation_p.M57V|FIBP_uc010roq.1_Missense_Mutation_p.M57V|FIBP_uc010ror.1_Missense_Mutation_p.M57V|CCDC85B_uc001ogf.2_5'Flank	NM_198897	NP_942600	O43427	FIBP_HUMAN	FGF intracellular binding protein isoform a	57					fibroblast growth factor receptor signaling pathway	endomembrane system|membrane|microsome|mitochondrion|nucleus	fibroblast growth factor binding			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.166)		TAATGGTCCATGGTGTCGCTC	0.667			NA									OREG0021090	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	3					0	0	0.009096	0	0
TMEM126B	55863	broad.mit.edu	37	11	85345276	85345276	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:85345276C>T	uc001pao.2	+	4	512	c.260C>T	c.(259-261)TCT>TTT	p.S87F	TMEM126B_uc001pan.1_Missense_Mutation_p.S87F|TMEM126B_uc001pap.2_Missense_Mutation_p.S87F|TMEM126B_uc001paq.1_Missense_Mutation_p.S87F	NM_018480	NP_060950	Q8IUX1	T126B_HUMAN	transmembrane protein 126B	117	Helical; (Potential).					integral to membrane					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CCATTTTTGTCTACTGTTGTT	0.333			NA											11	35					0	0	0.09319	0	0
TMEM126B	55863	broad.mit.edu	37	11	85345296	85345296	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:85345296C>T	uc001pao.2	+	4	532	c.280C>T	c.(280-282)CTT>TTT	p.L94F	TMEM126B_uc001pan.1_Missense_Mutation_p.L94F|TMEM126B_uc001pap.2_Missense_Mutation_p.L94F|TMEM126B_uc001paq.1_Missense_Mutation_p.L94F	NM_018480	NP_060950	Q8IUX1	T126B_HUMAN	transmembrane protein 126B	124	Helical; (Potential).					integral to membrane					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TACTGACAAGCTTTTTGTAAT	0.328			NA											12	26					0	0	0.080935	0	0
YAP1	10413	broad.mit.edu	37	11	102100563	102100563	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr11:102100563G>A	uc001pgt.2	+	9	1777	c.1407G>A	c.(1405-1407)GAG>GAA	p.E469E	YAP1_uc001pgs.2_Silent_p.E419E|YAP1_uc001pgu.2_Silent_p.E453E|YAP1_uc001pgv.2_Silent_p.E415E|YAP1_uc010ruo.1_Silent_p.E291E|YAP1_uc001pgw.2_Silent_p.E293E|YAP1_uc010rup.1_Silent_p.E234E	NM_001130145	NP_001123617	P46937	YAP1_HUMAN	Yes-associated protein 1, 65kDa isoform 1	469	Transactivation domain.				cell proliferation|cellular response to gamma radiation|contact inhibition|hippo signaling cascade|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_cancers(8;0.000575)|all_epithelial(12;0.00564)	Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.00936)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0189)		AAGGAGAGGAGCTGATGCCAA	0.463	Colon(50;247 1103 7861 28956)		NA											3	41					0	0	0.004672	0	0
ANO2	57101	broad.mit.edu	37	12	5841686	5841686	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr12:5841686C>T	uc001qnm.2	-	15	1617	c.1545G>A	c.(1543-1545)GAG>GAA	p.E515E		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	520	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						AGCTTCATACCTCATCGCCAC	0.478			NA											8	27					0	0	0.069234	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21201742	21201742	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr12:21201742C>T	uc010sin.1	+	8	1091	c.1091C>T	c.(1090-1092)GCA>GTA	p.A364V	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.A411V	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	364						membrane	transporter activity				0						GCCAAATTGGCATTTTGTTCT	0.393			NA											8	10					0	0	0.038147	0	0
HMGA2	8091	broad.mit.edu	37	12	66232299	66232299	+	Missense_Mutation	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr12:66232299A>G	uc001ssx.2	+	3	1010	c.199A>G	c.(199-201)AAA>GAA	p.K67E	HMGA2_uc001ssw.1_Missense_Mutation_p.K67E|HMGA2_uc010ssv.1_RNA|HMGA2_uc001sss.1_RNA|HMGA2_uc001sst.1_Missense_Mutation_p.K67E|HMGA2_uc001ssu.1_Missense_Mutation_p.K67E|HMGA2_uc001ssv.2_Missense_Mutation_p.K67E|HMGA2_uc001ssy.2_RNA	NM_003483	NP_003474	P52926	HMGA2_HUMAN	high mobility group AT-hook 2 isoform a	67					cell division|chromatin organization|mitosis|multicellular organismal development|regulation of growth|transcription, DNA-dependent	chromatin	AT DNA binding		HMGA2/LPP(161)|HMGA2/WIF1_ENST00000286574(14)|HMGA2/RAD51B(11)|HMGA2/NFIB_ENST00000397581(8)|HMGA2/FHIT_ENST00000476844(4)|HMGA2/CCNB1IP1(2)|HMGA2/ALDH2_ENST00000261733(2)|HMGA2/EBF1(2)|HMGA2/LHFP(2)|HMGA2/COX6C(2)	soft_tissue(159)|bone(27)|salivary_gland(22)	208	all_cancers(1;5.78e-46)		GBM - Glioblastoma multiforme(1;0.00179)|LUSC - Lung squamous cell carcinoma(43;0.156)	GBM - Glioblastoma multiforme(28;0.0386)		TCATTTGCAGAAAGCAGAAGC	0.353			NA	T	LHFP|RAD51L1|LPP|HEI10|COX6C|CMKOR1|NFIB|ALDH2|CCNB1IP1|EBF1|WIF1|FHIT	lipoma|leiomyoma|pleiomorphic salivary gland adenoma								6	37					0	0	0.02938	0	0
TRPV4	59341	broad.mit.edu	37	12	110236701	110236701	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr12:110236701C>T	uc001tpj.1	-	5	965	c.870G>A	c.(868-870)TCG>TCA	p.S290S	TRPV4_uc001tpg.1_Silent_p.S256S|TRPV4_uc001tph.1_Silent_p.S243S|TRPV4_uc001tpi.1_Silent_p.S243S|TRPV4_uc001tpk.1_Silent_p.S290S|TRPV4_uc001tpl.1_Silent_p.S290S	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	290	Cytoplasmic (Potential).|ANK 2.				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AGGCAGCCAGCGACAGGGGCA	0.677			NA											26	45					0	0	0.034045	0	0
CLIP1	6249	broad.mit.edu	37	12	122812709	122812709	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr12:122812709C>T	uc001ucg.1	-	16	3140	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	CLIP1_uc001uch.1_Missense_Mutation_p.E1001K|CLIP1_uc001uci.1_Missense_Mutation_p.E966K|CLIP1_uc001ucj.1_Missense_Mutation_p.E587K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1012	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		ATTTTCTTTTCCTGCAGAGAC	0.493			NA											23	146					0	0	0.074837	0	0
OR4M1	441670	broad.mit.edu	37	14	20248683	20248683	+	Missense_Mutation	SNP	C	C	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:20248683C>G	uc010tku.1	+	1	202	c.202C>G	c.(202-204)CTC>GTC	p.L68V		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TAATCTGGCCCTCCTTGATAT	0.423			NA											86	653					0	0	0.048971	0	0
OR4K17	390436	broad.mit.edu	37	14	20586392	20586392	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:20586392C>A	uc001vwo.1	+	1	827	c.827C>A	c.(826-828)ACA>AAA	p.T276K		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GCTCACATCACAGTGGTGATT	0.428			NA											16	46					1.45105e-14	1.82725e-14	0.038395	1	0
NRL	4901	broad.mit.edu	37	14	24551823	24551823	+	Nonsense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:24551823G>A	uc001wlo.2	-	2	366	c.235C>T	c.(235-237)CAG>TAG	p.Q79*	NRL_uc001wlp.2_Nonsense_Mutation_p.Q79*|NRL_uc001wlq.2_Nonsense_Mutation_p.Q79*	NM_006177	NP_006168	P54845	NRL_HUMAN	neural retina leucine zipper	79					response to stimulus|transcription from RNA polymerase II promoter|visual perception	nucleus	leucine zipper domain binding|sequence-specific DNA binding				0				GBM - Glioblastoma multiforme(265;0.0181)		AGCTGCTGCTGCAGGGTAGCC	0.667			NA											4	21					0	0	0.009096	0	0
HEATR5A	25938	broad.mit.edu	37	14	31774300	31774300	+	Silent	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:31774300A>G	uc001wrf.3	-	26	4248	c.4171T>C	c.(4171-4173)TTG>CTG	p.L1391L	HEATR5A_uc010ami.2_Silent_p.L1289L	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1678							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		GCAAAGACCAAAGACTTTCCA	0.443			NA											9	82					0	0	0.047766	0	0
C14orf37	145407	broad.mit.edu	37	14	58563492	58563492	+	Missense_Mutation	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:58563492G>C	uc001xdc.2	-	5	2150	c.2039C>G	c.(2038-2040)ACC>AGC	p.T680S	C14orf37_uc010tro.1_Missense_Mutation_p.T718S|C14orf37_uc001xdd.2_Missense_Mutation_p.T680S	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	680	Extracellular (Potential).					integral to membrane	binding				0						CACCTGGTAGGTAGCTCCCTC	0.527			NA											20	30					0	0	0.062417	0	0
SPTB	6710	broad.mit.edu	37	14	65234487	65234487	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:65234487C>A	uc001xht.2	-	29	6167	c.6113G>T	c.(6112-6114)GGA>GTA	p.G2038V	SPTB_uc001xhr.2_Missense_Mutation_p.G2038V|SPTB_uc001xhs.2_Missense_Mutation_p.G2038V|SPTB_uc001xhu.2_Missense_Mutation_p.G2038V|SPTB_uc010aqi.2_Missense_Mutation_p.G699V	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	2038	Spectrin 17.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CACTGTGTGTCCAAAGTCCCC	0.622			NA											28	53					2.12542e-12	2.53558e-12	0.030593	1	0
RIN3	79890	broad.mit.edu	37	14	93142836	93142836	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:93142836G>A	uc001yap.2	+	8	2504	c.2352G>A	c.(2350-2352)GCG>GCA	p.A784A	RIN3_uc010auk.2_Silent_p.A446A|RIN3_uc001yaq.2_Silent_p.A709A|RIN3_uc001yas.1_Silent_p.A446A	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	784	VPS9.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				CCTATGGGGCGGATGACTTCC	0.582			NA											4	107					0	0	0.009096	0	0
GSC	145258	broad.mit.edu	37	14	95234944	95234944	+	Missense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr14:95234944G>A	uc001ydu.2	-	3	805	c.658C>T	c.(658-660)CGG>TGG	p.R220W		NM_173849	NP_776248	P56915	GSC_HUMAN	goosecoid	220					gastrulation|middle ear morphogenesis		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(154;0.0896)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.202)|Epithelial(152;0.239)		GATGAGGACCGCTTCTGCCGC	0.572	Pancreas(105;2165 2186 4892 18008)		NA											3	83					0	0	0.004672	0	0
MAP1A	4130	broad.mit.edu	37	15	43819215	43819215	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr15:43819215G>A	uc001zrt.2	+	4	6011	c.5544G>A	c.(5542-5544)AAG>AAA	p.K1848K		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1848						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GGGTGCCCAAGGACAGACCCC	0.622			NA											3	43					0	0	0.004672	0	0
STRC	161497	broad.mit.edu	37	15	43893141	43893141	+	Silent	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr15:43893141C>A	uc001zsf.2	-	25	4851	c.4773G>T	c.(4771-4773)CTG>CTT	p.L1591L	STRC_uc010bdl.2_Silent_p.L818L|STRC_uc001zse.2_Silent_p.L109L	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1591					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CCAGCGCTGTCAGATGAACGA	0.592			NA											14	55					9.86323e-18	1.27752e-17	0.0918	1	0
PIF1	80119	broad.mit.edu	37	15	65114717	65114717	+	Silent	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr15:65114717G>T	uc002ant.2	-	3	717	c.651C>A	c.(649-651)GCC>GCA	p.A217A	PIF1_uc002anr.2_5'Flank|PIF1_uc002ans.2_5'Flank|PIF1_uc010uiq.1_Silent_p.A217A|PIF1_uc002anu.2_Silent_p.A217A	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	217	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						CTTTCAGGACGGCCCTCAGCA	0.627			NA											13	39					1.05317e-09	1.20362e-09	0.020292	1	0
CYP11A1	1583	broad.mit.edu	37	15	74636145	74636145	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr15:74636145C>A	uc002axt.2	-	4	969	c.814G>T	c.(814-816)GTG>TTG	p.V272L	CYP11A1_uc002axs.2_Missense_Mutation_p.V114L|CYP11A1_uc010bjm.1_Missense_Mutation_p.V114L|CYP11A1_uc010bjn.1_Intron|CYP11A1_uc010bjo.1_Missense_Mutation_p.V272L|CYP11A1_uc010bjp.1_RNA|CYP11A1_uc010ulj.1_Missense_Mutation_p.V52L	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	272					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CTGAAAATCACGTCCCATGCA	0.592	Esophageal Squamous(87;818 1337 4093 9268 37314)		NA											35	137					8.16277e-20	1.06744e-19	0.092188	1	0
LINGO1	84894	broad.mit.edu	37	15	77906450	77906450	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr15:77906450C>A	uc002bct.1	-	2	1851	c.1799G>T	c.(1798-1800)CGA>CTA	p.R600L	LINGO1_uc002bcu.1_Missense_Mutation_p.R594L	NM_032808	NP_116197	Q96FE5	LIGO1_HUMAN	leucine-rich repeat neuronal 6A	600	Cytoplasmic (Potential).				negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)|lung(1)	2						GTCCGACTTTCGGGGCACATA	0.473			NA											15	7					6.31663e-08	7.15884e-08	0.024245	1	0
ST20	400410	broad.mit.edu	37	15	80191311	80191311	+	Missense_Mutation	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr15:80191311G>C	uc002bez.3	-	3	882	c.202C>G	c.(202-204)CTT>GTT	p.L68V	ST20_uc002bfa.3_Missense_Mutation_p.L68V|MTHFS_uc002bex.3_5'Flank	NM_001100879	NP_001094349	Q9HBF5	ST20_HUMAN	cervical cancer suppressor-1	68											0						GTTTTCGTAAGAGTCAGAAAA	0.363			NA											51	49					0	0	0.048971	0	0
BNC1	646	broad.mit.edu	37	15	83932044	83932044	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr15:83932044G>A	uc002bjt.1	-	4	2047	c.1959C>T	c.(1957-1959)GGC>GGT	p.G653G	BNC1_uc010uos.1_Silent_p.G641G	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	653					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AGTGTTCATGGCCACCATCCT	0.552			NA											6	49					0	0	0.02938	0	0
TMEM8A	58986	broad.mit.edu	37	16	424296	424296	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr16:424296G>A	uc002cgu.3	-	10	1809	c.1680C>T	c.(1678-1680)GCC>GCT	p.A560A	TMEM8A_uc002cgv.3_Silent_p.A367A	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	560	Helical; (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						CGGCGATGGGGGCCAGGAACA	0.652			NA									OREG0003702	type=REGULATORY REGION|Gene=TMEM8|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	3	47					0	0	0.014758	0	0
MYH11	4629	broad.mit.edu	37	16	15820850	15820850	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr16:15820850C>A	uc002ddy.2	-	28	3820	c.3713G>T	c.(3712-3714)GGG>GTG	p.G1238V	MYH11_uc002ddv.2_Missense_Mutation_p.G1245V|MYH11_uc002ddw.2_Missense_Mutation_p.G1238V|MYH11_uc002ddx.2_Missense_Mutation_p.G1245V|MYH11_uc010bvg.2_Missense_Mutation_p.G1070V|MYH11_uc010bvh.2_5'Flank	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1238	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CCGCAGCTCCCCGGCCAGGTC	0.607			NA	T	CBFB	AML								102	234					6.00419e-47	8.33235e-47	0.048971	1	0
DNAH3	55567	broad.mit.edu	37	16	21098273	21098273	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr16:21098273C>T	uc010vbe.1	-	19	2774	c.2774G>A	c.(2773-2775)CGC>CAC	p.R925H		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	925	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTCTGCTAAGCGCCTGGGTGC	0.463			NA											13	194					0	0	0.09319	0	0
UQCRC2	7385	broad.mit.edu	37	16	21969921	21969921	+	Splice_Site	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr16:21969921G>C	uc002djx.2	+	4	468	c.332_splice	c.e4+1	p.S111_splice	UQCRC2_uc002djy.2_Splice_Site_p.S111_splice|UQCRC2_uc010bxa.2_Splice_Site	NM_003366	NP_003357	P22695	QCR2_HUMAN	ubiquinol-cytochrome c reductase core protein II						aerobic respiration|oxidative phosphorylation|proteolysis|respiratory electron transport chain|transport		metalloendopeptidase activity|zinc ion binding			large_intestine(2)	2				GBM - Glioblastoma multiforme(48;0.0264)		GCAAATTAAGGTTTGTTAAAT	0.323	Colon(123;450 1645 12841 25393 45623)		NA											6	47					0	0	0.047766	0	0
NF1	4763	broad.mit.edu	37	17	29667604	29667604	+	Missense_Mutation	SNP	A	A	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr17:29667604A>C	uc002hgg.2	+	47	7336	c.7003A>C	c.(7003-7005)ACC>CCC	p.T2335P	NF1_uc002hgh.2_Missense_Mutation_p.T2314P|NF1_uc010cso.2_Missense_Mutation_p.T523P|NF1_uc010wbt.1_5'UTR|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2335					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TTCAGCAGGTACCGCACTTCT	0.438			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			19	8					0	0	0.038395	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254136	39254137	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr17:39254136_39254137GG>TT	uc010wfo.1	-	1	239_240	c.200_201CC>AA	c.(199-201)CCC>CAA	p.P67Q		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	67	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|9.					keratin filament					0						CACAGCAGCTGGGGCGACAGCA	0.579			NA											34	20					0	0	0.004672	0	0
SALL3	27164	broad.mit.edu	37	18	76754643	76754643	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr18:76754643C>T	uc002lmt.2	+	2	2652	c.2652C>T	c.(2650-2652)GGC>GGT	p.G884G	SALL3_uc010dra.2_Silent_p.G491G	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	884					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CGGCCGTGGGCGACCTGGAGA	0.701			NA											28	32					0	0	0.034045	0	0
CACNA1A	773	broad.mit.edu	37	19	13368360	13368360	+	Missense_Mutation	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:13368360A>G	uc010dze.2	-	28	4633	c.4397T>C	c.(4396-4398)CTC>CCC	p.L1466P	CACNA1A_uc010xnd.1_Missense_Mutation_p.L171P|CACNA1A_uc002mwx.3_Missense_Mutation_p.L171P|CACNA1A_uc010dzc.2_Missense_Mutation_p.L991P|CACNA1A_uc002mwy.3_Missense_Mutation_p.L1465P|CACNA1A_uc010xne.1_Missense_Mutation_p.L994P|CACNA1A_uc002mwv.3_5'UTR	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1466	III.|Extracellular (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CGAATGCTTGAGGACCCTGCa	0.323			NA											4	1					0	0	0.009096	0	0
ZNF333	84449	broad.mit.edu	37	19	14810083	14810083	+	Missense_Mutation	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:14810083A>G	uc002mzn.2	+	5	430	c.296A>G	c.(295-297)GAC>GGC	p.D99G	ZNF333_uc010dzq.2_Missense_Mutation_p.D99G|ZNF333_uc002mzk.3_5'UTR|ZNF333_uc002mzl.3_Missense_Mutation_p.D99G|ZNF333_uc002mzm.2_Intron|ZNF333_uc010dzr.1_RNA	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	99					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCCTCCAGGGACATGCAAATG	0.493	NSCLC(60;75 1281 16985 25154 29885)		NA											6	51					0	0	0.021553	0	0
TM6SF2	53345	broad.mit.edu	37	19	19377366	19377366	+	Missense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:19377366G>A	uc002nmd.1	-	9	907	c.857C>T	c.(856-858)GCT>GTT	p.A286V	HAPLN4_uc002nmc.2_5'UTR	NM_001001524	NP_001001524	Q9BZW4	TM6S2_HUMAN	transmembrane 6 superfamily member 2	286	Helical; (Potential).					integral to membrane					0			Epithelial(12;0.0151)			GAAGGTGAGAGCATAGGCAGC	0.607			NA											6	104					0	0	0.021553	0	0
DPY19L3	147991	broad.mit.edu	37	19	32954830	32954830	+	Missense_Mutation	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:32954830A>G	uc002ntg.2	+	14	1677	c.1501A>G	c.(1501-1503)AGC>GGC	p.S501G	DPY19L3_uc002nth.1_Missense_Mutation_p.S501G|DPY19L3_uc002nti.1_RNA	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	501	Helical; (Potential).					integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					CGGCCTATGTAGCCCTGAAAT	0.438			NA											66	247					0	0	0.048971	0	0
ANKRD27	84079	broad.mit.edu	37	19	33135266	33135266	+	Nonsense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:33135266G>A	uc002ntn.1	-	5	646	c.490C>T	c.(490-492)CGA>TGA	p.R164*	ANKRD27_uc002nto.1_Nonsense_Mutation_p.R164*	NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	164				HRTFRECERKSLRHHI -> LIEHSENARERASVTT (in Ref. 4; AAQ04657).	early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					TCGCATTCTCGGAATGTTCGA	0.537			NA											21	412					0	0	0.055883	0	0
CD22	933	broad.mit.edu	37	19	35823644	35823644	+	Missense_Mutation	SNP	T	T	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:35823644T>C	uc010edt.2	+	3	306	c.229T>C	c.(229-231)TAT>CAT	p.Y77H	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Missense_Mutation_p.Y77H|CD22_uc010edv.2_Missense_Mutation_p.Y77H|CD22_uc002nzb.3_Missense_Mutation_p.Y77H	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	77	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	GACAAGACTCTATGAAAGCAC	0.478	Ovarian(42;1009 1133 23674 26041)		NA											70	43					0	0	0.048971	0	0
TTC9B	148014	broad.mit.edu	37	19	40722103	40722103	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:40722103C>T	uc002onc.2	-	3	705	c.687G>A	c.(685-687)GGG>GGA	p.G229G		NM_152479	NP_689692	Q8N6N2	TTC9B_HUMAN	tetratricopeptide repeat domain 9B	229							binding				0						GGGACCCAGCCCCACTGTCTT	0.597			NA											59	96					0	0	0.048971	0	0
ZNF582	147948	broad.mit.edu	37	19	56896146	56896146	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:56896146G>T	uc002qmz.1	-	5	799	c.640C>A	c.(640-642)CTA>ATA	p.L214I	ZNF582_uc002qmy.2_Missense_Mutation_p.L245I	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	214	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		TGTTGAATTAGTCGTGAGCCA	0.343	Ovarian(183;1887 2032 4349 30507 51343)		NA											32	23					2.09667e-21	2.85146e-21	0.064281	1	0
SLC5A6	8884	broad.mit.edu	37	2	27426720	27426720	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr2:27426720C>A	uc002rjd.2	-	10	1412	c.1021G>T	c.(1021-1023)GTG>TTG	p.V341L	SLC5A6_uc010eyv.1_Missense_Mutation_p.V341L	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	341	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	AGATCCATCACAAAGTACAGG	0.582			NA											15	18					4.75885e-15	6.04863e-15	0.0333	1	0
SNX17	9784	broad.mit.edu	37	2	27598474	27598474	+	Silent	SNP	G	G	A	rs143476894		TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr2:27598474G>A	uc002rkg.1	+	10	1098	c.876G>A	c.(874-876)GCG>GCA	p.A292A	SNX17_uc010ylj.1_Silent_p.A272A|SNX17_uc010ylk.1_Silent_p.A78A|SNX17_uc010eza.1_Silent_p.A78A|SNX17_uc002rki.1_RNA|SNX17_uc002rkh.1_Silent_p.A78A|SNX17_uc010yll.1_Silent_p.A78A|SNX17_uc010ylm.1_Silent_p.A78A|SNX17_uc010yln.1_Silent_p.A280A|SNX17_uc010ylo.1_Silent_p.A210A|SNX17_uc010ylp.1_Silent_p.A267A|SNX17_uc010ylq.1_Silent_p.A78A	NM_014748	NP_055563	Q15036	SNX17_HUMAN	sorting nexin 17	292					cell communication|endosome transport|intracellular protein transport|regulation of endocytosis|signal transduction	cytoplasmic vesicle membrane|cytosol|early endosome|Golgi apparatus	low-density lipoprotein particle receptor binding|phosphatidylinositol binding|protein C-terminus binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGTGAGCGCGGGCAACAGTG	0.632			NA											18	142					0	0	0.049695	0	0
SNRNP200	23020	broad.mit.edu	37	2	96952528	96952528	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr2:96952528C>T	uc002svu.2	-	28	3813	c.3727G>A	c.(3727-3729)GCC>ACC	p.A1243T	SNRNP200_uc002svt.2_5'Flank|SNRNP200_uc010yuj.1_5'Flank|SNRNP200_uc002svv.1_5'Flank|SNRNP200_uc002svw.1_Missense_Mutation_p.A315T	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1243	SEC63 1.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GCGTACTTGGCCTTGAGGAGA	0.542			NA											31	66					0	0	0.054565	0	0
MARCO	8685	broad.mit.edu	37	2	119739028	119739028	+	Missense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr2:119739028G>A	uc002tln.1	+	9	942	c.810G>A	c.(808-810)ATG>ATA	p.M270I	MARCO_uc010yyf.1_Missense_Mutation_p.M192I	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	270	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						CAGGGGTCATGGGGCCTCCTG	0.557	GBM(8;18 374 7467 11269 32796)		NA											16	23					0	0	0.069288	0	0
SMOX	54498	broad.mit.edu	37	20	4163119	4163119	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr20:4163119C>T	uc002wkm.1	+	5	1194	c.993C>T	c.(991-993)ACC>ACT	p.T331T	SMOX_uc002wkk.1_Intron|SMOX_uc002wkl.1_Intron|SMOX_uc002wkn.1_Intron|SMOX_uc002wkp.2_Silent_p.T331T|SMOX_uc010zqo.1_Intron|SMOX_uc002wko.1_Silent_p.T331T	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	331					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	TGATTGTGACCGTGTCGCTAG	0.632			NA											5	104					0	0	0.021553	0	0
ZNF831	128611	broad.mit.edu	37	20	57767569	57767569	+	Missense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr20:57767569G>A	uc002yan.2	+	1	1495	c.1495G>A	c.(1495-1497)GTC>ATC	p.V499I		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	499						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CGTGGAATGTGTCCCCGTCAC	0.701			NA											12	27					0	0	0.09319	0	0
SLC5A1	6523	broad.mit.edu	37	22	32498215	32498215	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr22:32498215G>A	uc003amc.2	+	13	1888	c.1656G>A	c.(1654-1656)CCG>CCA	p.P552P	SLC5A1_uc011alz.1_Silent_p.P425P	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	552	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						AACCCATTCCGGATGTGCATG	0.378			NA											16	96					0	0	0.049695	0	0
EIF3D	8664	broad.mit.edu	37	22	36921726	36921726	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr22:36921726C>T	uc003apq.2	-	3	270	c.154G>A	c.(154-156)GAT>AAT	p.D52N	EIF3D_uc003apr.2_Missense_Mutation_p.D52N|EIF3D_uc011ams.1_5'UTR|EIF3D_uc011amt.1_Missense_Mutation_p.D52N	NM_003753	NP_003744	O15371	EIF3D_HUMAN	eukaryotic translation initiation factor 3	52						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			pancreas(1)	1						TACCTCTTATCTTGGTATGTG	0.438			NA											46	31					0	0	0.048971	0	0
VGLL4	9686	broad.mit.edu	37	3	11643423	11643423	+	Silent	SNP	G	G	A	rs151086238	byFrequency	TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:11643423G>A	uc003bwf.2	-	3	504	c.138C>T	c.(136-138)ACC>ACT	p.T46T	VGLL4_uc010hdx.1_Silent_p.T52T|VGLL4_uc003bwg.2_Silent_p.T51T|VGLL4_uc011aun.1_5'UTR	NM_014667	NP_055482	Q14135	VGLL4_HUMAN	vestigial like 4 isoform b	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1				LUSC - Lung squamous cell carcinoma(1;0.089)|Lung(1;0.111)		GGGGAGGGCCGGTGCGGTGAC	0.592			NA											3	104					0	0	0.004672	0	0
RFTN1	23180	broad.mit.edu	37	3	16411726	16411726	+	Missense_Mutation	SNP	T	T	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:16411726T>C	uc003cay.2	-	6	1169	c.887A>G	c.(886-888)TAC>TGC	p.Y296C	RFTN1_uc010hes.2_Missense_Mutation_p.Y260C	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	296						plasma membrane				ovary(3)|central_nervous_system(1)	4						GGTGACAGGGTAGTATTGCCG	0.502			NA											75	171					0	0	0.048971	0	0
KAT2B	8850	broad.mit.edu	37	3	20136892	20136892	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:20136892C>T	uc003cbq.2	+	3	1014	c.568C>T	c.(568-570)CTA>TTA	p.L190L		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	190					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTATTTCTATCTATTTAAGGT	0.368			NA											6	15					0	0	0.038147	0	0
SLC4A7	9497	broad.mit.edu	37	3	27453205	27453205	+	Missense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:27453205G>A	uc003cdv.2	-	12	1738	c.1667C>T	c.(1666-1668)TCT>TTT	p.S556F	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.S437F|SLC4A7_uc011aww.1_Missense_Mutation_p.S565F|SLC4A7_uc011awx.1_Missense_Mutation_p.S552F|SLC4A7_uc011awy.1_Missense_Mutation_p.S548F|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.S437F|SLC4A7_uc011axb.1_Missense_Mutation_p.S552F|SLC4A7_uc010hfl.2_Missense_Mutation_p.S106F|SLC4A7_uc003cdw.2_Missense_Mutation_p.S432F	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	556	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						TGTGGGGGTAGATCCATTGTG	0.418			NA											6	30					0	0	0.02938	0	0
SCN5A	6331	broad.mit.edu	37	3	38616870	38616870	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:38616870C>T	uc003cio.2	-	20	3778	c.3584G>A	c.(3583-3585)CGC>CAC	p.R1195H	SCN5A_uc003cin.2_Missense_Mutation_p.R1194H|SCN5A_uc003cil.3_Missense_Mutation_p.R1195H|SCN5A_uc010hhi.2_Missense_Mutation_p.R1195H|SCN5A_uc010hhk.2_Missense_Mutation_p.R1194H|SCN5A_uc011ayr.1_Missense_Mutation_p.R1141H|SCN5A_uc010hhj.1_Missense_Mutation_p.R805H	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1195					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCAGGTCTTGCGCAACCGCCA	0.612			NA											5	17					0	0	0.014758	0	0
SENP7	57337	broad.mit.edu	37	3	101049218	101049218	+	Missense_Mutation	SNP	C	C	A	rs61761868	byFrequency	TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:101049218C>A	uc003dut.2	-	20	2822	c.2711G>T	c.(2710-2712)CGT>CTT	p.R904L	SENP7_uc003duu.2_Missense_Mutation_p.R839L|SENP7_uc003duv.2_Missense_Mutation_p.R871L|SENP7_uc003duw.2_Missense_Mutation_p.R838L|SENP7_uc003dux.2_Missense_Mutation_p.R740L|SENP7_uc003dus.2_Missense_Mutation_p.R92L	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	904	Protease.				proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						CGAAGTAGTACGTAGATCATT	0.303			NA											13	26					0.00185496	0.00195561	0.105934	1	0
SENP7	57337	broad.mit.edu	37	3	101060531	101060531	+	Silent	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:101060531A>G	uc003dut.2	-	15	2310	c.2199T>C	c.(2197-2199)GAT>GAC	p.D733D	SENP7_uc003duu.2_Silent_p.D668D|SENP7_uc003duv.2_Silent_p.D700D|SENP7_uc003duw.2_Silent_p.D667D|SENP7_uc003dux.2_Silent_p.D569D	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	733					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						GCCATTCTTCATCTGGATTAG	0.433			NA											18	37					0	0	0.055883	0	0
ABTB1	80325	broad.mit.edu	37	3	127395254	127395254	+	Missense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:127395254G>A	uc003ejt.2	+	5	548	c.460G>A	c.(460-462)GTG>ATG	p.V154M	ABTB1_uc003ejr.2_Missense_Mutation_p.V12M|ABTB1_uc003ejs.2_Missense_Mutation_p.V129M|ABTB1_uc003eju.2_Missense_Mutation_p.V12M|ABTB1_uc010hsm.2_5'Flank	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	154	BTB 1.					cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						CAAGAGTGTCGTGGTTCTCAG	0.582			NA											19	26					0	0	0.043863	0	0
MED12L	116931	broad.mit.edu	37	3	151101588	151101588	+	Missense_Mutation	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr3:151101588G>C	uc003eyp.2	+	32	4635	c.4597G>C	c.(4597-4599)GTG>CTG	p.V1533L	MED12L_uc011bnz.1_Missense_Mutation_p.V1393L|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.V696L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1533					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTTTGACACGGTGCAGAGGAG	0.403			NA											12	34					0	0	0.105934	0	0
GABRA4	2557	broad.mit.edu	37	4	46967031	46967032	+	Missense_Mutation	DNP	CG	CG	AA	rs112484538		TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr4:46967031_46967032CG>AA	uc003gxg.2	-	8	1228_1229	c.1089_1090CG>TT	c.(1087-1092)CCCGCT>CCTTCT	p.A364S		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	364	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ACTGGAGCAGCGGGAACTTCCT	0.426	Ovarian(6;283 369 8234 12290 33402)		NA											13	48					0	0	0.004672	0	0
CSN1S1	1446	broad.mit.edu	37	4	70810659	70810659	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr4:70810659C>T	uc003hep.1	+	15	543	c.494C>T	c.(493-495)TCC>TTC	p.S165F	CSN1S1_uc003heq.1_Missense_Mutation_p.S156F|CSN1S1_uc003her.1_Missense_Mutation_p.S157F	NM_001890	NP_001881	P47710	CASA1_HUMAN	casein alpha s1 isoform 1	165						extracellular region	protein binding|transporter activity				0						CCACCGTTTTCCGACATCTCC	0.418			NA											83	44					0	0	0.048971	0	0
ZNF131	7690	broad.mit.edu	37	5	43174701	43174701	+	Silent	SNP	A	A	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:43174701A>T	uc011cpw.1	+	7	1374	c.1338A>T	c.(1336-1338)TCA>TCT	p.S446S	ZNF131_uc003jnj.3_Silent_p.S167S|ZNF131_uc003jnk.2_Silent_p.S412S|ZNF131_uc003jnn.3_Silent_p.S167S|ZNF131_uc003jnl.1_Intron|ZNF131_uc010ivm.1_Intron	NM_003432	NP_003423	P52739	ZN131_HUMAN	zinc finger protein 131	446						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACAATATTTCAGAGCGTCTAG	0.388			NA											42	176					0	0	0.048971	0	0
RASGRF2	5924	broad.mit.edu	37	5	80408504	80408504	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:80408504G>A	uc003kha.1	+	14	1914	c.1914G>A	c.(1912-1914)CAG>CAA	p.Q638Q	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	638	N-terminal Ras-GEF.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		AAGTGCCCCAGATCCGTTATG	0.473			NA											6	213					0	0	0.038147	0	0
RASA1	5921	broad.mit.edu	37	5	86627281	86627281	+	Nonsense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:86627281C>A	uc003kiw.2	+	2	774	c.656C>A	c.(655-657)TCA>TAA	p.S219*	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Nonsense_Mutation_p.S42*|RASA1_uc011ctv.1_Nonsense_Mutation_p.S52*|RASA1_uc011ctw.1_Nonsense_Mutation_p.S53*|RASA1_uc010jaw.2_Nonsense_Mutation_p.S42*|RASA1_uc011ctu.1_Nonsense_Mutation_p.S219*	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1	219	SH2 1.				cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		TTTGTACTTTCATTTCTTAGC	0.388			NA											15	55					2.31682e-05	2.56169e-05	0.024245	1	0
PCDHB12	56124	broad.mit.edu	37	5	140588669	140588669	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:140588669G>T	uc003liz.2	+	1	379	c.190G>T	c.(190-192)GCT>TCT	p.A64S	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	64	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCGCGGGGGGCTCGGGTGGT	0.517			NA											50	54					5.22555e-25	7.17854e-25	0.048971	1	0
PCDHB12	56124	broad.mit.edu	37	5	140590252	140590252	+	Silent	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:140590252G>T	uc003liz.2	+	1	1962	c.1773G>T	c.(1771-1773)GCG>GCT	p.A591A	PCDHB12_uc011dak.1_Silent_p.A254A	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	591	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGTGGTGGCGGTGGACGGTG	0.706			NA											30	204					9.14704e-12	1.07241e-11	0.104719	1	0
PCDHB14	56122	broad.mit.edu	37	5	140603954	140603954	+	Missense_Mutation	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:140603954G>A	uc003ljb.2	+	1	877	c.877G>A	c.(877-879)GAA>AAA	p.E293K	PCDHB14_uc011dal.1_Missense_Mutation_p.E140K	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	293	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAAAACATTTGAAATTAATCC	0.378	Ovarian(141;50 1831 27899 33809 37648)		NA											16	13					0	0	0.024245	0	0
GNPDA1	10007	broad.mit.edu	37	5	141384676	141384676	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:141384676C>A	uc003lmf.3	-	4	1174	c.415G>T	c.(415-417)GGC>TGC	p.G139C	GNPDA1_uc003lmg.3_Missense_Mutation_p.G139C|GNPDA1_uc010jgh.2_Missense_Mutation_p.G139C|GNPDA1_uc003lmh.3_Missense_Mutation_p.G105C	NM_005471	NP_005462	P46926	GNPI1_HUMAN	glucosamine-6-phosphate deaminase 1	139					generation of precursor metabolites and energy|glucosamine catabolic process|N-acetylglucosamine metabolic process|single fertilization	cytoplasm	glucosamine-6-phosphate deaminase activity|hydrolase activity				0		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCATCAGGGCCGATGCCTATA	0.552			NA											10	23					9.70103e-10	1.11808e-09	0.069234	1	0
SLC26A2	1836	broad.mit.edu	37	5	149361032	149361032	+	Missense_Mutation	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:149361032G>C	uc003lrh.2	+	3	2144	c.1876G>C	c.(1876-1878)GTG>CTG	p.V626L		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	626	STAS.|Extracellular (Potential).					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			AGAAAAAGTAGTGACTCTTGG	0.383			NA											27	42					0	0	0.099896	0	0
ARSI	340075	broad.mit.edu	37	5	149677248	149677248	+	Silent	SNP	G	G	A	rs73268774	byFrequency	TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:149677248G>A	uc003lrv.2	-	2	1828	c.1239C>T	c.(1237-1239)ACC>ACT	p.T413T		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	413						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTGCACGGCGGTGTTCCAGA	0.647			NA											6	54					0	0	0.021553	0	0
ATP10B	23120	broad.mit.edu	37	5	159996679	159996679	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:159996679G>T	uc003lym.1	-	25	4609	c.3762C>A	c.(3760-3762)CAC>CAA	p.H1254Q	ATP10B_uc010jit.1_Missense_Mutation_p.H504Q	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1254	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCACGACTCCGTGGAAAATGG	0.478			NA											3	51					6.4e-05	6.85354e-05	0.004672	1	0
RNF130	55819	broad.mit.edu	37	5	179393827	179393827	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr5:179393827C>T	uc003mll.1	-	7	1536	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K	RNF130_uc003mlm.1_Missense_Mutation_p.E377K	NM_018434	NP_060904	Q86XS8	GOLI_HUMAN	ring finger protein 130 precursor	377	Cytoplasmic (Potential).				apoptosis	cytoplasm|integral to membrane|nucleus	ubiquitin-protein ligase activity|zinc ion binding			lung(2)|ovary(1)	3	all_cancers(89;5.49e-05)|all_epithelial(37;1.94e-05)|Renal(175;0.000159)|Lung NSC(126;0.00118)|all_lung(126;0.00212)	all_cancers(40;0.0294)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATGTTGATTTCTCCTGTTCTC	0.587	GBM(24;432 554 38471 39699 51728)		NA											6	29					0	0	0.021553	0	0
C2	717	broad.mit.edu	37	6	31896516	31896516	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr6:31896516C>T	uc003nyf.2	+	3	528	c.264C>T	c.(262-264)CGC>CGT	p.R88R	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Silent_p.R88R|C2_uc010jtk.2_Intron|C2_uc011doq.1_Silent_p.R59R|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	88	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CAGCTGTGCGCTGTCCAGCCC	0.542			NA											56	65					0	0	0.048971	0	0
C6orf138	442213	broad.mit.edu	37	6	47847177	47847177	+	Missense_Mutation	SNP	A	A	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr6:47847177A>T	uc011dwm.1	-	3	1437	c.1352T>A	c.(1351-1353)GTC>GAC	p.V451D	C6orf138_uc011dwn.1_Missense_Mutation_p.V215D	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	468	Helical; (Potential).					integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						ATAGAGGATGACAACAAATGG	0.438			NA											19	31					0	0	0.038395	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904239	73904239	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr6:73904239G>T	uc003pgk.2	+	14	2248	c.1901G>T	c.(1900-1902)GGC>GTC	p.G634V	KCNQ5_uc011dyh.1_Missense_Mutation_p.G653V|KCNQ5_uc011dyi.1_Missense_Mutation_p.G644V|KCNQ5_uc010kat.2_Missense_Mutation_p.G625V|KCNQ5_uc011dyj.1_Missense_Mutation_p.G524V|KCNQ5_uc011dyk.1_Missense_Mutation_p.G384V	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	634					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CTTCGGAAAGGCTCTGCCTCA	0.453	GBM(142;1375 1859 14391 23261 44706)		NA											19	51					3.99206e-14	4.98092e-14	0.043863	1	0
GPR63	81491	broad.mit.edu	37	6	97246786	97246786	+	Silent	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr6:97246786C>T	uc010kcl.2	-	3	1300	c.822G>A	c.(820-822)TTG>TTA	p.L274L	GPR63_uc003pou.2_Silent_p.L274L	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	274	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		TATGGATCCTCAAGGCATTGT	0.458			NA											34	15					0	0	0.092188	0	0
TTLL2	83887	broad.mit.edu	37	6	167753608	167753608	+	Missense_Mutation	SNP	A	A	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr6:167753608A>T	uc003qvs.1	+	3	308	c.220A>T	c.(220-222)ATG>TTG	p.M74L	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	74					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		ACCTCATTTGATGGCGGAAGA	0.512			NA											28	9					0	0	0.045705	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6078292	6078292	+	Missense_Mutation	SNP	T	T	C	rs139313112		TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr7:6078292T>C	uc003spp.2	-	10	1276	c.1130A>G	c.(1129-1131)CAC>CGC	p.H377R	EIF2AK1_uc003spq.2_Missense_Mutation_p.H376R|EIF2AK1_uc011jwm.1_Missense_Mutation_p.H253R	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	377	Protein kinase.				negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		CAGCATCAGGTGGTACTGTGC	0.448			NA											38	66					0	0	0.080422	0	0
C1GALT1	56913	broad.mit.edu	37	7	7283267	7283267	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr7:7283267G>T	uc010ktn.2	+	4	1224	c.1001G>T	c.(1000-1002)AGA>ATA	p.R334I	C1GALT1_uc003sra.2_Missense_Mutation_p.R334I|uc003srb.1_5'Flank	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	334	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TATTTATACAGATATCAACCT	0.328			NA											34	79					2.05212e-20	2.70959e-20	0.080422	1	0
ZNF479	90827	broad.mit.edu	37	7	57187575	57187575	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr7:57187575G>T	uc010kzo.2	-	5	1818	c.1547C>A	c.(1546-1548)ACT>AAT	p.T516N		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	516					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTTCTCTCCAGTGTGAATTAT	0.343			NA											10	20					3.86212e-05	4.20199e-05	0.069234	1	0
CHRM2	1129	broad.mit.edu	37	7	136700178	136700178	+	Missense_Mutation	SNP	G	G	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr7:136700178G>C	uc003vtf.1	+	4	1189	c.566G>C	c.(565-567)GGT>GCT	p.G189A	CHRM2_uc003vtg.1_Missense_Mutation_p.G189A|CHRM2_uc003vtj.1_Missense_Mutation_p.G189A|CHRM2_uc003vtk.1_Missense_Mutation_p.G189A|CHRM2_uc003vtl.1_Missense_Mutation_p.G189A|CHRM2_uc003vtm.1_Missense_Mutation_p.G189A|CHRM2_uc003vti.1_Missense_Mutation_p.G189A|CHRM2_uc003vto.1_Missense_Mutation_p.G189A|CHRM2_uc003vtn.1_Missense_Mutation_p.G189A|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	189	Helical; Name=5; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GTCACCTTTGGTACGGCTATT	0.478			NA											7	94					0	0	0.038147	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269579	150269579	+	Missense_Mutation	SNP	T	T	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr7:150269579T>C	uc003whl.2	+	3	503	c.421T>C	c.(421-423)TTT>CTT	p.F141L	GIMAP4_uc011kuu.1_Missense_Mutation_p.F2L|GIMAP4_uc011kuv.1_Missense_Mutation_p.F155L	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	141							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTGAAAATGTTTGGAGAGAG	0.483			NA											27	41					0	0	0.041601	0	0
CSMD1	64478	broad.mit.edu	37	8	2949067	2949067	+	Missense_Mutation	SNP	C	C	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr8:2949067C>G	uc011kwk.1	-	48	7649	c.7259G>C	c.(7258-7260)AGT>ACT	p.S2420T	CSMD1_uc011kwj.1_Missense_Mutation_p.S1749T|CSMD1_uc010lrg.2_Missense_Mutation_p.S488T	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2420	CUB 14.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCCTTTCTTACTGGTGGCATG	0.348			NA											18	39					0	0	0.0333	0	0
CSMD1	64478	broad.mit.edu	37	8	4851912	4851912	+	Silent	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr8:4851912C>A	uc011kwk.1	-	1	417	c.27G>T	c.(25-27)TCG>TCT	p.S9S		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	9						integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCAGGAGCAGCGACTGGAATC	0.632			NA											13	33					3.52763e-06	3.93244e-06	0.0333	1	0
EYA1	2138	broad.mit.edu	37	8	72184036	72184036	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr8:72184036C>T	uc003xys.3	-	9	1210	c.923G>A	c.(922-924)CGA>CAA	p.R308Q	EYA1_uc003xyr.3_Missense_Mutation_p.R303Q|EYA1_uc003xyt.3_Missense_Mutation_p.R275Q|EYA1_uc010lzf.2_Missense_Mutation_p.R235Q|EYA1_uc003xyu.2_Missense_Mutation_p.R308Q|EYA1_uc011lfe.1_Missense_Mutation_p.R302Q|EYA1_uc003xyv.2_Missense_Mutation_p.R186Q	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	308					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			ATTGTTTCTTCGGCCCCGTCC	0.473			NA											53	158					0	0	0.048971	0	0
TRPA1	8989	broad.mit.edu	37	8	72945999	72945999	+	Silent	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr8:72945999G>T	uc003xza.2	-	23	2923	c.2748C>A	c.(2746-2748)ATC>ATA	p.I916I	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	916	Extracellular (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	CTCGATAATTGATATCTCCTA	0.413			NA											10	71					7.48243e-07	8.41e-07	0.058154	1	0
CA3	761	broad.mit.edu	37	8	86357439	86357439	+	Missense_Mutation	SNP	A	A	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr8:86357439A>C	uc003ydj.2	+	5	582	c.499A>C	c.(499-501)AAG>CAG	p.K167Q	CA3_uc011lfv.1_RNA	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	167					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						GGACAAGATTAAGACAAAGGT	0.313			NA											23	22					0	0	0.099896	0	0
CNBD1	168975	broad.mit.edu	37	8	88249280	88249280	+	Missense_Mutation	SNP	G	G	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr8:88249280G>T	uc003ydy.2	+	6	759	c.711G>T	c.(709-711)TGG>TGT	p.W237C		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	237										ovary(3)	3						GCTTCATTTGGAGTGAAGAAT	0.393			NA											18	37					1.56452e-12	1.89978e-12	0.043863	1	0
SNX31	169166	broad.mit.edu	37	8	101601110	101601110	+	Missense_Mutation	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr8:101601110A>G	uc003yjr.2	-	11	1227	c.1076T>C	c.(1075-1077)GTT>GCT	p.V359A	SNX31_uc011lha.1_Missense_Mutation_p.V154A|SNX31_uc011lhb.1_Missense_Mutation_p.V260A	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	359					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			GGTGTAAATAACAAACCACTG	0.488			NA											14	78					0	0	0.028581	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18504846	18504846	+	Missense_Mutation	SNP	C	C	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr9:18504846C>A	uc003zne.3	+	2	210	c.83C>A	c.(82-84)TCC>TAC	p.S28Y	ADAMTSL1_uc003znb.2_Missense_Mutation_p.S28Y|ADAMTSL1_uc003znc.3_Missense_Mutation_p.S28Y	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	28						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		ACCGCACGCTCCGAGGAGGAC	0.582			NA											52	22					3.56336e-21	4.79819e-21	0.048971	1	0
TRPM3	80036	broad.mit.edu	37	9	73213399	73213399	+	Missense_Mutation	SNP	C	C	T			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr9:73213399C>T	uc004aid.2	-	20	3192	c.2948G>A	c.(2947-2949)CGT>CAT	p.R983H	TRPM3_uc004ahu.2_Missense_Mutation_p.R813H|TRPM3_uc004ahv.2_Missense_Mutation_p.R785H|TRPM3_uc004ahw.2_Missense_Mutation_p.R855H|TRPM3_uc004ahx.2_Missense_Mutation_p.R842H|TRPM3_uc004ahy.2_Missense_Mutation_p.R845H|TRPM3_uc004ahz.2_Missense_Mutation_p.R832H|TRPM3_uc004aia.2_Missense_Mutation_p.R830H|TRPM3_uc004aib.2_Missense_Mutation_p.R820H|TRPM3_uc004aic.2_Missense_Mutation_p.R983H	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1008	Helical; (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GTCTAGGAGACGGATATACCA	0.448			NA											65	57					0	0	0.048971	0	0
CEP78	84131	broad.mit.edu	37	9	80869844	80869844	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr9:80869844G>A	uc004akx.2	+	11	1620	c.1344G>A	c.(1342-1344)GTG>GTA	p.V448V	CEP78_uc004aky.3_Silent_p.V449V|CEP78_uc010mpp.2_Silent_p.V449V	NM_032171	NP_115547	Q5JTW2	CEP78_HUMAN	centrosomal protein 78kDa isoform b	448					G2/M transition of mitotic cell cycle	centrosome|cytosol				ovary(1)	1						TTCATGAAGTGCCTGAGAAAA	0.373			NA											14	15					0	0	0.020292	0	0
FOXE1	2304	broad.mit.edu	37	9	100617228	100617228	+	Silent	SNP	G	G	A			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr9:100617228G>A	uc004axu.2	+	1	1692	c.1032G>A	c.(1030-1032)GGG>GGA	p.G344G		NM_004473	NP_004464	O00358	FOXE1_HUMAN	forkhead box E1	344					cell migration|embryonic organ morphogenesis|hair follicle morphogenesis|hard palate development|lens morphogenesis in camera-type eye|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|peripheral nervous system development|pharynx development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|soft palate development|thymus development|thyroid gland development|thyroid hormone generation	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		Acute lymphoblastic leukemia(62;0.158)				ACCCTGGCGGGCAGCTCGGAG	0.692			NA											3	21					0	0	0.009096	0	0
DMD	1756	broad.mit.edu	37	X	32466631	32466631	+	Missense_Mutation	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chrX:32466631A>G	uc004dda.1	-	27	3972	c.3728T>C	c.(3727-3729)CTA>CCA	p.L1243P	DMD_uc004dcz.2_Missense_Mutation_p.L1120P|DMD_uc004dcy.1_Missense_Mutation_p.L1239P|DMD_uc004ddb.1_Missense_Mutation_p.L1235P|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1243	Spectrin 8.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GTTGGTGGTTAGAGTTTCAAG	0.418			NA											13	25					0	0	0.105934	0	0
RBM10	8241	broad.mit.edu	37	X	47045017	47045017	+	Silent	SNP	A	A	G			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chrX:47045017A>G	uc004dhf.2	+	20	2722	c.2343A>G	c.(2341-2343)TCA>TCG	p.S781S	RBM10_uc004dhg.2_Silent_p.S703S|RBM10_uc004dhh.2_Silent_p.S780S|RBM10_uc010nhq.2_Silent_p.S704S|RBM10_uc004dhi.2_Silent_p.S846S	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	781	C2H2-type; atypical.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						AGCAGCTCTCAGGGCTCCACA	0.622	Melanoma(171;120 2705 19495 39241)		NA											4	1					0	0	0.014758	0	0
RHOXF2B	727940	broad.mit.edu	37	X	119210983	119210984	+	Missense_Mutation	DNP	TG	TG	CT			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chrX:119210983_119210984TG>CT	uc004esj.3	-	2	539_540	c.349_350CA>AG	c.(349-351)CAG>AGG	p.Q117R	uc004esi.1_Intron	NM_032498	NP_115887	P0C7M4	RHF2B_HUMAN	Rhox homeobox family, member 2	117						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGCGAATACTGCTGCCCAGGT	0.663			NA											14	2					0	0	0.004672	0	0
MAGEA11	4110	broad.mit.edu	37	X	148797795	148797795	+	Missense_Mutation	SNP	T	T	C			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chrX:148797795T>C	uc004fdq.2	+	5	751	c.649T>C	c.(649-651)TTT>CTT	p.F217L	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.F188L	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	217						cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					CCCTGAGTCCTTTTCCCAAGA	0.488			NA											3	118					0	0	0.014758	0	0
BCL3	602	broad.mit.edu	37	19	45262737	45262737	+	Frame_Shift_Del	DEL	C	C	-			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr19:45262737delC	uc010xxe.1	+	9	1300	c.1230delC	c.(1228-1230)GACfs	p.D410fs		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	410	Pro/Ser-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				CCCCCAGGGACCCCCCTGGAT	0.547			NA	T	IGH@	CLL 								7	960	---	---	---	---	NA	NA	NA	NA	NA
F13A1	2162	broad.mit.edu	37	6	6145974	6145974	+	Frame_Shift_Del	DEL	C	C	-			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr6:6145974delC	uc003mwv.2	-	15	2200	c.2077delG	c.(2077-2079)GAAfs	p.E693fs	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	693					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CACACTTCTTCCCACTGCACG	0.537			NA											55	72	---	---	---	---	NA	NA	NA	NA	NA
PNPLA7	375775	broad.mit.edu	37	9	140417297	140417301	+	Frame_Shift_Del	DEL	GTGCA	GTGCA	-			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	GTGCA	GTGCA	-	-	GTGCA	GTGCA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chr9:140417297_140417301delGTGCA	uc004cnf.2	-	8	1018_1022	c.681_685delTGCAC	c.(679-687)GCTGCACCTfs	p.A227fs	PNPLA7_uc011mfa.1_5'UTR|PNPLA7_uc010ncj.1_Frame_Shift_Del_p.A252fs	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	227_229	cNMP 1.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GTTTTGTAAGGTGCAGCATGGCCCT	0.605			NA											19	86	---	---	---	---	NA	NA	NA	NA	NA
YY2	404281	broad.mit.edu	37	X	21857869	21857871	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-69-7764-01A-11D-2167-08	TCGA-69-7764-10A-01D-2167-08	TGG	TGG	-	-	TGG	TGG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	436121d4-a80d-4281-8e9d-9decd193c2db	37e8f183-f2f5-4d03-b5b5-6b2ca3c2c15f	g.chrX:21857869_21857871delTGG	uc010nfq.2	+	1	214_216	c.17_19delTGG	c.(16-21)CTGGTG>CTG	p.V11del	MBTPS2_uc004dae.2_In_Frame_Del_p.V11del|MBTPS2_uc004dab.2_In_Frame_Del_p.V11del	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	Error:Variant_position_missing_in_O15391_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CCGGTGTCGCTGGTGGTGGTGGT	0.685			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
