Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LRRC7	57554	broad.mit.edu	37	1	70482195	70482195	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr1:70482195C>A	uc001dep.2	+	12	1214	c.1184C>A	c.(1183-1185)GCT>GAT	p.A395D	LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	395	LRR 17.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GAGCTTGCAGCTTTGTGGCTT	0.289			NA											7	38					0.000157383	0.00032192	0.00308	1	0
KCNA2	3737	broad.mit.edu	37	1	111145958	111145958	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr1:111145958T>C	uc001dzu.2	-	2	1943	c.1447A>G	c.(1447-1449)ACC>GCC	p.T483A	KCNA2_uc009wfv.1_Intron|KCNA2_uc009wfw.2_Missense_Mutation_p.T483A	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	483						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		TTAGCCAAGGTACAGTTGGCT	0.383	Pancreas(18;568 735 10587 23710 36357)		NA											22	59					0	0	0.001882	0	0
INSRR	3645	broad.mit.edu	37	1	156814587	156814587	+	Missense_Mutation	SNP	T	T	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr1:156814587T>G	uc010pht.1	-	13	2740	c.2486A>C	c.(2485-2487)AAG>ACG	p.K829T	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	829	Fibronectin type-III 3.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GACACTGTTCTTGCTGGAGGC	0.592			NA											3	48					0	0	0.004672	0	0
FCRL5	83416	broad.mit.edu	37	1	157490931	157490931	+	Silent	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr1:157490931C>T	uc001fqu.2	-	11	2549	c.2391G>A	c.(2389-2391)TCG>TCA	p.S797S	FCRL5_uc009wsm.2_Silent_p.S797S	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	797	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CAGAGGGGGACGACCTATTTC	0.592			NA											15	113					0	0	0.00499	0	0
SPTA1	6708	broad.mit.edu	37	1	158614140	158614141	+	Missense_Mutation	DNP	CG	CG	TT			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr1:158614140_158614141CG>TT	uc001fst.1	-	30	4439_4440	c.4240_4241CG>AA	c.(4240-4242)CGT>AAT	p.R1414N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1414	Spectrin 14.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGAATTCTCACGTGCCACCATC	0.47			NA											4	61					0	0	0.004672	0	0
RALGPS2	55103	broad.mit.edu	37	1	178790800	178790800	+	Silent	SNP	A	A	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr1:178790800A>G	uc001glz.2	+	7	779	c.441A>G	c.(439-441)CTA>CTG	p.L147L	RALGPS2_uc001gly.1_Silent_p.L147L|RALGPS2_uc010pnb.1_Silent_p.L147L	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	147	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						TTTCTGGCCTACAGAGTGCCC	0.388			NA											34	80					0	0	0.004878	0	0
SUV39H2	79723	broad.mit.edu	37	10	14939251	14939251	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr10:14939251A>G	uc001inh.2	+	2	460	c.404A>G	c.(403-405)GAT>GGT	p.D135G	SUV39H2_uc001ing.2_Intron|SUV39H2_uc001ini.2_Missense_Mutation_p.D135G|SUV39H2_uc001inj.2_Missense_Mutation_p.D135G	NM_024670	NP_078946	Q9H5I1	SUV92_HUMAN	suppressor of variegation 3-9 homolog 2	195	Pre-SET.				cell cycle|cell differentiation|chromatin assembly or disassembly|chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin|chromosome, centromeric region|nucleus	histone methyltransferase activity (H3-K9 specific)|protein binding|zinc ion binding			breast(2)|ovary(1)	3						TCATGCACAGATTGCTTCTTT	0.393			NA											9	81					0	0	0.006214	0	0
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529		TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr12:25398284C>T	uc001rgp.1	-	2	216	c.35G>A	c.(34-36)GGT>GAT	p.G12D	KRAS_uc001rgq.1_Missense_Mutation_p.G12D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12N(6)|p.G12G(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCCTACGCCACCAGCTCCAAC	0.348	Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			4	17					0	0	0.001168	0	0
ADCY6	112	broad.mit.edu	37	12	49166147	49166147	+	Silent	SNP	C	C	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr12:49166147C>A	uc001rsh.3	-	17	3378	c.2718G>T	c.(2716-2718)GCG>GCT	p.A906A	ADCY6_uc001rsj.3_Silent_p.A906A|ADCY6_uc001rsi.3_Silent_p.A853A|ADCY6_uc010slw.1_Silent_p.A137A	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	906	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						ACAGCGCCAGCGCAAACACCA	0.562			NA											6	60					3.59834e-05	7.59024e-05	0.001168	1	0
HOXC11	3227	broad.mit.edu	37	12	54369022	54369022	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr12:54369022T>A	uc001sem.2	+	2	856	c.740T>A	c.(739-741)CTG>CAG	p.L247Q		NM_014212	NP_055027	O43248	HXC11_HUMAN	homeobox C11	247	Homeobox.				endoderm development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATCCGGGAACTGGAGCGAGAG	0.567			NA	T	NUP98	AML								8	47					0	0	0.004482	0	0
SPERT	220082	broad.mit.edu	37	13	46276977	46276977	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr13:46276977T>C	uc001van.1	+	2	223	c.143T>C	c.(142-144)GTG>GCG	p.V48A	SPERT_uc001vao.2_5'Flank	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	48						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		CCAATCAGTGTGGTTCTACCT	0.408			NA											8	27					0	0	0.004482	0	0
DHRS2	10202	broad.mit.edu	37	14	24108035	24108035	+	Splice_Site	SNP	G	G	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr14:24108035G>C	uc001wkt.3	+	2	410	c.-37_splice	c.e2-1		DHRS2_uc010aku.1_Splice_Site|DHRS2_uc001wku.3_Splice_Site|DHRS2_uc010akv.2_Splice_Site|DHRS2_uc001wkv.3_Splice_Site	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1						C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		CTTTCCCCCAGGCCTGATTCA	0.517			NA											8	80					0	0	0.004482	0	0
PCNX	22990	broad.mit.edu	37	14	71555974	71555974	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr14:71555974T>A	uc001xmo.2	+	30	5950	c.5504T>A	c.(5503-5505)ATT>AAT	p.I1835N	PCNX_uc010are.1_Missense_Mutation_p.I1724N|PCNX_uc010arf.1_Missense_Mutation_p.I623N	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1835						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		ATTTCTTCAATTCGAGATGAA	0.363			NA											4	44					0	0	0.000248	0	0
POMT2	29954	broad.mit.edu	37	14	77743800	77743800	+	Silent	SNP	A	A	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr14:77743800A>G	uc001xti.2	-	21	2373	c.2172T>C	c.(2170-2172)GCT>GCC	p.A724A	POMT2_uc001xth.1_Silent_p.A422A	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	724					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		CCATCCCGTAAGCCAGAGGGT	0.567			NA											3	62					0	0	0.000248	0	0
ABCC1	4363	broad.mit.edu	37	16	16208863	16208863	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr16:16208863T>C	uc010bvi.2	+	23	3495	c.3320T>C	c.(3319-3321)GTT>GCT	p.V1107A	ABCC1_uc010bvj.2_Missense_Mutation_p.V1048A|ABCC1_uc010bvk.2_Missense_Mutation_p.V1051A|ABCC1_uc010bvl.2_Missense_Mutation_p.V1107A|ABCC1_uc010bvm.2_Missense_Mutation_p.V992A|ABCC1_uc002del.3_Missense_Mutation_p.V1001A	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	1107	Helical; Name=14.|ABC transmembrane type-1 2.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GCCTGCATCGTTATCCTGCTG	0.567			NA											6	45					0	0	0.001984	0	0
ABCC6	368	broad.mit.edu	37	16	16248520	16248520	+	Silent	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr16:16248520C>T	uc002den.3	-	29	4210	c.4173G>A	c.(4171-4173)CTG>CTA	p.L1391L	ABCC6_uc010bvo.2_RNA|ABCC6_uc002dem.2_Silent_p.L143L	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1391	Cytoplasmic (By similarity).|ABC transporter 2.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		ACTTGTACTGCAGCTGGCCGG	0.657			NA											4	30					0	0	0.000602	0	0
MYH4	4622	broad.mit.edu	37	17	10366910	10366910	+	Silent	SNP	G	G	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr17:10366910G>A	uc002gmn.2	-	8	810	c.699C>T	c.(697-699)TTC>TTT	p.F233F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	233	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGCATTGCCGAAGGCTTCCA	0.423			NA											11	69					0	0	0.001368	0	0
MYO19	80179	broad.mit.edu	37	17	34858967	34858967	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr17:34858967C>A	uc010wcy.1	-	22	3042	c.2050G>T	c.(2050-2052)GAC>TAC	p.D684Y	MYO19_uc002hmw.2_Missense_Mutation_p.D484Y|MYO19_uc010cuu.2_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	684	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TATGGGCTGTCGGGGCCAGAG	0.403			NA											14	139					0.000219431	0.000442138	0.00245	1	0
ZNF208	7757	broad.mit.edu	37	19	22171640	22171640	+	Silent	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr19:22171640C>T	uc002nqp.2	-	2	224	c.75G>A	c.(73-75)CAG>CAA	p.Q25Q	ZNF208_uc002nqo.1_Silent_p.Q25Q|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATAAATTCTGCTGTGCAGTGT	0.398			NA											7	118					0	0	0.004482	0	0
ZNF571	51276	broad.mit.edu	37	19	38056962	38056962	+	Nonsense_Mutation	SNP	G	G	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr19:38056962G>C	uc002ogt.2	-	4	469	c.368C>G	c.(367-369)TCA>TGA	p.S123*	uc002ogm.2_RNA|uc002ogn.2_RNA|ZNF540_uc002ogo.2_RNA|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Nonsense_Mutation_p.S123*	NM_016536	NP_057620	Q7Z3V5	ZN571_HUMAN	zinc finger protein 571	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGAAGAGGTTGAATGACTTTC	0.403			NA											9	74					0	0	0.004482	0	0
PTOV1	53635	broad.mit.edu	37	19	50360330	50360330	+	Silent	SNP	C	C	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr19:50360330C>G	uc002pqf.1	+	6	827	c.657C>G	c.(655-657)CCC>CCG	p.P219P	PTOV1_uc002ppz.3_RNA|PTOV1_uc002pqb.3_Silent_p.P187P|PTOV1_uc002pqa.2_RNA|PTOV1_uc002pqc.1_RNA|PTOV1_uc002pqd.2_RNA|PTOV1_uc002pqe.1_RNA	NM_017432	NP_059128	Q86YD1	PTOV1_HUMAN	prostate tumor overexpressed 1	219	Interaction with FLOT1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|plasma membrane					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.0132)		GCCTCATCCCCTACGACCAGA	0.622			NA											29	186					0	0	0.008361	0	0
LILRB4	11006	broad.mit.edu	37	19	55177869	55177869	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr19:55177869G>A	uc002qgp.2	+	9	1332	c.970G>A	c.(970-972)GTC>ATC	p.V324I	LILRB4_uc002qgq.2_Missense_Mutation_p.V324I|LILRB4_uc002qgr.2_Missense_Mutation_p.V365I|LILRB4_uc010ert.2_Missense_Mutation_p.V365I|LILRB4_uc010eru.2_Missense_Mutation_p.V353I	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	324	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		AGCTGCTGACGTCCAGGGAGA	0.582			NA											5	47					0	0	0.000602	0	0
PRKRA	8575	broad.mit.edu	37	2	179315119	179315119	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr2:179315119C>T	uc002umf.2	-	2	286	c.85G>A	c.(85-87)GCT>ACT	p.A29T	PRKRA_uc002umd.2_Missense_Mutation_p.A4T|PRKRA_uc002ume.2_Missense_Mutation_p.A18T|PRKRA_uc002umg.2_5'UTR|DFNB59_uc002umi.3_5'Flank|DFNB59_uc002umj.3_5'Flank	NM_003690	NP_003681	O75569	PRKRA_HUMAN	protein kinase, interferon-inducible double	29	Sufficient for self-association and interaction with TARBP2.				immune response|negative regulation of cell proliferation|production of siRNA involved in RNA interference|response to virus	perinuclear region of cytoplasm	double-stranded RNA binding|enzyme activator activity|protein homodimerization activity			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.00634)|all cancers(119;0.0265)			CCTGGCTTAGCTGTTATCATC	0.428	Melanoma(200;68 3001 23825 48764)		NA											9	173					0	0	0.000978	0	0
PARD3B	117583	broad.mit.edu	37	2	206364756	206364756	+	Splice_Site	SNP	G	G	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr2:206364756G>T	uc002var.1	+	21	3387	c.3180_splice	c.e21+1	p.W1060_splice	PARD3B_uc002vao.1_Splice_Site_p.W959_splice|PARD3B_uc002vap.1_Splice_Site_p.W998_splice|PARD3B_uc002vaq.1_Splice_Site_p.W991_splice	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform						cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CCTACTCTGGGTAAGCGCATG	0.418			NA											17	86					3.32936e-07	7.49106e-07	0.006122	1	0
UGT1A10	54575	broad.mit.edu	37	2	234545239	234545239	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr2:234545239A>G	uc002vur.2	+	1	117	c.71A>G	c.(70-72)GAG>GGG	p.E24G	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.E24G	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	24					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		GGCTTTGCCGAGGCAGGGAAG	0.592			NA											16	104					0	0	0.004007	0	0
FRG1B	284802	broad.mit.edu	37	20	29625934	29625934	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr20:29625934C>T	uc010ztl.1	+	2	120	c.88C>T	c.(88-90)CAT>TAT	p.H30Y	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ACTTGTTGGGCATTCAGATGC	0.338			NA											6	30					0	0	0.008291	0	0
PTPRT	11122	broad.mit.edu	37	20	41101003	41101003	+	Silent	SNP	G	G	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr20:41101003G>C	uc002xkg.2	-	8	1537	c.1353C>G	c.(1351-1353)GGC>GGG	p.G451G	PTPRT_uc010ggj.2_Silent_p.G451G	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	451	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGGGGCGCAGGCCTCGCAGGG	0.602			NA											4	78					0	0	0.000602	0	0
GMEB2	26205	broad.mit.edu	37	20	62236177	62236177	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr20:62236177C>G	uc002yfp.1	-	2	627	c.148G>C	c.(148-150)GAT>CAT	p.D50H	GMEB2_uc002yfo.1_5'UTR|GMEB2_uc002yfq.1_Missense_Mutation_p.D50H	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	50					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			TCCATGTTATCTTCCGTCAGG	0.572			NA											5	98					0	0	0.001168	0	0
KRTAP13-4	284827	broad.mit.edu	37	21	31802689	31802689	+	Silent	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr21:31802689C>T	uc011acw.1	+	1	96	c.96C>T	c.(94-96)AGC>AGT	p.S32S		NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4	32						intermediate filament					0						TGGTCTACAGCACTGCCCTCT	0.597	NSCLC(196;2401 3038 18004 35753)		NA											11	92					0	0	0.008291	0	0
SUMO3	6612	broad.mit.edu	37	21	46226945	46226945	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr21:46226945T>C	uc002zfz.1	-	4	394	c.233A>G	c.(232-234)GAG>GGG	p.E78G	SUMO3_uc011afi.1_Missense_Mutation_p.E116G|SUMO3_uc002zga.1_Missense_Mutation_p.R95G	NM_006936	NP_008867	P55854	SUMO3_HUMAN	small ubiquitin-like modifier protein 3	78	Ubiquitin-like.				protein sumoylation	cytoplasm|kinetochore	protein binding				0				Colorectal(79;0.058)		GTCCTCGTCCTCCATCTCCAG	0.602			NA											3	54					0	0	0.004672	0	0
TRMT2A	27037	broad.mit.edu	37	22	20102885	20102885	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr22:20102885T>A	uc002zrk.1	-	5	1009	c.794A>T	c.(793-795)TAC>TTC	p.Y265F	TRMT2A_uc002zrl.1_Missense_Mutation_p.Y265F|TRMT2A_uc002zrm.1_Missense_Mutation_p.Y87F|TRMT2A_uc002zrn.1_Missense_Mutation_p.Y265F|TRMT2A_uc011ahk.1_3'UTR|RANBP1_uc011ahl.1_5'Flank|RANBP1_uc002zro.1_5'Flank|RANBP1_uc002zrp.2_5'Flank	NM_182984	NP_892029	Q8IZ69	TRM2A_HUMAN	HpaII tiny fragments locus 9C	265					RNA processing		nucleotide binding|RNA binding|RNA methyltransferase activity			breast(1)	1						CCCGCCCTTGTACTTGCCGAG	0.592			NA											11	51					0	0	0.000978	0	0
DLEC1	9940	broad.mit.edu	37	3	38104070	38104070	+	Splice_Site	SNP	A	A	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr3:38104070A>G	uc003cho.1	+	5	895	c.874_splice	c.e5-2	p.K292_splice	DLEC1_uc003chp.1_Splice_Site_p.K292_splice|DLEC1_uc010hgv.1_Splice_Site_p.K292_splice|DLEC1_uc010hgw.1_5'Flank|DLEC1_uc003chq.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform						negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		TATGTTTCAAAGAAAGCAAGT	0.448			NA											9	30					0	0	0.004482	0	0
PHLDB2	90102	broad.mit.edu	37	3	111686558	111686558	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr3:111686558G>A	uc010hqa.2	+	15	3613	c.3202G>A	c.(3202-3204)GAA>AAA	p.E1068K	PHLDB2_uc003dyc.2_Missense_Mutation_p.E1052K|PHLDB2_uc003dyd.2_Missense_Mutation_p.E1025K|PHLDB2_uc003dyg.2_Missense_Mutation_p.E1068K|PHLDB2_uc003dyh.2_Missense_Mutation_p.E1025K|PHLDB2_uc003dyi.2_Missense_Mutation_p.E559K|PHLDB2_uc003dyj.2_Missense_Mutation_p.E123K	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1068	Potential.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						ACGAGCCCTGGAAGAAGAAAA	0.373			NA									OREG0015707	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	15					0	0	0.000602	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519925	69519925	+	Silent	SNP	G	G	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr4:69519925G>T	uc011cal.1	-	5	1181	c.1143C>A	c.(1141-1143)ATC>ATA	p.I381I		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	381					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCGCCTCATAGATGCCATTGG	0.413			NA											8	127					1.58986e-06	3.51855e-06	0.008291	1	0
ABCG2	9429	broad.mit.edu	37	4	89020602	89020602	+	Splice_Site	SNP	T	T	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr4:89020602T>A	uc003hrg.2	-	12	1861	c.1368_splice	c.e12-1	p.I456_splice	ABCG2_uc003hrh.2_Splice_Site_p.I456_splice|ABCG2_uc003hrf.2_Splice_Site_p.I324_splice	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2						cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	TATTCATGTCTATAGAACAAA	0.383			NA											7	50					0	0	0.001984	0	0
CCDC127	133957	broad.mit.edu	37	5	205488	205488	+	Missense_Mutation	SNP	A	A	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr5:205488A>C	uc003jam.1	-	3	807	c.707T>G	c.(706-708)CTC>CGC	p.L236R		NM_145265	NP_660308	Q96BQ5	CC127_HUMAN	coiled-coil domain containing 127	236											0			all cancers(22;0.0236)|Lung(60;0.113)			TTTGAGATAGAGCCACATGAG	0.438			NA											4	108					0	0	0.000602	0	0
BTN1A1	696	broad.mit.edu	37	6	26509081	26509081	+	Silent	SNP	C	C	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr6:26509081C>A	uc003nif.3	+	7	1280	c.1260C>A	c.(1258-1260)CGC>CGA	p.R420R		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	420	B30.2/SPRY.|Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GGCCCCCACGCCGGGTTGGGA	0.502			NA											13	47					0.00010058	0.000208897	0.001368	1	0
CD109	135228	broad.mit.edu	37	6	74521963	74521963	+	Silent	SNP	C	C	G	rs144445787		TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr6:74521963C>G	uc003php.2	+	29	4163	c.3738C>G	c.(3736-3738)TCC>TCG	p.S1246S	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Silent_p.S1229S|CD109_uc010kba.2_Silent_p.S1169S	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1246						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TTAATATTTCCGCAAATGGTT	0.318			NA											5	53					0	0	0.001168	0	0
LAMA2	3908	broad.mit.edu	37	6	129470208	129470208	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr6:129470208G>C	uc003qbn.2	+	7	1099	c.994G>C	c.(994-996)GCT>CCT	p.A332P	LAMA2_uc003qbo.2_Missense_Mutation_p.A332P	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	332	Laminin EGF-like 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ACCCTGGAGAGCTGGAACTTT	0.403			NA											3	54					0	0	0.004672	0	0
GLI3	2737	broad.mit.edu	37	7	42005257	42005257	+	Silent	SNP	G	G	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr7:42005257G>A	uc011kbh.1	-	15	3505	c.3414C>T	c.(3412-3414)CAC>CAT	p.H1138H	GLI3_uc011kbg.1_Silent_p.H1079H	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1138					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GCTGGCCAGCGTGGCTGTCTG	0.677			NA							Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				10	121					0	0	0.006214	0	0
PCLO	27445	broad.mit.edu	37	7	82764796	82764796	+	Silent	SNP	T	T	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr7:82764796T>C	uc003uhx.2	-	3	2359	c.2070A>G	c.(2068-2070)CCA>CCG	p.P690P	PCLO_uc003uhv.2_Silent_p.P690P	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	636	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATCCTGTTTTGGTGCAGCAT	0.537			NA											11	36					0	0	0.000978	0	0
RINT1	60561	broad.mit.edu	37	7	105195643	105195643	+	Nonsense_Mutation	SNP	C	C	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr7:105195643C>G	uc003vda.1	+	11	1871	c.1640C>G	c.(1639-1641)TCA>TGA	p.S547*	RINT1_uc010ljj.1_Nonsense_Mutation_p.S122*	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	547	RINT1/TIP20.				cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						AACTACATCTCAACAGTACTA	0.323			NA											4	67					0	0	0.000248	0	0
TRPV5	56302	broad.mit.edu	37	7	142625303	142625303	+	Silent	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr7:142625303C>T	uc003wby.1	-	7	1053	c.789G>A	c.(787-789)CGG>CGA	p.R263R	TRPV5_uc003wbz.2_Silent_p.R263R	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	263	ANK 5.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GGATGTGCCTCCGCTTCTGCA	0.572			NA											17	90					0	0	0.008871	0	0
LRRC6	23639	broad.mit.edu	37	8	133645019	133645019	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr8:133645019T>C	uc003ytk.2	-	5	694	c.620A>G	c.(619-621)GAT>GGT	p.D207G	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	207						cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CCAACGTCCATCAAAGCCTGC	0.373			NA											15	121					0	0	0.004007	0	0
PLEC	5339	broad.mit.edu	37	8	145006974	145006974	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr8:145006974G>A	uc003zaf.1	-	14	2305	c.2135C>T	c.(2134-2136)GCA>GTA	p.A712V	PLEC_uc003zab.1_Missense_Mutation_p.A575V|PLEC_uc003zac.1_Missense_Mutation_p.A579V|PLEC_uc003zad.2_Missense_Mutation_p.A575V|PLEC_uc003zae.1_Missense_Mutation_p.A543V|PLEC_uc003zag.1_Missense_Mutation_p.A553V|PLEC_uc003zah.2_Missense_Mutation_p.A561V|PLEC_uc003zaj.2_Missense_Mutation_p.A602V	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	712	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GTCACTCCGTGCCCGCTCGAT	0.692			NA											6	15					0	0	0.001168	0	0
LINGO2	158038	broad.mit.edu	37	9	27949218	27949218	+	Silent	SNP	G	G	T	rs150860330		TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr9:27949218G>T	uc003zqu.1	-	2	1646	c.1452C>A	c.(1450-1452)ATC>ATA	p.I484I	LINGO2_uc010mjf.1_Silent_p.I484I|LINGO2_uc003zqv.1_Silent_p.I484I	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	484	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		CATTGCTAGCGATGCAAACAT	0.493			NA											6	37					3.59834e-05	7.59024e-05	0.001168	1	0
TMC1	117531	broad.mit.edu	37	9	75387391	75387391	+	Nonsense_Mutation	SNP	G	G	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr9:75387391G>A	uc004aiz.1	+	13	1344	c.804G>A	c.(802-804)TGG>TGA	p.W268*	TMC1_uc010moz.1_Nonsense_Mutation_p.W226*|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Nonsense_Mutation_p.W122*|TMC1_uc010mpa.1_Nonsense_Mutation_p.W122*	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	268	Extracellular (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						CAATTGGATGGATGAATTTCA	0.398	Pancreas(75;173 1345 14232 34245 43413)		NA											7	144					0	0	0.001984	0	0
KIAA1529	57653	broad.mit.edu	37	9	100105801	100105801	+	Silent	SNP	A	A	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr9:100105801A>G	uc011lut.1	+	31	3776	c.3003A>G	c.(3001-3003)GAA>GAG	p.E1001E	KIAA1529_uc004axe.1_Silent_p.E1001E|KIAA1529_uc004axg.1_Silent_p.E862E|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Silent_p.E186E|KIAA1529_uc004axf.2_Silent_p.E862E	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				AGTTCATAGAACAAGTGACAA	0.373			NA											8	28					0	0	0.006214	0	0
RC3H2	54542	broad.mit.edu	37	9	125613379	125613379	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr9:125613379C>G	uc010mwc.1	-	20	3602	c.3361G>C	c.(3361-3363)GGT>CGT	p.G1121R	uc004bnb.1_5'Flank|RC3H2_uc004bnc.2_RNA	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	1121						cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						TGGTCTTCACCTAAACTCTGT	0.383			NA											23	150					0	0	0.00333	0	0
CLCN5	1184	broad.mit.edu	37	X	49853490	49853490	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chrX:49853490G>C	uc004dos.1	+	9	1731	c.1483G>C	c.(1483-1485)GAT>CAT	p.D495H	CLCN5_uc004dor.1_Missense_Mutation_p.D565H|CLCN5_uc004doq.1_Missense_Mutation_p.D565H|CLCN5_uc004dot.1_Missense_Mutation_p.D495H	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	495					excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					TCAGGGAGCTGATTGCATCAC	0.493			NA											9	74					0	0	0.008291	0	0
FAM120C	54954	broad.mit.edu	37	X	54107840	54107840	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chrX:54107840C>A	uc004dsz.3	-	14	2976	c.2893G>T	c.(2893-2895)GTG>TTG	p.V965L	FAM120C_uc011moh.1_Missense_Mutation_p.L827F	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	965										ovary(1)|central_nervous_system(1)	2						CACTGGCCCACAACCATCCCA	0.502			NA											12	30					0.00136819	0.00271627	0.001368	1	0
ZNF711	7552	broad.mit.edu	37	X	84510318	84510318	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chrX:84510318G>C	uc004eeo.2	+	4	480	c.133G>C	c.(133-135)GTT>CTT	p.V45L	ZNF711_uc004eep.2_Missense_Mutation_p.V45L|ZNF711_uc004eeq.2_Missense_Mutation_p.V45L	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	45					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TGTTGTTTCAGTTCCTGAAGC	0.378			NA											12	27					0	0	0.001855	0	0
GPRASP2	114928	broad.mit.edu	37	X	101970715	101970715	+	Silent	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chrX:101970715C>T	uc004ejk.2	+	4	2252	c.918C>T	c.(916-918)CCC>CCT	p.P306P	GPRASP2_uc004ejl.2_Silent_p.P306P|GPRASP2_uc004ejm.2_Silent_p.P306P|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	306						cytoplasm	protein binding			ovary(1)	1						TGTTCAGGCCCAGAGTCAGGG	0.463			NA											24	61					0	0	0.00278	0	0
XPNPEP2	7512	broad.mit.edu	37	X	128902344	128902344	+	Silent	SNP	G	G	A	rs142832297	byFrequency	TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chrX:128902344G>A	uc004eut.1	+	21	2152	c.1908G>A	c.(1906-1908)GAG>GAA	p.E636E		NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	636					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						AGCTACTAGAGGAGTTCGAGT	0.617			NA											7	30					0	0	0.006214	0	0
L1CAM	3897	broad.mit.edu	37	X	153134106	153134106	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chrX:153134106C>T	uc004fjb.2	-	12	1564	c.1456G>A	c.(1456-1458)GAC>AAC	p.D486N	L1CAM_uc004fjc.2_Missense_Mutation_p.D486N|L1CAM_uc010nuo.2_Missense_Mutation_p.D481N|L1CAM_uc004fjd.1_Missense_Mutation_p.D300N	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	486	Extracellular (Potential).|Ig-like C2-type 5.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCCTGGAGGTCTCGAATGCCC	0.572			NA											9	33					0	0	0.004482	0	0
STK11	6794	broad.mit.edu	37	19	1207065	1207065	+	Frame_Shift_Del	DEL	G	G	-			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr19:1207065delG	uc002lrl.1	+	1	1268	c.153delG	c.(151-153)ATGfs	p.M51fs		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11	51	Protein kinase.				anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.?(3)|p.D53fs*11(1)|p.L50_D53del(1)|p.M51fs*14(1)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTACCTGATGGGGGACCTGC	0.607			14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			7	40	---	---	---	---	NA	NA	NA	NA	NA
LMTK3	114783	broad.mit.edu	37	19	49001784	49001784	+	Frame_Shift_Del	DEL	G	G	-			TCGA-78-7160-01A-11D-2036-08	TCGA-78-7160-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	b484b2dd-a2e1-430c-bbb4-61ac5db5d1e9	37732c62-0d8b-4ba4-a832-55cd5d0f6d49	g.chr19:49001784delG	uc002pjk.2	-	12	2629	c.2629delC	c.(2629-2631)CGGfs	p.R877fs		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		GGCTTCTCCCGGGGCCCCGGG	0.716			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
