Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF9	3604	broad.mit.edu	37	1	7993221	7993221	+	Splice_Site	SNP	C	C	G	rs139075597		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:7993221C>G	uc001aot.2	-	7	807	c.679_splice	c.e7+1	p.P227_splice		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,						induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		GTTAATCTTACGTTGTTTGAA	0.368			NA											3	34					0	0	0.004672	0	0
MTOR	2475	broad.mit.edu	37	1	11297961	11297961	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:11297961C>T	uc001asd.2	-	13	2268	c.2147G>A	c.(2146-2148)GGC>GAC	p.G716D		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	716					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						ACTGAGTCGGCCCACAGTGCA	0.572			NA											4	73					0	0	0.009096	0	0
UBR4	23352	broad.mit.edu	37	1	19482030	19482030	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:19482030A>C	uc001bbi.2	-	43	6209	c.6205T>G	c.(6205-6207)TAC>GAC	p.Y2069D	UBR4_uc001bbl.1_Missense_Mutation_p.Y6D|UBR4_uc001bbm.1_Missense_Mutation_p.Y1280D	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2069					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GTATAGATGTACCCAGCCGAA	0.433			NA											8	81					0	0	0.006214	0	0
CELA3A	10136	broad.mit.edu	37	1	22333950	22333950	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:22333950G>T	uc001bfl.2	+	6	603	c.584G>T	c.(583-585)GGT>GTT	p.G195V		NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	195	Peptidase S1.				cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						AACTGGTGGGGTTCCACCGTG	0.597			NA											15	45					8.60227e-14	1.15759e-13	0.004007	1	0
NIPAL3	57185	broad.mit.edu	37	1	24786969	24786969	+	Splice_Site	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:24786969A>G	uc001bjh.2	+	10	1270	c.863_splice	c.e10-2	p.G288_splice	NIPAL3_uc001bjg.2_Splice_Site_p.G288_splice|NIPAL3_uc009vrc.2_Splice_Site_p.G206_splice|NIPAL3_uc001bji.2_Splice_Site_p.R96_splice	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3							integral to membrane					0						TTGCTGCTGCAGGTGCAATAT	0.473			NA											8	50					0	0	0.004482	0	0
SYF2	25949	broad.mit.edu	37	1	25555610	25555610	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:25555610T>G	uc001bjt.1	-	3	192	c.137A>C	c.(136-138)GAA>GCA	p.E46A	SYF2_uc001bju.1_Intron|SYF2_uc010oeo.1_Missense_Mutation_p.E46A	NM_015484	NP_056299	O95926	SYF2_HUMAN	SYF2 homolog, RNA splicing factor isoform 1	46						catalytic step 2 spliceosome					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-26)|Colorectal(126;2.54e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000455)|STAD - Stomach adenocarcinoma(196;0.000766)|KIRC - Kidney renal clear cell carcinoma(1967;0.00145)|GBM - Glioblastoma multiforme(114;0.00443)|READ - Rectum adenocarcinoma(331;0.0936)|Lung(427;0.201)		TTTACGAGCTTCATTCTAAAA	0.383			NA											29	68					0	0	0.005443	0	0
IFI6	2537	broad.mit.edu	37	1	27994737	27994737	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:27994737C>G	uc001boo.1	-	4	421	c.298G>C	c.(298-300)GGG>CGG	p.G100R	IFI6_uc001bon.1_Missense_Mutation_p.G108R|IFI6_uc001bop.1_Missense_Mutation_p.G104R	NM_002038	NP_002029	P09912	IFI6_HUMAN	interferon, alpha-inducible protein 6 isoform a	100					anti-apoptosis|negative regulation of caspase activity|negative regulation of mitochondrial depolarization|release of cytochrome c from mitochondria|type I interferon-mediated signaling pathway	integral to membrane|mitochondrion	protein binding			ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;7.75e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CCGCACTCACCGAGGCTCTGC	0.493			NA											3	2					0	0	0.009096	0	0
PTPRU	10076	broad.mit.edu	37	1	29587414	29587414	+	Silent	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:29587414A>C	uc001bru.2	+	7	1253	c.1143A>C	c.(1141-1143)GCA>GCC	p.A381A	PTPRU_uc001brv.2_Silent_p.A381A|PTPRU_uc001brw.2_Silent_p.A381A|PTPRU_uc009vtq.2_Silent_p.A381A|PTPRU_uc009vtr.2_Silent_p.A381A	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	381	Extracellular (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CCAAATGCGCAGGTGGGTGCA	0.652			NA											11	20					0	0	0.000978	0	0
PUM1	9698	broad.mit.edu	37	1	31532281	31532281	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:31532281G>C	uc001bsi.1	-	2	246	c.133C>G	c.(133-135)CAA>GAA	p.Q45E	PUM1_uc001bsh.1_Missense_Mutation_p.Q45E|PUM1_uc001bsj.1_Missense_Mutation_p.Q45E|PUM1_uc010oga.1_Missense_Mutation_p.Q45E|PUM1_uc001bsk.1_Missense_Mutation_p.Q81E|PUM1_uc010ogb.1_Missense_Mutation_p.Q81E	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	45					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		GGCTGCGCTTGCGACCCTGTT	0.552			NA											6	92					0	0	0.001168	0	0
ZNF362	149076	broad.mit.edu	37	1	33760575	33760575	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:33760575C>T	uc001bxc.1	+	7	1116	c.946C>T	c.(946-948)CCT>TCT	p.P316S		NM_152493	NP_689706	Q5T0B9	ZN362_HUMAN	zinc finger protein 362	316	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GTGCCCACATCCTGGCTGCGA	0.622	Pancreas(162;1431 2676 35353 38425)		NA									OREG0013342	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	28					0	0	0.008291	0	0
CSMD2	114784	broad.mit.edu	37	1	34090212	34090212	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:34090212C>T	uc001bxn.1	-	35	5441	c.5412G>A	c.(5410-5412)AGG>AGA	p.R1804R	CSMD2_uc001bxm.1_Silent_p.R1844R|CSMD2_uc001bxo.1_Silent_p.R717R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1804	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGATGGTGCCCCTGCGCTCTG	0.642			NA											5	65					0	0	0.000602	0	0
GRIK3	2899	broad.mit.edu	37	1	37356572	37356572	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:37356572A>T	uc001caz.2	-	2	376	c.241T>A	c.(241-243)TAT>AAT	p.Y81N	GRIK3_uc001cba.1_Missense_Mutation_p.Y81N	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	81	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	TGTATGTCATAGGTCAAGGTT	0.542			NA											36	178					0	0	0.003755	0	0
CTPS	1503	broad.mit.edu	37	1	41474345	41474345	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:41474345G>A	uc001cgk.3	+	15	1916	c.1408G>A	c.(1408-1410)GAC>AAC	p.D470N	CTPS_uc010ojo.1_Missense_Mutation_p.D239N|CTPS_uc001cgl.3_Missense_Mutation_p.D470N|CTPS_uc010ojq.1_Missense_Mutation_p.D314N|CTPS_uc009vwe.2_Intron	NM_001905	NP_001896	P17812	PYRG1_HUMAN	CTP synthase	470	Glutamine amidotransferase type-1.				CTP biosynthetic process|glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|response to drug	cytosol	ATP binding|CTP synthase activity|protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)			L-Glutamine(DB00130)	ACTCTATGGAGACGCAGACTA	0.473			NA											8	116					0	0	0.004482	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45506070	45506070	+	Nonsense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:45506070T>A	uc001cnd.2	-	7	1978	c.1750A>T	c.(1750-1752)AAG>TAG	p.K584*		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	584							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					ATACCTTTCTTCTGATGCTTG	0.433			NA											13	113					0	0	0.00245	0	0
STIL	6491	broad.mit.edu	37	1	47746387	47746387	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:47746387T>A	uc001crc.1	-	12	1898	c.1743A>T	c.(1741-1743)TCA>TCT	p.S581S	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Silent_p.S534S|STIL_uc010omo.1_Silent_p.S581S|STIL_uc001crd.1_Silent_p.S581S|STIL_uc001cre.1_Silent_p.S581S|STIL_uc001crf.1_Silent_p.S194S|STIL_uc001crg.1_Silent_p.S534S	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	581					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				TTGGTCTTCCTGAATTATGGG	0.438			NA											37	105					0	0	0.003755	0	0
DAB1	1600	broad.mit.edu	37	1	57480745	57480745	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:57480745G>T	uc001cys.1	-	14	1929	c.1255C>A	c.(1255-1257)CAG>AAG	p.Q419K	DAB1_uc001cyt.1_Missense_Mutation_p.Q417K|DAB1_uc001cyq.1_Missense_Mutation_p.Q417K|DAB1_uc001cyr.1_Missense_Mutation_p.Q333K|DAB1_uc009vzw.1_Missense_Mutation_p.Q401K|DAB1_uc009vzx.1_Missense_Mutation_p.Q419K	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	452					cell differentiation|nervous system development					skin(2)|ovary(1)	3						TGGGCCATCTGGAAATCCTTA	0.597			NA											9	51					3.09899e-07	3.65672e-07	0.004482	1	0
DAB1	1600	broad.mit.edu	37	1	57480986	57480986	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:57480986G>A	uc001cys.1	-	14	1688	c.1014C>T	c.(1012-1014)CCC>CCT	p.P338P	DAB1_uc001cyt.1_Silent_p.P336P|DAB1_uc001cyq.1_Silent_p.P336P|DAB1_uc001cyr.1_Silent_p.P252P|DAB1_uc009vzw.1_Silent_p.P320P|DAB1_uc009vzx.1_Silent_p.P338P	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	371					cell differentiation|nervous system development					skin(2)|ovary(1)	3						CCCATGCGATGGGCTGAGCCC	0.662			NA											23	81					0	0	0.00278	0	0
DAB1	1600	broad.mit.edu	37	1	57528586	57528586	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:57528586A>G	uc001cys.1	-	11	1368	c.694T>C	c.(694-696)TAT>CAT	p.Y232H	DAB1_uc001cyt.1_Missense_Mutation_p.Y232H|DAB1_uc001cyq.1_Missense_Mutation_p.Y197H|DAB1_uc001cyr.1_Missense_Mutation_p.Y113H|DAB1_uc009vzw.1_Missense_Mutation_p.Y197H|DAB1_uc009vzx.1_Missense_Mutation_p.Y232H	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	232					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GGCACATCATAAACACCTTCC	0.448			NA											16	40					0	0	0.003163	0	0
JAK1	3716	broad.mit.edu	37	1	65300289	65300289	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:65300289T>A	uc001dbu.1	-	25	3670	c.3421A>T	c.(3421-3423)AGC>TGC	p.S1141C	JAK1_uc009wam.1_Missense_Mutation_p.S1129C|JAK1_uc009wal.1_Missense_Mutation_p.S318C	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	1141	Protein kinase 2.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		TTCTGAAAGCTTGTCCGATTG	0.338			NA	Mis		ALL								17	55					0	0	0.008871	0	0
TCTEX1D1	200132	broad.mit.edu	37	1	67243129	67243129	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:67243129C>T	uc001dcv.2	+	5	663	c.532C>T	c.(532-534)CTT>TTT	p.L178F	TCTEX1D1_uc009wau.2_RNA|TCTEX1D1_uc009wav.2_RNA	NM_152665	NP_689878	Q8N7M0	TC1D1_HUMAN	Tctex1 domain containing 1	178											0						TGCAGTTTACCTTGAGTGATT	0.363			NA											17	76					0	0	0.00499	0	0
GNG12	55970	broad.mit.edu	37	1	68173367	68173367	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:68173367C>G	uc001dea.1	-	3	195	c.3G>C	c.(1-3)ATG>ATC	p.M1I		NM_018841	NP_061329	Q9UBI6	GBG12_HUMAN	G-protein gamma-12 subunit precursor	1					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0						TTTTGCTGGACATCTTCAATT	0.343			NA											22	194					0	0	0.002299	0	0
LRRC7	57554	broad.mit.edu	37	1	70291429	70291429	+	Splice_Site	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:70291429A>T	uc001dep.2	+	3	338	c.308_splice	c.e3-2	p.G103_splice	LRRC7_uc001deo.1_Splice_Site_p.G141_splice|LRRC7_uc009wbg.2_Splice_Site	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7							centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						TTCACATTTTAGGTGTACAAG	0.269			NA											3	41					0	0	0.004672	0	0
ELTD1	64123	broad.mit.edu	37	1	79404923	79404923	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:79404923G>T	uc001diq.3	-	4	502	c.346C>A	c.(346-348)CAT>AAT	p.H116N		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	116	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TTATCTAAATGGCAGTTTGCA	0.249			NA											14	35					2.61681e-11	3.35568e-11	0.00245	1	0
COL24A1	255631	broad.mit.edu	37	1	86200648	86200648	+	Splice_Site	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:86200648C>A	uc001dlj.2	-	59	4825	c.4783_splice	c.e59-1	p.L1595_splice	COL24A1_uc001dli.2_Splice_Site_p.L710_splice|COL24A1_uc010osd.1_Splice_Site_p.L895_splice|COL24A1_uc001dlk.2_Splice_Site|COL24A1_uc010ose.1_Splice_Site|COL24A1_uc010osf.1_Splice_Site	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor						cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CAAACTCCAACTAATGTCATA	0.418			NA											13	23					0.00136819	0.0014711	0.001368	1	0
VCAM1	7412	broad.mit.edu	37	1	101198042	101198042	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:101198042A>T	uc001dti.2	+	7	1714	c.1594A>T	c.(1594-1596)ATG>TTG	p.M532L	VCAM1_uc001dtj.2_Missense_Mutation_p.M440L|VCAM1_uc010ouj.1_Missense_Mutation_p.M470L	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	532	Ig-like C2-type 6.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	TTCTGTGAATATGACATGCTT	0.537			NA											17	67					0	0	0.006122	0	0
S1PR1	1901	broad.mit.edu	37	1	101704852	101704852	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:101704852G>T	uc001dud.2	+	2	826	c.312G>T	c.(310-312)TTG>TTT	p.L104F	S1PR1_uc009weg.2_Missense_Mutation_p.L104F	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	104	Helical; Name=2; (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						ACCTGCTCTTGTCTGGGGCCA	0.547			NA									OREG0013620	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	61					5.45024e-15	7.47266e-15	0.00333	1	0
GNAT2	2780	broad.mit.edu	37	1	110146652	110146652	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:110146652G>T	uc001dya.2	-	7	1008	c.795C>A	c.(793-795)GTC>GTA	p.V265V		NM_005272	NP_005263	P19087	GNAT2_HUMAN	guanine nucleotide binding protein, alpha	265					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	G-protein beta/gamma-subunit complex binding|G-protein coupled photoreceptor activity|G-protein-coupled receptor binding|GTP binding|GTPase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0422)|Colorectal(144;0.108)|Epithelial(280;0.125)|all cancers(265;0.129)|LUSC - Lung squamous cell carcinoma(189;0.227)		TGAGAAAGAGGACAATGGAAG	0.403			NA											11	58					2.27111e-07	2.68348e-07	0.001368	1	0
RBM15	64783	broad.mit.edu	37	1	110882839	110882839	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:110882839G>A	uc001dzl.1	+	1	895	c.812G>A	c.(811-813)AGT>AAT	p.S271N	RBM15_uc001dzm.1_Missense_Mutation_p.S271N|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	271					interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		CCATCAGCCAGTGTGGTCGGG	0.597			NA	T	MKL1	acute megakaryocytic leukemia								11	126					0	0	0.008291	0	0
RSBN1	54665	broad.mit.edu	37	1	114310857	114310857	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:114310857G>C	uc001edq.2	-	5	1849	c.1813C>G	c.(1813-1815)CAA>GAA	p.Q605E	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	605						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCACCAAATTGTACAGCTTTC	0.403			NA											6	75					0	0	0.001168	0	0
TBX15	6913	broad.mit.edu	37	1	119427738	119427739	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:119427738_119427739GG>TT	uc001ehl.1	-	8	1422_1423	c.1107_1108CC>AA	c.(1105-1110)TCCCAG>TCAAAG	p.Q370K	TBX15_uc009whj.1_Missense_Mutation_p.Q194K	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	476						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		TACTGAAACTGGGAAGTGGGAA	0.569			NA											22	33					0	0	0.004672	0	0
SEC22B	9554	broad.mit.edu	37	1	145109526	145109526	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:145109526A>G	uc001eml.1	+	5	328	c.188A>G	c.(187-189)TAC>TGC	p.Y63C	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	63	Longin.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						CTCACCAGCTACATTATTGAG	0.378			NA											9	400					0	0	0.004482	0	0
NBPF10	100132406	broad.mit.edu	37	1	145293563	145293563	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:145293563A>G	uc001end.3	+	1	193	c.158A>G	c.(157-159)AAC>AGC	p.N53S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.N53S|NOTCH2NL_uc010oyh.1_RNA|NBPF10_uc001emq.1_Missense_Mutation_p.N53S	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	53											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TTCCTGGCCAACCGACAGAAG	0.448			NA											28	533					0	0	0.00874	0	0
HFE2	148738	broad.mit.edu	37	1	145416654	145416654	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:145416654T>A	uc001eni.2	+	4	1324	c.999T>A	c.(997-999)AAT>AAA	p.N333K	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.N107K|HFE2_uc001enk.2_Missense_Mutation_p.N220K|HFE2_uc001enl.2_Missense_Mutation_p.N107K	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	333					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAGAGCGCAATCGTCGGGGAG	0.532			NA											33	42					0	0	0.004289	0	0
GJA8	2703	broad.mit.edu	37	1	147381031	147381031	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:147381031C>G	uc001epu.1	+	2	1012	c.949C>G	c.(949-951)CAA>GAA	p.Q317E		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	317	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCGGGGCTACCAAGAGACACT	0.627	Melanoma(76;1255 1795 8195 52096)		NA											6	34					0	0	0.001168	0	0
FCGR1A	2209	broad.mit.edu	37	1	149761697	149761697	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:149761697T>G	uc001esp.3	+	5	697	c.647T>G	c.(646-648)TTG>TGG	p.L216W	HIST2H2BF_uc010pbj.1_Intron|FCGR1A_uc009wlg.2_Intron	NM_000566	NP_000557	P12314	FCGR1_HUMAN	Fc fragment of IgG, high affinity Ia, receptor	216	Extracellular (Potential).|Ig-like C2-type 3.				interferon-gamma-mediated signaling pathway|phagocytosis, engulfment	integral to membrane|plasma membrane	IgG binding|receptor activity|receptor signaling protein activity			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)				Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Methyl aminolevulinate(DB00992)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Porfimer(DB00707)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GAAACAAAGTTGCTCTTGCAG	0.498			NA											8	54					0	0	0.000978	0	0
SEMA6C	10500	broad.mit.edu	37	1	151115074	151115074	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:151115074C>G	uc001ewu.2	-	3	324	c.24G>C	c.(22-24)ATG>ATC	p.M8I	SEMA6C_uc001ewv.2_Missense_Mutation_p.M8I|SEMA6C_uc001eww.2_Missense_Mutation_p.M8I|SEMA6C_uc010pcq.1_Missense_Mutation_p.M8I|SEMA6C_uc009wml.1_Intron	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	8						integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCAGCAAGGGCATGAAGTGGG	0.637			NA											26	29					0	0	0.00333	0	0
RFX5	5993	broad.mit.edu	37	1	151314767	151314767	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:151314767C>T	uc001exv.1	-	11	1960	c.1746G>A	c.(1744-1746)AAG>AAA	p.K582K	RFX5_uc001exw.1_Silent_p.K582K|RFX5_uc009wmr.1_Silent_p.K582K|RFX5_uc010pcx.1_Silent_p.K542K	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	582						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CTACCTCTCCCTTTGCCAAAG	0.463			NA											31	177					0	0	0.002096	0	0
HRNR	388697	broad.mit.edu	37	1	152191355	152191355	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:152191355G>A	uc001ezt.1	-	3	2826	c.2750C>T	c.(2749-2751)TCC>TTC	p.S917F		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	917	10.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCACTGCTGGAAGACCGACC	0.627			NA											16	421					0	0	0.006122	0	0
FLG	2312	broad.mit.edu	37	1	152280798	152280798	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:152280798A>T	uc001ezu.1	-	3	6600	c.6564T>A	c.(6562-6564)AGT>AGA	p.S2188R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2188	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCTGCTTGCACTTCTGGATC	0.532			NA							Ichthyosis				111	620					0	0	0.00361	0	0
FLG2	388698	broad.mit.edu	37	1	152323313	152323313	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:152323313G>T	uc001ezw.3	-	3	7022	c.6949C>A	c.(6949-6951)CAG>AAG	p.Q2317K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2317							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAACCTGTCTGTGTGGATTGT	0.463			NA											61	342					7.50695e-29	1.15655e-28	0.00361	1	0
FLG2	388698	broad.mit.edu	37	1	152327330	152327330	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:152327330C>G	uc001ezw.3	-	3	3005	c.2932G>C	c.(2932-2934)GAG>CAG	p.E978Q	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	978	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGCCTGACTCATGTTGTCCA	0.493			NA											25	644					0	0	0.003954	0	0
LCE3B	353143	broad.mit.edu	37	1	152586301	152586301	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:152586301G>T	uc010pds.1	+	1	15	c.15G>T	c.(13-15)CAG>CAT	p.Q5H		NM_178433	NP_848520	Q5TA77	LCE3B_HUMAN	late cornified envelope 3B	5	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0313)|Kidney(5;0.0367)		CCTGCCAGCAGAACCAGCAGC	0.557			NA											29	22					1.08312e-15	1.50395e-15	0.009535	1	0
KPRP	448834	broad.mit.edu	37	1	152732910	152732911	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:152732910_152732911CC>AA	uc001fal.1	+	2	904_905	c.846_847CC>AA	c.(844-849)TACCTG>TAAATG	p.282_283YL>*M		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	282_283	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCAGCAGCTACCTGCCACTAAG	0.599			NA											47	63					0	0	0.004672	0	0
IVL	3713	broad.mit.edu	37	1	152883610	152883610	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:152883610A>T	uc001fau.2	+	2	1383	c.1337A>T	c.(1336-1338)CAG>CTG	p.Q446L		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	446	39 X 10 AA approximate tandem repeats of [LP]-[EKG]-[LHVYQEK]-[PLSQE]-[EQDV]- [QHEKRGA]-Q-[EMVQLP]-[GKLE]-[QHVNLD].|30.				isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGGAGCAGCAGCAGGGGCAG	0.493			NA											6	6					0	0	0.001168	0	0
NES	10763	broad.mit.edu	37	1	156640299	156640299	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:156640299C>A	uc001fpq.2	-	4	3814	c.3681G>T	c.(3679-3681)CCG>CCT	p.P1227P		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1227	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTTCCAGGATCGGGGTGTACG	0.627			NA											85	94					2.84431e-33	4.45285e-33	0.00361	1	0
OR6K2	81448	broad.mit.edu	37	1	158669516	158669516	+	Silent	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:158669516A>T	uc001fsu.1	-	1	927	c.927T>A	c.(925-927)GCT>GCA	p.A309A		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AAAATATCTTAGCTTGACCTA	0.388			NA											7	51					0	0	0.001984	0	0
PYHIN1	149628	broad.mit.edu	37	1	158908969	158908969	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:158908969A>G	uc001ftb.2	+	4	756	c.511A>G	c.(511-513)ACA>GCA	p.T171A	PYHIN1_uc001fta.3_Missense_Mutation_p.T171A|PYHIN1_uc001ftc.2_Missense_Mutation_p.T162A|PYHIN1_uc001ftd.2_Missense_Mutation_p.T171A|PYHIN1_uc001fte.2_Missense_Mutation_p.T162A	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	171					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					CAGCACGTCCACAGCCATGGG	0.517			NA											48	68					0	0	0.00361	0	0
PYHIN1	149628	broad.mit.edu	37	1	158911812	158911812	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:158911812A>T	uc001ftb.2	+	5	870	c.625A>T	c.(625-627)ATT>TTT	p.I209F	PYHIN1_uc001ftc.2_Missense_Mutation_p.I200F|PYHIN1_uc001ftd.2_Missense_Mutation_p.I209F|PYHIN1_uc001fte.2_Missense_Mutation_p.I200F	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	209	HIN-200.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					CAGTAAAAATATTTTCCGAGA	0.363			NA											24	22					0	0	0.00278	0	0
ATP1A4	480	broad.mit.edu	37	1	160134024	160134024	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:160134024C>T	uc001fve.3	+	7	1336	c.857C>T	c.(856-858)GCG>GTG	p.A286V	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_5'Flank	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	286	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCAGGCCTGGCGGTTGGCCAG	0.557			NA											25	140					0	0	0.00333	0	0
SLAMF1	6504	broad.mit.edu	37	1	160616716	160616716	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:160616716A>T	uc001fwl.3	-	1	366	c.20T>A	c.(19-21)CTC>CAC	p.L7H	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA|SLAMF1_uc001fwm.2_Missense_Mutation_p.L7H	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	7					interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GGTCAAGGAGAGGAGCCCCTT	0.567			NA											4	39					0	0	0.000602	0	0
RXRG	6258	broad.mit.edu	37	1	165380320	165380321	+	Nonsense_Mutation	DNP	GG	GG	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:165380320_165380321GG>AT	uc001gda.2	-	5	948_949	c.648_649CC>AT	c.(646-651)AGCCGA>AGATGA	p.216_217SR>R*		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	216_217	Hinge.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	GCTCGCTCTCGGCTCCTCTGTC	0.446			NA											35	42					0	0	0.004672	0	0
FAM78B	149297	broad.mit.edu	37	1	166039591	166039591	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:166039591G>T	uc001gdr.2	-	3	1263	c.673C>A	c.(673-675)CGG>AGG	p.R225R	FAM78B_uc010plc.1_RNA|FAM78B_uc001gdq.2_RNA	NM_001017961	NP_001017961	Q5VT40	FA78B_HUMAN	hypothetical protein LOC149297	225										central_nervous_system(1)|skin(1)	2	all_hematologic(923;0.0813)|Acute lymphoblastic leukemia(8;0.155)					GGTTCCATCCGGCTCAGGATC	0.622			NA											20	75					8.00594e-06	9.17369e-06	0.007413	1	0
FAM78B	149297	broad.mit.edu	37	1	166039623	166039623	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:166039623C>T	uc001gdr.2	-	3	1231	c.641G>A	c.(640-642)AGG>AAG	p.R214K	FAM78B_uc010plc.1_RNA|FAM78B_uc001gdq.2_5'Flank	NM_001017961	NP_001017961	Q5VT40	FA78B_HUMAN	hypothetical protein LOC149297	214										central_nervous_system(1)|skin(1)	2	all_hematologic(923;0.0813)|Acute lymphoblastic leukemia(8;0.155)					CTGCTGAGTCCTGCCCACCAG	0.587			NA											18	75					0	0	0.00499	0	0
XCL2	6846	broad.mit.edu	37	1	168510285	168510285	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:168510285T>G	uc001gfn.3	-	3	283	c.250A>C	c.(250-252)ATG>CTG	p.M84L		NM_003175	NP_003166	Q9UBD3	XCL2_HUMAN	chemokine (C motif) ligand 2 precursor	84					blood circulation|chemotaxis|immune response|signal transduction	extracellular space	chemokine activity			ovary(1)	1	all_hematologic(923;0.215)					TTCCTGTCCATGCTCCTGACC	0.483			NA											6	63					0	0	0.001984	0	0
KLHL20	27252	broad.mit.edu	37	1	173726252	173726252	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:173726252G>A	uc001gjc.2	+	7	1284	c.1105G>A	c.(1105-1107)GCA>ACA	p.A369T	KLHL20_uc010pmr.1_Missense_Mutation_p.A180T|KLHL20_uc009wwf.2_Missense_Mutation_p.A351T	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	369	Kelch 2.				cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						TCTGTTATATGCAGTAGGAGG	0.393	GBM(159;862 2695 6559 23041)		NA											28	92					0	0	0.007291	0	0
TNN	63923	broad.mit.edu	37	1	175106085	175106085	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:175106085C>A	uc001gkl.1	+	17	3669	c.3556C>A	c.(3556-3558)CGG>AGG	p.R1186R		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1186	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CAGCAAGGAGCGGTATAAGCT	0.473			NA											16	59					8.60227e-14	1.15759e-13	0.004007	1	0
CACNA1E	777	broad.mit.edu	37	1	181745277	181745277	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:181745277A>T	uc001gow.2	+	38	5345	c.5180A>T	c.(5179-5181)GAG>GTG	p.E1727V	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1615V|CACNA1E_uc001gox.1_Missense_Mutation_p.E953V|CACNA1E_uc009wxt.2_Missense_Mutation_p.E953V	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1727	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GACAACTTTGAGTACCTGACT	0.567			NA											60	180					0	0	0.00361	0	0
ZNF648	127665	broad.mit.edu	37	1	182025654	182025654	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:182025654G>T	uc001goz.2	-	2	1700	c.1492C>A	c.(1492-1494)CAC>AAC	p.H498N		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	498	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCCCCGGAGTGGATCTGTTGG	0.637	NSCLC(71;908 1374 5429 20458 35642)		NA											3	20					6.4e-05	7.10182e-05	0.004672	1	0
ZNF648	127665	broad.mit.edu	37	1	182026579	182026579	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:182026579C>A	uc001goz.2	-	2	775	c.567G>T	c.(565-567)CTG>CTT	p.L189L		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	189					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGAAACACAACAGAGAAGAGT	0.612	NSCLC(71;908 1374 5429 20458 35642)		NA											4	28					0.00909568	0.00956747	0.009096	1	0
FAM129A	116496	broad.mit.edu	37	1	184764797	184764797	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:184764797C>A	uc001gra.2	-	14	2295	c.2101G>T	c.(2101-2103)GAA>TAA	p.E701*	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	701	Glu-rich.				negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GTGATGGGTTCTGGCTCTTCC	0.562			NA											18	58					1.67942e-08	2.04818e-08	0.006122	1	0
FAM5C	339479	broad.mit.edu	37	1	190067188	190067188	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:190067188G>T	uc001gse.1	-	8	2493	c.2261C>A	c.(2260-2262)CCA>CAA	p.P754Q	FAM5C_uc010pot.1_Missense_Mutation_p.P652Q	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	754						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CATTGTGTTTGGCAATTTGGC	0.408			NA											37	99					3.62531e-18	5.18241e-18	0.004289	1	0
RGS1	5996	broad.mit.edu	37	1	192547357	192547357	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:192547357C>A	uc001gsi.1	+	4	352	c.286C>A	c.(286-288)CAA>AAA	p.Q96K	RGS1_uc010pou.1_Missense_Mutation_p.Q96K	NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	96	RGS.				immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				TTTAGCTGGTCAAAATGTCTT	0.333			NA											28	143					3.90053e-15	5.37324e-15	0.002445	1	0
IPO9	55705	broad.mit.edu	37	1	201843470	201843470	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:201843470C>G	uc001gwz.2	+	21	2853	c.2803C>G	c.(2803-2805)CGC>GGC	p.R935G		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	935				R -> P (in Ref. 4; BAB55181).	protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						TAATGCCGCTCGCCAGGCCAC	0.507			NA											7	97					0	0	0.00308	0	0
LGR6	59352	broad.mit.edu	37	1	202245436	202245436	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:202245436G>T	uc001gxu.2	+	5	431	c.431G>T	c.(430-432)CGC>CTC	p.R144L	LGR6_uc001gxv.2_Missense_Mutation_p.R92L|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Intron|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	144	LRR 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TCCACCAGGCGCCTAGATGCC	0.617			NA											18	79					1.67942e-08	2.04818e-08	0.006122	1	0
UBE2T	29089	broad.mit.edu	37	1	202301011	202301011	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:202301011C>A	uc001gxx.3	-	7	682	c.546G>T	c.(544-546)AAG>AAT	p.K182N		NM_014176	NP_054895	Q9NPD8	UBE2T_HUMAN	ubiquitin-conjugating enzyme E2T	182					DNA repair|protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination	nucleoplasm	ATP binding|ubiquitin-protein ligase activity				0						GCTGACTGGCCTTCCTTTTCT	0.438			NA											44	155					4.18559e-23	6.27119e-23	0.00361	1	0
KLHL12	59349	broad.mit.edu	37	1	202887329	202887329	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:202887329C>A	uc001gyo.1	-	4	737	c.537G>T	c.(535-537)GTG>GTT	p.V179V	KLHL12_uc001gyn.1_Silent_p.V29V|KLHL12_uc010pqc.1_Silent_p.V217V|KLHL12_uc009xah.1_Silent_p.V179V	NM_021633	NP_067646	Q53G59	KLH12_HUMAN	kelch-like 12	179					Wnt receptor signaling pathway		protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			TTAGCTTTTCCACCTCTCCTT	0.413			NA											24	182					2.48779e-11	3.19493e-11	0.005443	1	0
SNRPE	6635	broad.mit.edu	37	1	203830805	203830805	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:203830805G>T	uc001hai.2	+	1	66	c.18G>T	c.(16-18)CAG>CAT	p.Q6H	SNRPE_uc010pqn.1_RNA	NM_003094	NP_003085	P62304	RUXE_HUMAN	small nuclear ribonucleoprotein polypeptide E	6					histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|RNA binding				0	all_cancers(21;0.103)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ACCGTGGCCAGGGTCAGAAAG	0.562	Ovarian(83;324 1318 17952 32395 39614)		NA											4	66					5.9392e-07	6.95165e-07	0.001168	1	0
SLC45A3	85414	broad.mit.edu	37	1	205628458	205628458	+	Silent	SNP	G	G	A	rs141291475	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:205628458G>A	uc001hda.1	-	5	1905	c.1566C>T	c.(1564-1566)GCC>GCT	p.A522A	SLC45A3_uc010prn.1_Intron|SLC45A3_uc010pro.1_Intron|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	522	Helical; Name=11; (Potential).				transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			ACACCATATAGGCAGTGACAG	0.547			NA	T	ETV1|ETV5|ELK4|ERG	prostate 						OREG0014161	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	68					0	0	0.000978	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209951496	209951496	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:209951496G>A	uc001hho.2	+	13	1520	c.1230G>A	c.(1228-1230)GTG>GTA	p.V410V	TRAF3IP3_uc001hhl.2_Silent_p.V390V|TRAF3IP3_uc001hhm.1_3'UTR|TRAF3IP3_uc001hhn.2_Silent_p.V390V|TRAF3IP3_uc009xcr.2_Silent_p.V410V	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	410	Cytoplasmic (Potential).|Potential.					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		TCACCCTGGTGACCAGAGTAC	0.468			NA											7	24					0	0	0.001984	0	0
PTPN14	5784	broad.mit.edu	37	1	214557623	214557623	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:214557623T>A	uc001hkk.1	-	13	1846	c.1575A>T	c.(1573-1575)CCA>CCT	p.P525P	PTPN14_uc010pty.1_Silent_p.P426P	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	525					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CCGGCTTGCTTGGTACCACAT	0.582	Colon(92;557 1424 24372 34121 40073)		NA											54	185					0	0	0.00361	0	0
KCTD3	51133	broad.mit.edu	37	1	215793486	215793486	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:215793486G>C	uc001hks.2	+	18	2268	c.1974G>C	c.(1972-1974)AGG>AGC	p.R658S	KCTD3_uc001hkt.2_Missense_Mutation_p.R656S|KCTD3_uc010pub.1_Missense_Mutation_p.R556S|KCTD3_uc009xdn.2_Missense_Mutation_p.R382S	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	658						voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		TATTAGCAAGGGCAAGAAGGA	0.433			NA											19	71					0	0	0.007413	0	0
USH2A	7399	broad.mit.edu	37	1	216497008	216497008	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:216497008G>T	uc001hku.1	-	8	1745	c.1358C>A	c.(1357-1359)ACA>AAA	p.T453K	USH2A_uc001hkv.2_Missense_Mutation_p.T453K	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	453	Laminin N-terminal.|Extracellular (Potential).		T -> I (found in a renal cell carcinoma sample; somatic mutation).		maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding	p.T453I(1)		ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GATGCTAAATGTGACATTGCC	0.363			NA								HNSCC(13;0.011)			25	94					1.55469e-16	2.1866e-16	0.00333	1	0
MARK1	4139	broad.mit.edu	37	1	220805550	220805550	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:220805550G>A	uc001hmn.3	+	11	1614	c.1017G>A	c.(1015-1017)ATG>ATA	p.M339I	MARK1_uc009xdw.2_Missense_Mutation_p.M339I|MARK1_uc010pun.1_Missense_Mutation_p.M339I|MARK1_uc001hmm.3_Missense_Mutation_p.M317I	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	339	UBA.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TAGACATTATGGTCACCATGG	0.308			NA											18	311					0	0	0.007413	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717255	222717255	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:222717255C>A	uc001hnh.1	-	2	656	c.598G>T	c.(598-600)GAT>TAT	p.D200Y		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	200					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CCCTGAGGATCTTGGGCCACC	0.612			NA											13	65					7.03913e-09	8.65743e-09	0.001368	1	0
NUP133	55746	broad.mit.edu	37	1	229594020	229594020	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:229594020C>A	uc001htn.2	-	21	2960	c.2868G>T	c.(2866-2868)TTG>TTT	p.L956F	uc001hto.1_5'Flank	NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	956					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				CCATATTTGCCAAACCCAGAA	0.388			NA											21	35					0.000295444	0.000322841	0.002299	1	0
ABCB10	23456	broad.mit.edu	37	1	229661863	229661864	+	Splice_Site	DNP	CC	CC	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:229661863_229661864CC>AA	uc001htp.3	-	10	1769	c.1726_splice	c.e10-1	p.E576_splice		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10							integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				AAAATGGGTTCCTACAAATTGG	0.361			NA											18	79					0	0	0.004672	0	0
AGT	183	broad.mit.edu	37	1	230846486	230846486	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:230846486G>A	uc001hty.3	-	2	619	c.111C>T	c.(109-111)TAC>TAT	p.Y37Y	AGT_uc009xfe.2_Silent_p.Y37Y|AGT_uc009xff.2_Silent_p.Y37Y	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	37					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	AGGGGTGTATGTACACCCGGT	0.622			NA											35	57					0	0	0.002445	0	0
LYST	1130	broad.mit.edu	37	1	235969542	235969542	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:235969542G>C	uc001hxj.2	-	6	3069	c.2894C>G	c.(2893-2895)TCT>TGT	p.S965C	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.S965C	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	965					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			ACGACACATAGACCAAATGTC	0.418			NA							Chediak-Higashsyndrome				67	106					0	0	0.00361	0	0
ACTN2	88	broad.mit.edu	37	1	236906299	236906299	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:236906299A>T	uc001hyf.2	+	11	1415	c.1211A>T	c.(1210-1212)GAG>GTG	p.E404V	ACTN2_uc001hyg.2_Missense_Mutation_p.E196V|ACTN2_uc009xgi.1_Missense_Mutation_p.E404V|ACTN2_uc010pxu.1_Missense_Mutation_p.E93V|ACTN2_uc001hyh.2_Missense_Mutation_p.E92V	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	404	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CACCTGGCTGAGAAGTTCAGG	0.527			NA											14	63					0	0	0.001855	0	0
ACTN2	88	broad.mit.edu	37	1	236906314	236906314	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:236906314A>G	uc001hyf.2	+	11	1430	c.1226A>G	c.(1225-1227)AAG>AGG	p.K409R	ACTN2_uc001hyg.2_Missense_Mutation_p.K201R|ACTN2_uc009xgi.1_Missense_Mutation_p.K409R|ACTN2_uc010pxu.1_Missense_Mutation_p.K98R|ACTN2_uc001hyh.2_Missense_Mutation_p.K97R	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	409	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TTCAGGCAGAAGGCCTCAACG	0.522			NA											19	63					0	0	0.010504	0	0
ACTN2	88	broad.mit.edu	37	1	236912547	236912547	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:236912547A>G	uc001hyf.2	+	14	1843	c.1639A>G	c.(1639-1641)AGC>GGC	p.S547G	ACTN2_uc001hyg.2_Missense_Mutation_p.S339G|ACTN2_uc009xgi.1_Missense_Mutation_p.S547G|ACTN2_uc010pxu.1_Missense_Mutation_p.S236G|ACTN2_uc001hyh.2_Missense_Mutation_p.S235G	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	547	Spectrin 3.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CATTGTCCACAGCATTGAGGA	0.443			NA											28	78					0	0	0.004656	0	0
NLRP3	114548	broad.mit.edu	37	1	247582216	247582216	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:247582216C>A	uc001icr.2	+	3	258	c.120C>A	c.(118-120)CCC>CCA	p.P40P	NLRP3_uc001ics.2_Silent_p.P40P|NLRP3_uc001icu.2_Silent_p.P40P|NLRP3_uc001icw.2_Silent_p.P40P|NLRP3_uc001icv.2_Silent_p.P40P|NLRP3_uc010pyw.1_Silent_p.P38P|NLRP3_uc001ict.1_Silent_p.P38P	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	40	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GCTGCATCCCCCTCCCGAGGG	0.567			NA											13	39					0.00185496	0.00199202	0.001855	1	0
NLRP3	114548	broad.mit.edu	37	1	247587692	247587692	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:247587692G>T	uc001icr.2	+	5	1085	c.947G>T	c.(946-948)GGA>GTA	p.G316V	NLRP3_uc001ics.2_Missense_Mutation_p.G316V|NLRP3_uc001icu.2_Missense_Mutation_p.G316V|NLRP3_uc001icw.2_Missense_Mutation_p.G316V|NLRP3_uc001icv.2_Missense_Mutation_p.G316V|NLRP3_uc010pyw.1_Missense_Mutation_p.G314V|NLRP3_uc001ict.1_Missense_Mutation_p.G314V	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	316	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GAGCACATAGGACCGCTCTGC	0.567			NA											18	79					2.94398e-08	3.57542e-08	0.007413	1	0
OR2B11	127623	broad.mit.edu	37	1	247614514	247614514	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:247614514T>A	uc010pyx.1	-	1	771	c.771A>T	c.(769-771)CTA>CTT	p.L257L		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AAATCGCAGGTAGGTAGAAGA	0.517			NA											29	148					0	0	0.00632	0	0
OR2B11	127623	broad.mit.edu	37	1	247614915	247614915	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:247614915G>C	uc010pyx.1	-	1	370	c.370C>G	c.(370-372)CTG>GTG	p.L124V		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	124	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TAGCGGTCCAGGGCCATGGCG	0.607			NA											17	70					0	0	0.004007	0	0
OR2G2	81470	broad.mit.edu	37	1	247751975	247751975	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:247751975A>T	uc010pyy.1	+	1	314	c.314A>T	c.(313-315)TAC>TTC	p.Y105F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTTCACCTTTACAACTCCCAT	0.542			NA											33	150					0	0	0.003271	0	0
OR2G3	81469	broad.mit.edu	37	1	247769494	247769494	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:247769494A>T	uc010pyz.1	+	1	607	c.607A>T	c.(607-609)AGT>TGT	p.S203C		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TTTTGTTGTTAGTGTTCTGTT	0.448			NA											28	99					0	0	0.00632	0	0
OR13G1	441933	broad.mit.edu	37	1	247835474	247835474	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:247835474C>G	uc001idi.1	-	1	870	c.870G>C	c.(868-870)CAG>CAC	p.Q290H		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCTCCCTATTCTGGAAGCTGT	0.448			NA											30	114					0	0	0.008361	0	0
OR11L1	391189	broad.mit.edu	37	1	248004727	248004727	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:248004727G>A	uc001idn.1	-	1	472	c.472C>T	c.(472-474)CTG>TTG	p.L158L		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGGGAAGGCAGAAAGCCTGTG	0.582			NA											4	113					0	0	0.009096	0	0
OR2L3	391192	broad.mit.edu	37	1	248224682	248224682	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:248224682G>T	uc001idx.1	+	1	699	c.699G>T	c.(697-699)AGG>AGT	p.R233S	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CAGAAGGGAGGAAGAAAGCCT	0.478			NA											55	236					6.30371e-39	9.95803e-39	0.00361	1	0
SFMBT2	57713	broad.mit.edu	37	10	7244452	7244452	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:7244452G>C	uc009xio.1	-	13	1568	c.1477C>G	c.(1477-1479)CCA>GCA	p.P493A	SFMBT2_uc001ijn.1_Missense_Mutation_p.P493A|SFMBT2_uc010qay.1_Intron	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	493					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TGTTTCTCTGGTTGCACGACT	0.398			NA											16	38					0	0	0.006122	0	0
ITIH5	80760	broad.mit.edu	37	10	7683889	7683889	+	Splice_Site	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:7683889C>T	uc001ijq.2	-	3	378	c.299_splice	c.e3+1	p.M100_splice	ITIH5_uc001ijr.1_Splice_Site_p.M100_splice	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain						hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						GTGTCACCTACATAGTGAAGT	0.488			NA											10	116					0	0	0.001368	0	0
CUBN	8029	broad.mit.edu	37	10	16980992	16980992	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:16980992T>C	uc001ioo.2	-	38	5755	c.5703A>G	c.(5701-5703)GAA>GAG	p.E1901E		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1901	CUB 13.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGTTTTGTATTTCTTCTATGT	0.358			NA											30	62					0	0	0.003271	0	0
SLC39A12	221074	broad.mit.edu	37	10	18270268	18270268	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:18270268G>T	uc001ipo.2	+	6	1225	c.952G>T	c.(952-954)GAG>TAG	p.E318*	SLC39A12_uc001ipn.2_Nonsense_Mutation_p.E318*|SLC39A12_uc001ipp.2_Nonsense_Mutation_p.E318*|SLC39A12_uc010qck.1_Nonsense_Mutation_p.E184*	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	318	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						GCAGCTGGTGGAGATATTTCT	0.453			NA											15	66					2.31682e-05	2.60344e-05	0.003163	1	0
GPR158	57512	broad.mit.edu	37	10	25886724	25886724	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:25886724C>A	uc001isj.2	+	11	2229	c.2169C>A	c.(2167-2169)GCC>GCA	p.A723A	GPR158_uc001isk.2_Silent_p.A98A	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	723	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AACTCTATGCCCAACTGGAAA	0.418			NA											38	84					2.05212e-20	3.00243e-20	0.005524	1	0
GAD2	2572	broad.mit.edu	37	10	26508011	26508011	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:26508011C>A	uc001isp.2	+	4	829	c.326C>A	c.(325-327)GCG>GAG	p.A109E	GAD2_uc009xkr.2_Missense_Mutation_p.A109E|GAD2_uc001isq.2_Missense_Mutation_p.A109E	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	109					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CCCACTTTGGCGTTTCTGCAA	0.363			NA											31	45					1.74807e-11	2.25825e-11	0.002096	1	0
GAD2	2572	broad.mit.edu	37	10	26575391	26575391	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:26575391G>C	uc001isp.2	+	13	1857	c.1354G>C	c.(1354-1356)GTT>CTT	p.V452L	GAD2_uc001isq.2_Missense_Mutation_p.V452L	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	452					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CCACGTTGATGTTTTTAAACT	0.438			NA											29	46					0	0	0.00632	0	0
ANKRD26	22852	broad.mit.edu	37	10	27306605	27306605	+	Silent	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:27306605A>G	uc001ith.2	-	30	4501	c.4329T>C	c.(4327-4329)TGT>TGC	p.C1443C	ANKRD26_uc001itg.2_Silent_p.C1130C|ANKRD26_uc009xku.1_Silent_p.C1444C	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1443	Potential.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						GTAGTTTTTCACATTTCTTTT	0.348			NA											5	89					0	0	0.000602	0	0
ZNF33A	7581	broad.mit.edu	37	10	38345105	38345105	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:38345105A>G	uc001izh.2	+	5	2228	c.2050A>G	c.(2050-2052)AGA>GGA	p.R684G	ZNF33A_uc001izg.2_Missense_Mutation_p.R685G|ZNF33A_uc010qev.1_Missense_Mutation_p.R691G|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	684	C2H2-type 13.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						TTTCCATGAGAGAAAGCACAC	0.398			NA											30	87					0	0	0.008361	0	0
HNRNPF	3185	broad.mit.edu	37	10	43882738	43882738	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:43882738G>T	uc009xmh.1	-	3	1082	c.595C>A	c.(595-597)CTG>ATG	p.L199M	HNRNPF_uc001jar.2_Missense_Mutation_p.L199M|HNRNPF_uc001jas.2_Missense_Mutation_p.L199M|HNRNPF_uc001jat.2_Missense_Mutation_p.L199M|HNRNPF_uc001jav.2_Missense_Mutation_p.L199M|HNRNPF_uc001jau.2_Missense_Mutation_p.L199M|uc010qfa.1_Missense_Mutation_p.Q140H	NM_001098208	NP_001091678	P52597	HNRPF_HUMAN	heterogeneous nuclear ribonucleoprotein F	199					regulation of RNA splicing	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding				0						ATGAACTTCAGAGGGGGATCT	0.562			NA											28	88					2.48779e-11	3.19493e-11	0.005443	1	0
RBP3	5949	broad.mit.edu	37	10	48389931	48389931	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:48389931G>T	uc001jez.2	-	1	1061	c.947C>A	c.(946-948)GCC>GAC	p.A316D		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	316	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GATGGCCAGGGCTTTCTCCAG	0.687			NA											10	38					0.000978159	0.00105826	0.000978	1	0
OGDHL	55753	broad.mit.edu	37	10	50959877	50959877	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:50959877T>C	uc001jie.2	-	6	887	c.745A>G	c.(745-747)ATG>GTG	p.M249V	OGDHL_uc009xog.2_Missense_Mutation_p.M276V|OGDHL_uc010qgt.1_Missense_Mutation_p.M192V|OGDHL_uc010qgu.1_Missense_Mutation_p.M40V|OGDHL_uc009xoh.2_Missense_Mutation_p.M40V	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	249					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GCCAACCTCATGGAGCGCACT	0.627			NA											19	71					0	0	0.007413	0	0
PARG	8505	broad.mit.edu	37	10	51077590	51077590	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:51077590C>G	uc001jif.2	-	10	2261	c.2000G>C	c.(1999-2001)GGA>GCA	p.G667A	PARG_uc001jih.2_Missense_Mutation_p.G667A|PARG_uc001jig.2_Missense_Mutation_p.G253A|PARG_uc010qgv.1_Intron|PARG_uc009xoi.2_Intron|PARG_uc010qgw.1_Missense_Mutation_p.G558A|PARG_uc009xoj.2_Missense_Mutation_p.G218A|PARG_uc010qgx.1_Missense_Mutation_p.G585A	NM_003631	NP_003622	Q86W56	PARG_HUMAN	poly (ADP-ribose) glycohydrolase	667					carbohydrate metabolic process	nucleus	poly(ADP-ribose) glycohydrolase activity			ovary(2)	2				Epithelial(53;0.213)		TGATGAACGTCCCTCAAACAA	0.318			NA											4	8					0	0	0.001168	0	0
PCDH15	65217	broad.mit.edu	37	10	55582281	55582281	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:55582281G>T	uc001jju.1	-	33	5600	c.5205C>A	c.(5203-5205)GCC>GCA	p.A1735A	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.A1732A|PCDH15_uc010qhw.1_Silent_p.A1695A|PCDH15_uc010qhx.1_Silent_p.A1666A|PCDH15_uc010qhy.1_Silent_p.A1742A|PCDH15_uc010qhz.1_Silent_p.A1737A|PCDH15_uc010qia.1_Silent_p.A1715A|PCDH15_uc010qib.1_Silent_p.A1712A	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1735	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTGGTGGATGGGCAAAATTTT	0.249			NA								HNSCC(58;0.16)			3	17					0.004672	0.00497434	0.004672	1	0
PCDH15	65217	broad.mit.edu	37	10	55944963	55944963	+	Silent	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:55944963A>T	uc001jju.1	-	12	1766	c.1371T>A	c.(1369-1371)ACT>ACA	p.T457T	PCDH15_uc010qhq.1_Silent_p.T462T|PCDH15_uc010qhr.1_Silent_p.T457T|PCDH15_uc010qhs.1_Silent_p.T469T|PCDH15_uc010qht.1_Silent_p.T464T|PCDH15_uc010qhu.1_Silent_p.T457T|PCDH15_uc001jjv.1_Silent_p.T435T|PCDH15_uc010qhv.1_Silent_p.T457T|PCDH15_uc010qhw.1_Silent_p.T420T|PCDH15_uc010qhx.1_Silent_p.T457T|PCDH15_uc010qhy.1_Silent_p.T462T|PCDH15_uc010qhz.1_Silent_p.T457T|PCDH15_uc010qia.1_Silent_p.T435T|PCDH15_uc010qib.1_Silent_p.T435T|PCDH15_uc001jjw.2_Silent_p.T457T	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	457	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAGTAATACCAGTCTGTGTGA	0.393			NA								HNSCC(58;0.16)			27	50					0	0	0.002096	0	0
PCDH15	65217	broad.mit.edu	37	10	56106133	56106133	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:56106133C>A	uc001jju.1	-	6	981	c.586G>T	c.(586-588)GAT>TAT	p.D196Y	PCDH15_uc010qhq.1_Missense_Mutation_p.D201Y|PCDH15_uc010qhr.1_Missense_Mutation_p.D196Y|PCDH15_uc010qhs.1_Missense_Mutation_p.D201Y|PCDH15_uc010qht.1_Missense_Mutation_p.D196Y|PCDH15_uc010qhu.1_Missense_Mutation_p.D196Y|PCDH15_uc001jjv.1_Missense_Mutation_p.D174Y|PCDH15_uc010qhv.1_Missense_Mutation_p.D196Y|PCDH15_uc010qhw.1_Missense_Mutation_p.D196Y|PCDH15_uc010qhx.1_Missense_Mutation_p.D196Y|PCDH15_uc010qhy.1_Missense_Mutation_p.D201Y|PCDH15_uc010qhz.1_Missense_Mutation_p.D196Y|PCDH15_uc010qia.1_Missense_Mutation_p.D174Y|PCDH15_uc010qib.1_Missense_Mutation_p.D174Y|PCDH15_uc001jjw.2_Missense_Mutation_p.D196Y	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	196	Extracellular (Potential).|Cadherin 2.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACCGGATCATCTGGATTATAC	0.308			NA								HNSCC(58;0.16)			24	93					1.22574e-08	1.50541e-08	0.002299	1	0
BICC1	80114	broad.mit.edu	37	10	60548170	60548170	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:60548170G>A	uc001jki.1	+	6	587	c.587G>A	c.(586-588)CGA>CAA	p.R196Q		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	196	KH 1.				multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						GAATCTGCCCGAGTTAGAATT	0.303			NA											16	30					0	0	0.006122	0	0
PBLD	64081	broad.mit.edu	37	10	70056647	70056647	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:70056647T>A	uc001jns.1	-	3	383	c.180A>T	c.(178-180)GCA>GCT	p.A60A	PBLD_uc001jnr.1_Silent_p.A27A|PBLD_uc001jnt.1_Silent_p.A60A|PBLD_uc001jnu.1_Silent_p.A60A|PBLD_uc001jnv.1_Silent_p.A60A	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	60					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						ATTTACTTTGTGCAAAGTTGT	0.229			NA											16	75					0	0	0.003163	0	0
HK1	3098	broad.mit.edu	37	10	71103616	71103616	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:71103616G>T	uc001jpl.3	+	2	198	c.97G>T	c.(97-99)GAT>TAT	p.D33Y	HK1_uc009xqc.1_Silent_p.P96P|HK1_uc001jpg.3_Missense_Mutation_p.D21Y|HK1_uc001jph.3_Missense_Mutation_p.D37Y|HK1_uc001jpi.3_Missense_Mutation_p.D37Y|HK1_uc001jpj.3_Missense_Mutation_p.D68Y|HK1_uc001jpk.3_Missense_Mutation_p.D32Y|HK1_uc009xqd.2_5'UTR	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	33	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						GCGGCTCTCCGATGAAACTCT	0.522			NA											40	118					2.26627e-22	3.36087e-22	0.007835	1	0
CDH23	64072	broad.mit.edu	37	10	73455252	73455252	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:73455252G>T	uc001jrx.3	+	21	2744	c.2367G>T	c.(2365-2367)GAG>GAT	p.E789D	CDH23_uc001jry.2_Missense_Mutation_p.E405D|CDH23_uc001jrz.2_Missense_Mutation_p.E405D	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	789	Cadherin 8.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACCTGGTGGAGATGACCCCTC	0.597			NA											9	39					0.00829132	0.00878497	0.008291	1	0
SEC24C	9632	broad.mit.edu	37	10	75527670	75527670	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:75527670C>A	uc001juw.2	+	16	2265	c.2086C>A	c.(2086-2088)CTC>ATC	p.L696I	SEC24C_uc009xrj.1_Missense_Mutation_p.L554I|SEC24C_uc001jux.2_Missense_Mutation_p.L696I|SEC24C_uc010qko.1_Missense_Mutation_p.L577I|SEC24C_uc010qkp.1_Intron|SEC24C_uc010qkq.1_Intron	NM_004922	NP_004913	P53992	SC24C_HUMAN	SEC24-related protein C	696					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|zinc ion binding			skin(2)|central_nervous_system(1)	3	Prostate(51;0.0112)					CTGTGTAGATCTCTTTCTCTT	0.517			NA											6	69					2.0095e-06	2.32398e-06	0.001984	1	0
NDST2	8509	broad.mit.edu	37	10	75563708	75563708	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:75563708C>A	uc001jvk.2	-	10	2714	c.1910G>T	c.(1909-1911)AGC>ATC	p.S637I	NDST2_uc010qks.1_Missense_Mutation_p.S263I|NDST2_uc010qkt.1_Missense_Mutation_p.S514I|NDST2_uc001jvl.1_Missense_Mutation_p.S44I|NDST2_uc009xro.2_Missense_Mutation_p.S263I|NDST2_uc010qku.1_Missense_Mutation_p.S512I	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	637	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					CTCAAATGTGCTGGGGCTAGG	0.502			NA											32	97					2.08457e-15	2.88073e-15	0.002096	1	0
LRIT1	26103	broad.mit.edu	37	10	85993978	85993978	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:85993978C>A	uc001kcz.1	-	3	768	c.746G>T	c.(745-747)AGG>ATG	p.R249M		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	249	LRRCT.|Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						CTGGCACTTCCTCAGTTCAAG	0.607			NA											16	60					1.3612e-06	1.57842e-06	0.003163	1	0
RNLS	55328	broad.mit.edu	37	10	90341368	90341368	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:90341368G>A	uc001kfe.2	-	3	458	c.323C>T	c.(322-324)CCT>CTT	p.P108L	RNLS_uc010qms.1_Intron|RNLS_uc001kfd.2_Missense_Mutation_p.P108L	NM_001031709	NP_001026879	Q5VYX0	RNLS_HUMAN	renalase isoform 1	108						extracellular region	oxidoreductase activity			ovary(1)	1						AATTCCTTGAGGTGCCACAAA	0.353			NA											10	40					0	0	0.008291	0	0
BTAF1	9044	broad.mit.edu	37	10	93717010	93717010	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:93717010G>T	uc001khr.2	+	8	958	c.860G>T	c.(859-861)TGT>TTT	p.C287F	BTAF1_uc009xua.1_RNA|BTAF1_uc001khs.1_5'UTR	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	287					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GAAAGCTTTTGTGAAGAACTT	0.323			NA											14	55					1.05317e-09	1.32329e-09	0.00245	1	0
BTAF1	9044	broad.mit.edu	37	10	93784522	93784522	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:93784522G>T	uc001khr.2	+	35	4971	c.4873G>T	c.(4873-4875)GAC>TAC	p.D1625Y		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1625					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GTTGCTGTTGGACTGCGGTTT	0.428			NA											17	56					6.49762e-13	8.66349e-13	0.006122	1	0
KIF11	3832	broad.mit.edu	37	10	94388606	94388606	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:94388606T>A	uc001kic.2	+	11	1567	c.1259T>A	c.(1258-1260)GTA>GAA	p.V420E	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	420	Potential.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						GAGCAGATTGTAGAATTGATT	0.279	Colon(47;212 1003 2764 4062 8431)		NA											6	27					0	0	0.001168	0	0
CYP2C19	1557	broad.mit.edu	37	10	96609673	96609673	+	Splice_Site	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:96609673G>T	uc010qnz.1	+	8	1150	c.1150_splice	c.e8-1	p.G384_splice	CYP2C19_uc010qny.1_Splice_Site_p.G362_splice	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,						exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CTTGTTTCTAGGGCACAACCA	0.408			NA											21	103					1.42536e-11	1.84957e-11	0.004656	1	0
C10orf12	26148	broad.mit.edu	37	10	98743640	98743640	+	Silent	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:98743640A>G	uc001kmv.2	+	1	2600	c.2493A>G	c.(2491-2493)AAA>AAG	p.K831K		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	831										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		CAAGGAACAAATCAGATAAAC	0.433			NA											4	26					0	0	0.009096	0	0
DNMBP	23268	broad.mit.edu	37	10	101656083	101656083	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:101656083T>C	uc001kqj.2	-	10	3084	c.2992A>G	c.(2992-2994)ATC>GTC	p.I998V	DNMBP_uc010qpl.1_Intron|DNMBP_uc001kqg.2_Missense_Mutation_p.I286V|DNMBP_uc001kqh.2_Missense_Mutation_p.I630V	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	998					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GATTTCTTGATGATGGAGTGG	0.468			NA											7	40					0	0	0.00308	0	0
SORCS3	22986	broad.mit.edu	37	10	107005408	107005408	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:107005408G>T	uc001kyi.1	+	21	3204	c.2977G>T	c.(2977-2979)GAG>TAG	p.E993*	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	993	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GGACACAAAAGAGATTGCAGT	0.493	NSCLC(116;1497 1690 7108 13108 14106)		NA											14	47					4.3838e-07	5.15185e-07	0.001855	1	0
SORCS1	114815	broad.mit.edu	37	10	108923735	108923735	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:108923735T>C	uc001kym.2	-	1	558	c.550A>G	c.(550-552)AAC>GAC	p.N184D	SORCS1_uc001kyl.2_Missense_Mutation_p.N184D|SORCS1_uc009xxs.2_Missense_Mutation_p.N184D|SORCS1_uc001kyn.1_Missense_Mutation_p.N184D|SORCS1_uc001kyo.2_Missense_Mutation_p.N184D	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	184	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		ACGCTGCTGTTGTGGCCAGAC	0.557			NA											10	27					0	0	0.000978	0	0
GPR26	2849	broad.mit.edu	37	10	125426441	125426441	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:125426441C>T	uc001lhh.2	+	1	571	c.518C>T	c.(517-519)ACT>ATT	p.T173I		NM_153442	NP_703143	Q8NDV2	GPR26_HUMAN	G protein-coupled receptor 26	173	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1		Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)				GCCGTCTTCACTGGCGCCTTC	0.667			NA											4	13					0	0	0.000602	0	0
MKI67	4288	broad.mit.edu	37	10	129904199	129904199	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:129904199C>T	uc001lke.2	-	13	6100	c.5905G>A	c.(5905-5907)GAA>AAA	p.E1969K	MKI67_uc001lkf.2_Missense_Mutation_p.E1609K|MKI67_uc009yav.1_Missense_Mutation_p.E1544K|MKI67_uc009yaw.1_Missense_Mutation_p.E1119K	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1969	16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GTCATTGATTCCTCAGTGTGA	0.483			NA											75	250					0	0	0.00361	0	0
MKI67	4288	broad.mit.edu	37	10	129913427	129913427	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:129913427T>C	uc001lke.2	-	7	1440	c.1245A>G	c.(1243-1245)CCA>CCG	p.P415P	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	415					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AGAGATTTTCTGGCTTAGTGG	0.433			NA											25	61					0	0	0.00333	0	0
EBF3	253738	broad.mit.edu	37	10	131666158	131666158	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:131666158G>A	uc001lki.1	-	9	832	c.773C>T	c.(772-774)GCC>GTC	p.A258V		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	267	IPT/TIG.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GGGACTGATGGCCTTGATGCA	0.607			NA											12	31					0	0	0.001855	0	0
TCERG1L	256536	broad.mit.edu	37	10	133106583	133106583	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr10:133106583C>A	uc001lkp.2	-	3	647	c.561G>T	c.(559-561)GGG>GGT	p.G187G		NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	187										large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		GCTTTTCATGCCCATGGAAAA	0.493			NA											10	48					0.00829132	0.00878497	0.008291	1	0
B4GALNT4	338707	broad.mit.edu	37	11	376276	376276	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:376276A>T	uc001lpb.2	+	13	1231	c.1222A>T	c.(1222-1224)ATG>TTG	p.M408L		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	408	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ATACATGAAGATGGACAAGGA	0.672			NA											8	38					0	0	0.004482	0	0
MUC2	4583	broad.mit.edu	37	11	1075905	1075905	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:1075905G>C	uc001lsx.1	+	2	358	c.331G>C	c.(331-333)GTG>CTG	p.V111L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	111	VWFD 1.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCACCTGGCTGTGCTTAACGG	0.627			NA											2	6					0	0	0.004672	0	0
KRTAP5-6	440023	broad.mit.edu	37	11	1718521	1718521	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:1718521G>T	uc001lua.2	+	1	97	c.46G>T	c.(46-48)GGC>TGC	p.G16C		NM_001012416	NP_001012416	Q6L8G9	KRA56_HUMAN	keratin associated protein 5-6	16						keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CGGCTGTGGGGGCTGTGGCTC	0.652			NA											45	175					1.30916e-28	2.01339e-28	0.00361	1	0
TRIM21	6737	broad.mit.edu	37	11	4406605	4406605	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:4406605G>A	uc001lyy.1	-	7	1451	c.1338C>T	c.(1336-1338)TTC>TTT	p.F446F		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	446	B30.2/SPRY.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		AACCAGGACTGAAGAAGGGCC	0.488			NA											5	32					0	0	0.000602	0	0
OR52K2	119774	broad.mit.edu	37	11	4470615	4470615	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:4470615T>G	uc001lyz.1	+	1	46	c.46T>G	c.(46-48)TTG>GTG	p.L16V		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCCTTCTTGTTGGTGGGGAT	0.512			NA											11	100					0	0	0.001368	0	0
C11orf42	160298	broad.mit.edu	37	11	6231320	6231320	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:6231320C>A	uc001mcj.2	+	2	361	c.313C>A	c.(313-315)CGA>AGA	p.R105R		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	105										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCAAATGGCCGAGCAGAGAG	0.577			NA											23	66					1.85244e-09	2.31754e-09	0.00333	1	0
CCKBR	887	broad.mit.edu	37	11	6291926	6291926	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:6291926C>A	uc001mcp.2	+	4	897	c.704C>A	c.(703-705)GCC>GAC	p.A235D	CCKBR_uc001mcq.2_Missense_Mutation_p.A163D|CCKBR_uc001mcr.2_Missense_Mutation_p.A235D|CCKBR_uc001mcs.2_Missense_Mutation_p.A235D|CCKBR_uc001mct.1_5'Flank	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	235	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	GTGGTTATGGCCGTGGCCTAC	0.567			NA											55	83					2.5401e-28	3.89273e-28	0.00361	1	0
OR10A2	341276	broad.mit.edu	37	11	6891751	6891751	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:6891751G>A	uc001meu.1	+	1	766	c.766G>A	c.(766-768)GAG>AAG	p.E256K		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	256	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TAATTCACCTGAGGGCAAGAA	0.423			NA											65	150					0	0	0.00361	0	0
RBMXL2	27288	broad.mit.edu	37	11	7110638	7110638	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:7110638C>A	uc001mfc.2	+	1	474	c.287C>A	c.(286-288)CCG>CAG	p.P96Q		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	96	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CGGCGGGGCCCGCCGCCTCCC	0.612			NA											5	7					0.00116845	0.00125944	0.001168	1	0
IPO7	10527	broad.mit.edu	37	11	9455345	9455345	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:9455345C>T	uc001mho.2	+	18	2168	c.2026C>T	c.(2026-2028)CCC>TCC	p.P676S		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	676					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		GCAGCTACTACCCCTTGTATT	0.393			NA											10	80					0	0	0.008291	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18194989	18194989	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:18194989C>A	uc001mnv.1	+	1	606	c.186C>A	c.(184-186)TCC>TCA	p.S62S		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	62	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						ACGCTGTCTCCATCTACATCC	0.547			NA											24	91					8.24728e-16	1.15435e-15	0.004656	1	0
LDHC	3948	broad.mit.edu	37	11	18434318	18434318	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:18434318C>G	uc001mon.3	+	2	166	c.54C>G	c.(52-54)AAC>AAG	p.N18K	LDHC_uc001mom.3_Missense_Mutation_p.N18K|LDHC_uc009yhp.2_Missense_Mutation_p.N18K|LDHC_uc001moo.3_5'UTR|LDHC_uc009yhq.2_RNA|LDHC_uc009yhr.2_5'UTR	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	18					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	ATGATGAAAACTCCCAGTGTA	0.423			NA											30	41					0	0	0.007291	0	0
ANO5	203859	broad.mit.edu	37	11	22272548	22272548	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:22272548G>C	uc001mqi.2	+	12	1488	c.1171G>C	c.(1171-1173)GGA>CGA	p.G391R	ANO5_uc001mqj.2_Missense_Mutation_p.G390R	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	391	Helical; (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						AATATTCATGGGAATTTGGGG	0.303			NA											10	31					0	0	0.001368	0	0
KCNA4	3739	broad.mit.edu	37	11	30032523	30032523	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:30032523T>A	uc001msk.2	-	2	2855	c.1703A>T	c.(1702-1704)CAC>CTC	p.H568L		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	568						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGTCTCTCTGTGGTAGAAATA	0.468			NA											25	45					0	0	0.00278	0	0
CCDC73	493860	broad.mit.edu	37	11	32676475	32676475	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:32676475G>T	uc001mtv.2	-	10	733	c.689C>A	c.(688-690)ACA>AAA	p.T230K	CCDC73_uc001mtw.1_Missense_Mutation_p.T230K	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	230										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					ATATTGACATGTGACTTTGGA	0.289			NA											8	23					0.000157383	0.000173062	0.00308	1	0
PHF21A	51317	broad.mit.edu	37	11	45991437	45991437	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:45991437G>A	uc001ncc.3	-	8	1252	c.628C>T	c.(628-630)CCT>TCT	p.P210S	PHF21A_uc001ncb.3_Missense_Mutation_p.P211S|PHF21A_uc009ykx.2_Missense_Mutation_p.P211S|PHF21A_uc001nce.2_Missense_Mutation_p.P211S|PHF21A_uc001nca.1_5'UTR	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	210					blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						ATGGGCTGAGGAGGTGTTGCC	0.403			NA											10	10					0	0	0.001368	0	0
ARFGAP2	84364	broad.mit.edu	37	11	47198363	47198363	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:47198363A>C	uc001ndt.2	-	1	57	c.42T>G	c.(40-42)TTT>TTG	p.F14L	ARFGAP2_uc010rha.1_5'Flank|ARFGAP2_uc010rhb.1_Missense_Mutation_p.F14L|ARFGAP2_uc001ndu.2_Missense_Mutation_p.F14L|ARFGAP2_uc010rhc.1_5'UTR|ARFGAP2_uc010rhd.1_Missense_Mutation_p.F14L|ARFGAP2_uc001ndv.1_Missense_Mutation_p.F14L	NM_032389	NP_115765	Q8N6H7	ARFG2_HUMAN	ADP-ribosylation factor GTPase activating	14	Arf-GAP.				protein transport|regulation of ARF GTPase activity|vesicle-mediated transport	Golgi membrane|nucleolus|plasma membrane	ARF GTPase activator activity|zinc ion binding			ovary(1)	1						GAAGCCTCTTAAAAAGAGTCT	0.647			NA											17	34					0	0	0.004007	0	0
MADD	8567	broad.mit.edu	37	11	47330186	47330186	+	Silent	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:47330186A>T	uc001ner.1	+	25	3995	c.3804A>T	c.(3802-3804)GCA>GCT	p.A1268A	MADD_uc001neq.2_Silent_p.A1230A|MADD_uc001nev.1_Silent_p.A1187A|MADD_uc001nes.1_Silent_p.A1207A|MADD_uc001net.1_Silent_p.A1250A|MADD_uc009yln.1_Silent_p.A1183A|MADD_uc001neu.1_Silent_p.A1187A|MADD_uc001nex.2_Silent_p.A1268A|MADD_uc001nez.2_Silent_p.A1186A|MADD_uc001new.2_Silent_p.A1229A|MADD_uc009ylo.2_Silent_p.A182A	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1268					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		AGAAGCTGGCAGGCAGCCCCA	0.512			NA											14	71					0	0	0.003163	0	0
OR4B1	119765	broad.mit.edu	37	11	48238557	48238557	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:48238557T>C	uc010rhs.1	+	1	196	c.196T>C	c.(196-198)TTG>CTG	p.L66L		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CTGCCTGTCCTTGGTGGAGAT	0.483			NA											68	123					0	0	0.00361	0	0
OR4C46	119749	broad.mit.edu	37	11	51515322	51515322	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:51515322G>A	uc010ric.1	+	1	41	c.41G>A	c.(40-42)GGG>GAG	p.G14E		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTTTTGCTGGGGCTTACAGAG	0.333			NA											25	91					0	0	0.003954	0	0
OR4A15	81328	broad.mit.edu	37	11	55135885	55135885	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:55135885G>A	uc010rif.1	+	1	526	c.526G>A	c.(526-528)GCC>ACC	p.A176T		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	176	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCTGTTGGCGGCCTGGATTGG	0.438			NA											76	149					0	0	0.00361	0	0
OR4C15	81309	broad.mit.edu	37	11	55321892	55321892	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:55321892A>G	uc010rig.1	+	1	110	c.110A>G	c.(109-111)AAT>AGT	p.N37S		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	Error:Variant_position_missing_in_Q8NGM1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTTGTCCTAATTGCAGACTA	0.378			NA								HNSCC(20;0.049)			63	133					0	0	0.00361	0	0
OR5D18	219438	broad.mit.edu	37	11	55588013	55588013	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:55588013C>T	uc010rin.1	+	1	908	c.908C>T	c.(907-909)ACC>ATC	p.T303I		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				GATACAGTCACCGAGATACTG	0.398			NA											25	50					0	0	0.00333	0	0
OR8J3	81168	broad.mit.edu	37	11	55904398	55904398	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:55904398T>C	uc010riz.1	-	1	797	c.797A>G	c.(796-798)CAC>CGC	p.H266R		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					ATCCAGTGAGTGGTTGGTTTG	0.418			NA											20	95					0	0	0.001882	0	0
OR5T1	390155	broad.mit.edu	37	11	56043784	56043784	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:56043784C>A	uc001nio.1	+	1	670	c.670C>A	c.(670-672)CTG>ATG	p.L224M		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	224	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					AGTCACTATCCTGATTGTCCT	0.428			NA											53	207					4.25531e-23	6.35383e-23	0.00361	1	0
OR8J1	219477	broad.mit.edu	37	11	56127836	56127836	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:56127836C>G	uc010rjh.1	+	1	114	c.114C>G	c.(112-114)ACC>ACG	p.T38T		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ATGGGCTGACCATGGCAGGGA	0.493			NA											49	166					0	0	0.00361	0	0
OR5M8	219484	broad.mit.edu	37	11	56258013	56258013	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:56258013G>T	uc001nix.1	-	1	834	c.834C>A	c.(832-834)ACC>ACA	p.T278T		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					GGATTACTGTGGTATAAAATA	0.343			NA											13	79					4.3838e-07	5.15185e-07	0.001855	1	0
OR5B21	219968	broad.mit.edu	37	11	58275014	58275014	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:58275014C>A	uc010rki.1	-	1	565	c.565G>T	c.(565-567)GAC>TAC	p.D189Y		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				ATGCGTGTGTCAGAGCATGAG	0.463			NA											21	43					3.8784e-16	5.446e-16	0.001882	1	0
GLYAT	10249	broad.mit.edu	37	11	58480262	58480262	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:58480262A>T	uc001nnb.2	-	4	442	c.287T>A	c.(286-288)ATC>AAC	p.I96N	GLYAT_uc001nnc.2_Missense_Mutation_p.I96N	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	96					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	TTTCCAGTTGATGAGTTCTGG	0.398			NA											23	65					0	0	0.00278	0	0
OR4D11	219986	broad.mit.edu	37	11	59271729	59271729	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:59271729T>C	uc001noa.1	+	1	681	c.681T>C	c.(679-681)TCT>TCC	p.S227S		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CGCTGAGGTCTCAGGCAGGAG	0.527			NA											53	184					0	0	0.00361	0	0
OR4D9	390199	broad.mit.edu	37	11	59282749	59282749	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:59282749C>T	uc010rkv.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGCGTTTGACCGCTATATAGC	0.527			NA											5	101					0	0	0.000602	0	0
OR4D9	390199	broad.mit.edu	37	11	59283102	59283102	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:59283102C>A	uc010rkv.1	+	1	717	c.717C>A	c.(715-717)ACC>ACA	p.T239T		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCATCTCCACCTGCACCTCCC	0.537			NA											108	160					2.87887e-39	4.55603e-39	0.00361	1	0
MS4A3	932	broad.mit.edu	37	11	59828748	59828749	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:59828748_59828749GG>TT	uc001nom.2	+	2	243_244	c.115_116GG>TT	c.(115-117)GGA>TTA	p.G39L	MS4A3_uc001non.2_Missense_Mutation_p.G39L|MS4A3_uc001noo.2_Intron	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	39	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				GCCCATAGATGGATCACCAGAT	0.426			NA											8	50					0	0	0.004672	0	0
TMEM132A	54972	broad.mit.edu	37	11	60703723	60703723	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:60703723G>T	uc001nqj.2	+	11	2609	c.2416G>T	c.(2416-2418)GGT>TGT	p.G806C	TMEM132A_uc001nqi.2_Missense_Mutation_p.G807C|TMEM132A_uc001nqm.2_Missense_Mutation_p.G16C	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	806	Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GGGCAACACAGGTGTGAGGGG	0.557			NA											23	53					5.45024e-15	7.47266e-15	0.00333	1	0
VWCE	220001	broad.mit.edu	37	11	61026549	61026549	+	Silent	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:61026549A>G	uc001nra.2	-	20	2745	c.2466T>C	c.(2464-2466)GGT>GGC	p.G822G	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	822						extracellular region	calcium ion binding			ovary(1)	1						GTGAGTGTGGACCATGAGCTC	0.597			NA											10	35					0	0	0.008291	0	0
AHNAK	79026	broad.mit.edu	37	11	62288621	62288621	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:62288621C>A	uc001ntl.2	-	5	13568	c.13268G>T	c.(13267-13269)GGC>GTC	p.G4423V	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4423					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CAAACTGGGGCCTTTTATGTC	0.443			NA											47	186					7.88023e-25	1.18885e-24	0.00361	1	0
PPP2R5B	5526	broad.mit.edu	37	11	64694315	64694315	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:64694315G>A	uc001oby.2	+	3	916	c.331G>A	c.(331-333)GTG>ATG	p.V111M	PPP2R5B_uc001obz.2_Missense_Mutation_p.V111M	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	111					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						CAACGAGCTGGTGGAGTGTGT	0.652			NA											18	61					0	0	0.006122	0	0
TMEM151A	256472	broad.mit.edu	37	11	66061839	66061839	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:66061839C>A	uc001ohl.2	+	2	234	c.122C>A	c.(121-123)TCG>TAG	p.S41*		NM_153266	NP_694998	Q8N4L1	T151A_HUMAN	transmembrane protein 151A	41						integral to membrane				central_nervous_system(1)	1						TGCCGCGAGTCGCACTGGAAG	0.692			NA											13	75					9.31168e-06	1.06559e-05	0.001855	1	0
CD248	57124	broad.mit.edu	37	11	66084402	66084402	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:66084402T>A	uc001ohm.1	-	1	114	c.97A>T	c.(97-99)AGC>TGC	p.S33C		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	33	C-type lectin.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	GCGTAGCAGCTGCTGGGGCCG	0.761			NA											6	11					0	0	0.001168	0	0
ALDH3B2	222	broad.mit.edu	37	11	67432005	67432005	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:67432005C>A	uc001omr.2	-	8	1174	c.735G>T	c.(733-735)GAG>GAT	p.E245D	ALDH3B2_uc001oms.2_Missense_Mutation_p.E245D|ALDH3B2_uc009ysa.1_Missense_Mutation_p.E245D	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	245					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	CAGGCTCCGTCTCCTGCACGT	0.657			NA											20	58					0.00121646	0.00130957	0.008871	1	0
FGF3	2248	broad.mit.edu	37	11	69631115	69631115	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:69631115C>G	uc001oph.2	-	2	788	c.297G>C	c.(295-297)ATG>ATC	p.M99I		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	99					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			CCCTCTTGTTCATGGCCAGGT	0.592			NA											5	92					0	0	0.001168	0	0
INPPL1	3636	broad.mit.edu	37	11	71948810	71948810	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:71948810G>C	uc001osf.2	+	26	3669	c.3522G>C	c.(3520-3522)CGG>CGC	p.R1174R	INPPL1_uc001osg.2_Silent_p.R932R	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	1174					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CCCGCATCCGGGAGAGCATCC	0.672			NA											3	13					0	0	0.004672	0	0
LRRC32	2615	broad.mit.edu	37	11	76371892	76371892	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:76371892C>A	uc001oxq.3	-	3	988	c.745G>T	c.(745-747)GAC>TAC	p.D249Y	LRRC32_uc001oxr.3_Missense_Mutation_p.D249Y|LRRC32_uc010rsf.1_Missense_Mutation_p.D249Y	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	249	LRR 9.|Extracellular (Potential).					integral to plasma membrane					0						TCCCGCAGGTCAAGCCAGGTG	0.622			NA											15	57					3.27435e-08	3.94915e-08	0.00245	1	0
MYO7A	4647	broad.mit.edu	37	11	76867955	76867955	+	Missense_Mutation	SNP	G	G	A	rs111033283		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:76867955G>A	uc001oyb.2	+	7	912	c.640G>A	c.(640-642)GGA>AGA	p.G214R	MYO7A_uc010rsl.1_Missense_Mutation_p.G214R|MYO7A_uc010rsm.1_Missense_Mutation_p.G203R|MYO7A_uc001oyc.2_Missense_Mutation_p.G214R	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	214	Myosin head-like.		G -> R (in USH1B).		actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						AAGCCGTTTCGGAAAGTACAT	0.582			NA											5	56					0	0	0.00308	0	0
CCDC89	220388	broad.mit.edu	37	11	85396854	85396854	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:85396854T>A	uc001pau.1	-	1	467	c.320A>T	c.(319-321)CAG>CTG	p.Q107L		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	107	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CTCAGCCTCCTGCATCATCTT	0.562			NA											13	89					0	0	0.001855	0	0
CCDC83	220047	broad.mit.edu	37	11	85627137	85627137	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:85627137G>A	uc001pbh.1	+	10	1453	c.941G>A	c.(940-942)AGC>AAC	p.S314N	CCDC83_uc001pbg.1_Missense_Mutation_p.S345N|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.S214N	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	314										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TCAGATGAGAGCACTATCTTA	0.373			NA											28	159					0	0	0.00632	0	0
Unknown	0	broad.mit.edu	37	11	89774486	89774486	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:89774486G>T	uc010rua.1	+	7	1250	c.1127G>T	c.(1126-1128)GGA>GTA	p.G376V		NM_020358	NP_065091			ring finger protein 18												NA						GGAAAGGAGGGACTCTTTCTT	0.443			NA											24	87					1.64293e-13	2.20406e-13	0.00333	1	0
SLC35F2	54733	broad.mit.edu	37	11	107676120	107676120	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:107676120C>A	uc001pjq.2	-	5	1117	c.696G>T	c.(694-696)GTG>GTT	p.V232V	SLC35F2_uc010rvu.1_Silent_p.V84V|SLC35F2_uc001pjs.2_3'UTR	NM_017515	NP_059985	Q8IXU6	S35F2_HUMAN	solute carrier family 35, member F2	232	Helical; (Potential).				transport	integral to membrane				central_nervous_system(1)	1		all_cancers(61;9.46e-06)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;0.000111)|all_hematologic(158;0.000315)|all_epithelial(67;0.00197)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)|Epithelial(105;0.000105)|all cancers(92;0.00217)		CAAACAGGCCCACCATTCCTA	0.363			NA											10	28					0.00621372	0.00660776	0.006214	1	0
SC5DL	6309	broad.mit.edu	37	11	121174109	121174109	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:121174109G>C	uc001pxu.2	+	2	173	c.25G>C	c.(25-27)GAT>CAT	p.D9H	SC5DL_uc001pxs.1_Missense_Mutation_p.D9H|SC5DL_uc001pxt.2_Missense_Mutation_p.D9H|SC5DL_uc001pxv.2_Missense_Mutation_p.D9H	NM_006918	NP_008849	O75845	SC5D_HUMAN	sterol-C5-desaturase	9					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	C-5 sterol desaturase activity|iron ion binding|lathosterol oxidase activity			ovary(1)	1		Breast(109;0.00328)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)	OV - Ovarian serous cystadenocarcinoma(1;0.0334)	BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		CCGTGTTGCAGATTACTATTT	0.383			NA											24	78					0	0	0.00333	0	0
UBASH3B	84959	broad.mit.edu	37	11	122647789	122647789	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:122647789C>T	uc001pyi.3	+	3	633	c.273C>T	c.(271-273)GTC>GTT	p.V91V		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	91						cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		GGGAGTACGTCCTCTACCTCC	0.547			NA											8	54					0	0	0.00308	0	0
OR10G9	219870	broad.mit.edu	37	11	123894352	123894352	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:123894352C>T	uc010sad.1	+	1	633	c.633C>T	c.(631-633)CTC>CTT	p.L211L		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GCTGCTTTCTCCTGATAGTGC	0.567			NA											27	121					0	0	0.004656	0	0
ROBO3	64221	broad.mit.edu	37	11	124745497	124745497	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:124745497G>A	uc001qbc.2	+	15	2529	c.2337G>A	c.(2335-2337)TTG>TTA	p.L779L	ROBO3_uc010saq.1_5'Flank|ROBO3_uc001qbd.2_5'Flank|ROBO3_uc010sar.1_5'Flank|ROBO3_uc001qbe.2_5'Flank|ROBO3_uc001qbf.1_5'Flank	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	779	Fibronectin type-III 3.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		CGGTGGCCTTGGGGGGTGATG	0.607			NA											16	34					0	0	0.004007	0	0
SNX19	399979	broad.mit.edu	37	11	130785484	130785484	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:130785484C>G	uc001qgk.3	-	1	899	c.351G>C	c.(349-351)TGG>TGC	p.W117C	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_Intron|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Missense_Mutation_p.W117C|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	117	PXA.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		CGGAACGGTACCAAGATAACA	0.542			NA											25	38					0	0	0.00333	0	0
B3GAT1	27087	broad.mit.edu	37	11	134251899	134251899	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:134251899C>T	uc001qhq.2	-	6	1199	c.938G>A	c.(937-939)CGG>CAG	p.R313Q	B3GAT1_uc001qhr.2_Missense_Mutation_p.R313Q|B3GAT1_uc010scv.1_Missense_Mutation_p.R326Q	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	313	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		CTTCTCTGTCCGTGTGTGCCA	0.597			NA											7	51					0	0	0.00308	0	0
CACNA2D4	93589	broad.mit.edu	37	12	2022273	2022273	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:2022273G>T	uc001qjp.2	-	3	573	c.342C>A	c.(340-342)ATC>ATA	p.I114I	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.I114I	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	114	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CCACCTCCTCGATCTTCAGAC	0.537	Colon(2;101 179 21030 23310 28141)		NA											15	31					3.41278e-10	4.3255e-10	0.00499	1	0
NCAPD2	9918	broad.mit.edu	37	12	6640523	6640523	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:6640523C>T	uc001qoo.2	+	32	4197	c.4151C>T	c.(4150-4152)ACA>ATA	p.T1384I	NCAPD2_uc010sfd.1_Missense_Mutation_p.T1339I	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	1384					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						GAAGACGAGACACCCAAGAAA	0.443			NA											9	52					0	0	0.008291	0	0
CLEC1B	51266	broad.mit.edu	37	12	10149814	10149814	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:10149814T>A	uc001qwu.2	-	3	428	c.228A>T	c.(226-228)TTA>TTT	p.L76F	CLEC1B_uc009zhd.2_Missense_Mutation_p.L43F	NM_016509	NP_057593	Q9P126	CLC1B_HUMAN	C-type lectin domain family 1, member B isoform	76	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	protein binding|sugar binding|transmembrane receptor activity				0						AGCGCTTTGCTAATTGTTGCA	0.363			NA											6	38					0	0	0.001984	0	0
PTPRO	5800	broad.mit.edu	37	12	15652394	15652394	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:15652394C>A	uc001rcv.1	+	4	701	c.527C>A	c.(526-528)ACA>AAA	p.T176K	PTPRO_uc001rcw.1_Missense_Mutation_p.T176K|PTPRO_uc001rcu.1_Missense_Mutation_p.T176K	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	176	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				AAGGGAAAAACAGTATTTAAT	0.338			NA											28	72					1.2476e-16	1.75752e-16	0.00632	1	0
ABCC9	10060	broad.mit.edu	37	12	21958120	21958120	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:21958120C>G	uc001rfi.1	-	38	4658	c.4638G>C	c.(4636-4638)ATG>ATC	p.M1546I	ABCC9_uc001rfh.2_Intron|ABCC9_uc001rfj.1_Missense_Mutation_p.M1510I|ABCC9_uc001rfg.2_Intron	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1546	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity	p.R1546H(1)		ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ACTTGTTGGTCATCACCAAAG	0.438			NA											5	76					0	0	0.001168	0	0
C12orf71	728858	broad.mit.edu	37	12	27235055	27235055	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:27235055T>C	uc001rhq.2	-	1	401	c.362A>G	c.(361-363)AAA>AGA	p.K121R		NM_001080406	NP_001073875	A8MTZ7	CL071_HUMAN	hypothetical protein LOC728858	121											0						TGTTCTCTCTTTTGGTAACTT	0.408			NA											6	24					0	0	0.001984	0	0
C12orf35	55196	broad.mit.edu	37	12	32134413	32134413	+	Missense_Mutation	SNP	G	G	T	rs138191568	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:32134413G>T	uc001rks.2	+	4	938	c.524G>T	c.(523-525)CGA>CTA	p.R175L		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	175										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			AATTCTACACGACTTCCTGTA	0.418			NA											13	83					1.05317e-09	1.32329e-09	0.00245	1	0
C12orf35	55196	broad.mit.edu	37	12	32138614	32138614	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:32138614G>C	uc001rks.2	+	4	5139	c.4725G>C	c.(4723-4725)AAG>AAC	p.K1575N	C12orf35_uc001rkt.2_5'Flank	NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	1575										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			CCCAAGTAAAGGATCAAAAGA	0.358			NA											16	97					0	0	0.003163	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46355641	46355641	+	Splice_Site	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:46355641C>T	uc001rox.2	-	3	349	c.62_splice	c.e3-1	p.G21_splice	SFRS2IP_uc001roy.1_Splice_Site_p.G85_splice|SFRS2IP_uc009zki.1_Splice_Site|SFRS2IP_uc001roz.2_Splice_Site_p.G21_splice	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,						spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		TTTTCTTCACCTGTTAAAGTA	0.383			NA											26	33					0	0	0.00632	0	0
OR8S1	341568	broad.mit.edu	37	12	48921694	48921694	+	Splice_Site	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:48921694G>A	uc010slu.1	+	2	889	c.889_splice	c.e2-1	p.G297_splice		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCTGTTACAAGGGGGAAAGAA	0.468			NA											29	26					0	0	0.009535	0	0
KRT73	319101	broad.mit.edu	37	12	53004427	53004427	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:53004427G>C	uc001sas.2	-	7	1338	c.1303C>G	c.(1303-1305)CGC>GGC	p.R435G		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	435	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGCAGCTTGCGGTAGGTGGCG	0.602			NA											9	46					0	0	0.000978	0	0
ITGA5	3678	broad.mit.edu	37	12	54802718	54802718	+	Nonsense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:54802718G>A	uc001sga.2	-	5	672	c.604C>T	c.(604-606)CAG>TAG	p.Q202*	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	202	Extracellular (Potential).|FG-GAP 3.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CAGTAACCCTGTCCTGCTGCC	0.577			NA											30	35					0	0	0.008361	0	0
PAN2	9924	broad.mit.edu	37	12	56720556	56720556	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:56720556G>A	uc001skx.2	-	7	1480	c.1107C>T	c.(1105-1107)TCC>TCT	p.S369S	PAN2_uc001skw.2_5'Flank|PAN2_uc001skz.2_Silent_p.S369S|PAN2_uc001sky.2_Silent_p.S369S	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	369					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						CAGTCTCACGGGAGTAGGGGT	0.587			NA											36	53					0	0	0.004289	0	0
PTPRB	5787	broad.mit.edu	37	12	71016262	71016262	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:71016262C>A	uc001swc.3	-	3	660	c.616G>T	c.(616-618)GAG>TAG	p.E206*	PTPRB_uc001swa.3_Nonsense_Mutation_p.E206*|PTPRB_uc001swd.3_Nonsense_Mutation_p.E205*|PTPRB_uc009zrr.1_Nonsense_Mutation_p.E85*|PTPRB_uc001swe.2_Nonsense_Mutation_p.E206*	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGCTGCCTCTCGCTGCTGTTT	0.468			NA											23	31					7.87624e-14	1.06482e-13	0.00278	1	0
LGR5	8549	broad.mit.edu	37	12	71953410	71953410	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:71953410G>T	uc001swl.2	+	7	809	c.761G>T	c.(760-762)AGG>ATG	p.R254M	LGR5_uc001swm.2_Missense_Mutation_p.R254M|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	254	Extracellular (Potential).|LRR 8.					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						ACTGCAATTAGGACACTCTCC	0.269			NA											14	30					1.15088e-07	1.36725e-07	0.004007	1	0
TMEM19	55266	broad.mit.edu	37	12	72090237	72090237	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:72090237T>C	uc001sws.2	+	3	849	c.266T>C	c.(265-267)CTA>CCA	p.L89P	TMEM19_uc001swr.1_Missense_Mutation_p.L75P|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	89	Helical; (Potential).					integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		GGATTTATCCTAACCATTGCA	0.333			NA											32	62					0	0	0.003271	0	0
NTN4	59277	broad.mit.edu	37	12	96131706	96131706	+	Missense_Mutation	SNP	C	C	G	rs140109505		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:96131706C>G	uc001tei.2	-	3	1251	c.802G>C	c.(802-804)GCT>CCT	p.A268P	NTN4_uc009ztf.2_Missense_Mutation_p.A268P|NTN4_uc009ztg.2_Missense_Mutation_p.A231P	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	268	Laminin EGF-like 1.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CATTGATCAGCGTGGCCATTG	0.458			NA											21	32					0	0	0.001882	0	0
SLC25A3	5250	broad.mit.edu	37	12	98992384	98992384	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:98992384A>T	uc001tfo.2	+	5	667	c.547A>T	c.(547-549)ATG>TTG	p.M183L	SLC25A3_uc001tfm.2_Missense_Mutation_p.M182L|SLC25A3_uc001tfn.2_Missense_Mutation_p.M182L|SLC25A3_uc001tfp.2_Missense_Mutation_p.M182L|SLC25A3_uc001tfq.2_Missense_Mutation_p.M52L|SLC25A3_uc001tfr.2_Missense_Mutation_p.M183L|SLC25A3_uc001tfs.2_Missense_Mutation_p.M139L|SLC25A3_uc009ztn.2_Missense_Mutation_p.M182L|SLC25A3_uc001tft.2_Missense_Mutation_p.M182L|SNORA53_uc001tfu.1_5'Flank	NM_005888	NP_005879	Q00325	MPCP_HUMAN	solute carrier family 25 member 3 isoform a	183	Solcar 2.|Helical; Name=3; (Potential).				generation of precursor metabolites and energy	integral to plasma membrane|mitochondrial inner membrane	phosphate carrier activity|symporter activity				0		Lung NSC(355;4.08e-05)|Breast(359;0.00191)|Colorectal(145;0.00205)|Myeloproliferative disorder(1001;0.0255)		GBM - Glioblastoma multiforme(134;1.36e-23)|BRCA - Breast invasive adenocarcinoma(302;0.000115)		CCTGGCTCCTATGGAAGCTGC	0.458			NA											30	40					0	0	0.008361	0	0
C12orf42	374470	broad.mit.edu	37	12	103872158	103872158	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:103872158A>T	uc001tjt.2	-	2	135	c.47T>A	c.(46-48)CTA>CAA	p.L16Q	C12orf42_uc001tjs.2_RNA|C12orf42_uc009zuf.1_Missense_Mutation_p.L16Q|C12orf42_uc001tju.2_5'UTR	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	16										ovary(1)|central_nervous_system(1)	2						TCTGATGGTTAGCAAGAATTC	0.348			NA											11	7					0	0	0.00245	0	0
GLT8D2	83468	broad.mit.edu	37	12	104393245	104393245	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:104393245A>G	uc001tkh.1	-	6	738	c.332T>C	c.(331-333)GTG>GCG	p.V111A	GLT8D2_uc001tki.1_Missense_Mutation_p.V111A	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	111	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						GTTGAATTCCACGATTTTAAA	0.428			NA											56	47					0	0	0.00361	0	0
UNG	7374	broad.mit.edu	37	12	109547647	109547647	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:109547647T>G	uc001tnz.1	+	7	885	c.815T>G	c.(814-816)GTA>GGA	p.V272G	UNG_uc001toa.1_Missense_Mutation_p.V263G	NM_080911	NP_550433	P13051	UNG_HUMAN	uracil-DNA glycosylase isoform UNG2	272					base-excision repair|interspecies interaction between organisms	mitochondrion|nucleus	protein binding|uracil DNA N-glycosylase activity			lung(1)|central_nervous_system(1)	2						CGGCACCATGTACTACAGACG	0.353			NA						BER_DNA_glycosylases	Immune_Deficiency_with_Hyper-IgM				3	157					0	0	0.009096	0	0
RIMBP2	23504	broad.mit.edu	37	12	130907094	130907094	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:130907094G>C	uc001uil.2	-	13	2538	c.2374C>G	c.(2374-2376)CCA>GCA	p.P792A		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	792						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GCAGAGGCTGGGTTCCCTAAA	0.537			NA											4	27					0	0	0.009096	0	0
RIMBP2	23504	broad.mit.edu	37	12	130963483	130963483	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:130963483G>T	uc001uil.2	-	3	240	c.76C>A	c.(76-78)CAG>AAG	p.Q26K	RIMBP2_uc001uim.2_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	26						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		ATTTCCTGCTGCTTGGCACTG	0.662			NA											16	52					5.35267e-07	6.282e-07	0.007413	1	0
GPR133	283383	broad.mit.edu	37	12	131466608	131466608	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:131466608G>C	uc001uit.3	+	5	1049	c.490G>C	c.(490-492)GGC>CGC	p.G164R	GPR133_uc010tbm.1_Missense_Mutation_p.G196R	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	164	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CAGCCCCCCAGGTGAGTGACA	0.612			NA											6	43					0	0	0.001984	0	0
GPR133	283383	broad.mit.edu	37	12	131490582	131490582	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr12:131490582G>T	uc001uit.3	+	12	1880	c.1321G>T	c.(1321-1323)GCC>TCC	p.A441S	GPR133_uc010tbm.1_Missense_Mutation_p.A473S	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	441	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CATCTGGCCCGCCCACACCAA	0.652			NA											11	19					3.86212e-05	4.30661e-05	0.008291	1	0
FLT3	2322	broad.mit.edu	37	13	28623625	28623625	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:28623625C>T	uc001urw.2	-	8	1014	c.932G>A	c.(931-933)CGG>CAG	p.R311Q	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.R311Q	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	311	Extracellular (Potential).|Ig-like C2-type.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AAACAGAATCCGTATCATAGT	0.378			NA	Mis|O		AML|ALL								36	46					0	0	0.002836	0	0
FRY	10129	broad.mit.edu	37	13	32811922	32811922	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:32811922C>T	uc001utx.2	+	44	6713	c.6217C>T	c.(6217-6219)CAT>TAT	p.H2073Y	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2073					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ACTACTGGCACATATGCCACT	0.517			NA											3	33					0	0	0.009096	0	0
TRPC4	7223	broad.mit.edu	37	13	38225534	38225534	+	Missense_Mutation	SNP	T	T	G	rs114508439	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:38225534T>G	uc001uws.2	-	8	2182	c.1947A>C	c.(1945-1947)GAA>GAC	p.E649D	TRPC4_uc010abv.2_Missense_Mutation_p.E229D|TRPC4_uc001uwt.2_Missense_Mutation_p.E649D|TRPC4_uc010tey.1_Missense_Mutation_p.E649D|TRPC4_uc010abw.2_Missense_Mutation_p.E476D|TRPC4_uc010abx.2_Missense_Mutation_p.E649D|TRPC4_uc010aby.2_Intron	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	649	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GAGTACCTCCTTCTTCAAAAT	0.433			NA											22	34					0	0	0.001882	0	0
FREM2	341640	broad.mit.edu	37	13	39438599	39438599	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:39438599G>C	uc001uwv.2	+	16	8148	c.7839G>C	c.(7837-7839)CAG>CAC	p.Q2613H	FREM2_uc001uww.2_Missense_Mutation_p.Q699H	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2613	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATCCTTACCAGTACAGCTTGT	0.443			NA											45	52					0	0	0.00361	0	0
STOML3	161003	broad.mit.edu	37	13	39550731	39550731	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:39550731G>T	uc001uwx.2	-	3	313	c.175C>A	c.(175-177)CGT>AGT	p.R59S	STOML3_uc010tez.1_Missense_Mutation_p.R50S	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	59	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		ACAACAGCACGTTCATACTCC	0.483			NA											30	14					6.00712e-18	8.55917e-18	0.002445	1	0
C13orf23	80209	broad.mit.edu	37	13	39586281	39586281	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:39586281G>T	uc001uwy.2	-	12	3524	c.2651C>A	c.(2650-2652)TCA>TAA	p.S884*	C13orf23_uc001uwz.2_Nonsense_Mutation_p.S862*	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	884										ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		GGATGATTGTGAAGGATTCTG	0.453			NA											61	91					6.20203e-27	9.42191e-27	0.00361	1	0
PCDH17	27253	broad.mit.edu	37	13	58207235	58207235	+	Silent	SNP	C	C	T	rs139267359		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:58207235C>T	uc001vhq.1	+	1	1447	c.555C>T	c.(553-555)TCC>TCT	p.S185S	PCDH17_uc010aec.1_Silent_p.S185S	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	185	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		ACGTTAAGTCCCGCGGCGACG	0.637	Melanoma(72;952 1291 1619 12849 33676)		NA											4	12					0	0	0.001168	0	0
DACH1	1602	broad.mit.edu	37	13	72134027	72134027	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:72134027T>A	uc010thn.1	-	6	1783	c.1360A>T	c.(1360-1362)AGT>TGT	p.S454C	DACH1_uc010tho.1_Intron|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	506					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GATGGGTGACTGCCAGGCCTT	0.567			NA											9	14					0	0	0.008291	0	0
PIBF1	10464	broad.mit.edu	37	13	73468017	73468017	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:73468017T>G	uc001vjc.2	+	11	1723	c.1418T>G	c.(1417-1419)CTG>CGG	p.L473R	PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Missense_Mutation_p.L473R|PIBF1_uc010aep.2_Intron	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	473						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		GTTCAACTTCTGCAAGAGGAA	0.333			NA											17	26					0	0	0.007413	0	0
DZIP1	22873	broad.mit.edu	37	13	96238287	96238287	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:96238287G>C	uc001vmk.2	-	21	3174	c.2322C>G	c.(2320-2322)ATC>ATG	p.I774M	DZIP1_uc001vmi.2_Missense_Mutation_p.I22M|DZIP1_uc001vmj.2_Missense_Mutation_p.I250M|DZIP1_uc001vml.2_Missense_Mutation_p.I755M|DZIP1_uc001vmm.2_5'Flank	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	774					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			CTTCTTTTTTGATAAACATCT	0.348			NA											11	43					0	0	0.000978	0	0
C13orf28	122258	broad.mit.edu	37	13	113088847	113088847	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:113088847G>T	uc001vsd.1	+	7	603	c.572G>T	c.(571-573)AGC>ATC	p.S191I		NM_145248	NP_660291	Q96KW9	SPAC7_HUMAN	hypothetical protein LOC122258 precursor	191						extracellular region					0	all_lung(23;0.000633)|Lung NSC(43;0.0161)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0997)|Medulloblastoma(90;0.163)					CAGAGGAGGAGCCAAGGCAGT	0.587			NA											7	11					0.000274275	0.000300085	0.004482	1	0
OR4N2	390429	broad.mit.edu	37	14	20296000	20296000	+	Missense_Mutation	SNP	C	C	A	rs2873667		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:20296000C>A	uc010tkv.1	+	1	393	c.393C>A	c.(391-393)CAC>CAA	p.H131Q		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGCCTCTGCACTATCCTACTG	0.522			NA											86	336					5.52034e-35	8.6734e-35	0.00361	1	0
OR4K5	79317	broad.mit.edu	37	14	20389640	20389640	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:20389640G>C	uc010tkw.1	+	1	875	c.875G>C	c.(874-876)AGG>ACG	p.R292T		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTAAGGAATAGGGATATGAAG	0.403			NA											6	183					0	0	0.001984	0	0
OR10G2	26534	broad.mit.edu	37	14	22102704	22102704	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:22102704A>T	uc010tmc.1	-	1	295	c.295T>A	c.(295-297)TTT>ATT	p.F99I		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		CAGCCACCAAACGGGATAGCC	0.498			NA											7	36					0	0	0.00308	0	0
MYH7	4625	broad.mit.edu	37	14	23884905	23884905	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:23884905C>G	uc001wjx.2	-	35	5196	c.5090G>C	c.(5089-5091)CGG>CCG	p.R1697P		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1697	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTTCCGGGACCGCTCTGTCTG	0.622			NA											13	51					0	0	0.001855	0	0
MYH7	4625	broad.mit.edu	37	14	23894191	23894191	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:23894191C>A	uc001wjx.2	-	22	2572	c.2466G>T	c.(2464-2466)ATG>ATT	p.M822I		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	822			M -> L (in CMH1).|M -> T (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCTTGACCCCCATGAAGGCCC	0.552			NA											26	72					3.01185e-09	3.73589e-09	0.003954	1	0
NOVA1	4857	broad.mit.edu	37	14	26918112	26918112	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:26918112T>A	uc001wpy.2	-	5	895	c.577A>T	c.(577-579)ACT>TCT	p.T193S	NOVA1_uc001wpz.2_Missense_Mutation_p.T169S|NOVA1_uc001wqa.2_Missense_Mutation_p.T71S	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	196	KH 2.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GCCTTCACAGTAGCACCTCCC	0.433			NA											39	146					0	0	0.00623	0	0
ARHGAP5	394	broad.mit.edu	37	14	32562038	32562039	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:32562038_32562039GG>TT	uc001wrl.2	+	2	2402_2403	c.2163_2164GG>TT	c.(2161-2166)TTGGCA>TTTTCA	p.721_722LA>FS	ARHGAP5_uc001wrm.2_Missense_Mutation_p.721_722LA>FS|ARHGAP5_uc001wrn.2_Missense_Mutation_p.721_722LA>FS|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	721_722					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		GGCAGCAGTTGGCAAACAAGTT	0.381	NSCLC(9;77 350 3443 29227 41353)		NA											16	49					0	0	0.004672	0	0
EAPP	55837	broad.mit.edu	37	14	34998672	34998672	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:34998672G>A	uc001wsd.1	-	4	471	c.362C>T	c.(361-363)ACC>ATC	p.T121I		NM_018453	NP_060923	Q56P03	EAPP_HUMAN	E2F-associated phosphoprotein	121					negative regulation of transcription elongation from RNA polymerase II promoter|positive regulation of cell proliferation|positive regulation of transcription elongation from RNA polymerase II promoter	Golgi apparatus|nucleus|plasma membrane				ovary(1)	1	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00342)|Epithelial(34;0.18)	GBM - Glioblastoma multiforme(112;0.0196)		TTTTTTCTTGGTCACCTGTAC	0.353			NA											10	38					0	0	0.008291	0	0
PSMA6	5687	broad.mit.edu	37	14	35777229	35777229	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:35777229G>A	uc001wtd.2	+	2	215	c.106G>A	c.(106-108)GGC>AGC	p.G36S	KIAA0391_uc001wta.2_RNA|PSMA6_uc010tpt.1_Intron|PSMA6_uc010tpu.1_5'UTR	NM_002791	NP_002782	P60900	PSA6_HUMAN	proteasome alpha 6 subunit	36					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nuclear matrix|polysome|proteasome core complex, alpha-subunit complex|sarcomere	NF-kappaB binding|purine ribonucleoside triphosphate binding|RNA binding|threonine-type endopeptidase activity				0	Breast(36;0.0519)|Hepatocellular(127;0.158)		Lung(238;3.81e-05)|LUAD - Lung adenocarcinoma(48;5.59e-05)|Epithelial(34;0.00342)|all cancers(34;0.00973)	GBM - Glioblastoma multiforme(112;0.0234)		TAACCAGGGTGGCCTTACATC	0.348			NA											24	45					0	0	0.003954	0	0
FSCB	84075	broad.mit.edu	37	14	44974165	44974165	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:44974165C>T	uc001wvn.2	-	1	2335	c.2026G>A	c.(2026-2028)GAG>AAG	p.E676K		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	676	Ala-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		GGGGCCTCCTCAGCTGGTGGA	0.612			NA											14	21					0	0	0.00245	0	0
FANCM	57697	broad.mit.edu	37	14	45668130	45668130	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:45668130G>C	uc001wwd.3	+	22	6099	c.6000G>C	c.(5998-6000)ATG>ATC	p.M2000I	FANCM_uc010anf.2_Missense_Mutation_p.M1974I|FANCM_uc001wwe.3_Missense_Mutation_p.M1536I|FANCM_uc010ang.2_Missense_Mutation_p.M1249I	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	2000	Interaction with FAAP24 and EME1.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TGAAAAGGATGGCTAACAGGT	0.284			NA						Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				4	45					0	0	0.009096	0	0
PELI2	57161	broad.mit.edu	37	14	56755250	56755250	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:56755250C>T	uc001xch.2	+	4	691	c.405C>T	c.(403-405)ACC>ACT	p.T135T		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	135					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						CACAGAGCACCATATCCAGGT	0.507			NA											11	27					0	0	0.000978	0	0
FUT8	2530	broad.mit.edu	37	14	66082969	66082969	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:66082969A>C	uc001xin.2	+	5	1557	c.360A>C	c.(358-360)GAA>GAC	p.E120D	FUT8_uc001xio.2_Missense_Mutation_p.E120D|FUT8_uc010tsp.1_5'UTR|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Missense_Mutation_p.E120D|FUT8_uc001xiq.2_5'UTR	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	120	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		GGAGGATTGAAAATGGAGCTA	0.363			NA											12	61					0	0	0.001368	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68217815	68217815	+	Splice_Site	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:68217815T>A	uc001xka.2	-	41	7511	c.7372_splice	c.e41-1	p.E2458_splice	ZFYVE26_uc010tsz.1_Splice_Site|ZFYVE26_uc001xkb.2_Intron	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26						cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		CTCCAGCTCCTGTGCAGAACA	0.542			NA											7	52					0	0	0.001984	0	0
FLRT2	23768	broad.mit.edu	37	14	86089577	86089577	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:86089577C>A	uc001xvr.2	+	2	2486	c.1719C>A	c.(1717-1719)ACC>ACA	p.T573T	FLRT2_uc010atd.2_Silent_p.T573T	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	573	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		GGCGCTACACCTCCCAGAAGT	0.547			NA											44	72					2.37825e-27	3.62558e-27	0.002522	1	0
SERPINA9	327657	broad.mit.edu	37	14	94935730	94935730	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:94935730C>A	uc001ydf.2	-	2	663	c.502G>T	c.(502-504)GGC>TGC	p.G168C	SERPINA9_uc001yde.2_Intron|SERPINA9_uc010avc.2_Missense_Mutation_p.G19C|SERPINA9_uc001ydg.2_Missense_Mutation_p.G132C|SERPINA9_uc001ydh.1_Missense_Mutation_p.G168C|SERPINA9_uc001ydi.1_Missense_Mutation_p.G132C	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	150					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TTGACATTGCCCAAGAAATTT	0.498			NA											56	74					8.28887e-21	1.21682e-20	0.00361	1	0
DYNC1H1	1778	broad.mit.edu	37	14	102472468	102472468	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:102472468A>T	uc001yks.2	+	27	5841	c.5677A>T	c.(5677-5679)ACA>TCA	p.T1893S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1893	AAA 1 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TTTGACAATGACACAAGCCTT	0.453			NA											41	42					0	0	0.003214	0	0
RCOR1	23186	broad.mit.edu	37	14	103187709	103187709	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:103187709T>G	uc001ymb.2	+	10	1175	c.1175T>G	c.(1174-1176)GTA>GGA	p.V392G		NM_015156	NP_055971	Q9UKL0	RCOR1_HUMAN	REST corepressor 1	392	SANT 2.				blood coagulation|histone H4 deacetylation|interspecies interaction between organisms	transcriptional repressor complex	protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription regulatory region DNA binding			ovary(1)	1						CTTCTCGCCGTACAAGGTAGG	0.284			NA											11	13					0	0	0.000978	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103442278	103442278	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:103442278G>A	uc001ymi.1	-	10	1561	c.1329C>T	c.(1327-1329)TAC>TAT	p.Y443Y		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	443	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		TCCTCCTCTCGTAAGCTTCCA	0.607			NA											5	82					0	0	0.000602	0	0
AHNAK2	113146	broad.mit.edu	37	14	105405700	105405700	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:105405700T>C	uc010axc.1	-	7	16208	c.16088A>G	c.(16087-16089)GAT>GGT	p.D5363G	AHNAK2_uc001ypx.2_Missense_Mutation_p.D5263G	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5363						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGATGGCATATCAGTACTTGA	0.438			NA											20	31					0	0	0.008871	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418921	105418921	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr14:105418921T>A	uc010axc.1	-	7	2987	c.2867A>T	c.(2866-2868)GAT>GTT	p.D956V	AHNAK2_uc001ypx.2_Missense_Mutation_p.D856V	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	956						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CACCTCGCCATCGGGGGCTGT	0.622			NA											119	161					0	0	0.00361	0	0
GOLGA8C	729786	broad.mit.edu	37	15	20777882	20777882	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:20777882C>T	uc010tzc.1	+	18	2138	c.1123C>T	c.(1123-1125)CTT>TTT	p.L375F	uc001ytq.2_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E											skin(1)	1						CTCCAAAGATCTTTGTGAGGT	0.617			NA											7	132					0	0	0.004482	0	0
OR4M2	390538	broad.mit.edu	37	15	22368867	22368867	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:22368867A>T	uc010tzu.1	+	1	292	c.292A>T	c.(292-294)ATT>TTT	p.I98F	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGATGGATGCATTGCACAGCT	0.458			NA											56	807					0	0	0.00361	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413947	22413947	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:22413947C>A	uc001yuf.2	+	1	246	c.246C>A	c.(244-246)CTC>CTA	p.L82L		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						AGGTGGTCCTCATCATCCGCT	0.507			NA											15	442					3.41278e-10	4.3255e-10	0.00499	1	0
MKRN3	7681	broad.mit.edu	37	15	23812450	23812450	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:23812450G>T	uc001ywh.3	+	1	1997	c.1521G>T	c.(1519-1521)CTG>CTT	p.L507L	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Intron	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	507						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		ATTTGATTCTGTAGCATCGTG	0.458			NA											33	81					5.8336e-16	8.1783e-16	0.003271	1	0
RYR3	6263	broad.mit.edu	37	15	34023715	34023715	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:34023715G>T	uc001zhi.2	+	48	7314	c.7244G>T	c.(7243-7245)AGG>ATG	p.R2415M	RYR3_uc010bar.2_Missense_Mutation_p.R2415M	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2415	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCACTAAATAGGTATATATGT	0.502			NA											4	12					0.00024832	0.000272714	0.009096	1	0
GPR176	11245	broad.mit.edu	37	15	40093898	40093898	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:40093898C>A	uc001zkj.1	-	3	1849	c.983G>T	c.(982-984)CGC>CTC	p.R328L	GPR176_uc010uck.1_Missense_Mutation_p.R268L	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	328	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		CAAGCACTTGCGGACAGATTT	0.552			NA									OREG0023053	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	29					9.05144e-12	1.18157e-11	0.001855	1	0
MGA	23269	broad.mit.edu	37	15	41988781	41988781	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:41988781G>T	uc001zog.1	+	3	1664	c.1573G>T	c.(1573-1575)GAA>TAA	p.E525*	MGA_uc010ucy.1_Nonsense_Mutation_p.E525*|MGA_uc010ucz.1_Nonsense_Mutation_p.E525*	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	525						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CTTAGGCAAGGAATCAGAAAA	0.373			NA											9	29					0.00448238	0.00479	0.004482	1	0
FRMD5	84978	broad.mit.edu	37	15	44198064	44198064	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:44198064C>T	uc001ztl.2	-	6	690	c.513G>A	c.(511-513)CTG>CTA	p.L171L	FRMD5_uc001ztj.1_5'UTR|FRMD5_uc001ztk.1_Silent_p.L82L|FRMD5_uc001ztm.2_5'UTR|FRMD5_uc001ztn.2_5'UTR	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	171	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		TTTTCCTTTCCAGCTTCTCTG	0.488			NA											21	50					0	0	0.00278	0	0
CEP152	22995	broad.mit.edu	37	15	49085535	49085535	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:49085535T>C	uc001zwy.2	-	7	849	c.815A>G	c.(814-816)CAG>CGG	p.Q272R	CEP152_uc001zwz.2_Missense_Mutation_p.Q272R|CEP152_uc001zxa.1_Missense_Mutation_p.Q179R	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	272	Potential.				centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		TATTACAAGCTGGTGATTCAG	0.234			NA											9	35					0	0	0.008291	0	0
RFX7	64864	broad.mit.edu	37	15	56390279	56390279	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:56390279C>A	uc010bfn.2	-	8	1107	c.1107G>T	c.(1105-1107)CCG>CCT	p.P369P	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Silent_p.P183P	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	272					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						ATTATATTACCGGAATGGGAC	0.403			NA											8	29					2.17888e-05	2.45476e-05	0.006214	1	0
ZWILCH	55055	broad.mit.edu	37	15	66832443	66832443	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:66832443C>T	uc002aqb.2	+	17	1828	c.1582C>T	c.(1582-1584)CCA>TCA	p.P528S	ZWILCH_uc010bhu.1_Missense_Mutation_p.P414S|ZWILCH_uc002aqa.2_Missense_Mutation_p.P414S|ZWILCH_uc010bhv.2_Missense_Mutation_p.P414S	NM_017975	NP_060445	Q9H900	ZWILC_HUMAN	Zwilch	528					cell division|mitotic cell cycle checkpoint|mitotic prometaphase	condensed chromosome kinetochore|cytosol	protein binding			ovary(1)	1						TAGTGAGAAGCCACAGAAATG	0.284			NA											8	22					0	0	0.00308	0	0
SMAD3	4088	broad.mit.edu	37	15	67473647	67473647	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:67473647C>T	uc002aqj.2	+	6	1025	c.727C>T	c.(727-729)CGC>TGC	p.R243C	SMAD3_uc010ujr.1_Missense_Mutation_p.R138C|SMAD3_uc010ujs.1_Missense_Mutation_p.R199C|SMAD3_uc010ujt.1_Missense_Mutation_p.R48C	NM_005902	NP_005893	P84022	SMAD3_HUMAN	mothers against decapentaplegic homolog 3	243	MH2.				activation of caspase activity|cell cycle arrest|cell-cell junction organization|evasion of host defenses by virus|immune response|induction of apoptosis|negative regulation of cell growth|negative regulation of mitotic cell cycle|negative regulation of protein catabolic process|negative regulation of protein phosphorylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|protein stabilization|regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|transport|wound healing	cytosol|nuclear inner membrane|receptor complex	beta-catenin binding|co-SMAD binding|metal ion binding|protein homodimerization activity|protein kinase binding|R-SMAD binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor binding|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|ubiquitin protein ligase binding			large_intestine(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5				Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(7;0.125)		GCTGAACCAGCGCGTCGGGGA	0.607			NA											4	20					0	0	0.009096	0	0
TLE3	7090	broad.mit.edu	37	15	70345643	70345643	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:70345643C>A	uc002asm.2	-	17	3025	c.1906G>T	c.(1906-1908)GGG>TGG	p.G636W	TLE3_uc002ask.2_Missense_Mutation_p.G563W|TLE3_uc002asl.2_Missense_Mutation_p.G636W|TLE3_uc010ukd.1_Missense_Mutation_p.G626W|TLE3_uc010bik.1_Missense_Mutation_p.G217W|TLE3_uc010bil.1_Missense_Mutation_p.G633W|TLE3_uc002asn.2_Missense_Mutation_p.G624W|TLE3_uc002asp.2_Missense_Mutation_p.G628W|TLE3_uc002aso.2_Missense_Mutation_p.G631W	NM_005078	NP_005069	Q04726	TLE3_HUMAN	transducin-like enhancer protein 3 isoform a	636	WD 4.				organ morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|protein binding			lung(2)	2						TCCAGGCCCCCTGTCCACAGT	0.627			NA											4	8					0.00909568	0.00956747	0.009096	1	0
UACA	55075	broad.mit.edu	37	15	70961608	70961608	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:70961608G>A	uc002asr.2	-	16	1519	c.1415C>T	c.(1414-1416)GCA>GTA	p.A472V	UACA_uc010uke.1_Missense_Mutation_p.A363V|UACA_uc002asq.2_Missense_Mutation_p.A459V|UACA_uc010bin.1_Missense_Mutation_p.A447V	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	472	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						TTTGCATTCTGCCACTTTGTG	0.383			NA											70	115					0	0	0.00361	0	0
UBE2Q2	92912	broad.mit.edu	37	15	76168613	76168613	+	Splice_Site	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:76168613G>A	uc002bbg.2	+	6	1059	c.673_splice	c.e6+1	p.G225_splice	UBE2Q2_uc002bbh.2_Splice_Site_p.G190_splice|UBE2Q2_uc010umn.1_Splice_Site_p.G209_splice|UBE2Q2_uc002bbi.2_Splice_Site_p.G106_splice	NM_173469	NP_775740	Q8WVN8	UB2Q2_HUMAN	ubiquitin-conjugating enzyme E2Q 2 isoform 1						protein K48-linked ubiquitination	cytoplasm	ATP binding|ubiquitin-protein ligase activity			ovary(2)	2						TATAAAACAGGTAAGGATCTC	0.388			NA											70	116					0	0	0.00361	0	0
LOC645752	645752	broad.mit.edu	37	15	78211609	78211609	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:78211609T>C	uc010bky.2	-	11	922	c.158A>G	c.(157-159)CAG>CGG	p.Q53R		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						ATCTTGTAGCTGTTCCACCAC	0.567			NA											13	132					0	0	0.001855	0	0
CHRNB4	1143	broad.mit.edu	37	15	78922232	78922232	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:78922232C>T	uc002bed.1	-	5	527	c.415G>A	c.(415-417)GGC>AGC	p.G139S	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_5'UTR	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	139	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						AGGACGCTGCCGTTGGACCGG	0.572			NA											3	51					0	0	0.004672	0	0
AP3B2	8120	broad.mit.edu	37	15	83349905	83349905	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:83349905G>C	uc010uoh.1	-	6	724	c.547C>G	c.(547-549)CTG>GTG	p.L183V	AP3B2_uc010uoi.1_Missense_Mutation_p.L183V|AP3B2_uc010uoj.1_Missense_Mutation_p.L151V|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	183					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			ACTTCTATCAGCTGATCCTTC	0.572			NA											4	17					0	0	0.009096	0	0
NTRK3	4916	broad.mit.edu	37	15	88576157	88576157	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:88576157T>C	uc002bme.1	-	13	1678	c.1516A>G	c.(1516-1518)ACT>GCT	p.T506A	NTRK3_uc002bmh.2_Missense_Mutation_p.T498A|NTRK3_uc002bmf.1_Missense_Mutation_p.T506A|NTRK3_uc010upl.1_Missense_Mutation_p.T408A|NTRK3_uc010bnh.1_Missense_Mutation_p.T498A|NTRK3_uc002bmg.2_Missense_Mutation_p.T506A|NTRK3_uc010bni.2_RNA	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	506	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGGATGCGAGTCATGCCAATG	0.592			NA	T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			4	27					0	0	0.009096	0	0
ACAN	176	broad.mit.edu	37	15	89414627	89414627	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:89414627G>A	uc010upo.1	+	14	7335	c.6961G>A	c.(6961-6963)GAG>AAG	p.E2321K	ACAN_uc010upp.1_Missense_Mutation_p.E2283K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2321					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGAGGTATGTGAGGAGGGCTG	0.622			NA											8	31					0	0	0.00308	0	0
POLG	5428	broad.mit.edu	37	15	89865046	89865046	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:89865046A>G	uc002bns.3	-	16	2801	c.2519T>C	c.(2518-2520)ATC>ACC	p.I840T	POLG_uc002bnr.3_Missense_Mutation_p.I840T	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	840					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			TTGGGGCAGGATGGCCCCATA	0.617	Colon(73;648 1203 11348 18386 27782)		NA						DNA_polymerases_(catalytic_subunits)					11	54					0	0	0.000978	0	0
SYNM	23336	broad.mit.edu	37	15	99672530	99672530	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:99672530A>T	uc002bup.2	+	6	4085	c.3965A>T	c.(3964-3966)CAG>CTG	p.Q1322L	SYNM_uc002buo.2_Intron|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	1322	Tail.|Interaction with DMD and UTRN.|Interaction with TLN1 and VCL.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						CAGACCACCCAGCAGATAGTT	0.562	Pancreas(125;1071 1762 21750 40003 40381)		NA											26	107					0	0	0.004656	0	0
LYSMD4	145748	broad.mit.edu	37	15	100269825	100269825	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr15:100269825C>T	uc002bvk.2	-	3	457	c.394G>A	c.(394-396)GAA>AAA	p.E132K	LYSMD4_uc002bvj.1_Intron|LYSMD4_uc010bou.1_Intron|LYSMD4_uc002bvl.2_Missense_Mutation_p.E133K|LYSMD4_uc002bvm.2_3'UTR|LYSMD4_uc010bov.2_Missense_Mutation_p.E132K			Q5XG99	LYSM4_HUMAN	SubName: Full=cDNA FLJ77040, highly similar to Homo sapiens LysM, putative peptidoglycan-binding, domain containing 4, mRNA; SubName: Full=LysM, putative peptidoglycan-binding, domain containing 4, isoform CRA_c;	132	Extracellular (Potential).				cell wall macromolecule catabolic process	integral to membrane					0	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00162)|LUSC - Lung squamous cell carcinoma(107;0.17)|Lung(145;0.208)			GGTTTCAGTTCTTTGTGGGTC	0.522			NA											17	100					0	0	0.007413	0	0
EME2	197342	broad.mit.edu	37	16	1825092	1825092	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:1825092C>T	uc002cmq.1	+	4	528	c.528C>T	c.(526-528)GCC>GCT	p.A176A	MRPS34_uc002cmn.2_5'Flank|MRPS34_uc002cmo.2_5'Flank|MRPS34_uc002cmp.1_5'Flank|EME2_uc010brw.1_Silent_p.A176A	NM_001010865	NP_001010865	A4GXA9	EME2_HUMAN	essential meiotic endonuclease 1 homolog 2	176					DNA recombination|DNA repair	nucleus	DNA binding|endonuclease activity			lung(1)|central_nervous_system(1)|pancreas(1)	3						AGACCACCGCCCGGCCCCACC	0.647			NA						Direct_reversal_of_damage|Homologous_recombination					15	136					0	0	0.004007	0	0
CLDN9	9080	broad.mit.edu	37	16	3063924	3063924	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:3063924G>A	uc010uwo.1	+	1	1468	c.561G>A	c.(559-561)CCG>CCA	p.P187P		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	187	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CGTGCCCCCCGCCCCAGGTCG	0.721			NA											45	41					0	0	0.00361	0	0
TIGD7	91151	broad.mit.edu	37	16	3349677	3349677	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:3349677C>T	uc002cus.2	-	1	1724	c.938G>A	c.(937-939)CGA>CAA	p.R313Q	ZNF263_uc002cur.2_3'UTR	NM_033208	NP_149985	Q6NT04	TIGD7_HUMAN	tigger transposable element derived 7	313	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						ACATTTTATTCGACCATCCTC	0.338			NA											9	66					0	0	0.004482	0	0
TFAP4	7023	broad.mit.edu	37	16	4310143	4310143	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:4310143G>T	uc010uxg.1	-	6	1024	c.770C>A	c.(769-771)TCG>TAG	p.S257*		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	257					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						GTTGATGACCGAGGAGGGGCC	0.627			NA											83	67					3.7744e-50	6.07246e-50	0.00361	1	0
GRIN2A	2903	broad.mit.edu	37	16	9858360	9858360	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:9858360C>A	uc002czo.3	-	13	3589	c.3041G>T	c.(3040-3042)TGG>TTG	p.W1014L	GRIN2A_uc010uym.1_Missense_Mutation_p.W1014L|GRIN2A_uc010uyn.1_Missense_Mutation_p.W857L|GRIN2A_uc002czr.3_Missense_Mutation_p.W1014L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1014	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGATTTCTTCCACAGCTGCCG	0.532			NA											5	115					1.024e-07	1.22655e-07	0.000602	1	0
ZP2	7783	broad.mit.edu	37	16	21215360	21215360	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:21215360G>C	uc002dii.2	-	9	963	c.963C>G	c.(961-963)CTC>CTG	p.L321L	ZP2_uc010bwn.1_Silent_p.L360L|ZP2_uc010bwo.2_Silent_p.L360L	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	321	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CTTTCGTTTTGAGCAGAGTTT	0.433			NA											3	50					0	0	0.004672	0	0
AHSP	51327	broad.mit.edu	37	16	31539839	31539839	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:31539839A>G	uc002ecj.2	+	3	221	c.136A>G	c.(136-138)AAC>GAC	p.N46D		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	46					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						GGACTGGATGAACTTCTACAT	0.547			NA											18	55					0	0	0.007413	0	0
SLC12A3	6559	broad.mit.edu	37	16	56904030	56904030	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:56904030C>T	uc010ccm.2	+	5	653	c.624C>T	c.(622-624)TCC>TCT	p.S208S	SLC12A3_uc002ekd.3_Silent_p.S208S|SLC12A3_uc010ccn.2_Silent_p.S207S	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	208	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TCCTCATCTCCCGGAGTCTGG	0.627			NA											5	89					0	0	0.001168	0	0
KIFC3	3801	broad.mit.edu	37	16	57804605	57804605	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:57804605A>C	uc002emp.2	-	7	970	c.773T>G	c.(772-774)ATC>AGC	p.I258S	KIFC3_uc010vhw.1_Missense_Mutation_p.I156S|KIFC3_uc002emn.2_RNA|KIFC3_uc002emm.2_Missense_Mutation_p.I119S|KIFC3_uc010vhx.1_Missense_Mutation_p.I119S|KIFC3_uc010cdf.2_Missense_Mutation_p.I119S|KIFC3_uc002emo.3_Missense_Mutation_p.I119S|KIFC3_uc010vhy.1_Missense_Mutation_p.I200S|KIFC3_uc002emq.2_Missense_Mutation_p.I258S|KIFC3_uc010vhz.1_Missense_Mutation_p.I280S|KIFC3_uc002emr.1_Intron	NM_005550	NP_005541	Q9BVG8	KIFC3_HUMAN	kinesin family member C3 isoform 1	258	Potential.				epithelial cell-cell adhesion|microtubule-based movement|visual perception|zonula adherens maintenance	centrosome|cytoplasmic vesicle membrane|kinesin complex|microtubule|zonula adherens	ATP binding|microtubule motor activity			central_nervous_system(2)|ovary(1)	3		all_neural(199;0.224)				CACTGTCTTGATGACATACTG	0.632			NA											2	5					0	0	0.004672	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77393252	77393252	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:77393252C>A	uc002ffc.3	-	8	1704	c.1285G>T	c.(1285-1287)GGC>TGC	p.G429C	ADAMTS18_uc010chc.1_Missense_Mutation_p.G17C|ADAMTS18_uc002ffe.1_Missense_Mutation_p.G125C|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	429	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AAGGCAAGGCCAAGTCCTGTG	0.453			NA											15	14					1.02788e-11	1.33778e-11	0.00499	1	0
FBXO31	79791	broad.mit.edu	37	16	87377299	87377299	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:87377299A>G	uc002fjw.2	-	4	606	c.562T>C	c.(562-564)TTC>CTC	p.F188L	FBXO31_uc010vot.1_Missense_Mutation_p.F16L|FBXO31_uc002fjv.2_Missense_Mutation_p.F80L	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	188					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)		AGAGGCTTGAATCTCATAGGG	0.587			NA											3	24					0	0	0.004672	0	0
CDH15	1013	broad.mit.edu	37	16	89245971	89245971	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:89245971C>A	uc002fmt.2	+	2	267	c.190C>A	c.(190-192)CCC>ACC	p.P64T	CDH15_uc010cij.1_Missense_Mutation_p.P64T	NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	64	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		TCTCCCCTACCCCCTGGTTCA	0.677			NA											27	73					1.04121e-07	1.24546e-07	0.005443	1	0
DPEP1	1800	broad.mit.edu	37	16	89703053	89703053	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:89703053G>T	uc010cin.2	+	5	686	c.483G>T	c.(481-483)ATG>ATT	p.M161I	DPEP1_uc002fnr.3_Missense_Mutation_p.M161I|DPEP1_uc002fns.3_Missense_Mutation_p.M161I	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	161					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	AGCTGGGCATGCGGTACCTGA	0.677			NA											9	44					2.52707e-12	3.32369e-12	0.006214	1	0
GSG2	83903	broad.mit.edu	37	17	3629369	3629369	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:3629369G>C	uc002fwp.2	+	1	2173	c.2140G>C	c.(2140-2142)GAC>CAC	p.D714H	ITGAE_uc002fwo.3_Intron|ITGAE_uc002fwn.3_5'Flank	NM_031965	NP_114171	Q8TF76	HASP_HUMAN	haspin	714	Protein kinase.				cell cycle|chromatin modification|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity				0						GTTTACCGGTGACGGTGACTA	0.473			NA											8	71					0	0	0.00308	0	0
ZFP3	124961	broad.mit.edu	37	17	4996298	4996298	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:4996298G>C	uc002gaq.2	+	2	1624	c.1499G>C	c.(1498-1500)TGT>TCT	p.C500S		NM_153018	NP_694563	Q96NJ6	ZFP3_HUMAN	zinc finger protein-3	500					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTGTTCACTGTATGGAGTAA	0.393			NA											6	53					0	0	0.001168	0	0
PFAS	5198	broad.mit.edu	37	17	8169551	8169551	+	Splice_Site	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:8169551G>T	uc002gkr.2	+	22	2843	c.2702_splice	c.e22-1	p.D901_splice	PFAS_uc010vuv.1_Splice_Site_p.D477_splice|PFAS_uc002gks.2_Splice_Site	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase						'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CCTTCCTCCAGACCGCCTCCT	0.582			NA											18	24					8.28177e-16	1.15732e-15	0.007413	1	0
MYH13	8735	broad.mit.edu	37	17	10231408	10231408	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:10231408G>A	uc002gmk.1	-	22	2556	c.2466C>T	c.(2464-2466)ATC>ATT	p.I822I		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	822					muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TAAAAGAGCGGATGTTGTACT	0.512			NA									OREG0024177	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	20					0	0	0.002445	0	0
MYH1	4619	broad.mit.edu	37	17	10419268	10419268	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:10419268G>T	uc002gmo.2	-	5	574	c.480C>A	c.(478-480)GAC>GAA	p.D160E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	160	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GATAGGCATTGTCAGAGATGG	0.423			NA											100	118					1.66795e-42	2.64927e-42	0.00361	1	0
MYH2	4620	broad.mit.edu	37	17	10427854	10427854	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:10427854C>G	uc010coi.2	-	35	5232	c.5104G>C	c.(5104-5106)GAG>CAG	p.E1702Q	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1702Q|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1702	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTGCTCCTCTCTGTCTGTTCC	0.577			NA											35	55					0	0	0.003755	0	0
DNAH9	1770	broad.mit.edu	37	17	11522884	11522884	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:11522884C>A	uc002gne.2	+	6	1204	c.1136C>A	c.(1135-1137)CCA>CAA	p.P379Q		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	379	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TATCTCAGCCCAGAAGACCTG	0.438			NA											53	57					1.11015e-26	1.68357e-26	0.00361	1	0
DNAH9	1770	broad.mit.edu	37	17	11778317	11778317	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:11778317G>A	uc002gne.2	+	53	10362	c.10294G>A	c.(10294-10296)GAT>AAT	p.D3432N	DNAH9_uc010coo.2_Missense_Mutation_p.D2726N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3432	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCTGATGGATGATGCTGACGT	0.582			NA											36	56					0	0	0.003755	0	0
MYOCD	93649	broad.mit.edu	37	17	12666801	12666801	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:12666801C>T	uc002gnn.2	+	13	2956	c.2657C>T	c.(2656-2658)CCC>CTC	p.P886L	MYOCD_uc002gno.2_Missense_Mutation_p.P934L|MYOCD_uc002gnq.2_Missense_Mutation_p.P610L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	886					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ACTGAATCTCCCTGGGAAACC	0.547			NA											26	27					0	0	0.003954	0	0
NCOR1	9611	broad.mit.edu	37	17	16049783	16049783	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:16049783C>A	uc002gpo.2	-	10	1229	c.989G>T	c.(988-990)CGG>CTG	p.R330L	NCOR1_uc002gpn.2_Missense_Mutation_p.R330L|NCOR1_uc002gpp.1_Missense_Mutation_p.R221L|NCOR1_uc002gpr.2_Missense_Mutation_p.R221L|NCOR1_uc002gps.1_Missense_Mutation_p.R339L|NCOR1_uc010coz.1_Missense_Mutation_p.R146L|NCOR1_uc010cpb.1_Missense_Mutation_p.R339L|NCOR1_uc010cpa.1_Missense_Mutation_p.R330L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	330	Interaction with ZBTB33 and HEXIM1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		AGCTTTCCTCCGAGGATTATT	0.378			NA											29	42					1.5548e-18	2.23358e-18	0.005443	1	0
TOM1L2	146691	broad.mit.edu	37	17	17754212	17754212	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:17754212C>A	uc002grz.3	-	13	1490	c.1333G>T	c.(1333-1335)GAC>TAC	p.D445Y	TOM1L2_uc002gry.3_Missense_Mutation_p.D395Y|TOM1L2_uc010vwy.1_Missense_Mutation_p.D421Y|TOM1L2_uc010cpr.2_Missense_Mutation_p.D400Y|TOM1L2_uc010vwz.1_Missense_Mutation_p.D326Y|TOM1L2_uc010vxa.1_Intron|TOM1L2_uc002grv.3_Missense_Mutation_p.D178Y	NM_001082968	NP_001076437	Q6ZVM7	TM1L2_HUMAN	target of myb1-like 2 isoform 3	445					intracellular protein transport	intracellular					0	all_neural(463;0.228)					CTCACCAGGTCGGTCCTGAGC	0.622	Melanoma(192;2505 2909 14455 25269)		NA											26	33					5.61819e-17	7.95302e-17	0.005443	1	0
KIAA0100	9703	broad.mit.edu	37	17	26964910	26964910	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:26964910C>A	uc002hbu.2	-	14	1814	c.1715G>T	c.(1714-1716)TGG>TTG	p.W572L		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	572						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					GTCCACCTTCCACAGTAATGA	0.443			NA											10	63					7.03913e-09	8.65743e-09	0.001368	1	0
NF1	4763	broad.mit.edu	37	17	29527486	29527486	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:29527486G>C	uc002hgg.2	+	9	1268	c.935G>C	c.(934-936)GGA>GCA	p.G312A	NF1_uc002hge.1_Missense_Mutation_p.G312A|NF1_uc002hgf.1_Missense_Mutation_p.G312A|NF1_uc002hgh.2_Missense_Mutation_p.G312A|NF1_uc010csn.1_Missense_Mutation_p.G172A	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	312					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GGCCATGGAGGAAGTAGGCAG	0.383			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			20	38					0	0	0.002299	0	0
AMAC1	146861	broad.mit.edu	37	17	33520748	33520748	+	Nonsense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:33520748A>T	uc002hjd.2	-	1	665	c.579T>A	c.(577-579)TAT>TAA	p.Y193*		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	193	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		AAGCCTCCACATAGCCCAGGG	0.592			NA											73	107					0	0	0.00361	0	0
SLFN13	146857	broad.mit.edu	37	17	33768061	33768061	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:33768061T>C	uc002hjk.1	-	4	2577	c.2247A>G	c.(2245-2247)ATA>ATG	p.I749M	SLFN13_uc010wch.1_Missense_Mutation_p.I749M|SLFN13_uc002hjl.2_Missense_Mutation_p.I749M|SLFN13_uc010ctt.2_Missense_Mutation_p.I431M|SLFN13_uc002hjm.2_Missense_Mutation_p.I418M	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	749						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GAGGATTTTCTATAATTAGTT	0.413			NA											40	143					0	0	0.005524	0	0
CACNB1	782	broad.mit.edu	37	17	37347809	37347809	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:37347809G>C	uc002hrm.1	-	3	362	c.209C>G	c.(208-210)TCT>TGT	p.S70C	CACNB1_uc002hrl.1_5'UTR|CACNB1_uc002hrn.2_Missense_Mutation_p.S70C|CACNB1_uc002hro.2_Missense_Mutation_p.S70C|CACNB1_uc002hrp.1_Missense_Mutation_p.S70C|CACNB1_uc010web.1_Missense_Mutation_p.S23C	NM_000723	NP_000714	Q02641	CACB1_HUMAN	calcium channel, voltage-dependent, beta 1	70					axon guidance	voltage-gated calcium channel complex				large_intestine(1)|ovary(1)	2					Ibutilide(DB00308)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Verapamil(DB00661)	AGATACATCAGAGTCTGATGG	0.587	Esophageal Squamous(5;100 366 38393 41452 45827)		NA											5	56					0	0	0.000602	0	0
KRT26	353288	broad.mit.edu	37	17	38925158	38925158	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:38925158T>A	uc002hvf.2	-	6	1206	c.1160A>T	c.(1159-1161)TAT>TTT	p.Y387F		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	387	Rod.|Coil 2.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				TAAGTTGCAATAAATGTCAAT	0.328			NA											15	24					0	0	0.00245	0	0
KRT28	162605	broad.mit.edu	37	17	38948732	38948732	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:38948732C>G	uc002hvh.1	-	8	1408	c.1342G>C	c.(1342-1344)GAA>CAA	p.E448Q		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	448	Tail.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GATGTCTTTTCTTCAATGGAG	0.363	Melanoma(19;789 869 15380 26882 39836)		NA											21	37					0	0	0.002299	0	0
KRT38	8687	broad.mit.edu	37	17	39597003	39597003	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:39597003C>A	uc002hwq.1	-	1	594	c.171G>T	c.(169-171)GTG>GTT	p.V57V		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	57	Head.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				GAGTGGACCCCACACGGACTC	0.632			NA											10	47					0.000673444	0.000730402	0.008291	1	0
KRT19	3880	broad.mit.edu	37	17	39684318	39684318	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:39684318T>C	uc002hxd.3	-	1	324	c.182A>G	c.(181-183)TAC>TGC	p.Y61C	JUP_uc010wfs.1_Intron	NM_002276	NP_002267	P08727	K1C19_HUMAN	keratin 19	61	Head.				interspecies interaction between organisms|response to estrogen stimulus|sarcomere organization	costamere|intermediate filament	protein binding|structural constituent of cytoskeleton|structural constituent of muscle				0		Breast(137;0.00038)				GCCGCCGCCGTAGGCCCCCGA	0.716			NA											19	31					0	0	0.008871	0	0
COASY	80347	broad.mit.edu	37	17	40715990	40715990	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:40715990C>T	uc002hzz.2	+	3	869	c.712C>T	c.(712-714)CCT>TCT	p.P238S	COASY_uc010cyj.2_Missense_Mutation_p.P267S|COASY_uc002iab.2_5'UTR|COASY_uc002iad.2_Missense_Mutation_p.P238S|COASY_uc002iac.2_Missense_Mutation_p.P238S|COASY_uc002iae.2_5'UTR	NM_001042529	NP_001035994	Q13057	COASY_HUMAN	coenzyme A synthase isoform a	238	Phosphopantetheine adenylyltransferase.				coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial outer membrane	ATP binding|dephospho-CoA kinase activity|pantetheine-phosphate adenylyltransferase activity				0		all_cancers(22;1.06e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)		CAAGTTGCTCCCTGAGCTGCT	0.498			NA											14	96					0	0	0.004007	0	0
HOXB9	3219	broad.mit.edu	37	17	46703290	46703290	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:46703290C>G	uc002inx.2	-	1	546	c.342G>C	c.(340-342)GCG>GCC	p.A114A		NM_024017	NP_076922	P17482	HXB9_HUMAN	homeobox B9	114					canonical Wnt receptor signaling pathway|cell chemotaxis	mitochondrion|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCTTCACCGCCGCCTGGCCCT	0.751			NA											7	9					0	0	0.00308	0	0
APPBP2	10513	broad.mit.edu	37	17	58571945	58571945	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:58571945C>A	uc002iys.1	-	3	549	c.261G>T	c.(259-261)ATG>ATT	p.M87I	APPBP2_uc010ddl.1_Missense_Mutation_p.M16I	NM_006380	NP_006371	Q92624	APBP2_HUMAN	amyloid beta precursor protein-binding protein	87					intracellular protein transport	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|nucleus	microtubule motor activity|protein binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.67e-13)|all cancers(12;1.44e-11)|Colorectal(3;0.01)			CACCATGATCCATCAAAGCCT	0.348			NA											40	40					9.58827e-17	1.35291e-16	0.00361	1	0
INTS2	57508	broad.mit.edu	37	17	60003898	60003898	+	Silent	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:60003898A>T	uc002izn.2	-	2	208	c.132T>A	c.(130-132)CTT>CTA	p.L44L	INTS2_uc002izm.2_Silent_p.L36L	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	44					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						AGGGCAGAAGAAGTCTTAATT	0.468			NA											3	24					0	0	0.009096	0	0
KIF19	124602	broad.mit.edu	37	17	72350426	72350426	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:72350426C>A	uc002jkm.3	+	18	2572	c.2434C>A	c.(2434-2436)CTG>ATG	p.L812M		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	812					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CAGCCTGTCCCTGCACTCACT	0.711			NA											27	32					7.38237e-10	9.3161e-10	0.00632	1	0
OTOP3	347741	broad.mit.edu	37	17	72937670	72937670	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:72937670G>C	uc010wrr.1	+	2	256	c.256G>C	c.(256-258)GCT>CCT	p.A86P	OTOP3_uc010wrq.1_Missense_Mutation_p.A68P	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	86						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					GGCCCAGAAGGCTGGACAACT	0.662			NA											10	17					0	0	0.008291	0	0
CCDC40	55036	broad.mit.edu	37	17	78013808	78013808	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:78013808T>C	uc010dht.2	+	3	318	c.291T>C	c.(289-291)TAT>TAC	p.Y97Y	CCDC40_uc010wub.1_Silent_p.Y97Y	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	97					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AATATTACTATACAGAAACTT	0.348			NA											5	72					0	0	0.000602	0	0
RNF213	57674	broad.mit.edu	37	17	78357710	78357710	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:78357710C>G	uc002jyh.1	+	34	8746	c.8523C>G	c.(8521-8523)CTC>CTG	p.L2841L	uc002jyi.1_Intron|RNF213_uc010dhx.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TGCCCATCCTCTGGCATTTCC	0.502			NA											58	69					0	0	0.00361	0	0
BAIAP2	10458	broad.mit.edu	37	17	79090043	79090043	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:79090043G>A	uc002jzg.2	+	15	1705	c.1597G>A	c.(1597-1599)GCC>ACC	p.A533T	BAIAP2_uc002jzd.2_3'UTR|BAIAP2_uc002jzf.2_3'UTR|BAIAP2_uc002jze.2_3'UTR|BAIAP2_uc010wuh.1_3'UTR|BAIAP2_uc002jzh.2_3'UTR	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	533					axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			TGATCTGTCCGCCCAAGGGCC	0.632			NA											44	50					0	0	0.00361	0	0
SMCHD1	23347	broad.mit.edu	37	18	2750424	2750424	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:2750424C>T	uc002klm.3	+	32	4273	c.4084C>T	c.(4084-4086)CTT>TTT	p.L1362F	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1362					chromosome organization		ATP binding				0						GTTAATGATTCTTCCAGACCC	0.383			NA											27	25					0	0	0.004656	0	0
SMCHD1	23347	broad.mit.edu	37	18	2751313	2751313	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:2751313C>T	uc002klm.3	+	33	4392	c.4203C>T	c.(4201-4203)ATC>ATT	p.I1401I	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1401					chromosome organization		ATP binding				0						ATGACAGTATCATTAAAAACA	0.338			NA											11	36					0	0	0.008291	0	0
LPIN2	9663	broad.mit.edu	37	18	2923837	2923837	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:2923837G>A	uc002klo.2	-	16	2349	c.2110C>T	c.(2110-2112)CTC>TTC	p.L704F		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	704	LXXIL motif.|C-LIP.				fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		AGCTGTGGGAGAATCTGTCCC	0.483			NA											53	93					0	0	0.00361	0	0
EPB41L3	23136	broad.mit.edu	37	18	5394781	5394781	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:5394781C>G	uc002kmt.1	-	22	3251	c.3165G>C	c.(3163-3165)CAG>CAC	p.Q1055H	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Missense_Mutation_p.Q833H|EPB41L3_uc010dkq.1_Missense_Mutation_p.Q724H|EPB41L3_uc002kms.1_Missense_Mutation_p.Q290H|EPB41L3_uc010wze.1_Missense_Mutation_p.Q360H|EPB41L3_uc010wzf.1_Missense_Mutation_p.Q352H|EPB41L3_uc010wzg.1_Missense_Mutation_p.Q327H|EPB41L3_uc010dkr.2_Missense_Mutation_p.Q447H	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	1055	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CTTTAATTGCCTGAGCCAGCG	0.493			NA											4	159					0	0	0.009096	0	0
KIAA0802	23255	broad.mit.edu	37	18	8783844	8783844	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:8783844A>T	uc002knr.2	+	6	876	c.734A>T	c.(733-735)CAG>CTG	p.Q245L	KIAA0802_uc002knq.2_Missense_Mutation_p.Q245L|KIAA0802_uc010dkw.1_Missense_Mutation_p.Q83L	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	596	Potential.										0						ATGCGGGGCCAGCAGGAGCGG	0.657			NA											32	36					0	0	0.003755	0	0
RNMT	8731	broad.mit.edu	37	18	13734586	13734586	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:13734586A>T	uc002ksk.1	+	3	608	c.541A>T	c.(541-543)AGT>TGT	p.S181C	RNMT_uc002ksl.1_Missense_Mutation_p.S181C|RNMT_uc002ksm.1_Missense_Mutation_p.S181C|RNMT_uc010dlk.2_Missense_Mutation_p.S181C|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	181					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						TTGGATGAAAAGTGTTCTCAT	0.353	GBM(29;474 594 19092 36647 41529)		NA											20	96					0	0	0.008871	0	0
AQP4	361	broad.mit.edu	37	18	24445623	24445623	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:24445623C>T	uc002kwa.2	-	1	94	c.31G>A	c.(31-33)GGT>AGT	p.G11S	C18orf16_uc002kwb.2_Intron|C18orf16_uc010xbm.1_Intron	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	11	Cytoplasmic (Potential).				cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					AGGACTTACCCCCACCGCCTT	0.517			NA											37	137					0	0	0.00874	0	0
DSG3	1830	broad.mit.edu	37	18	29052319	29052319	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:29052319C>A	uc002kws.2	+	13	2079	c.1970C>A	c.(1969-1971)CCA>CAA	p.P657Q	DSG3_uc002kwt.2_5'Flank	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	657	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGTTTTATCCCAGTTCCTGAT	0.458			NA											32	57					2.81731e-10	3.58642e-10	0.002096	1	0
CELF4	56853	broad.mit.edu	37	18	34854794	34854794	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:34854794C>G	uc002lae.2	-	5	1027	c.631G>C	c.(631-633)GCG>CCG	p.A211P	CELF4_uc010dnd.1_Missense_Mutation_p.A210P|CELF4_uc002lag.2_Missense_Mutation_p.A201P|CELF4_uc002laf.2_Missense_Mutation_p.A206P|CELF4_uc002lai.2_Missense_Mutation_p.A196P|CELF4_uc002lah.1_5'Flank|CELF4_uc002laj.1_5'Flank	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	211	Sufficient for RNA-binding and MSE- dependent splicing activity.|RRM 2.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						CCGTGTAGCGCGTTGATGGCG	0.741			NA											3	6					0	0	0.009096	0	0
CELF4	56853	broad.mit.edu	37	18	34855077	34855077	+	Splice_Site	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:34855077C>A	uc002lae.2	-	4	973	c.577_splice	c.e4+1	p.G193_splice	CELF4_uc010dnd.1_Splice_Site_p.G192_splice|CELF4_uc002lag.2_Splice_Site_p.G183_splice|CELF4_uc002laf.2_Splice_Site_p.G188_splice|CELF4_uc002lai.2_Splice_Site_p.G178_splice|CELF4_uc002lah.1_5'Flank|CELF4_uc002laj.1_5'Flank	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1						embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						GCCCCGCGCACCCTTGCTGTT	0.697			NA											5	60					0.000602214	0.000653961	0.000602	1	0
MYO5B	4645	broad.mit.edu	37	18	47429071	47429071	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:47429071C>T	uc002leb.2	-	21	2992	c.2704G>A	c.(2704-2706)GAG>AAG	p.E902K	MYO5B_uc002lea.2_Missense_Mutation_p.E43K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	902	Potential.|IQ 6.|Arg-rich.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GCCTTCAGCTCCCGCCTGGCC	0.622			NA											15	37					0	0	0.003163	0	0
MAPK4	5596	broad.mit.edu	37	18	48252469	48252469	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:48252469G>T	uc002lev.2	+	5	1991	c.991G>T	c.(991-993)GAG>TAG	p.E331*	MAPK4_uc010xdm.1_Nonsense_Mutation_p.E120*|MAPK4_uc010doz.2_Intron	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	331					cell cycle		ATP binding|MAP kinase activity	p.E331D(1)		lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CTTCCGCATTGAGGATGAGAT	0.597			NA											5	58					0.000602214	0.000653961	0.000602	1	0
MAPK4	5596	broad.mit.edu	37	18	48252472	48252472	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:48252472G>T	uc002lev.2	+	5	1994	c.994G>T	c.(994-996)GAT>TAT	p.D332Y	MAPK4_uc010xdm.1_Missense_Mutation_p.D121Y|MAPK4_uc010doz.2_Intron	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	332					cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CCGCATTGAGGATGAGATCGA	0.607			NA											6	55					0.00116845	0.00125944	0.001168	1	0
MBP	4155	broad.mit.edu	37	18	74701954	74701954	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr18:74701954C>A	uc010xfd.1	-	5	903	c.639G>T	c.(637-639)CGG>CGT	p.R213R	MBP_uc002lml.2_Silent_p.R106R|MBP_uc002lmn.2_Silent_p.R106R|MBP_uc002lmp.2_Silent_p.R80R|MBP_uc010xfe.1_Silent_p.R80R|MBP_uc010dqz.2_5'Flank	NM_001025101	NP_001020272	P02686	MBP_HUMAN	Golli-mbp isoform 1	213	Induces experimental autoimmune encephalomyelitis (EAE) 1.				central nervous system development|immune response|synaptic transmission	plasma membrane	structural constituent of myelin sheath			haematopoietic_and_lymphoid_tissue(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.79e-06)|BRCA - Breast invasive adenocarcinoma(31;0.113)|READ - Rectum adenocarcinoma(1;0.188)		CATCTTGGGTCCGGCCGTGTG	0.577	NSCLC(17;72 1131 19392)		NA											19	69					2.94398e-08	3.57542e-08	0.007413	1	0
MADCAM1	8174	broad.mit.edu	37	19	498565	498565	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:498565C>G	uc002los.2	+	3	417	c.407C>G	c.(406-408)GCC>GGC	p.A136G	MADCAM1_uc002lot.2_Missense_Mutation_p.A136G|MADCAM1_uc010drq.2_Missense_Mutation_p.A41G	NM_130760	NP_570116	Q13477	MADCA_HUMAN	mucosal vascular addressin cell adhesion	136	Extracellular (Potential).|Ig-like 2.				cell adhesion|immune response|regulation of immune response|signal transduction	integral to membrane|membrane fraction|plasma membrane					0		all_cancers(10;4.25e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTGTACGGCCCACAAAGTC	0.706			NA											5	9					0	0	0.000602	0	0
MADCAM1	8174	broad.mit.edu	37	19	498569	498569	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:498569C>A	uc002los.2	+	3	421	c.411C>A	c.(409-411)CAC>CAA	p.H137Q	MADCAM1_uc002lot.2_Missense_Mutation_p.H137Q|MADCAM1_uc010drq.2_Missense_Mutation_p.H42Q	NM_130760	NP_570116	Q13477	MADCA_HUMAN	mucosal vascular addressin cell adhesion	137	Extracellular (Potential).|Ig-like 2.				cell adhesion|immune response|regulation of immune response|signal transduction	integral to membrane|membrane fraction|plasma membrane					0		all_cancers(10;4.25e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTACGGCCCACAAAGTCACGC	0.711			NA											4	9					0.00909568	0.00956747	0.009096	1	0
BSG	682	broad.mit.edu	37	19	581345	581345	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:581345T>G	uc002loz.2	+	6	921	c.823T>G	c.(823-825)TTC>GTC	p.F275V	BSG_uc002loy.2_Missense_Mutation_p.F95V|BSG_uc002lpa.2_Missense_Mutation_p.F159V|BSG_uc002lpb.2_RNA|BSG_uc010drr.2_Missense_Mutation_p.F159V|BSG_uc002lpc.2_Missense_Mutation_p.F322V|BSG_uc002lpd.2_5'Flank	NM_001728	NP_001719	P35613	BASI_HUMAN	basigin isoform 1 precursor	275	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell surface receptor linked signaling pathway|leukocyte migration|pyruvate metabolic process	Golgi membrane|integral to membrane|melanosome	lactate transmembrane transporter activity|mannose binding|protein binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCAGGTTCTTCGTGAGTTC	0.637			NA											8	56					0	0	0.004482	0	0
ABCA7	10347	broad.mit.edu	37	19	1049420	1049420	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:1049420G>T	uc002lqw.3	+	18	2767	c.2536G>T	c.(2536-2538)GGC>TGC	p.G846C	ABCA7_uc010dsb.1_Missense_Mutation_p.G708C	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	846	ATP 1 (Potential).|ABC transporter 1.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAACGGGGCCGGCAAGACCAC	0.692			NA											11	24					3.07112e-06	3.54235e-06	0.000978	1	0
POLR2E	5434	broad.mit.edu	37	19	1091841	1091841	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:1091841T>A	uc002lre.3	-	3	375	c.298A>T	c.(298-300)ACA>TCA	p.T100S	POLR2E_uc010xgf.1_RNA	NM_002695	NP_002686	P19388	RPAB1_HUMAN	DNA directed RNA polymerase II polypeptide E	100					interspecies interaction between organisms|mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAGCCCGTGTGATGTTCTCC	0.652			NA											33	37					0	0	0.003271	0	0
ZNF556	80032	broad.mit.edu	37	19	2878065	2878065	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:2878065A>G	uc002lwp.1	+	4	1196	c.1109A>G	c.(1108-1110)TAT>TGT	p.Y370C	ZNF556_uc002lwq.2_Missense_Mutation_p.Y369C	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	370	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGAAAGTCTATAAATGTGAA	0.478			NA											13	22					0	0	0.001368	0	0
PLIN4	729359	broad.mit.edu	37	19	4511819	4511819	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:4511819C>G	uc002mar.1	-	3	2111	c.2111G>C	c.(2110-2112)AGT>ACT	p.S704T	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	704	19.|27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane					0						GGTGTCCACACTGGTCTGGAC	0.607			NA											4	377					0	0	0.000602	0	0
PLIN4	729359	broad.mit.edu	37	19	4517573	4517573	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:4517573C>T	uc002mar.1	-	1	144	c.144G>A	c.(142-144)CAG>CAA	p.Q48Q		NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	48						lipid particle|plasma membrane					0						CACCCTGAGCCTGTGGTTGGG	0.701			NA											7	10					0	0	0.001984	0	0
INSR	3643	broad.mit.edu	37	19	7184418	7184418	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:7184418T>A	uc002mgd.1	-	3	992	c.883A>T	c.(883-885)AAC>TAC	p.N295Y	INSR_uc002mge.1_Missense_Mutation_p.N295Y|INSR_uc002mgf.2_Missense_Mutation_p.N295Y	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	295	Cys-rich.				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTCCGCGAGTTCTTGCATTTG	0.577			NA											18	24					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9062533	9062533	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:9062533C>A	uc002mkp.2	-	3	25117	c.24913G>T	c.(24913-24915)GTG>TTG	p.V8305L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8307	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGTTATCACCAGGCCAGGG	0.502			NA											35	57					6.90743e-12	9.05756e-12	0.003755	1	0
OR7G1	125962	broad.mit.edu	37	19	9226066	9226066	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:9226066G>T	uc002mks.1	-	1	374	c.374C>A	c.(373-375)GCC>GAC	p.A125D		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						GTGGCAAATGGCCACATAGCG	0.498			NA											37	51					9.17885e-22	1.35891e-21	0.003271	1	0
ZNF560	147741	broad.mit.edu	37	19	9581105	9581105	+	Silent	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:9581105A>G	uc002mlp.1	-	7	621	c.411T>C	c.(409-411)GAT>GAC	p.D137D	ZNF560_uc010dwr.1_Silent_p.D31D	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	137	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CCAGCATCACATCACTGTACA	0.458			NA											34	53					0	0	0.004289	0	0
EMR2	30817	broad.mit.edu	37	19	14877104	14877104	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:14877104G>T	uc002mzp.1	-	7	1033	c.577C>A	c.(577-579)CCG>ACG	p.P193T	EMR2_uc010dzs.1_5'Flank|EMR2_uc010xnw.1_Missense_Mutation_p.P193T|EMR2_uc002mzo.1_Missense_Mutation_p.P193T|EMR2_uc002mzq.1_Intron|EMR2_uc002mzr.1_Intron|EMR2_uc002mzs.1_Intron|EMR2_uc002mzt.1_Intron|EMR2_uc002mzu.1_Intron|EMR2_uc010xnx.1_Intron|EMR2_uc010xny.1_Intron	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	193	EGF-like 4; calcium-binding (Potential).|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						TGCCAGCCCGGGCGGCAGCGG	0.582			NA											54	76					9.59449e-18	1.36483e-17	0.00361	1	0
WIZ	58525	broad.mit.edu	37	19	15535040	15535040	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:15535040T>C	uc002nbc.2	-	7	2724	c.2701A>G	c.(2701-2703)ACA>GCA	p.T901A	WIZ_uc002nba.3_Missense_Mutation_p.T768A|WIZ_uc002nbb.3_Missense_Mutation_p.T727A	NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	1584						nucleus	zinc ion binding				0						ACAAGTGATGTCTGGGGGGGC	0.647			NA											3	10					0	0	0.009096	0	0
CYP4F3	4051	broad.mit.edu	37	19	15769135	15769135	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:15769135C>T	uc002nbj.2	+	10	1227	c.1177C>T	c.(1177-1179)CCC>TCC	p.P393S	CYP4F3_uc010xok.1_Missense_Mutation_p.P393S|CYP4F3_uc010xol.1_Missense_Mutation_p.P393S|CYP4F3_uc010xom.1_Missense_Mutation_p.P244S|CYP4F3_uc002nbk.2_Missense_Mutation_p.P393S|CYP4F3_uc010xon.1_Missense_Mutation_p.P103S	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	393					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GAGGCTGCATCCCCCAGTCCC	0.627			NA											4	100					0	0	0.009096	0	0
FAM129C	199786	broad.mit.edu	37	19	17654231	17654231	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:17654231C>T	uc010xpr.1	+	12	1666	c.1528C>T	c.(1528-1530)CGC>TGC	p.R510C	FAM129C_uc010xpq.1_Missense_Mutation_p.R510C|FAM129C_uc002ngy.3_Missense_Mutation_p.R236C|FAM129C_uc010xpu.1_Missense_Mutation_p.R236C|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Missense_Mutation_p.R236C|FAM129C_uc002nhb.2_Missense_Mutation_p.R109C	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	510											0						AGTCAGGGGGCGCGTGCTGAA	0.657			NA											46	56					0	0	0.00361	0	0
SF4	57794	broad.mit.edu	37	19	19427361	19427361	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:19427361C>A	uc002nmh.2	-	2	78	c.76G>T	c.(76-78)GGA>TGA	p.G26*	SF4_uc002nmi.2_5'UTR|SF4_uc002nmj.2_5'UTR|SF4_uc010xqr.1_RNA|SF4_uc010xqs.1_RNA	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	26					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						TTCATTTTTCCAGATTTAGGG	0.483			NA											12	39					1.08611e-07	1.29383e-07	0.000978	1	0
C19orf2	8725	broad.mit.edu	37	19	30476162	30476162	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:30476162G>A	uc002nsr.2	+	3	215	c.185G>A	c.(184-186)CGA>CAA	p.R62Q	C19orf2_uc002nsq.2_Missense_Mutation_p.R44Q|C19orf2_uc002nss.2_Missense_Mutation_p.R22Q|C19orf2_uc002nst.2_5'UTR	NM_003796	NP_003787	O94763	RMP_HUMAN	RPB5-mediating protein isoform a	62					protein folding|regulation of transcription from RNA polymerase II promoter|response to virus	DNA-directed RNA polymerase II, core complex|prefoldin complex	transcription corepressor activity|unfolded protein binding			ovary(1)|kidney(1)	2	Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)	Hepatocellular(1079;0.137)|Renal(1328;0.228)	STAD - Stomach adenocarcinoma(5;5.36e-06)|Lung(7;0.0144)|LUAD - Lung adenocarcinoma(5;0.115)	STAD - Stomach adenocarcinoma(1328;0.18)		AATGCCCTTCGAGAAAGACTC	0.269	Melanoma(75;661 1306 1472 28422 37948)		NA											14	180					0	0	0.00499	0	0
SLC7A9	11136	broad.mit.edu	37	19	33355539	33355539	+	Silent	SNP	C	C	T	rs141456885		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:33355539C>T	uc002ntv.3	-	3	348	c.231G>A	c.(229-231)ACG>ACA	p.T77T	SLC7A9_uc002ntt.3_Intron|SLC7A9_uc002ntu.3_Silent_p.T77T|SLC7A9_uc002ntw.3_Intron	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	77	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	CTTTACCCAGCGTCGCGAGGA	0.632	GBM(181;1335 2108 9644 44178 46689)		NA											74	32					0	0	0.00361	0	0
CCDC123	84902	broad.mit.edu	37	19	33424517	33424517	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:33424517T>A	uc002nty.2	-	8	815	c.726A>T	c.(724-726)GCA>GCT	p.A242A	CCDC123_uc002ntx.2_5'UTR|CCDC123_uc010edg.2_RNA|CCDC123_uc002ntz.1_Silent_p.A242A|CCDC123_uc002nua.2_Silent_p.A242A	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	242	Potential.					centrosome|spindle pole					0	Esophageal squamous(110;0.137)					CTTCTTTTAATGCCTCAAACT	0.318			NA											9	179					0	0	0.004482	0	0
ZNF181	339318	broad.mit.edu	37	19	35232200	35232200	+	Missense_Mutation	SNP	T	T	G	rs143797666		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:35232200T>G	uc002nvu.3	+	4	1377	c.914T>G	c.(913-915)GTC>GGC	p.V305G	ZNF181_uc010xsa.1_Missense_Mutation_p.V304G|ZNF181_uc010xsb.1_Missense_Mutation_p.V304G|ZNF181_uc010xsc.1_Missense_Mutation_p.V240G	NM_001029997	NP_001025168	Q2M3W8	ZN181_HUMAN	zinc finger protein 181 isoform 1	305	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TTTAGCCATGTCTCATCACTT	0.413			NA											3	123					0	0	0.001168	0	0
NPHS1	4868	broad.mit.edu	37	19	36330257	36330257	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:36330257G>A	uc002oby.2	-	22	2991	c.2991C>T	c.(2989-2991)ACC>ACT	p.T997T	NPHS1_uc010eem.1_RNA	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	997	Fibronectin type-III.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCAGCGTGAAGGTGGTGGCCT	0.582			NA											8	101					0	0	0.006214	0	0
WDR62	284403	broad.mit.edu	37	19	36557325	36557325	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:36557325G>T	uc002odc.2	+	5	648	c.557G>T	c.(556-558)TGG>TTG	p.W186L	WDR62_uc002odd.2_Missense_Mutation_p.W186L|WDR62_uc002odb.2_Missense_Mutation_p.W186L	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	186	WD 2.				cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GTCTGGGACTGGAAGGTAAGA	0.567			NA											8	1					5.18039e-06	5.95165e-06	0.00308	1	0
PAF1	54623	broad.mit.edu	37	19	39876663	39876663	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:39876663C>T	uc002old.2	-	14	1739	c.1564G>A	c.(1564-1566)GAT>AAT	p.D522N	PAF1_uc002ole.1_Silent_p.L450L	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	522					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			TCACTGGAATCAGAAGCTGCA	0.592			NA											9	51					0	0	0.008291	0	0
CEACAM5	1048	broad.mit.edu	37	19	42213867	42213867	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:42213867C>T	uc002ork.2	+	2	454	c.333C>T	c.(331-333)AAC>AAT	p.N111N	CEACAM5_uc010ehz.1_Silent_p.N111N|CEACAM5_uc002orj.1_Silent_p.N111N|CEACAM5_uc002orl.2_Silent_p.N111N	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	111	Ig-like 1.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TGATCCAGAACATCATCCAGA	0.453			NA											24	290					0	0	0.003954	0	0
KCNN4	3783	broad.mit.edu	37	19	44273904	44273904	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:44273904G>T	uc002oxl.2	-	5	1293	c.897C>A	c.(895-897)CAC>CAA	p.H299Q	KCNN4_uc010eiz.2_Missense_Mutation_p.H212Q	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	299	Calmodulin-binding.				defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	TCATGAAGTTGTGCACGTGCT	0.512			NA											46	61					6.27289e-28	9.57962e-28	0.00361	1	0
ZNF223	7766	broad.mit.edu	37	19	44564659	44564659	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:44564659G>T	uc002oyf.1	+	3	320	c.67G>T	c.(67-69)GGG>TGG	p.G23W	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	23	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				GGAGGAGCTGGGGCTGCTGGA	0.517			NA											84	123					2.35699e-46	3.77811e-46	0.00361	1	0
GIPR	2696	broad.mit.edu	37	19	46173932	46173932	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:46173932C>A	uc002pcu.1	+	3	211	c.112C>A	c.(112-114)CGC>AGC	p.R38S	GIPR_uc002pct.1_Missense_Mutation_p.R38S|GIPR_uc010xxp.1_Missense_Mutation_p.R38S|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	38	Extracellular (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		GCTGTACCAGCGCTGGGAACG	0.677			NA											18	18					1.56452e-12	2.07335e-12	0.007413	1	0
SYMPK	8189	broad.mit.edu	37	19	46345558	46345558	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:46345558C>A	uc002pdn.2	-	9	1282	c.1037G>T	c.(1036-1038)CGC>CTC	p.R346L	SYMPK_uc002pdo.1_Missense_Mutation_p.R346L|SYMPK_uc002pdp.1_Missense_Mutation_p.R346L|SYMPK_uc002pdq.1_Missense_Mutation_p.R346L	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	346	Nuclear localization signal (Potential).				cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		GGGCCGCTTGCGGGTGTCCTT	0.627			NA											35	42					4.65686e-17	6.6029e-17	0.003755	1	0
HIF3A	64344	broad.mit.edu	37	19	46808501	46808501	+	Splice_Site	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:46808501G>A	uc002peh.2	+	3	247	c.218_splice	c.e3-1	p.G73_splice	HIF3A_uc002pef.1_Splice_Site_p.G73_splice|HIF3A_uc002peg.3_Splice_Site_p.G73_splice|HIF3A_uc010xxx.1_Splice_Site|HIF3A_uc002pei.3_Splice_Site_p.G17_splice|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Splice_Site_p.G17_splice|HIF3A_uc010xxy.1_Intron|HIF3A_uc002pel.2_Splice_Site_p.G71_splice|HIF3A_uc010xxz.1_Intron	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		CCGGGCACCAGGGGAGTGGAA	0.612			NA											34	48					0	0	0.003271	0	0
GLTSCR1	29998	broad.mit.edu	37	19	48205578	48205578	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:48205578G>A	uc002phh.3	+	15	4783	c.4589G>A	c.(4588-4590)GGC>GAC	p.G1530D	GLTSCR1_uc002phi.3_Missense_Mutation_p.G1288D	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	1530							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		GCCTCGGCCGGCACCCCCGCA	0.726			NA											8	7					0	0	0.00308	0	0
CCDC155	147872	broad.mit.edu	37	19	49898410	49898410	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:49898410G>A	uc002pnm.1	+	4	370	c.196G>A	c.(196-198)GGC>AGC	p.G66S	CCDC155_uc002pnl.1_Missense_Mutation_p.G66S|CCDC155_uc010emx.1_Missense_Mutation_p.G39S	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	66						integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						GGCTGTGACAGGCCAGGGCCC	0.637			NA											12	21					0	0	0.001368	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918205	51918205	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:51918205G>T	uc002pwo.2	-	8	2104	c.1488C>A	c.(1486-1488)CCC>CCA	p.P496P	SIGLEC10_uc002pwp.2_Silent_p.P438P|SIGLEC10_uc002pwq.2_Intron|SIGLEC10_uc002pwr.2_Intron|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Intron|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	496	Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CGGCTGAGCTGGGGGTGACCT	0.711			NA											19	22					1.45105e-14	1.97706e-14	0.006122	1	0
SIGLEC8	27181	broad.mit.edu	37	19	51958820	51958820	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:51958820G>T	uc002pwt.2	-	4	970	c.903C>A	c.(901-903)ACC>ACA	p.T301T	SIGLEC8_uc010yda.1_Silent_p.T192T|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Silent_p.T208T	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	301	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		AGGGGCACAGGGTCAGGCTCC	0.632			NA											28	25					2.12542e-12	2.79964e-12	0.00632	1	0
BIRC8	112401	broad.mit.edu	37	19	53793627	53793627	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:53793627T>C	uc002qbk.2	-	1	1249	c.1A>G	c.(1-3)ATG>GTG	p.M1V		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	1					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		TAACCCGTCATGGATGGATTC	0.418			NA											27	44					0	0	0.00632	0	0
LILRB5	10990	broad.mit.edu	37	19	54760611	54760611	+	Nonsense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:54760611C>T	uc002qex.2	-	3	207	c.96G>A	c.(94-96)TGG>TGA	p.W32*	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Nonsense_Mutation_p.W32*|LILRB5_uc002qey.2_Nonsense_Mutation_p.W32*|LILRB5_uc002qez.2_Nonsense_Mutation_p.W32*|LILRB5_uc002qfa.1_Nonsense_Mutation_p.W22*|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	32	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTGGCTCAGCCCAGAGGGTGG	0.622			NA											45	34					0	0	0.002522	0	0
LILRB1	10859	broad.mit.edu	37	19	55143585	55143585	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:55143585C>T	uc002qgj.2	+	6	898	c.558C>T	c.(556-558)CCC>CCT	p.P186P	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.P186P|LILRB1_uc002qgk.2_Silent_p.P186P|LILRB1_uc002qgm.2_Silent_p.P186P|LILRB1_uc010erq.2_Silent_p.P186P|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	186	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCGTGGGCCCCGTGAGCCCGA	0.592			NA								HNSCC(37;0.09)			59	82					0	0	0.00361	0	0
NCR1	9437	broad.mit.edu	37	19	55417575	55417575	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:55417575C>T	uc002qib.2	+	1	68	c.30C>T	c.(28-30)TGC>TGT	p.C10C	NCR1_uc002qic.2_Silent_p.C10C|NCR1_uc002qie.2_Silent_p.C10C|NCR1_uc002qid.2_Silent_p.C10C|NCR1_uc002qif.2_Silent_p.C10C|NCR1_uc010esj.2_Silent_p.C10C	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	10					cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		CCCTGCTCTGCGTCGGTGAGT	0.607			NA											30	38					0	0	0.002836	0	0
NLRP11	204801	broad.mit.edu	37	19	56319360	56319360	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:56319360T>C	uc010ygf.1	-	6	2573	c.1862A>G	c.(1861-1863)TAC>TGC	p.Y621C	NLRP11_uc002qlz.2_Intron|NLRP11_uc002qmb.2_Missense_Mutation_p.Y522C|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	621							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CTCTCTCCAGTAGACAAGGCT	0.363			NA											44	31					0	0	0.003214	0	0
NLRP4	147945	broad.mit.edu	37	19	56379097	56379098	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:56379097_56379098CC>AA	uc002qmd.3	+	6	2631_2632	c.2209_2210CC>AA	c.(2209-2211)CCC>AAC	p.P737N	NLRP4_uc002qmf.2_Missense_Mutation_p.P662N|NLRP4_uc010etf.2_Intron	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	737	LRR 3.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TCACCTCTCACCCATTGATTGT	0.47			NA											24	62					0	0	0.004672	0	0
NLRP13	126204	broad.mit.edu	37	19	56419176	56419176	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:56419176C>T	uc010ygg.1	-	7	2454	c.2429G>A	c.(2428-2430)TGC>TAC	p.C810Y		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	810							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CTTGAGGTTGCAAGCTGAGTG	0.517			NA											56	57					0	0	0.00361	0	0
ZNF667	63934	broad.mit.edu	37	19	56953189	56953189	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:56953189T>C	uc002qnd.2	-	5	1337	c.1175A>G	c.(1174-1176)GAG>GGG	p.E392G	ZNF667_uc010etl.2_Missense_Mutation_p.E174G|ZNF667_uc002qne.2_Missense_Mutation_p.E392G|ZNF667_uc010etm.2_Missense_Mutation_p.E335G	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	392	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		GCAGACCTTCTCACATTTATT	0.348			NA											6	51					0	0	0.001168	0	0
PEG3	5178	broad.mit.edu	37	19	57328349	57328349	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:57328349G>C	uc002qnu.2	-	7	1812	c.1461C>G	c.(1459-1461)ATC>ATG	p.I487M	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.I458M|PEG3_uc002qnv.2_Missense_Mutation_p.I487M|PEG3_uc002qnw.2_Missense_Mutation_p.I363M|PEG3_uc002qnx.2_Missense_Mutation_p.I361M|PEG3_uc010etr.2_Missense_Mutation_p.I487M	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	487					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCACACTGTGGATAAAGGACT	0.463			NA											22	134					0	0	0.002299	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58551818	58551818	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr19:58551818T>C	uc002qrc.1	+	4	618	c.371T>C	c.(370-372)GTT>GCT	p.V124A		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	124					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		TCCCGCACAGTTCTGGTATCT	0.587			NA											20	133					0	0	0.010504	0	0
PXDN	7837	broad.mit.edu	37	2	1652063	1652063	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:1652063C>G	uc002qxa.2	-	17	3553	c.3489G>C	c.(3487-3489)CGG>CGC	p.R1163R		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1163					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TCCCGTGGTCCCGGCCCCGCT	0.597			NA											39	133					0	0	0.004878	0	0
PXDN	7837	broad.mit.edu	37	2	1653374	1653374	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:1653374G>T	uc002qxa.2	-	17	2242	c.2178C>A	c.(2176-2178)CAC>CAA	p.H726Q		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	726					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TCACGCGCCGGTGGGCGGTAC	0.602			NA											28	76					2.4375e-19	3.51904e-19	0.007291	1	0
SOX11	6664	broad.mit.edu	37	2	5833567	5833567	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:5833567G>C	uc002qyj.2	+	1	769	c.714G>C	c.(712-714)CAG>CAC	p.Q238H		NM_003108	NP_003099	P35716	SOX11_HUMAN	SRY-box 11	238					cardiac ventricle formation|closure of optic fissure|cornea development in camera-type eye|embryonic digestive tract morphogenesis|embryonic skeletal system morphogenesis|eyelid development in camera-type eye|glial cell proliferation|hard palate development|lens morphogenesis in camera-type eye|limb bud formation|lung morphogenesis|negative regulation of cell death|negative regulation of glial cell proliferation|negative regulation of lymphocyte proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|neural crest cell development|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|outflow tract morphogenesis|positive regulation of BMP signaling pathway|positive regulation of hippo signaling cascade|positive regulation of hormone secretion|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of ossification|positive regulation of osteoblast differentiation|positive regulation of stem cell proliferation|regulation of transforming growth factor beta receptor signaling pathway|signal transduction involved in G1/S transition checkpoint|soft palate development|somite development|spinal cord development|sympathetic nervous system development|ventricular septum morphogenesis	cytoplasm|nucleolus	enhancer sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|translation factor activity, nucleic acid binding			central_nervous_system(3)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			OV - Ovarian serous cystadenocarcinoma(76;0.132)		TGCAGCTGCAGATCAAACAGG	0.582			NA											6	18					0	0	0.001168	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697591	17697591	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:17697591C>T	uc002rcl.1	-	1	2116	c.2092G>A	c.(2092-2094)GAT>AAT	p.D698N	RAD51AP2_uc010exn.1_Missense_Mutation_p.D689N	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	698										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAAATTTCATCCATGTCATCA	0.308			NA											16	70					0	0	0.003163	0	0
CAD	790	broad.mit.edu	37	2	27446491	27446491	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:27446491G>A	uc002rji.2	+	7	1032	c.870G>A	c.(868-870)CTG>CTA	p.L290L	CAD_uc010eyw.2_Silent_p.L290L	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	290	Glutamine amidotransferase type-1.|GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GCTGCTTTCTGACATCCCAGA	0.567			NA											13	270					0	0	0.001368	0	0
ALK	238	broad.mit.edu	37	2	29551274	29551274	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:29551274C>G	uc002rmy.2	-	6	2263	c.1356G>C	c.(1354-1356)GGG>GGC	p.G452G		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	452	LDL-receptor class A.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CACAGGCCTGCCCAAGCTGGA	0.602			NA	T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				9	65					0	0	0.006214	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656505	40656505	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:40656505C>A	uc002rrx.2	-	1	940	c.916G>T	c.(916-918)GGT>TGT	p.G306C	SLC8A1_uc002rry.2_Missense_Mutation_p.G306C|SLC8A1_uc002rrz.2_Missense_Mutation_p.G306C|SLC8A1_uc002rsa.2_Missense_Mutation_p.G306C|SLC8A1_uc002rsd.3_Missense_Mutation_p.G306C|SLC8A1_uc002rsb.1_Missense_Mutation_p.G306C|SLC8A1_uc010fan.1_Missense_Mutation_p.G306C|SLC8A1_uc002rsc.1_Missense_Mutation_p.G306C	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	306	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ACCAGAGCACCATCTAAGAAA	0.438			NA											67	197					6.05568e-20	8.78628e-20	0.00361	1	0
SRBD1	55133	broad.mit.edu	37	2	45829073	45829073	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:45829073C>A	uc002rus.2	-	3	306	c.230G>T	c.(229-231)GGC>GTC	p.G77V		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	77					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			GACTTCTGAGCCATCACTGAT	0.478			NA											66	186					7.1157e-29	1.09821e-28	0.00361	1	0
FSHR	2492	broad.mit.edu	37	2	49190767	49190767	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:49190767C>A	uc002rww.2	-	10	1267	c.1193G>T	c.(1192-1194)AGG>ATG	p.R398M	FSHR_uc002rwx.2_Missense_Mutation_p.R336M|FSHR_uc010fbn.2_Missense_Mutation_p.R372M	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	398	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CATAAGGAACCTGGGGACTGT	0.458			NA							Gonadal_Dysgenesis_46_XX				20	52					4.96729e-08	5.9827e-08	0.008871	1	0
NRXN1	9378	broad.mit.edu	37	2	50724546	50724546	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:50724546G>T	uc010fbq.2	-	14	4401	c.2924C>A	c.(2923-2925)ACA>AAA	p.T975K	NRXN1_uc002rxb.3_Missense_Mutation_p.T607K|NRXN1_uc002rxe.3_Missense_Mutation_p.T935K|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TAGGGATGTTGTCTTGAACTG	0.393			NA											29	45					1.77063e-15	2.45078e-15	0.005443	1	0
NRXN1	9378	broad.mit.edu	37	2	50847242	50847242	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:50847242A>G	uc010fbq.2	-	8	2835	c.1358T>C	c.(1357-1359)TTT>TCT	p.F453S	NRXN1_uc002rxb.3_Missense_Mutation_p.F85S|NRXN1_uc002rxe.3_Missense_Mutation_p.F413S|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			AACATAGAAAAAGTCATCAGA	0.473			NA											10	33					0	0	0.008291	0	0
VRK2	7444	broad.mit.edu	37	2	58366863	58366863	+	Nonsense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:58366863C>T	uc002rzo.2	+	14	1664	c.919C>T	c.(919-921)CAA>TAA	p.Q307*	VRK2_uc010fcb.2_Nonsense_Mutation_p.Q307*|VRK2_uc002rzs.2_Nonsense_Mutation_p.Q307*|VRK2_uc002rzr.2_Nonsense_Mutation_p.Q307*|VRK2_uc010fcc.2_Nonsense_Mutation_p.Q189*|VRK2_uc002rzv.2_Nonsense_Mutation_p.Q307*|VRK2_uc010fcd.2_Nonsense_Mutation_p.Q284*|VRK2_uc002rzp.2_Nonsense_Mutation_p.Q307*|VRK2_uc010ypg.1_Nonsense_Mutation_p.Q307*|VRK2_uc002rzq.2_Nonsense_Mutation_p.Q307*|VRK2_uc002rzu.2_Nonsense_Mutation_p.Q307*|VRK2_uc002rzt.2_Nonsense_Mutation_p.Q189*	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	307	Protein kinase.					integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						GCCAAACTATCAAGCCCTCAA	0.348			NA											13	61					0	0	0.001368	0	0
BMP10	27302	broad.mit.edu	37	2	69098276	69098276	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:69098276G>T	uc002sez.1	-	1	374	c.215C>A	c.(214-216)CCC>CAC	p.P72H		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	72					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						ATCCTGCGTGGGGATGTCAGA	0.473			NA											69	125					5.00936e-31	7.80028e-31	0.00361	1	0
TIA1	7072	broad.mit.edu	37	2	70451749	70451749	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:70451749C>A	uc002sgj.3	-	7	628	c.411G>T	c.(409-411)GTG>GTT	p.V137V	TIA1_uc002sgk.3_Silent_p.V126V|TIA1_uc002sgl.3_RNA|TIA1_uc002sgm.3_Silent_p.V137V	NM_022173	NP_071505	P31483	TIA1_HUMAN	TIA1 cytotoxic granule-associated RNA binding	137	RRM 2.				apoptosis|induction of apoptosis|regulation of nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|poly(A) RNA binding|protein binding				0						TGTCTTTTACCACTCGGGCAT	0.388			NA											9	49					1.12685e-05	1.28446e-05	0.004482	1	0
ALMS1	7840	broad.mit.edu	37	2	73659341	73659341	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:73659341G>T	uc002sje.1	+	8	1468	c.1357G>T	c.(1357-1359)GAA>TAA	p.E453*	ALMS1_uc002sjf.1_Nonsense_Mutation_p.E410*	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	452					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AAGAGAGTCGGAATATCACTC	0.393			NA											22	74					1.50039e-11	1.94404e-11	0.001882	1	0
ALMS1	7840	broad.mit.edu	37	2	73679254	73679254	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:73679254A>G	uc002sje.1	+	10	5714	c.5603A>G	c.(5602-5604)GAT>GGT	p.D1868G	ALMS1_uc002sjf.1_Missense_Mutation_p.D1824G|ALMS1_uc002sjg.2_Missense_Mutation_p.D1254G|ALMS1_uc002sjh.1_Missense_Mutation_p.D1254G	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1866	29.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GAGTTGCCAGATCTTACTGAA	0.468			NA											23	77					0	0	0.001882	0	0
REG3A	5068	broad.mit.edu	37	2	79385781	79385781	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:79385781G>A	uc002sod.1	-	2	446	c.191C>T	c.(190-192)GCA>GTA	p.A64V	REG3A_uc002soe.1_Missense_Mutation_p.A64V|REG3A_uc002sof.1_Missense_Mutation_p.A64V	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	64	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						ACTCACATCTGCATCTGTCCA	0.537			NA											36	52					0	0	0.003755	0	0
CTNNA2	1496	broad.mit.edu	37	2	80101247	80101247	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:80101247G>T	uc010ysh.1	+	5	636	c.631G>T	c.(631-633)GGG>TGG	p.G211W	CTNNA2_uc010yse.1_Missense_Mutation_p.G211W|CTNNA2_uc010ysf.1_Missense_Mutation_p.G211W|CTNNA2_uc010ysg.1_Missense_Mutation_p.G211W	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	211					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AGCCGCCCGAGGGGCTCTGAA	0.507			NA											13	46					5.50884e-06	6.32067e-06	0.001368	1	0
LRRTM1	347730	broad.mit.edu	37	2	80529979	80529979	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:80529979C>G	uc002sok.1	-	2	1236	c.966G>C	c.(964-966)GTG>GTC	p.V322V	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	322	LRRCT.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						CTAGGGCACACACGTTGCGCC	0.637			NA								HNSCC(69;0.2)			8	21					0	0	0.00308	0	0
MAL	4118	broad.mit.edu	37	2	95713751	95713751	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:95713751C>T	uc002stx.1	+	2	200	c.141C>T	c.(139-141)CCC>CCT	p.P47P	MAL_uc002sty.1_Intron|MAL_uc002stz.1_Silent_p.P47P|MAL_uc002sua.1_Intron	NM_002371	NP_002362	P21145	MAL_HUMAN	T-lymphocyte maturation-associated protein	47	MARVEL.|Extracellular (Potential).				apical protein localization|cell differentiation|central nervous system development|induction of apoptosis|membrane raft polarization|myelination	apical plasma membrane|endoplasmic reticulum|endosome|integral to plasma membrane|membrane raft	apoptotic protease activator activity|channel activity|lipid binding|structural constituent of myelin sheath				0				STAD - Stomach adenocarcinoma(1183;0.18)		CCCTGGTGCCCTGGCCCCTGG	0.632			NA											8	68					0	0	0.004482	0	0
NCAPH	23397	broad.mit.edu	37	2	97007797	97007797	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:97007797C>G	uc002svz.1	+	3	366	c.282C>G	c.(280-282)GAC>GAG	p.D94E	NCAPH_uc010fhu.1_Missense_Mutation_p.D70E|NCAPH_uc010fhv.1_Missense_Mutation_p.D83E|NCAPH_uc010yum.1_Missense_Mutation_p.D70E|NCAPH_uc010fhw.1_Missense_Mutation_p.D83E|NCAPH_uc010yun.1_5'UTR|NCAPH_uc002swa.1_Intron	NM_015341	NP_056156	Q15003	CND2_HUMAN	non-SMC condensin I complex, subunit H	94					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|microtubule cytoskeleton|nucleus				urinary_tract(1)|skin(1)	2		Ovarian(717;0.0221)				GGAGTATTGACATTTCAGCTA	0.368			NA											4	63					0	0	0.009096	0	0
CNGA3	1261	broad.mit.edu	37	2	99008327	99008327	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:99008327G>T	uc002syt.2	+	7	984	c.567G>T	c.(565-567)AGG>AGT	p.R189S	CNGA3_uc002syu.2_Missense_Mutation_p.R171S|CNGA3_uc010fij.2_Missense_Mutation_p.R193S	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	189	Helical; (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GCTTCTTTAGGGCCTGTTTCG	0.567			NA											14	61					7.93312e-07	9.26062e-07	0.00245	1	0
SLC9A2	6549	broad.mit.edu	37	2	103299840	103299840	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:103299840C>T	uc002tca.2	+	4	1267	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	375	Helical; Name=J/M8; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CCTTGATCTTCATCTTCATGG	0.493			NA											9	98					0	0	0.008291	0	0
UXS1	80146	broad.mit.edu	37	2	106717570	106717570	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:106717570G>C	uc002tdm.2	-	12	1011	c.913C>G	c.(913-915)CTA>GTA	p.L305V	UXS1_uc002tdl.2_Missense_Mutation_p.L137V|UXS1_uc002tdn.2_Missense_Mutation_p.L310V|UXS1_uc002tdo.2_Missense_Mutation_p.L248V|UXS1_uc010ywh.1_Missense_Mutation_p.L149V	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	305	Lumenal (Potential).				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						CCATTCACTAGATCGCTGGAA	0.552			NA											3	82					0	0	0.004672	0	0
RANBP2	5903	broad.mit.edu	37	2	109381301	109381301	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:109381301A>G	uc002tem.3	+	20	4432	c.4306A>G	c.(4306-4308)ATT>GTT	p.I1436V		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1436	RanBP2-type 2.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						ATCTAGGTGCATTGCGTGTCA	0.363			NA											28	63					0	0	0.004656	0	0
RANBP2	5903	broad.mit.edu	37	2	109388295	109388295	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:109388295G>C	uc002tem.3	+	21	8114	c.7988G>C	c.(7987-7989)AGA>ACA	p.R2663T		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2663	Required for E3 SUMO-ligase activity.|1.|Interaction with UBE2I.|2 X 50 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TACAAGAATAGACCAGATTAT	0.373			NA											6	291					0	0	0.001168	0	0
INSIG2	51141	broad.mit.edu	37	2	118864367	118864367	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:118864367A>G	uc002tlk.2	+	4	630	c.424A>G	c.(424-426)ATT>GTT	p.I142V	INSIG2_uc010yye.1_Missense_Mutation_p.I34V|INSIG2_uc002tll.2_Missense_Mutation_p.I34V	NM_016133	NP_057217	Q9Y5U4	INSI2_HUMAN	insulin induced protein 2	142	Helical; (Potential).				ER-nuclear sterol response pathway	SREBP-SCAP-Insig complex				ovary(1)|central_nervous_system(1)	2						TGCACTATCCATTGGACTGTG	0.398			NA											45	53					0	0	0.002852	0	0
MARCO	8685	broad.mit.edu	37	2	119739773	119739773	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:119739773G>C	uc002tln.1	+	11	1075	c.943G>C	c.(943-945)GTG>CTG	p.V315L	MARCO_uc010yyf.1_Missense_Mutation_p.V237L	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	315	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TCCTGGTGCAGTGGGACACCC	0.637	GBM(8;18 374 7467 11269 32796)		NA											27	34					0	0	0.004656	0	0
FAM123C	205147	broad.mit.edu	37	2	131520777	131520777	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:131520777G>T	uc002trw.2	+	2	1322	c.1132G>T	c.(1132-1134)GAA>TAA	p.E378*	FAM123C_uc010fmv.2_Nonsense_Mutation_p.E378*|FAM123C_uc010fms.1_Nonsense_Mutation_p.E378*|FAM123C_uc010fmt.1_Nonsense_Mutation_p.E378*|FAM123C_uc010fmu.1_Nonsense_Mutation_p.E378*	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	378										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CGAGCAGCCCGAATCCGTGTC	0.637			NA											16	23					6.49762e-13	8.66349e-13	0.006122	1	0
R3HDM1	23518	broad.mit.edu	37	2	136362452	136362452	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:136362452A>T	uc002tuo.2	+	3	407	c.37A>T	c.(37-39)ACT>TCT	p.T13S	R3HDM1_uc010fni.2_Missense_Mutation_p.T11S|R3HDM1_uc002tup.2_Intron	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	13							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		AAAAGATGAAACTGCAACAAT	0.333			NA											25	33					0	0	0.00333	0	0
ARHGAP15	55843	broad.mit.edu	37	2	143913138	143913138	+	Nonsense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:143913138A>T	uc002tvm.3	+	2	230	c.79A>T	c.(79-81)AGA>TGA	p.R27*	ARHGAP15_uc010zbl.1_Nonsense_Mutation_p.R27*	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	27					regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		TGTGCAAATGAGAATCAAAAA	0.438			NA											13	26					0	0	0.00245	0	0
NEB	4703	broad.mit.edu	37	2	152466583	152466584	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:152466583_152466584GG>TT	uc010fnx.2	-	77	11531_11532	c.11340_11341CC>AA	c.(11338-11343)GCCCAG>GCAAAG	p.Q3781K		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3781	Nebulin 104.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCAATGCTCTGGGCTCCAATGT	0.406			NA											23	19					0	0	0.004672	0	0
NEB	4703	broad.mit.edu	37	2	152470891	152470891	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:152470891C>A	uc010fnx.2	-	73	10962	c.10771G>T	c.(10771-10773)GTA>TTA	p.V3591L		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3591	Nebulin 98.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATGTCGCTTACAAGGATCTGA	0.527			NA											105	120					4.60726e-43	7.33126e-43	0.00361	1	0
CYTIP	9595	broad.mit.edu	37	2	158300456	158300456	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:158300456G>C	uc002tzj.1	-	1	149	c.77C>G	c.(76-78)TCT>TGT	p.S26C	CYTIP_uc010zcl.1_Intron	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	26					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TGTGGAGTAAGAGCTATACGC	0.507			NA											9	90					0	0	0.006214	0	0
SCN1A	6323	broad.mit.edu	37	2	166856287	166856287	+	Splice_Site	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:166856287C>A	uc010zcz.1	-	22	4270	c.4252_splice	c.e22-1	p.A1418_splice	SCN1A_uc002udo.3_Splice_Site_p.A1298_splice|SCN1A_uc010fpk.2_Splice_Site_p.A1270_splice	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha							voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TGAATGTGGCCTATTAAGAAG	0.289			NA											40	61					4.32679e-17	6.14489e-17	0.006999	1	0
SCN1A	6323	broad.mit.edu	37	2	166901716	166901716	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:166901716C>T	uc010zcz.1	-	10	1517	c.1499G>A	c.(1498-1500)CGG>CAG	p.R500Q	SCN1A_uc002udo.3_Missense_Mutation_p.R369Q|SCN1A_uc010fpk.2_Missense_Mutation_p.R369Q	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	500						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTTCTTCCTCCGATTTCTTCT	0.463			NA											25	178					0	0	0.00333	0	0
SCN9A	6335	broad.mit.edu	37	2	167055686	167055686	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:167055686G>C	uc010fpl.2	-	27	5771	c.5430C>G	c.(5428-5430)GTC>GTG	p.V1810V	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1821						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAATGAGCTGGACTTTGTTGG	0.468			NA											29	149					0	0	0.008361	0	0
XIRP2	129446	broad.mit.edu	37	2	168105070	168105070	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:168105070G>A	uc002udx.2	+	8	7186	c.7168G>A	c.(7168-7170)GGA>AGA	p.G2390R	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G2215R|XIRP2_uc010fpq.2_Missense_Mutation_p.G2168R|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2215					actin cytoskeleton organization	cell junction	actin binding	p.G2390E(1)		skin(7)|ovary(6)|pancreas(1)	14						AAAGCACAGTGGAGACTTCAT	0.478			NA											38	62					0	0	0.005524	0	0
DLX1	1745	broad.mit.edu	37	2	172952791	172952791	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:172952791G>C	uc002uhl.2	+	3	772	c.574G>C	c.(574-576)GCG>CCG	p.A192P	DLX1_uc002uhm.2_Missense_Mutation_p.G125A	NM_178120	NP_835221	P56177	DLX1_HUMAN	distal-less homeobox 1 isoform 1	192						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GCAGGGTGGGGCGGCTCTGGA	0.612			NA											63	72					0	0	0.00361	0	0
PDK1	5163	broad.mit.edu	37	2	173435551	173435551	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:173435551A>T	uc002uhr.2	+	8	1044	c.944A>T	c.(943-945)AAG>ATG	p.K315M	PDK1_uc010zdz.1_Missense_Mutation_p.K160M|PDK1_uc010zea.1_RNA|PDK1_uc002uhq.1_Missense_Mutation_p.K335M|PDK1_uc002uhs.2_Missense_Mutation_p.K315M|PDK1_uc010zeb.1_Missense_Mutation_p.K335M	NM_002610	NP_002601	Q15118	PDK1_HUMAN	pyruvate dehydrogenase kinase 1 precursor	315	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|small GTPase mediated signal transduction	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(3)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.12)			TTGACTGTGAAGGTAAATGTG	0.368			NA							Autosomal_Dominant_Polycystic_Kidney_Disease				19	20					0	0	0.006122	0	0
CDCA7	83879	broad.mit.edu	37	2	174228182	174228182	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:174228182A>C	uc002uid.1	+	3	507	c.376A>C	c.(376-378)AAA>CAA	p.K126Q	CDCA7_uc002uic.1_Missense_Mutation_p.K205Q|CDCA7_uc010zej.1_Missense_Mutation_p.K161Q|CDCA7_uc010zek.1_Missense_Mutation_p.K84Q	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	126					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			AAAGCAAAACAAAGCAATGGT	0.348			NA											24	44					0	0	0.003954	0	0
HOXD12	3238	broad.mit.edu	37	2	176964621	176964621	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:176964621C>G	uc010zev.1	+	1	92	c.92C>G	c.(91-93)CCG>CGG	p.P31R	HOXD12_uc010zew.1_Missense_Mutation_p.P31R	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	31						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		AACCTGAGGCCGAATGGCGGC	0.667			NA											13	61					0	0	0.00245	0	0
TTN	7273	broad.mit.edu	37	2	179391982	179391982	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:179391982G>C	uc010zfg.1	-	312	100253	c.100029C>G	c.(100027-100029)GGC>GGG	p.G33343G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G27038G|TTN_uc010zfi.1_Silent_p.G26971G|TTN_uc010zfj.1_Silent_p.G26846G|TTN_uc002umq.2_Silent_p.G259G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34270							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAGAACTTTGCCTTCATCAA	0.418			NA											3	26					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179467007	179467007	+	Splice_Site	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:179467007A>G	uc010zfg.1	-	232	47640	c.47416_splice	c.e232+1	p.E15806_splice	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Splice_Site_p.E9501_splice|TTN_uc010zfi.1_Splice_Site_p.E9434_splice|TTN_uc010zfj.1_Splice_Site_p.E9309_splice	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGTACTAGTACCTTGAATAT	0.348			NA											5	83					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179641663	179641663	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:179641663C>A	uc010zfg.1	-	28	5152	c.4928G>T	c.(4927-4929)TGC>TTC	p.C1643F	TTN_uc010zfh.1_Missense_Mutation_p.C1597F|TTN_uc010zfi.1_Missense_Mutation_p.C1597F|TTN_uc010zfj.1_Missense_Mutation_p.C1597F|TTN_uc002unb.2_Missense_Mutation_p.C1643F|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1643							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTACTTTGCATCTTGTAGT	0.458			NA											22	23					8.10497e-08	9.72151e-08	0.010504	1	0
C2orf67	151050	broad.mit.edu	37	2	210968932	210968932	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:210968932C>A	uc002vds.2	-	4	1532	c.1324G>T	c.(1324-1326)GGG>TGG	p.G442W	C2orf67_uc002vdt.2_Missense_Mutation_p.G442W|C2orf67_uc002vdw.2_Missense_Mutation_p.G442W|C2orf67_uc002vdv.2_Missense_Mutation_p.G442W|C2orf67_uc002vdx.1_Missense_Mutation_p.G442W	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	442										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		TGAGGATTCCCTAGAATGTTT	0.413			NA											15	28					3.27435e-08	3.94915e-08	0.00245	1	0
CPS1	1373	broad.mit.edu	37	2	211542680	211542680	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:211542680A>G	uc002vee.3	+	38	4606	c.4474A>G	c.(4474-4476)AGG>GGG	p.R1492G	CPS1_uc010fur.2_Missense_Mutation_p.R1498G|CPS1_uc010fus.2_Missense_Mutation_p.R1041G	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1492					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TTTCCACTACAGGCAGTACAG	0.443			NA											24	207					0	0	0.00333	0	0
CXCR2P1	3580	broad.mit.edu	37	2	218925443	218925443	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:218925443G>C	uc002vgx.2	-	1	571	c.278C>G	c.(277-279)CCC>CGC	p.P93R	RUFY4_uc002vgw.2_Intron	NR_002712				Homo sapiens interleukin 8 receptor, beta pseudogene, mRNA (cDNA clone IMAGE:5450999), with apparent retained intron.												0						GCGTATGCAGGGTGAATCTGT	0.532			NA											17	64					0	0	0.004007	0	0
SPEG	10290	broad.mit.edu	37	2	220355136	220355136	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:220355136G>C	uc010fwg.2	+	37	8927	c.8927G>C	c.(8926-8928)CGC>CCC	p.R2976P		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2976	ATP (By similarity).|Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CACAGGGGCCGCTTTGGTGTT	0.652			NA											14	26					0	0	0.004007	0	0
OBSL1	23363	broad.mit.edu	37	2	220424202	220424202	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:220424202T>A	uc010fwk.2	-	9	3028	c.2971A>T	c.(2971-2973)ATA>TTA	p.I991L	OBSL1_uc002vmh.1_5'UTR|OBSL1_uc010zli.1_5'UTR|OBSL1_uc010fwl.1_Missense_Mutation_p.I466L	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	991	Ig-like 8.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		CGAGGGTATATGATCCGCACT	0.582			NA									OREG0003986	type=REGULATORY REGION|Gene=OBSL1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	42	54					0	0	0.009718	0	0
TRIP12	9320	broad.mit.edu	37	2	230667127	230667127	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:230667127G>A	uc002vpw.1	-	20	2931	c.2822C>T	c.(2821-2823)ACA>ATA	p.T941I	TRIP12_uc002vpx.1_Missense_Mutation_p.T989I|TRIP12_uc002vpy.1_Missense_Mutation_p.T671I|TRIP12_uc010zlz.1_Intron	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	941					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		TGGTGGACTTGTCAACAAAGA	0.453			NA											37	56					0	0	0.005524	0	0
SP110	3431	broad.mit.edu	37	2	231067407	231067407	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:231067407G>C	uc002vqh.3	-	9	1176	c.936C>G	c.(934-936)CTC>CTG	p.L312L	SP110_uc002vqg.3_Silent_p.L312L|SP110_uc002vqi.3_Silent_p.L312L|SP110_uc010fxk.2_Silent_p.L310L|SP110_uc010fxj.2_Intron	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	312					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		CCACCCTTTTGAGCTTCTTTT	0.458			NA											7	141					0	0	0.006214	0	0
NGEF	25791	broad.mit.edu	37	2	233745956	233745956	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:233745956G>T	uc002vts.2	-	14	2090	c.1842C>A	c.(1840-1842)TGC>TGA	p.C614*	NGEF_uc010zmm.1_Nonsense_Mutation_p.C337*|NGEF_uc010fyg.1_Nonsense_Mutation_p.C522*	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	614	SH3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GGACCTGGGGGCAGTCTGAGG	0.627			NA											17	50					6.94344e-10	8.7749e-10	0.006122	1	0
STK35	140901	broad.mit.edu	37	20	2097734	2097734	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:2097734G>T	uc010gak.2	+	3	1315	c.1315G>T	c.(1315-1317)GCC>TCC	p.A439S	STK35_uc010zpu.1_Intron|STK35_uc002wfw.3_Missense_Mutation_p.A306S	NM_080836	NP_543026	Q8TDR2	STK35_HUMAN	serine/threonine kinase 35	439	Protein kinase.					cytoplasm|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GGACATCTTTGCCCTGGGCAT	0.498			NA											41	56					1.47197e-15	2.04063e-15	0.007835	1	0
CPXM1	56265	broad.mit.edu	37	20	2776685	2776685	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:2776685G>T	uc002wgu.2	-	10	1429	c.1365C>A	c.(1363-1365)CAC>CAA	p.H455Q	CPXM1_uc010gas.2_Missense_Mutation_p.H455Q	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	455					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						TGGGGACGATGTGGGGCACCT	0.577			NA											25	75					7.92952e-12	1.03666e-11	0.003954	1	0
RASSF2	9770	broad.mit.edu	37	20	4776565	4776565	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:4776565G>T	uc002wld.2	-	4	237	c.183C>A	c.(181-183)GGC>GGA	p.G61G	RASSF2_uc002wlc.2_5'Flank|RASSF2_uc002wle.2_RNA|RASSF2_uc002wlf.2_Silent_p.G61G	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2	61					cell cycle|signal transduction	nucleus	protein binding			ovary(3)|lung(2)|large_intestine(1)	6						GCCGGCGCAGGCCCCAGGAGA	0.592	Melanoma(158;1891 3343 50738)		NA											19	60					1.56452e-12	2.07335e-12	0.007413	1	0
PLCB4	5332	broad.mit.edu	37	20	9360751	9360751	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:9360751C>T	uc002wnf.2	+	12	931	c.795C>T	c.(793-795)GCC>GCT	p.A265A	PLCB4_uc010gbw.1_Silent_p.A265A|PLCB4_uc010gbx.2_Silent_p.A265A|PLCB4_uc002wne.2_Silent_p.A265A|PLCB4_uc002wnh.2_Silent_p.A112A	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	265					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTTATGATGCCAAAAGGGCAA	0.308			NA											15	36					0	0	0.00499	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20610186	20610186	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:20610186C>A	uc002wrz.2	-	10	1197	c.1054G>T	c.(1054-1056)GGT>TGT	p.G352C	RALGAPA2_uc010gcx.2_Missense_Mutation_p.G56C|RALGAPA2_uc010zsg.1_5'UTR	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	352					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GTGGGCCCACCACCATCCAGC	0.552			NA											36	61					1.06647e-15	1.48557e-15	0.003755	1	0
NINL	22981	broad.mit.edu	37	20	25507047	25507047	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:25507047G>A	uc002wux.1	-	2	251	c.177C>T	c.(175-177)GCC>GCT	p.A59A	NINL_uc010gdn.1_Silent_p.A59A|NINL_uc010gdo.1_5'UTR|NINL_uc010ztf.1_Silent_p.A75A	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	59	EF-hand 2.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CACTCACCCTGGCGAAATGGT	0.512			NA											70	144					0	0	0.00361	0	0
ZNF337	26152	broad.mit.edu	37	20	25657370	25657370	+	Missense_Mutation	SNP	C	C	G	rs140373318		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:25657370C>G	uc002wva.2	-	4	1076	c.554G>C	c.(553-555)CGT>CCT	p.R185P	uc002wuz.2_RNA|ZNF337_uc010ztg.1_Missense_Mutation_p.R153P|ZNF337_uc002wvb.2_Missense_Mutation_p.R185P|ZNF337_uc002wvc.2_Missense_Mutation_p.R185P	NM_015655	NP_056470	Q9Y3M9	ZN337_HUMAN	zinc finger protein 337	185	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTCTTGCCCACGCTCTGCACA	0.428			NA											42	167					0	0	0.00874	0	0
C20orf186	149954	broad.mit.edu	37	20	31692679	31692679	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:31692679G>T	uc010zue.1	+	14	1759	c.1744G>T	c.(1744-1746)GCT>TCT	p.A582S		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	582						cytoplasm|extracellular region	lipid binding				0						CGCAATGAACGGTGAGAGCGG	0.567			NA											28	45					3.73988e-18	5.33744e-18	0.00632	1	0
ERGIC3	51614	broad.mit.edu	37	20	34135189	34135189	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:34135189T>C	uc002xct.2	+	5	463	c.394T>C	c.(394-396)TTT>CTT	p.F132L	ERGIC3_uc002xcr.1_Missense_Mutation_p.F132L|ERGIC3_uc010zvg.1_Missense_Mutation_p.F132L|ERGIC3_uc002xcs.2_Missense_Mutation_p.F132L|ERGIC3_uc002xcu.2_Missense_Mutation_p.F132L|ERGIC3_uc002xcv.2_Missense_Mutation_p.F95L	NM_015966	NP_057050	Q9Y282	ERGI3_HUMAN	serologically defined breast cancer antigen 84	132	Lumenal (Potential).				vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane	protein binding			large_intestine(2)|ovary(1)	3	Lung NSC(9;0.00489)|all_lung(11;0.00729)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			GGTGACGGTGTTTGACCCTGA	0.592			NA											17	56					0	0	0.006122	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060244	35060244	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:35060244C>T	uc002xff.2	+	3	559	c.124C>T	c.(124-126)CGC>TGC	p.R42C	DLGAP4_uc010zvp.1_Missense_Mutation_p.R42C	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	42					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GGCCTTCGCCCGCGAGGCCCG	0.697			NA											20	35					0	0	0.010504	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060397	35060397	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:35060397C>A	uc002xff.2	+	3	712	c.277C>A	c.(277-279)CAA>AAA	p.Q93K	DLGAP4_uc010zvp.1_Missense_Mutation_p.Q93K	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	93					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CAGCCATGCCCAAGCCACCAA	0.627			NA											12	79					0.00010058	0.00011102	0.001368	1	0
TGM2	7052	broad.mit.edu	37	20	36779382	36779382	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:36779382A>G	uc002xhr.2	-	4	611	c.511T>C	c.(511-513)TCG>CCG	p.S171P	TGM2_uc010zvx.1_Missense_Mutation_p.S90P|TGM2_uc010zvy.1_Missense_Mutation_p.S111P|TGM2_uc002xhs.1_Missense_Mutation_p.S147P|TGM2_uc002xht.2_Missense_Mutation_p.S171P|TGM2_uc002xhu.3_Missense_Mutation_p.S171P	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	171					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	AACTTGGCCGAGCCCTGGTAG	0.582			NA											14	148					0	0	0.00245	0	0
PTPRT	11122	broad.mit.edu	37	20	40714370	40714370	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:40714370G>A	uc002xkg.2	-	28	4154	c.3970C>T	c.(3970-3972)CGG>TGG	p.R1324W	PTPRT_uc010ggj.2_Missense_Mutation_p.R1343W|PTPRT_uc010ggi.2_Missense_Mutation_p.R527W	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1324	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.		R -> L (in a lung cancer; reduced phosphatase activity).		homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTACTTACCCGGGCCATGTTA	0.592			NA											19	66					0	0	0.008871	0	0
L3MBTL	26013	broad.mit.edu	37	20	42143696	42143696	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:42143696G>C	uc010zwh.1	+	5	530	c.484G>C	c.(484-486)GAG>CAG	p.E162Q	L3MBTL_uc010ggk.1_Missense_Mutation_p.E94Q|L3MBTL_uc002xkl.2_Missense_Mutation_p.E94Q|L3MBTL_uc002xkm.2_Missense_Mutation_p.E94Q|L3MBTL_uc010ggl.2_Missense_Mutation_p.E94Q	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	94					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			GGACCCCCCAGAGGATGATAG	0.627			NA											8	46					0	0	0.00308	0	0
NCOA3	8202	broad.mit.edu	37	20	46275899	46275899	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:46275899G>T	uc002xtk.2	+	18	3540	c.3335G>T	c.(3334-3336)GGA>GTA	p.G1112V	NCOA3_uc010ght.1_Missense_Mutation_p.G1107V|NCOA3_uc002xtl.2_Missense_Mutation_p.G1112V|NCOA3_uc002xtm.2_Missense_Mutation_p.G1112V|NCOA3_uc002xtn.2_Missense_Mutation_p.G1112V|NCOA3_uc010zyc.1_Missense_Mutation_p.G907V	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1112	Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						GGATTATATGGACAGACATAC	0.453			NA											28	47					1.32143e-28	2.02868e-28	0.00632	1	0
DDX27	55661	broad.mit.edu	37	20	47838011	47838011	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:47838011G>A	uc002xuh.2	+	2	270	c.209G>A	c.(208-210)CGA>CAA	p.R70Q		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	70	Asp/Glu/Lys-rich.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CTGGGCAGACGACAAAAAGCT	0.478			NA											10	38					0	0	0.008291	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872088	51872088	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:51872088C>A	uc002xwo.2	+	2	3047	c.2091C>A	c.(2089-2091)GCC>GCA	p.A697A		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	697					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CACTCAGCGCCCTGCAGTCCG	0.612			NA											5	73					0.00198382	0.00212517	0.001984	1	0
C20orf85	128602	broad.mit.edu	37	20	56728613	56728613	+	Nonsense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:56728613A>T	uc002xyv.2	+	2	120	c.82A>T	c.(82-84)AAG>TAG	p.K28*		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	28										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			ATACCGTCTGAAGGCTGAATC	0.478			NA											5	163					0	0	0.001168	0	0
GNAS	2778	broad.mit.edu	37	20	57415891	57415891	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:57415891C>G	uc002xzt.2	+	1	1097	c.730C>G	c.(730-732)CGT>GGT	p.R244G	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CCCCATCCGGCGTCACTAATG	0.612	Colon(117;935 1597 6045 8307 46442)		NA	Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			4	31					0	0	0.009096	0	0
ZNF831	128611	broad.mit.edu	37	20	57768489	57768489	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:57768489C>A	uc002yan.2	+	1	2415	c.2415C>A	c.(2413-2415)GTC>GTA	p.V805V		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	805						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCCAGACTGTCCTGAGATGGC	0.627			NA											27	16					3.73808e-20	5.45085e-20	0.005443	1	0
ZNF831	128611	broad.mit.edu	37	20	57829259	57829259	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:57829259G>T	uc002yan.2	+	5	4495	c.4495G>T	c.(4495-4497)GTG>TTG	p.V1499L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1499						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TTCTCTGCCAGTGAGAACAGA	0.507			NA											51	76					7.84493e-40	1.24378e-39	0.00361	1	0
PPP1R3D	5509	broad.mit.edu	37	20	58514485	58514485	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:58514485A>C	uc002ybb.2	-	1	868	c.502T>G	c.(502-504)TTT>GTT	p.F168V	C20orf177_uc002yba.2_Intron|C20orf177_uc010zzx.1_5'Flank|C20orf177_uc002ybc.2_5'Flank	NM_006242	NP_006233	O95685	PPR3D_HUMAN	protein phosphatase 1, regulatory subunit 3D	168					glycogen metabolic process		protein binding|protein serine/threonine phosphatase activity				0	all_lung(29;0.00391)		BRCA - Breast invasive adenocarcinoma(7;5.12e-09)			CGCTCGCCAAAGTCGGCGGCC	0.662			NA											5	24					0	0	0.000602	0	0
CHRNA4	1137	broad.mit.edu	37	20	61978135	61978135	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:61978135C>T	uc002yes.2	-	6	2017	c.1839G>A	c.(1837-1839)GGG>GGA	p.G613G	CHRNA4_uc002yet.1_Silent_p.G437G|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.G542G|CHRNA4_uc002yev.1_Silent_p.G437G|CHRNA4_uc010gkf.1_Silent_p.G437G	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	613	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GGCCCACCGTCCCCAGCAGGC	0.647			NA											33	31					0	0	0.009535	0	0
SRMS	6725	broad.mit.edu	37	20	62172184	62172184	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:62172184C>A	uc002yfi.1	-	8	1495	c.1454G>T	c.(1453-1455)AGA>ATA	p.R485I		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	485	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			GGGGTGGCATCTGTGGATGGC	0.682			NA											19	114					1.56452e-12	2.07335e-12	0.007413	1	0
MYT1	4661	broad.mit.edu	37	20	62839102	62839102	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:62839102G>T	uc002yii.2	+	7	917	c.553G>T	c.(553-555)GGC>TGC	p.G185C	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	185					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AGAGGACTTGGGCCAGGCGGC	0.592	GBM(59;481 1041 20555 21139 33705)		NA											16	80					3.41278e-10	4.3255e-10	0.00499	1	0
PCMTD2	55251	broad.mit.edu	37	20	62904645	62904645	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:62904645C>G	uc002yil.3	+	6	978	c.778C>G	c.(778-780)CAT>GAT	p.H260D	PCMTD2_uc002yim.3_Missense_Mutation_p.H233D	NM_018257	NP_060727	Q9NV79	PCMD2_HUMAN	protein-L-isoaspartate (D-aspartate)	260						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AAAGATTATTCATCAGGAAAC	0.502			NA											20	107					0	0	0.008871	0	0
TPTE	7179	broad.mit.edu	37	21	10910351	10910351	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:10910351C>G	uc002yip.1	-	22	1773	c.1405G>C	c.(1405-1407)GGT>CGT	p.G469R	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G451R|TPTE_uc002yir.1_Missense_Mutation_p.G431R|TPTE_uc010gkv.1_Missense_Mutation_p.G331R	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	469	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGAGGTAGACCGTCGAATACA	0.338			NA											13	101					0	0	0.00245	0	0
GRIK1	2897	broad.mit.edu	37	21	30961211	30961211	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:30961211G>T	uc002yno.1	-	11	1981	c.1517C>A	c.(1516-1518)GCC>GAC	p.A506D	GRIK1_uc002ynn.2_Missense_Mutation_p.A491D|GRIK1_uc011acs.1_Missense_Mutation_p.A506D|GRIK1_uc011act.1_Intron|GRIK1_uc010glq.1_Missense_Mutation_p.A349D	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	506	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	GTCATTCTGGGCCCCATATTT	0.378			NA											43	94					1.97e-11	2.54118e-11	0.002522	1	0
GRIK1	2897	broad.mit.edu	37	21	31045363	31045363	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:31045363G>C	uc002yno.1	-	4	1130	c.666C>G	c.(664-666)GGC>GGG	p.G222G	GRIK1_uc002ynn.2_Silent_p.G222G|GRIK1_uc011acs.1_Silent_p.G222G|GRIK1_uc011act.1_Silent_p.G166G|GRIK1_uc010glq.1_Silent_p.G80G|GRIK1_uc002ynr.2_Silent_p.G222G	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	222	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	AGAACTCCTTGCCTTTCTTCA	0.438			NA											12	256					0	0	0.000978	0	0
KRTAP6-3	337968	broad.mit.edu	37	21	31964947	31964947	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:31964947G>A	uc002yom.2	+	1	189	c.183G>A	c.(181-183)CTG>CTA	p.L61L		NM_181605	NP_853636			keratin associated protein 6-3												0						atggaggcctgggctgtggct	0.075			NA											25	26					0	0	0.00632	0	0
MRAP	56246	broad.mit.edu	37	21	33671311	33671312	+	Missense_Mutation	DNP	CA	CA	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:33671311_33671312CA>AT	uc002ypj.2	+	3	216_217	c.29_30CA>AT	c.(28-30)CCA>CAT	p.P10H	MRAP_uc002ypk.2_Missense_Mutation_p.P10H|MRAP_uc011ado.1_Intron|MRAP_uc002ypl.2_Missense_Mutation_p.P10H	NM_178817	NP_848932	Q8TCY5	MRAP_HUMAN	melanocortin 2 receptor accessory protein	10	Cytoplasmic (Potential).				positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|integral to membrane|perinuclear region of cytoplasm|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding				0						GCCTCTGCCCCATACTACAGCT	0.609			NA											19	45					0	0	0.004672	0	0
DOPEY2	9980	broad.mit.edu	37	21	37572692	37572692	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:37572692G>A	uc002yvg.2	+	4	463	c.384G>A	c.(382-384)CTG>CTA	p.L128L	DOPEY2_uc011aeb.1_Silent_p.L128L	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	128					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TGCTCACCCTGTACGAGAAGT	0.612			NA											11	78					0	0	0.000978	0	0
RIPK4	54101	broad.mit.edu	37	21	43161678	43161678	+	Nonsense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:43161678G>A	uc002yzn.1	-	8	1723	c.1675C>T	c.(1675-1677)CGA>TGA	p.R559*		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	559						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						TCCACGCCTCGGCGCAGCAGG	0.662			NA											5	37					0	0	0.000602	0	0
UBASH3A	53347	broad.mit.edu	37	21	43857644	43857644	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:43857644C>T	uc002zbe.2	+	11	1476	c.1440C>T	c.(1438-1440)GCC>GCT	p.A480A	UBASH3A_uc002zbf.2_Silent_p.A442A|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_Intron|UBASH3A_uc010gpe.2_Silent_p.A442A	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	480	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						CTGTGTTTGCCTCCCCAGCCC	0.527			NA											19	60					0	0	0.002299	0	0
SIK1	150094	broad.mit.edu	37	21	44845963	44845963	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr21:44845963G>T	uc002zdf.2	-	2	223	c.96C>A	c.(94-96)ACC>ACA	p.T32T		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	32	Protein kinase.				anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						CTTTGCCCAGGGTCCGCTCGA	0.682			NA											3	11					0.004672	0.00497434	0.004672	1	0
PI4KAP2	375133	broad.mit.edu	37	22	21829507	21829507	+	Missense_Mutation	SNP	G	G	A	rs140118179	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr22:21829507G>A	uc002zuv.3	-	14	3895	c.1636C>T	c.(1636-1638)CTC>TTC	p.L546F	PI4KAP2_uc002zuw.2_Intron|PI4KAP2_uc011aid.1_Intron					SubName: Full=Putative uncharacterized protein PI4KA;												0						TACTTCAAGAGCTTGATTGTC	0.542			NA											3	7					0	0	0.009096	0	0
APOL4	80832	broad.mit.edu	37	22	36587462	36587462	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr22:36587462G>T	uc003aox.2	-	6	942	c.717C>A	c.(715-717)GCC>GCA	p.A239A	APOL4_uc003aow.2_Silent_p.A236A|APOL4_uc010gww.2_Silent_p.A81A	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	239					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						TCATTTTTGTGGCTTCGTCAA	0.448			NA											9	35					1.5739e-10	2.00649e-10	0.004007	1	0
ENTHD1	150350	broad.mit.edu	37	22	40283671	40283671	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr22:40283671C>A	uc003ayg.2	-	2	333	c.82G>T	c.(82-84)GAC>TAC	p.D28Y		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	28	ENTH.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CCCCAAGGGTCGTTAGAAGTT	0.393			NA											26	34					5.49717e-05	6.122e-05	0.00333	1	0
CPNE9	151835	broad.mit.edu	37	3	9768831	9768831	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:9768831G>T	uc003bsd.2	+	19	1608	c.1437G>T	c.(1435-1437)GTG>GTT	p.V479V		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	479	VWFA.									ovary(2)	2	Medulloblastoma(99;0.227)					ATGTGCGCGTGTCCTCTAGGG	0.597			NA											23	85					2.48779e-11	3.19493e-11	0.005443	1	0
CAND2	23066	broad.mit.edu	37	3	12856744	12856745	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:12856744_12856745CC>AA	uc003bxk.2	+	8	1160_1161	c.1111_1112CC>AA	c.(1111-1113)CCC>AAC	p.P371N	CAND2_uc003bxj.2_Missense_Mutation_p.P278N	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	371					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						TGACCTGCTGCCCGATTTCCAC	0.594	GBM(43;676 868 1633 6395 37496)		NA											39	29					0	0	0.004672	0	0
IQSEC1	9922	broad.mit.edu	37	3	12983333	12983333	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:12983333C>A	uc003bxt.2	-	2	107	c.98G>T	c.(97-99)GGC>GTC	p.G33V	IQSEC1_uc003bxu.3_5'UTR|IQSEC1_uc011auw.1_Missense_Mutation_p.G19V	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	33					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CAGGGATGTGCCAGTCTCACT	0.647			NA											10	8					1.58986e-06	1.84112e-06	0.008291	1	0
CLASP2	23122	broad.mit.edu	37	3	33626403	33626403	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:33626403C>A	uc003cfu.2	-	22	2432	c.2078G>T	c.(2077-2079)CGG>CTG	p.R693L	CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Missense_Mutation_p.R286L	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	694										ovary(3)|central_nervous_system(1)	4						AGACCCAGACCGGCTACCAGC	0.418			NA											26	31					4.7796e-09	5.90342e-09	0.004656	1	0
DCLK3	85443	broad.mit.edu	37	3	36779284	36779284	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:36779284C>A	uc003cgi.2	-	2	1358	c.867G>T	c.(865-867)AGG>AGT	p.R289S		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	289						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CTCCTCGGGTCCTGCGGAGCT	0.557			NA											80	87					5.98988e-27	9.11549e-27	0.00361	1	0
CX3CR1	1524	broad.mit.edu	37	3	39307550	39307550	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:39307550G>C	uc003cjl.2	-	2	543	c.451C>G	c.(451-453)CTA>GTA	p.L151V		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	151	Helical; Name=4; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		CAGACGCCTAGGCTGATGGTG	0.547			NA											7	103					0	0	0.001984	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307625	39307625	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:39307625C>A	uc003cjl.2	-	2	468	c.376G>T	c.(376-378)GAT>TAT	p.D126Y		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	126	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		AGGTACCTATCAATGCTGATG	0.517			NA											44	43					3.54909e-21	5.2189e-21	0.002852	1	0
ANO10	55129	broad.mit.edu	37	3	43618386	43618386	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:43618386T>A	uc003cmv.2	-	6	1131	c.960A>T	c.(958-960)CCA>CCT	p.P320P	ANO10_uc011azs.1_Silent_p.P320P|ANO10_uc003cmw.2_Silent_p.P254P|ANO10_uc010hil.2_Intron|ANO10_uc011azt.1_Silent_p.P209P	NM_018075	NP_060545	Q9NW15	ANO10_HUMAN	transmembrane protein 16K	320	Helical; (Potential).				cell death	chloride channel complex	chloride channel activity			ovary(2)	2						GGCACACGAATGGCAGGGAGA	0.498			NA											26	35					0	0	0.004656	0	0
RAD54L2	23132	broad.mit.edu	37	3	51696623	51696624	+	Missense_Mutation	DNP	CA	CA	AC			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:51696623_51696624CA>AC	uc011bdt.1	+	22	3716_3717	c.3591_3592CA>AC	c.(3589-3594)AGCACC>AGACCC	p.1197_1198ST>RP	RAD54L2_uc003dbh.2_Missense_Mutation_p.786_787ST>RP|RAD54L2_uc011bdu.1_Missense_Mutation_p.891_892ST>RP|RAD54L2_uc003dbj.2_Missense_Mutation_p.523_524ST>RP	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1197_1198						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		GCTCCCCAAGCACCAATGCCGC	0.629			NA											7	51					0	0	0.004672	0	0
DUSP7	1849	broad.mit.edu	37	3	52088240	52088240	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:52088240C>T	uc003dct.2	-	2	747	c.668G>A	c.(667-669)CGA>CAA	p.R223Q	DUSP7_uc010hma.2_Missense_Mutation_p.R223Q	NM_001947	NP_001938	Q16829	DUS7_HUMAN	dual specificity phosphatase 7	223	Ser-rich.				inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein binding|protein tyrosine phosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;5.14e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GGGCAGCTCTCGGTCCGACTC	0.677			NA											46	33					0	0	0.009718	0	0
PXK	54899	broad.mit.edu	37	3	58368341	58368341	+	Missense_Mutation	SNP	A	A	G	rs144000489		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:58368341A>G	uc003djz.1	+	4	401	c.302A>G	c.(301-303)AAC>AGC	p.N101S	PXK_uc003djx.1_Missense_Mutation_p.N101S|PXK_uc003djy.1_Missense_Mutation_p.N84S|PXK_uc003dka.1_Missense_Mutation_p.N101S|PXK_uc003dkb.1_Missense_Mutation_p.N18S|PXK_uc003dkc.1_Missense_Mutation_p.N84S|PXK_uc011bfe.1_Missense_Mutation_p.N68S|PXK_uc010hnj.1_Missense_Mutation_p.N68S|PXK_uc003dkd.1_Intron|PXK_uc010hnk.1_5'UTR	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	101	Protein kinase.|PX.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		AACTATCTCAACGTGATCACA	0.383			NA											9	43					0	0	0.006214	0	0
MAGI1	9223	broad.mit.edu	37	3	65367627	65367627	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:65367627C>G	uc003dmn.2	-	16	3152	c.2626G>C	c.(2626-2628)GTG>CTG	p.V876L	MAGI1_uc003dmm.2_Missense_Mutation_p.V904L|MAGI1_uc003dmo.2_Missense_Mutation_p.V904L|MAGI1_uc003dmp.2_Missense_Mutation_p.V876L|MAGI1_uc003dmq.1_5'Flank|MAGI1_uc010hnx.1_Missense_Mutation_p.V187L	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	904					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		AGCTGGACCACAAGCTGGTGT	0.507			NA											15	39					0	0	0.003163	0	0
EPHA3	2042	broad.mit.edu	37	3	89445102	89445102	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:89445102C>A	uc003dqy.2	+	6	1647	c.1422C>A	c.(1420-1422)TAC>TAA	p.Y474*	EPHA3_uc003dqx.1_Nonsense_Mutation_p.Y474*|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	474	Extracellular (Potential).|Fibronectin type-III 2.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		AGGTCAAATACTATGAAAAGG	0.438			NA								TSP Lung(6;0.00050)			38	55					4.92203e-23	7.33676e-23	0.00623	1	0
OR5AC2	81050	broad.mit.edu	37	3	97806523	97806523	+	Silent	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:97806523T>G	uc011bgs.1	+	1	507	c.507T>G	c.(505-507)ACT>ACG	p.T169T		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGCGACTAACTTTCTGCAGGT	0.338			NA											5	236					0	0	0.000602	0	0
OR5K2	402135	broad.mit.edu	37	3	98217388	98217388	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:98217388C>A	uc011bgx.1	+	1	864	c.864C>A	c.(862-864)TTC>TTA	p.F288L		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TAAATCCTTTCATTTATAGTC	0.308			NA											10	29					1.08611e-07	1.29383e-07	0.000978	1	0
ABI3BP	25890	broad.mit.edu	37	3	100605099	100605099	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:100605099G>T	uc003dun.2	-	5	636	c.551C>A	c.(550-552)ACT>AAT	p.T184N	ABI3BP_uc003duo.2_Missense_Mutation_p.T177N|ABI3BP_uc003dup.3_Missense_Mutation_p.T177N	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	184	Fibronectin type-III 1.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						AATTGTTTCAGTGGCTGGACA	0.333			NA											14	28					4.36969e-10	5.53029e-10	0.001855	1	0
RG9MTD1	54931	broad.mit.edu	37	3	101284693	101284693	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:101284693G>T	uc003duz.2	+	2	1216	c.1068G>T	c.(1066-1068)ATG>ATT	p.M356I		NM_017819	NP_060289	Q7L0Y3	MRRP1_HUMAN	RNA (guanine-9-) methyltransferase domain	356					tRNA processing	mitochondrion	methyltransferase activity|protein binding			ovary(1)	1						TAGATCAAATGATACGTATTT	0.378	Colon(61;905 1056 3196 19548 40505)		NA											13	25					2.27111e-07	2.68348e-07	0.001368	1	0
ZBTB11	27107	broad.mit.edu	37	3	101370066	101370066	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:101370066C>A	uc003dve.3	-	11	3336	c.3106G>T	c.(3106-3108)GCA>TCA	p.A1036S		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	1036					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATAGCTTCTGCAACTTCAGAT	0.363			NA											30	54					1.06801e-11	1.38794e-11	0.009535	1	0
MYH15	22989	broad.mit.edu	37	3	108188944	108188944	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:108188944C>A	uc003dxa.1	-	15	1616	c.1559G>T	c.(1558-1560)TGG>TTG	p.W520L		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	520	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AATAGACACCCATTCAATGCT	0.338			NA											25	25					4.7796e-09	5.90342e-09	0.004656	1	0
ZNF80	7634	broad.mit.edu	37	3	113955154	113955154	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:113955154G>A	uc010hqo.2	-	1	1272	c.768C>T	c.(766-768)TAC>TAT	p.Y256Y	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	256						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				AAGCAGAGTGGTAGCCAAAGT	0.408	GBM(23;986 1114 21716)		NA											12	81					0	0	0.001368	0	0
ACPP	55	broad.mit.edu	37	3	132056327	132056327	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:132056327C>T	uc010htp.2	+	5	574	c.484C>T	c.(484-486)CCT>TCT	p.P162S	ACPP_uc003eon.3_Intron|ACPP_uc003eop.3_Missense_Mutation_p.P162S	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	162						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						CAGGAACTGCCCTCGTTTTCA	0.373			NA											48	62					0	0	0.00361	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133672506	133672506	+	Splice_Site	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:133672506C>A	uc003eqa.3	-	5	998	c.724_splice	c.e5+1	p.A242_splice	SLCO2A1_uc003eqb.3_Splice_Site_p.A166_splice|SLCO2A1_uc011blv.1_Intron|SLCO2A1_uc010htw.1_Splice_Site_p.A74_splice	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,						sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CACATACTCACCTGTGTTGAC	0.527			NA											32	34					1.08312e-15	1.50395e-15	0.009535	1	0
STAG1	10274	broad.mit.edu	37	3	136078061	136078061	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:136078061C>T	uc003era.1	-	27	3157	c.2865G>A	c.(2863-2865)CTG>CTA	p.L955L	STAG1_uc003erb.1_Silent_p.L955L	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	955					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						AGCGACGTGCCAGTTCTTTAA	0.413			NA											29	25					0	0	0.007291	0	0
ATR	545	broad.mit.edu	37	3	142224081	142224081	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:142224081T>G	uc003eux.3	-	29	5218	c.5096A>C	c.(5095-5097)GAA>GCA	p.E1699A		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1699	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TAGAGATGGTTCTGCCTTTCT	0.423			NA						Other_conserved_DNA_damage_response_genes					112	109					0	0	0.00361	0	0
SLC9A9	285195	broad.mit.edu	37	3	143271264	143271264	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:143271264G>T	uc003evn.2	-	9	1211	c.1029C>A	c.(1027-1029)GTC>GTA	p.V343V		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	343	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						GTGCTTGTGTGACTCCACAGA	0.353			NA											35	30					3.66082e-28	5.60041e-28	0.005524	1	0
CP	1356	broad.mit.edu	37	3	148919898	148919898	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:148919898C>A	uc003ewy.3	-	7	1592	c.1339G>T	c.(1339-1341)GGC>TGC	p.G447C	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.G228C|CP_uc003ewz.2_Missense_Mutation_p.G447C|CP_uc010hvf.1_Missense_Mutation_p.G173C	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	447	Plastocyanin-like 3.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	CCCAGGATGCCAAGATGCTCT	0.443			NA											49	48					1.86277e-20	2.72998e-20	0.00361	1	0
GOLIM4	27333	broad.mit.edu	37	3	167728113	167728113	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:167728113C>A	uc003ffe.2	-	16	2379	c.2035G>T	c.(2035-2037)GAG>TAG	p.E679*	GOLIM4_uc011bpe.1_Nonsense_Mutation_p.E680*|GOLIM4_uc011bpf.1_Nonsense_Mutation_p.E652*|GOLIM4_uc011bpg.1_Nonsense_Mutation_p.E651*	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	679	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						tcttcttcctcctcttcttcc	0.403			NA											84	153					5.72486e-32	8.93038e-32	0.00361	1	0
MECOM	2122	broad.mit.edu	37	3	168830606	168830606	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:168830606C>A	uc003ffi.3	-	8	2251	c.1982G>T	c.(1981-1983)AGG>ATG	p.R661M	MECOM_uc010hwk.1_Missense_Mutation_p.R684M|MECOM_uc003ffj.3_Missense_Mutation_p.R726M|MECOM_uc011bpi.1_Missense_Mutation_p.R662M|MECOM_uc003ffn.3_Missense_Mutation_p.R661M|MECOM_uc003ffk.2_Missense_Mutation_p.R661M|MECOM_uc003ffl.2_Missense_Mutation_p.R821M|MECOM_uc011bpj.1_Missense_Mutation_p.R849M|MECOM_uc011bpk.1_Missense_Mutation_p.R651M|MECOM_uc010hwn.2_Missense_Mutation_p.R849M	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	661					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TGGAGAAGGCCTCAAGTATTT	0.368			NA											49	129					4.44712e-29	6.87569e-29	0.00361	1	0
MECOM	2122	broad.mit.edu	37	3	168830608	168830608	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:168830608C>A	uc003ffi.3	-	8	2249	c.1980G>T	c.(1978-1980)TTG>TTT	p.L660F	MECOM_uc010hwk.1_Missense_Mutation_p.L683F|MECOM_uc003ffj.3_Missense_Mutation_p.L725F|MECOM_uc011bpi.1_Missense_Mutation_p.L661F|MECOM_uc003ffn.3_Missense_Mutation_p.L660F|MECOM_uc003ffk.2_Missense_Mutation_p.L660F|MECOM_uc003ffl.2_Missense_Mutation_p.L820F|MECOM_uc011bpj.1_Missense_Mutation_p.L848F|MECOM_uc011bpk.1_Missense_Mutation_p.L650F|MECOM_uc010hwn.2_Missense_Mutation_p.L848F	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	660					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GAGAAGGCCTCAAGTATTTCT	0.363			NA											49	126					4.44712e-29	6.87569e-29	0.00361	1	0
MCCC1	56922	broad.mit.edu	37	3	182775145	182775145	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:182775145C>A	uc003fle.2	-	8	964	c.827G>T	c.(826-828)TGT>TTT	p.C276F	MCCC1_uc010hxi.2_RNA|MCCC1_uc011bqo.1_RNA|MCCC1_uc003flf.2_Missense_Mutation_p.C159F|MCCC1_uc003flg.2_Missense_Mutation_p.C167F|MCCC1_uc011bqp.1_Missense_Mutation_p.C229F|MCCC1_uc011bqq.1_Missense_Mutation_p.C167F	NM_020166	NP_064551	Q96RQ3	MCCA_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	276	Biotin carboxylation.|ATP-grasp.				biotin metabolic process|leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.84e-14)|Ovarian(172;0.0355)		all cancers(12;1.8e-44)|Epithelial(37;3.23e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;5.07e-21)		Biotin(DB00121)	CTGCACACTACAGTCTCTTTC	0.413			NA											9	23					1.76689e-08	2.15186e-08	0.006214	1	0
ATP13A5	344905	broad.mit.edu	37	3	193052754	193052754	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:193052754C>A	uc011bsq.1	-	10	1078	c.1078G>T	c.(1078-1080)GGG>TGG	p.G360W		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	360					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		GGCCCCTGCCCAGAGGGCTTG	0.458			NA											61	33					9.4991e-31	1.47651e-30	0.00361	1	0
LRRC15	131578	broad.mit.edu	37	3	194081122	194081122	+	Silent	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr3:194081122A>G	uc003ftu.2	-	2	737	c.651T>C	c.(649-651)TTT>TTC	p.F217F	LRRC15_uc003ftt.2_Silent_p.F223F	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	217	Extracellular (Potential).|LRR 7.					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CAAGCCCATCAAAAGTGCCCA	0.567			NA											119	95					0	0	0.00361	0	0
RNF212	285498	broad.mit.edu	37	4	1073435	1073435	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:1073435C>A	uc003gcj.2	-	8	836	c.506G>T	c.(505-507)AGA>ATA	p.R169I	RNF212_uc003gch.2_Missense_Mutation_p.R11I|RNF212_uc003gci.2_Missense_Mutation_p.R169I|RNF212_uc010ibp.2_Intron|RNF212_uc010ibq.2_Intron	NM_001131034	NP_001124506	Q495C1	RN212_HUMAN	ring finger protein 212 isoform a	169							zinc ion binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (64;0.151)		ACTTACTTTTCTAATCGGAGA	0.453			NA											19	95					1.67942e-08	2.04818e-08	0.006122	1	0
HTT	3064	broad.mit.edu	37	4	3176790	3176790	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:3176790C>T	uc011bvq.1	+	34	4514	c.4369C>T	c.(4369-4371)CTG>TTG	p.L1457L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1455					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GCTGGCGCAGCTGGTTCAGTT	0.373			NA											27	81					0	0	0.00632	0	0
RGS12	6002	broad.mit.edu	37	4	3441279	3441279	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:3441279G>C	uc003ggw.2	+	18	5116	c.4212G>C	c.(4210-4212)GCG>GCC	p.A1404A	RGS12_uc003ggz.2_Silent_p.A756A|RGS12_uc003gha.2_Silent_p.A746A|RGS12_uc010icv.2_Silent_p.A603A|HGFAC_uc003ghc.2_5'Flank|HGFAC_uc010icw.2_5'Flank	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	1404						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GTGGCATAGCGGGGGCACAGG	0.662			NA											13	49					0	0	0.00245	0	0
OTOP1	133060	broad.mit.edu	37	4	4190608	4190608	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:4190608G>T	uc003ghp.1	-	6	1791	c.1761C>A	c.(1759-1761)GTC>GTA	p.V587V		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	587	Helical; (Potential).				biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TGGCCAGGTTGACCACAATTA	0.473			NA											12	151					1.3612e-06	1.57842e-06	0.003163	1	0
STK32B	55351	broad.mit.edu	37	4	5141635	5141635	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:5141635A>T	uc003gih.1	+	2	120	c.56A>T	c.(55-57)AAC>ATC	p.N19I	STK32B_uc010ida.1_5'UTR	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	19							ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TTTGCAGTCAACTTTGACCAT	0.383			NA											5	165					0	0	0.001168	0	0
EVC2	132884	broad.mit.edu	37	4	5624461	5624461	+	Silent	SNP	C	C	A	rs139936564	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:5624461C>A	uc003gij.2	-	14	2358	c.2304G>T	c.(2302-2304)GTG>GTT	p.V768V	EVC2_uc011bwb.1_Silent_p.V208V|EVC2_uc003gik.2_Silent_p.V688V	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	768	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						AGAGCCAGGGCACCCCACGCT	0.647			NA											10	37					0.000978159	0.00105826	0.000978	1	0
MAN2B2	23324	broad.mit.edu	37	4	6578375	6578375	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:6578375G>T	uc003gjf.1	+	2	245	c.209G>T	c.(208-210)CGC>CTC	p.R70L	MAN2B2_uc003gje.1_Missense_Mutation_p.R70L|MAN2B2_uc011bwf.1_Missense_Mutation_p.R70L	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	70					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						GGCCAGCAGCGCCGGTTCATC	0.627			NA											13	70					3.27435e-08	3.94915e-08	0.00245	1	0
LDB2	9079	broad.mit.edu	37	4	16513703	16513703	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:16513703G>C	uc003goz.2	-	6	956	c.640C>G	c.(640-642)CAG>GAG	p.Q214E	LDB2_uc003gpa.2_Missense_Mutation_p.Q214E|LDB2_uc003gpb.2_Missense_Mutation_p.Q214E|LDB2_uc011bxh.1_Missense_Mutation_p.Q186E|LDB2_uc010iee.2_Missense_Mutation_p.Q214E|LDB2_uc003goy.2_Missense_Mutation_p.Q90E|LDB2_uc011bxi.1_Missense_Mutation_p.Q90E	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	214							LIM domain binding|transcription cofactor activity				0						ATCAGTTCCTGCATTGGCTCC	0.438			NA											17	50					0	0	0.00499	0	0
SLIT2	9353	broad.mit.edu	37	4	20530581	20530581	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:20530581A>G	uc003gpr.1	+	16	1676	c.1472A>G	c.(1471-1473)GAT>GGT	p.D491G	SLIT2_uc003gps.1_Missense_Mutation_p.D483G	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	491					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGTACAGAAGATTATCGATCA	0.353			NA											29	105					0	0	0.002836	0	0
GPR125	166647	broad.mit.edu	37	4	22422577	22422577	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:22422577C>T	uc003gqm.1	-	12	2006	c.1741G>A	c.(1741-1743)GGA>AGA	p.G581R	GPR125_uc010ieo.1_Missense_Mutation_p.G455R|GPR125_uc003gqn.1_Missense_Mutation_p.G355R|GPR125_uc003gqo.2_Missense_Mutation_p.G581R	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	581	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				TCCAGGTTTCCCTCTGGATCC	0.458			NA											165	316					0	0	0.00361	0	0
LGI2	55203	broad.mit.edu	37	4	25005746	25005746	+	Missense_Mutation	SNP	C	C	T	rs149130054		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:25005746C>T	uc003grf.2	-	8	1064	c.965G>A	c.(964-966)CGC>CAC	p.R322H		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	322	EAR 3.					extracellular region					0		Breast(46;0.173)				CTTGGAAATGCGAGAGACCTC	0.468			NA											5	172					0	0	0.000602	0	0
TLR1	7096	broad.mit.edu	37	4	38798855	38798855	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:38798855C>G	uc003gtl.2	-	4	1872	c.1598G>C	c.(1597-1599)GGA>GCA	p.G533A		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	533	Extracellular (Potential).|LRRCT.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						GACAAATTCTCCTAGCTCACA	0.433	GBM(5;216 373 40795 46382)		NA											5	418					0	0	0.001984	0	0
RFC1	5981	broad.mit.edu	37	4	39310388	39310388	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:39310388G>C	uc003gty.1	-	13	1887	c.1753C>G	c.(1753-1755)CTC>GTC	p.L585V	RFC1_uc003gtx.1_Missense_Mutation_p.L585V	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	585					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						TCCACCCAGAGCAAATTTTCC	0.488	Colon(109;59 1555 12203 17579 39824)|Esophageal Squamous(18;360 542 16186 28570 51157)		NA											4	270					0	0	0.009096	0	0
BEND4	389206	broad.mit.edu	37	4	42145827	42145827	+	Missense_Mutation	SNP	C	C	G	rs139053577	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:42145827C>G	uc003gwn.2	-	3	1252	c.672G>C	c.(670-672)CAG>CAC	p.Q224H	BEND4_uc003gwm.2_Missense_Mutation_p.Q224H|BEND4_uc011byy.1_Missense_Mutation_p.Q224H	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	224											0						TGTCTGAGGTCTGACTGTGGA	0.438			NA											8	47					0	0	0.00308	0	0
GABRB1	2560	broad.mit.edu	37	4	47163293	47163293	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:47163293C>A	uc003gxh.2	+	4	642	c.268C>A	c.(268-270)CAG>AAG	p.Q90K	GABRB1_uc011bze.1_Missense_Mutation_p.Q20K	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	90	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GTATTTCCAGCAGTCTTGGAA	0.363			NA											26	98					4.26978e-12	5.6073e-12	0.00333	1	0
NIPAL1	152519	broad.mit.edu	37	4	48037822	48037822	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:48037822C>A	uc003gxw.2	+	6	932	c.866C>A	c.(865-867)ACA>AAA	p.T289K		NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	289	Helical; (Potential).					integral to membrane					0						TCAGTAACTACACAGATTAAC	0.423			NA											18	53					1.99824e-07	2.3707e-07	0.00499	1	0
TEC	7006	broad.mit.edu	37	4	48152932	48152932	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:48152932C>T	uc003gxz.2	-	10	911	c.820G>A	c.(820-822)GAT>AAT	p.D274N		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	274	SH2.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						TGACTGGAATCCCTTACCATA	0.333			NA											34	125					0	0	0.004878	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68788579	68788579	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:68788579C>T	uc003hdr.1	-	7	716	c.595G>A	c.(595-597)GCG>ACG	p.A199T	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.A196T	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	199	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity	p.A199V(1)		skin(1)	1						GGCCAGGCCGCCTTGGGTGCA	0.433	NSCLC(26;2 894 10941 14480 22546)		NA											17	37					0	0	0.004007	0	0
AFF1	4299	broad.mit.edu	37	4	88029353	88029353	+	Silent	SNP	C	C	T	rs146991025	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:88029353C>T	uc003hqj.3	+	10	1805	c.1398C>T	c.(1396-1398)TCC>TCT	p.S466S	AFF1_uc011ccz.1_Silent_p.S473S|AFF1_uc003hqk.3_Silent_p.S466S|AFF1_uc011cda.1_Silent_p.S104S	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	466						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		CAGCACATTCCAGCAGTGCAG	0.473			NA											28	34					0	0	0.00632	0	0
METAP1	23173	broad.mit.edu	37	4	99962203	99962203	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:99962203G>A	uc003huf.3	+	6	559	c.442G>A	c.(442-444)GAA>AAA	p.E148K	METAP1_uc003hug.2_RNA	NM_015143	NP_055958	P53582	AMPM1_HUMAN	methionyl aminopeptidase 1	148					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis|regulation of translation	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;3.12e-07)		GCTTGCTAGAGAAGTTTTGGA	0.353			NA											7	15					0	0	0.00308	0	0
EGF	1950	broad.mit.edu	37	4	110925712	110925712	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:110925712C>G	uc003hzy.3	+	22	3677	c.3225C>G	c.(3223-3225)AGC>AGG	p.S1075R	EGF_uc011cfu.1_Missense_Mutation_p.S1033R|EGF_uc011cfv.1_Missense_Mutation_p.S1034R|EGF_uc010imk.2_Missense_Mutation_p.S223R	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	1075	Cytoplasmic (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	AGGAGTCGAGCAGAGATGTGA	0.453			NA											38	55					0	0	0.004289	0	0
SYNPO2	171024	broad.mit.edu	37	4	119944675	119944675	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:119944675T>A	uc003icm.3	+	2	392	c.196T>A	c.(196-198)TAC>AAC	p.Y66N	SYNPO2_uc010ina.2_Missense_Mutation_p.Y66N|SYNPO2_uc010inb.2_Missense_Mutation_p.Y66N|SYNPO2_uc011cgh.1_Missense_Mutation_p.Y66N|SYNPO2_uc010inc.2_5'UTR	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	66	PDZ.					nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AGATCTCACCTACCCTGAAGT	0.453			NA											29	34					0	0	0.009535	0	0
RXFP1	59350	broad.mit.edu	37	4	159493974	159493974	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:159493974T>C	uc003ipz.2	+	2	256	c.174T>C	c.(172-174)GAT>GAC	p.D58D	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_5'UTR|RXFP1_uc010iqo.2_Silent_p.D58D|RXFP1_uc011cjb.1_5'UTR|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_5'UTR|RXFP1_uc011cjd.1_5'UTR|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Silent_p.D58D|RXFP1_uc010iqm.2_Silent_p.D58D|RXFP1_uc011cjf.1_5'UTR|RXFP1_uc010iqn.2_Intron	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	58	Extracellular (Potential).|LDL-receptor class A.	Calcium.				integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ATCAGGCCGATGAGGACAACT	0.532			NA											11	52					0	0	0.000978	0	0
GPM6A	2823	broad.mit.edu	37	4	176622818	176622818	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:176622818G>T	uc003iuf.2	-	2	942	c.138C>A	c.(136-138)TGC>TGA	p.C46*	GPM6A_uc011ckj.1_Nonsense_Mutation_p.C39*|GPM6A_uc003iug.2_Nonsense_Mutation_p.C46*|GPM6A_uc003iuh.2_Nonsense_Mutation_p.C35*	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	46	Extracellular (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		CTTCATGACCGCAGCCACAGA	0.493			NA											35	61					6.05902e-23	9.01615e-23	0.003755	1	0
ODZ3	55714	broad.mit.edu	37	4	183603130	183603130	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:183603130G>T	uc003ivd.1	+	10	2035	c.1998G>T	c.(1996-1998)ACG>ACT	p.T666T	ODZ3_uc003ive.1_Silent_p.T72T	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	666	EGF-like 5.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GCTCCTGCACGTGTGACCCTA	0.473			NA											22	34					9.57634e-11	1.22263e-10	0.00333	1	0
CYP4V2	285440	broad.mit.edu	37	4	187130045	187130045	+	Missense_Mutation	SNP	G	G	C	rs58584561		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:187130045G>C	uc003iyw.3	+	9	1421	c.1117G>C	c.(1117-1119)GAA>CAA	p.E373Q	CYP4V2_uc010ism.2_RNA	NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	373					response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		CGCTACAGTAGAAGACCTGAA	0.458			NA											39	77					0	0	0.005524	0	0
SLC12A7	10723	broad.mit.edu	37	5	1085503	1085503	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:1085503T>A	uc003jbu.2	-	7	827	c.761A>T	c.(760-762)TAC>TTC	p.Y254F		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	254	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GCACGTGCCGTACACACGCAT	0.647			NA											4	24					0	0	0.009096	0	0
IRX2	153572	broad.mit.edu	37	5	2749627	2749627	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:2749627T>A	uc003jda.2	-	2	766	c.524A>T	c.(523-525)GAG>GTG	p.E175V	C5orf38_uc003jdc.2_5'Flank|C5orf38_uc011cmg.1_5'Flank|C5orf38_uc011cmh.1_5'Flank|C5orf38_uc011cmi.1_5'Flank|C5orf38_uc011cmj.1_5'Flank|IRX2_uc003jdb.2_Missense_Mutation_p.E175V	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	175	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		CATCTTGTTCTCCTTCTTGAG	0.602			NA											32	130					0	0	0.004289	0	0
ADCY2	108	broad.mit.edu	37	5	7690890	7690890	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:7690890G>T	uc003jdz.1	+	5	874	c.807G>T	c.(805-807)GCG>GCT	p.A269A	ADCY2_uc011cmo.1_Silent_p.A89A	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	269	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GCCCCAAGGCGGGCCAGATGG	0.582			NA											19	74					2.4624e-09	3.06744e-09	0.008871	1	0
SEMA5A	9037	broad.mit.edu	37	5	9227044	9227044	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:9227044C>G	uc003jek.2	-	7	1081	c.369G>C	c.(367-369)GTG>GTC	p.V123V		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	123	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GGTCGCCACCCACCAGAAGCA	0.393			NA											5	120					0	0	0.001168	0	0
CTNND2	1501	broad.mit.edu	37	5	11732329	11732329	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:11732329C>A	uc003jfa.1	-	2	238	c.93G>T	c.(91-93)CTG>CTT	p.L31L	CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	31					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGCCGGGGCTCAGGGAACTCG	0.502			NA											41	147					1.96642e-18	2.82026e-18	0.006999	1	0
CDH10	1008	broad.mit.edu	37	5	24487955	24487955	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:24487955G>A	uc003jgr.1	-	12	2516	c.2184C>T	c.(2182-2184)CCC>CCT	p.P728P	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	728	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGTCGTAGGGGGGTGCGGTGG	0.453			NA								HNSCC(23;0.051)			14	211					0	0	0.00245	0	0
CDH6	1004	broad.mit.edu	37	5	31294121	31294121	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:31294121G>T	uc003jhe.1	+	3	607	c.281G>T	c.(280-282)GGA>GTA	p.G94V	CDH6_uc003jhd.1_Missense_Mutation_p.G94V	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	94	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ATCCTTTCAGGAGATGGAGCA	0.393			NA											43	153					9.84934e-19	1.41726e-18	0.002522	1	0
NPR3	4883	broad.mit.edu	37	5	32712584	32712584	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:32712584C>A	uc003jhv.2	+	1	920	c.702C>A	c.(700-702)TAC>TAA	p.Y234*	NPR3_uc010iuo.2_Intron|NPR3_uc011cnz.1_Intron|NPR3_uc003jhu.2_Nonsense_Mutation_p.Y234*	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	234	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	CGTCCATCTACAGTTTCGACG	0.607			NA											54	197					3.50607e-19	5.05337e-19	0.00361	1	0
ADAMTS12	81792	broad.mit.edu	37	5	33596156	33596156	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:33596156C>T	uc003jia.1	-	17	2700	c.2537G>A	c.(2536-2538)CGC>CAC	p.R846H	ADAMTS12_uc010iuq.1_Missense_Mutation_p.R761H	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	846	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GGCAGTTTGGCGGCGGATACC	0.517			NA								HNSCC(64;0.19)			13	178					0	0	0.001855	0	0
PRLR	5618	broad.mit.edu	37	5	35065590	35065590	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:35065590C>G	uc003jjm.2	-	10	2000	c.1470G>C	c.(1468-1470)ACG>ACC	p.T490T	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Silent_p.T389T	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	490	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCAGCCAGGGCGTATCCTGGT	0.483			NA											82	173					0	0	0.00361	0	0
C9	735	broad.mit.edu	37	5	39341300	39341300	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:39341300A>G	uc003jlv.3	-	4	513	c.424T>C	c.(424-426)TGC>CGC	p.C142R		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	142	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			CTGTCTCTGCAGGGGGGACGG	0.463			NA											13	224					0	0	0.001368	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382476	41382476	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:41382476T>C	uc003jmm.1	-	2	366	c.264A>G	c.(262-264)CTA>CTG	p.L88L		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	88	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						TTCCAGCTCCTAGCTGGCCAG	0.438			NA											13	134					0	0	0.00245	0	0
FBXO4	26272	broad.mit.edu	37	5	41927303	41927303	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:41927303G>T	uc003jmq.2	+	2	434	c.378G>T	c.(376-378)AAG>AAT	p.K126N	FBXO4_uc003jmp.2_Missense_Mutation_p.K126N|FBXO4_uc003jmr.2_Missense_Mutation_p.K126N	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	126					positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				TCTTAAAAAAGCCTATATCTG	0.343			NA											32	171					2.09667e-21	3.09356e-21	0.003755	1	0
GZMK	3003	broad.mit.edu	37	5	54326301	54326301	+	Silent	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:54326301A>T	uc003jpl.1	+	3	296	c.252A>T	c.(250-252)GCA>GCT	p.A84A		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	84	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TTTTAGGCGCACACTCTCTCT	0.413			NA											24	55					0	0	0.00278	0	0
CD180	4064	broad.mit.edu	37	5	66479315	66479315	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:66479315G>A	uc003juy.2	-	3	1504	c.1356C>T	c.(1354-1356)CTC>CTT	p.L452L		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	452	Extracellular (Potential).|LRR 15.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		AGCAGTAAGTGAGATTCAGAA	0.453			NA											8	159					0	0	0.006214	0	0
F2R	2149	broad.mit.edu	37	5	76029252	76029252	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:76029252G>T	uc003ken.3	+	2	1467	c.1202G>T	c.(1201-1203)GGG>GTG	p.G401V		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	401	Cytoplasmic (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	AACAGCAGTGGGCAGTTGATG	0.428			NA											30	49					1.62565e-12	2.15108e-12	0.002445	1	0
JMY	133746	broad.mit.edu	37	5	78612080	78612080	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:78612080G>C	uc003kfx.3	+	10	3437	c.2917G>C	c.(2917-2919)GAG>CAG	p.E973Q		NM_152405	NP_689618	Q8N9B5	JMY_HUMAN	junction-mediating and regulatory protein	973					'de novo' actin filament nucleation|actin polymerization-dependent cell motility|Arp2/3 complex-mediated actin nucleation|cell cycle arrest|DNA repair|induction of apoptosis|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	cell leading edge|cytoplasm|cytoskeleton|nucleus	actin binding|transcription coactivator activity				0		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;4.45e-45)|Epithelial(54;5.85e-40)|all cancers(79;2.89e-35)		AGCATCCCCAGAGTCAGAGGA	0.433			NA											4	9					0	0	0.009096	0	0
CMYA5	202333	broad.mit.edu	37	5	79031289	79031289	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:79031289C>G	uc003kgc.2	+	2	6773	c.6701C>G	c.(6700-6702)GCT>GGT	p.A2234G		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2234						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAGAAACCAGCTGATCATTCA	0.388			NA											34	128					0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	5	79655242	79655242	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:79655242C>T	uc003kgo.2	-	1	666	c.503G>A	c.(502-504)CGT>CAT	p.R168H						SubName: Full=Putative uncharacterized protein; Flags: Fragment;												NA						accacctccacgaccaccacc	0.214			NA											5	52					0	0	0.000602	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79855521	79855521	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:79855521C>A	uc010jam.2	-	4	668	c.318G>T	c.(316-318)AAG>AAT	p.K106N	ANKRD34B_uc003kgw.2_Missense_Mutation_p.K106N|ANKRD34B_uc010jan.2_Missense_Mutation_p.K106N	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	106	ANK 3.					cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		CAGCCCCACTCTTGAGGAGCA	0.448			NA											46	75					3.05275e-18	4.37109e-18	0.003214	1	0
TTC37	9652	broad.mit.edu	37	5	94839593	94839593	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:94839593G>A	uc003klb.2	-	31	3412	c.3142C>T	c.(3142-3144)CTT>TTT	p.L1048F		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	1048	TPR 17.						binding			ovary(3)|pancreas(1)	4						AACACTTCAAGGGGTGTTGAC	0.363			NA											18	42					0	0	0.008871	0	0
MAN2A1	4124	broad.mit.edu	37	5	109051926	109051926	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:109051926C>T	uc003kou.1	+	3	1459	c.496C>T	c.(496-498)CTT>TTT	p.L166F		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	166	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		CACTGAACCCCTTCAAGTCTT	0.388			NA											33	49					0	0	0.002445	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111531407	111531407	+	Splice_Site	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:111531407T>C	uc003kpv.1	-	16	1651	c.1377_splice	c.e16-1	p.R459_splice	EPB41L4A_uc003kpp.1_Splice_Site_p.R86_splice	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4							cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TGGGCTTTCCTGTGAAAACAA	0.368			NA											12	22					0	0	0.000978	0	0
PRR16	51334	broad.mit.edu	37	5	120022181	120022181	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:120022181T>C	uc003ksq.2	+	2	855	c.692T>C	c.(691-693)GTC>GCC	p.V231A	PRR16_uc003ksp.2_Missense_Mutation_p.V208A|PRR16_uc003ksr.2_Missense_Mutation_p.V161A	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	231	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		AACAGGGAGGTCCACTTACAC	0.507			NA											13	35					0	0	0.001855	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503842	140503842	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:140503842G>A	uc003lip.1	+	1	2262	c.2262G>A	c.(2260-2262)CTG>CTA	p.L754L		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	754	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGTGTGTCTGACAGGAGACT	0.572			NA											70	82					0	0	0.00361	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590281	140590281	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:140590281G>T	uc003liz.2	+	1	1991	c.1802G>T	c.(1801-1803)TGG>TTG	p.W601L	PCDHB12_uc011dak.1_Missense_Mutation_p.W264L	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	601	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGAACGCCTGGCTGTCGTAC	0.721			NA											22	193					3.65163e-15	5.03832e-15	0.00632	1	0
PCDHGA1	56114	broad.mit.edu	37	5	140712360	140712360	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:140712360C>G	uc003lji.1	+	1	2109	c.2109C>G	c.(2107-2109)GTC>GTG	p.V703V	PCDHGA1_uc011dan.1_Silent_p.V703V	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	703	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTCCTGCGTCTTCCTGGCCT	0.672			NA											67	57					0	0	0.00361	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724427	140724427	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:140724427A>C	uc003ljm.1	+	1	827	c.827A>C	c.(826-828)CAA>CCA	p.Q276P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.Q36P|PCDHGA3_uc011dap.1_Missense_Mutation_p.Q276P	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	276	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCAATGCTCAAGTGTCTTAT	0.448			NA											24	19					0	0	0.002299	0	0
PDGFRB	5159	broad.mit.edu	37	5	149501587	149501587	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:149501587C>A	uc003lro.2	-	16	2669	c.2200G>T	c.(2200-2202)GGG>TGG	p.G734W	PDGFRB_uc010jhd.2_Missense_Mutation_p.G573W	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	734	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TCGCTCTCCCCGGTCAAGGAC	0.562			NA	T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								19	22					2.4624e-09	3.06744e-09	0.008871	1	0
NIPAL4	348938	broad.mit.edu	37	5	156895745	156895745	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:156895745T>A	uc003lwx.3	+	4	652	c.536T>A	c.(535-537)GTT>GAT	p.V179D	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Missense_Mutation_p.V160D|NIPAL4_uc010jin.1_3'UTR	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	179	Helical; (Potential).					integral to membrane	receptor activity				0						GCTGGAGAAGTTGCCAACTTT	0.522			NA											59	52					0	0	0.00361	0	0
SLIT3	6586	broad.mit.edu	37	5	168098301	168098301	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:168098301G>T	uc003mab.2	-	34	4449	c.4029C>A	c.(4027-4029)TGC>TGA	p.C1343*	SLIT3_uc010jjg.2_Nonsense_Mutation_p.C1350*	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1343	EGF-like 7.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCACGGAGCGGCACAGGCCGT	0.677	Ovarian(29;311 847 10864 17279 24903)		NA											15	23					0.000566183	0.00061714	0.00499	1	0
FAM153B	202134	broad.mit.edu	37	5	175528581	175528581	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:175528581G>T	uc003mdk.2	+	12	718	c.661G>T	c.(661-663)GAA>TAA	p.E221*		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134	221										ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		CACACTGGCCGAACGTACGTA	0.463			NA											51	106					2.27459e-33	3.56735e-33	0.00361	1	0
FGFR4	2264	broad.mit.edu	37	5	176520201	176520201	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr5:176520201G>T	uc003mfl.2	+	9	1287	c.1120G>T	c.(1120-1122)GCG>TCG	p.A374S	FGFR4_uc003mfm.2_Missense_Mutation_p.A374S|FGFR4_uc011dfu.1_Intron|FGFR4_uc011dfw.1_3'UTR|FGFR4_uc003mfo.2_Intron	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	374	Helical; (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	CATCCTGTACGCGTCGGGCTC	0.682			NA								TSP Lung(9;0.080)			4	22					1.23904e-05	1.405e-05	0.000602	1	0
BPHL	670	broad.mit.edu	37	6	3137679	3137680	+	Missense_Mutation	DNP	TG	TG	CT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:3137679_3137680TG>CT	uc003mva.2	+	5	665_666	c.616_617TG>CT	c.(616-618)TGT>CTT	p.C206L	BPHL_uc003muz.2_Intron|BPHL_uc011dht.1_Intron|BPHL_uc003muy.2_Missense_Mutation_p.C189L	NM_004332	NP_004323	Q86WA6	BPHL_HUMAN	biphenyl hydrolase-like precursor	206					cellular amino acid metabolic process|response to toxin	mitochondrion	hydrolase activity				0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				TGCCAGAACCTGTGAAAAGTGG	0.465			NA											25	159					0	0	0.004672	0	0
GMPR	2766	broad.mit.edu	37	6	16274679	16274679	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:16274679G>C	uc003nbs.2	+	5	613	c.499G>C	c.(499-501)GAG>CAG	p.E167Q		NM_006877	NP_006868	P36959	GMPR1_HUMAN	guanosine monophosphate reductase	167					nucleotide metabolic process|purine base metabolic process|purine-containing compound salvage|response to cold	cytosol	GMP reductase activity|metal ion binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.103)	all_hematologic(90;0.0895)				AATGGTAGAAGAGCTTATTCT	0.473			NA											3	122					0	0	0.004672	0	0
RBM24	221662	broad.mit.edu	37	6	17283081	17283081	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:17283081C>A	uc003nbz.3	+	2	218	c.214C>A	c.(214-216)CCC>ACC	p.P72T	RBM24_uc003nby.3_Missense_Mutation_p.P72T|RBM24_uc011dix.1_Missense_Mutation_p.P14T|RBM24_uc003nca.2_Missense_Mutation_p.P27T	NM_001143942	NP_001137414	Q9BX46	RBM24_HUMAN	RNA binding motif protein 24 isoform 1	72	RRM.				cell differentiation|regulation of mRNA stability|regulation of myotube differentiation	cytoplasm|nucleus	mRNA 3'-UTR binding|nucleotide binding			ovary(1)|skin(1)	2	Breast(50;0.0615)|Ovarian(93;0.0733)	all_hematologic(90;0.062)	all cancers(50;0.131)|Epithelial(50;0.15)			CTGCAAGGATCCCAATCCCAT	0.493			NA											24	54					1.1804e-14	1.61333e-14	0.003954	1	0
NRSN1	140767	broad.mit.edu	37	6	24145935	24145935	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:24145935C>A	uc010jpq.1	+	4	586	c.349C>A	c.(349-351)CTG>ATG	p.L117M		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	117					nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						CATGTACAAGCTGGCAGGAGC	0.498			NA											27	73					1.17739e-12	1.56746e-12	0.005443	1	0
HIST1H1T	3010	broad.mit.edu	37	6	26107887	26107887	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:26107887C>A	uc003ngj.2	-	1	478	c.435G>T	c.(433-435)AAG>AAT	p.K145N		NM_005323	NP_005314	P22492	H1T_HUMAN	histone cluster 1, H1t	145					cell differentiation|multicellular organismal development|nucleosome assembly|spermatogenesis	nucleosome	DNA binding			ovary(2)	2						TTTTAGCAGTCTTTGGTGACT	0.463			NA											95	134					5.48297e-45	8.77275e-45	0.00361	1	0
HIST1H4E	8367	broad.mit.edu	37	6	26204885	26204885	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:26204885G>T	uc003ngy.2	+	1	13	c.13G>T	c.(13-15)GGC>TGC	p.G5C		NM_003545	NP_003536	P62805	H4_HUMAN	histone cluster 1, H4e	5					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1		all_hematologic(11;0.196)				GTCTGGTCGCGGCAAAGGCGG	0.517			NA											45	94					4.00472e-15	5.50807e-15	0.00361	1	0
PRSS16	10279	broad.mit.edu	37	6	27222627	27222627	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:27222627G>C	uc003nja.2	+	10	1318	c.1306G>C	c.(1306-1308)GCT>CCT	p.A436P	PRSS16_uc011dkt.1_RNA|PRSS16_uc003njb.2_Missense_Mutation_p.A179P|PRSS16_uc003njd.2_Intron	NM_005865	NP_005856	Q9NQE7	TSSP_HUMAN	protease, serine, 16 precursor	436					protein catabolic process|proteolysis	cytoplasmic membrane-bounded vesicle	serine-type peptidase activity			ovary(2)|central_nervous_system(2)|skin(1)	5						GACCCCTGGGGCTAACAAAGT	0.552	NSCLC(178;1118 2105 17078 23587 44429)		NA											14	177					0	0	0.001855	0	0
MRPS18B	28973	broad.mit.edu	37	6	30593315	30593315	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:30593315G>T	uc003nqo.2	+	7	675	c.518G>T	c.(517-519)CGG>CTG	p.R173L	MRPS18B_uc011dml.1_3'UTR|MRPS18B_uc010jsd.1_Missense_Mutation_p.R130L|C6orf134_uc003nqr.3_5'Flank|C6orf134_uc003rdc.2_5'Flank|C6orf134_uc003nqs.3_5'Flank|C6orf134_uc003rdd.2_5'Flank|C6orf134_uc003nqu.2_5'Flank|C6orf134_uc003nqt.2_5'Flank|C6orf134_uc011dmm.1_5'Flank|C6orf134_uc003nqv.2_5'Flank	NM_014046	NP_054765	Q9Y676	RT18B_HUMAN	mitochondrial ribosomal protein S18B precursor	173					translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome			ovary(1)	1						GTTGAACCACGGGACCTTGAC	0.502			NA											58	236					2.43698e-19	3.51904e-19	0.00361	1	0
LHFPL5	222662	broad.mit.edu	37	6	35773838	35773838	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:35773838G>T	uc003olg.1	+	1	768	c.391G>T	c.(391-393)GCA>TCA	p.A131S		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	131	Helical; (Potential).					integral to membrane				skin(1)	1						TAAGATCTGTGCATGGATGCA	0.587			NA											29	21					4.87955e-14	6.6071e-14	0.005443	1	0
DNAH8	1769	broad.mit.edu	37	6	38790760	38790760	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:38790760T>A	uc003ooe.1	+	25	3619	c.3019T>A	c.(3019-3021)TTT>ATT	p.F1007I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCTGCAGGACTTTCAGAAGTA	0.473			NA											36	21					0	0	0.006999	0	0
DNAH8	1769	broad.mit.edu	37	6	38919134	38919134	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:38919134T>A	uc003ooe.1	+	80	12238	c.11638T>A	c.(11638-11640)TAT>AAT	p.Y3880N	DNAH8_uc003oog.1_Missense_Mutation_p.Y329N|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGCAAGAAAGTATATTGCAGA	0.378			NA											124	101					0	0	0.00361	0	0
TREML4	285852	broad.mit.edu	37	6	41196631	41196631	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:41196631C>A	uc003oqc.2	+	2	347	c.243C>A	c.(241-243)TAC>TAA	p.Y81*	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	81	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					AGTCTCATTACACAATCTGGG	0.493			NA											51	38					2.0833e-19	3.01767e-19	0.00361	1	0
PTCRA	171558	broad.mit.edu	37	6	42893278	42893278	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:42893278G>A	uc003osx.2	+	4	785	c.704G>A	c.(703-705)GGG>GAG	p.G235E	PTCRA_uc010jxy.2_Missense_Mutation_p.G210E|PTCRA_uc010jxz.2_Missense_Mutation_p.G128E	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	235	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CCAGTATGGGGGGAAGGGTCT	0.647			NA											3	5					0	0	0.004672	0	0
CUL7	9820	broad.mit.edu	37	6	43014777	43014777	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:43014777C>T	uc003otq.2	-	10	2541	c.2238G>A	c.(2236-2238)CTG>CTA	p.L746L	CUL7_uc010jyg.2_5'Flank|CUL7_uc011dvb.1_Silent_p.L830L|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	746					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CCAGCTGATTCAGCACCACGG	0.567			NA											18	142					0	0	0.008871	0	0
COL19A1	1310	broad.mit.edu	37	6	70886415	70886415	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:70886415G>A	uc003pfc.1	+	42	2743	c.2626G>A	c.(2626-2628)GAT>AAT	p.D876N		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	876	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CCAACAGGGAGATCGAGGCCC	0.378			NA											5	44					0	0	0.000602	0	0
COX7A2	1347	broad.mit.edu	37	6	75950955	75950955	+	Silent	SNP	C	C	A	rs139079443		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:75950955C>A	uc003phv.1	-	2	120	c.45G>T	c.(43-45)ACG>ACT	p.T15T		NM_001865	NP_001856	P14406	CX7A2_HUMAN	cytochrome c oxidase subunit VIIa polypeptide 2	15						mitochondrial respiratory chain	cytochrome-c oxidase activity|electron carrier activity				0						CAGTGCTTATCGTCCTCTGCC	0.279			NA											98	103					7.59261e-44	1.21038e-43	0.00361	1	0
SNX14	57231	broad.mit.edu	37	6	86238049	86238049	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:86238049C>G	uc003pkr.2	-	20	2119	c.1926G>C	c.(1924-1926)AAG>AAC	p.K642N	SNX14_uc003pkp.2_Missense_Mutation_p.K505N|SNX14_uc003pkq.2_Missense_Mutation_p.K248N|SNX14_uc011dzg.1_Missense_Mutation_p.K590N|SNX14_uc003pks.2_Missense_Mutation_p.K589N|SNX14_uc003pkt.2_Missense_Mutation_p.K633N	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	642	PX.				cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		CAATGATCCTCTTAGAAGGAA	0.318			NA											91	98					0	0	0.00361	0	0
CNR1	1268	broad.mit.edu	37	6	88854965	88854965	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:88854965T>C	uc011dzq.1	-	2	3592	c.29A>G	c.(28-30)GAT>GGT	p.D10G	CNR1_uc010kbz.2_Missense_Mutation_p.D10G|CNR1_uc011dzr.1_Missense_Mutation_p.D10G|CNR1_uc011dzs.1_Missense_Mutation_p.D10G|CNR1_uc003pmq.3_Missense_Mutation_p.D10G|CNR1_uc011dzt.1_Missense_Mutation_p.D10G|CNR1_uc010kca.2_Missense_Mutation_p.D10G	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	10	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	GAAGGTGGTATCTGCAAGGCC	0.483			NA											60	58					0	0	0.00361	0	0
MAP3K7	6885	broad.mit.edu	37	6	91257081	91257081	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:91257081C>G	uc003pnz.1	-	11	1268	c.1106G>C	c.(1105-1107)GGA>GCA	p.G369A	MAP3K7_uc003poa.1_Missense_Mutation_p.G369A|MAP3K7_uc003pob.1_Missense_Mutation_p.G369A|MAP3K7_uc003poc.1_Missense_Mutation_p.G369A	NM_145331	NP_663304	O43318	M3K7_HUMAN	mitogen-activated protein kinase kinase kinase 7	369					activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|histone H3 acetylation|I-kappaB phosphorylation|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytosol|endosome membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)	6		all_cancers(76;6.4e-08)|Acute lymphoblastic leukemia(125;1.43e-09)|Prostate(29;9.32e-09)|all_hematologic(105;3.69e-06)|all_epithelial(107;0.000187)|Ovarian(999;0.0164)		OV - Ovarian serous cystadenocarcinoma(136;2.05e-11)|all cancers(137;3.25e-11)|GBM - Glioblastoma multiforme(226;0.0416)|BRCA - Breast invasive adenocarcinoma(108;0.0429)		ACGGGAGGCTCCCAAGCTTAA	0.473			NA											73	102					0	0	0.00361	0	0
TAAR8	83551	broad.mit.edu	37	6	132874098	132874098	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:132874098G>T	uc011ecj.1	+	1	267	c.267G>T	c.(265-267)ATG>ATT	p.M89I		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	89	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		TTTTCAGCATGGTCAGGACGG	0.458			NA											113	71					6.46527e-39	1.01948e-38	0.00361	1	0
ECT2L	345930	broad.mit.edu	37	6	139159550	139159550	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:139159550T>A	uc003qif.1	+	3	344	c.241T>A	c.(241-243)TTA>ATA	p.L81I	ECT2L_uc011edq.1_Missense_Mutation_p.L12I	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	81	F-box.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						CTCTACAGTGTTACCACGCTT	0.403			NA											11	52					0	0	0.001855	0	0
VTA1	51534	broad.mit.edu	37	6	142510618	142510618	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:142510618T>C	uc003qiw.2	+	5	482	c.467T>C	c.(466-468)TTA>TCA	p.L156S	VTA1_uc011edt.1_RNA|VTA1_uc011edu.1_Missense_Mutation_p.L98S	NM_016485	NP_057569	Q9NP79	VTA1_HUMAN	Vps20-associated 1 homolog	156	Interaction with IST1.			CL -> V (in Ref. 3; AAF36148).	cellular membrane organization|endosome transport|protein transport	cytosol|endosome membrane	protein binding				0	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;1.34e-05)|GBM - Glioblastoma multiforme(68;0.00182)		CATAATTGTTTAAAGAATGGG	0.343			NA											58	37					0	0	0.00361	0	0
HIVEP2	3097	broad.mit.edu	37	6	143080987	143080987	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:143080987G>A	uc003qjd.2	-	9	7181	c.6438C>T	c.(6436-6438)CCC>CCT	p.P2146P		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2146	10 X 4 AA tandem repeats of S-P-[RGMKC]- [RK].|10.|Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		AAGCCCTTCTGGGAGATGGCG	0.463	Esophageal Squamous(107;843 1510 13293 16805 42198)		NA											54	39					0	0	0.00361	0	0
LATS1	9113	broad.mit.edu	37	6	150001196	150001196	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:150001196C>G	uc003qmu.1	-	5	2956	c.2408G>C	c.(2407-2409)AGT>ACT	p.S803T	LATS1_uc010kif.1_Missense_Mutation_p.S698T|LATS1_uc003qmv.1_Missense_Mutation_p.S803T	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	803	Protein kinase.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		TCGTGCCAGACTTTCTGGAAA	0.338			NA											14	112					0	0	0.001855	0	0
MYCT1	80177	broad.mit.edu	37	6	153019179	153019179	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:153019179A>G	uc003qpd.3	+	1	150	c.142A>G	c.(142-144)ATT>GTT	p.I48V	MYCT1_uc010kjc.1_Missense_Mutation_p.I48V|MYCT1_uc003qpc.3_Missense_Mutation_p.I48V	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	48						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		TCTTGTGGATATTATGGCTAA	0.313			NA											8	57					0	0	0.004482	0	0
TIAM2	26230	broad.mit.edu	37	6	155450561	155450561	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:155450561T>A	uc003qqb.2	+	6	1477	c.204T>A	c.(202-204)TTT>TTA	p.F68L	TIAM2_uc003qqe.2_Missense_Mutation_p.F68L	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	68					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TTTCTCACTTTAAGAGTAACC	0.547			NA											23	18					0	0	0.003954	0	0
NOX3	50508	broad.mit.edu	37	6	155728268	155728268	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:155728268G>C	uc003qqm.2	-	12	1679	c.1576C>G	c.(1576-1578)CCC>GCC	p.P526A		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	526	Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		CCTTACCTGGGGTGATTGTAG	0.488			NA											27	42					0	0	0.008361	0	0
C6orf118	168090	broad.mit.edu	37	6	165715189	165715189	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr6:165715189C>T	uc003qum.3	-	2	658	c.622G>A	c.(622-624)GGA>AGA	p.G208R	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	208											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CTGGTGGCTCCGGCCAGGTAG	0.602			NA											35	25					0	0	0.003271	0	0
MICALL2	79778	broad.mit.edu	37	7	1474755	1474755	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:1474755C>A	uc003skj.3	-	16	2767	c.2620G>T	c.(2620-2622)GAC>TAC	p.D874Y	MICALL2_uc003skh.3_Intron|MICALL2_uc003ski.3_Missense_Mutation_p.D361Y	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	874						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		TCAATCATGTCCCGCAGCATC	0.647			NA											28	107					4.2108e-06	4.84409e-06	0.009535	1	0
INTS1	26173	broad.mit.edu	37	7	1517560	1517560	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:1517560A>G	uc003skn.2	-	34	4744	c.4643T>C	c.(4642-4644)CTG>CCG	p.L1548P	INTS1_uc003skm.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1548					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CACCTCGATCAGCCCCTGGAG	0.647			NA											5	97					0	0	0.001168	0	0
INTS1	26173	broad.mit.edu	37	7	1536898	1536898	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:1536898C>A	uc003skn.2	-	11	1579	c.1478G>T	c.(1477-1479)CGG>CTG	p.R493L		NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	493					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CCGCGAGGCCCGCAGGTAGTC	0.652			NA											9	50					0.000274275	0.000300085	0.004482	1	0
MAD1L1	8379	broad.mit.edu	37	7	2255624	2255624	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:2255624C>T	uc003slh.1	-	9	1086	c.820G>A	c.(820-822)GAG>AAG	p.E274K	MAD1L1_uc003sle.1_Missense_Mutation_p.E3K|MAD1L1_uc003slf.1_Missense_Mutation_p.E274K|MAD1L1_uc003slg.1_Missense_Mutation_p.E274K|MAD1L1_uc010ksh.1_Missense_Mutation_p.E274K|MAD1L1_uc003sli.1_Missense_Mutation_p.E182K|MAD1L1_uc010ksi.1_Missense_Mutation_p.E227K|MAD1L1_uc010ksj.2_Missense_Mutation_p.E274K	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	274	Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		CCGTTGGTCTCTCTCATCTCC	0.612			NA											11	133					0	0	0.000978	0	0
SNX8	29886	broad.mit.edu	37	7	2303980	2303980	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:2303980C>A	uc003slw.2	-	6	778	c.735G>T	c.(733-735)CGG>CGT	p.R245R		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	245					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		TGTCGATGGCCCGCGATGCGA	0.577			NA											11	56					5.16669e-11	6.61579e-11	0.000978	1	0
FSCN1	6624	broad.mit.edu	37	7	5632887	5632887	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:5632887C>A	uc003sou.2	+	1	434	c.320C>A	c.(319-321)GCG>GAG	p.A107E		NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	107					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		CAGTCCGAGGCGCACCGGCGC	0.697			NA											10	19					0.00829132	0.00878497	0.008291	1	0
RNF216	54476	broad.mit.edu	37	7	5662683	5662684	+	Missense_Mutation	DNP	CG	CG	GC	rs139859373		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:5662683_5662684CG>GC	uc003soy.1	-	17	2598_2599	c.2408_2409CG>GC	c.(2407-2409)GCG>GGC	p.A803G	RNF216_uc010ksz.1_Missense_Mutation_p.A425G|RNF216_uc010kta.1_Missense_Mutation_p.A425G|RNF216_uc011jwj.1_Missense_Mutation_p.A425G|RNF216_uc003sox.1_Missense_Mutation_p.A860G	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	803	Pro-rich.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		AGGGTGGGTGCGCGAAGGCATA	0.663			NA											47	152					0	0	0.004672	0	0
RNF216	54476	broad.mit.edu	37	7	5752387	5752387	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:5752387G>A	uc003soy.1	-	12	1960	c.1770C>T	c.(1768-1770)GCC>GCT	p.A590A	RNF216_uc010ksz.1_Silent_p.A212A|RNF216_uc010kta.1_Silent_p.A212A|RNF216_uc011jwj.1_Silent_p.A212A|RNF216_uc003sox.1_Silent_p.A647A	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	590	IBR-type.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		CCTCCTCCTCGGCTTTTCGCT	0.562			NA											12	44					0	0	0.001855	0	0
COL28A1	340267	broad.mit.edu	37	7	7412926	7412926	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:7412926G>C	uc003src.1	-	32	2728	c.2611C>G	c.(2611-2613)CTG>GTG	p.L871V	COL28A1_uc011jxe.1_Missense_Mutation_p.L554V	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	871	VWFA 2.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCTTCCCCCAGATACTGCATG	0.478			NA											5	119					0	0	0.000602	0	0
THSD7A	221981	broad.mit.edu	37	7	11418709	11418709	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:11418709G>A	uc003ssf.3	-	25	5041	c.4789C>T	c.(4789-4791)CCA>TCA	p.P1597S	uc003ssb.2_Intron|THSD7A_uc003ssd.3_Missense_Mutation_p.P101S	NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1597	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GGCCCAAATGGCTGTAGAAAC	0.458			NA								HNSCC(18;0.044)			10	64					0	0	0.000978	0	0
DGKB	1607	broad.mit.edu	37	7	14378256	14378256	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:14378256C>A	uc003ssz.2	-	22	2196	c.2009G>T	c.(2008-2010)GGA>GTA	p.G670V	DGKB_uc011jxt.1_Missense_Mutation_p.G651V|DGKB_uc003sta.2_Missense_Mutation_p.G670V|DGKB_uc011jxu.1_Missense_Mutation_p.G669V	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	670					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	AAGATTGGATCCTCCATGCAT	0.403			NA											11	176					3.86212e-05	4.30661e-05	0.008291	1	0
DGKB	1607	broad.mit.edu	37	7	14797349	14797349	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:14797349T>A	uc003ssz.2	-	2	265	c.78A>T	c.(76-78)ACA>ACT	p.T26T	DGKB_uc011jxt.1_Silent_p.T26T|DGKB_uc003sta.2_Silent_p.T26T|DGKB_uc011jxu.1_Silent_p.T26T|DGKB_uc011jxv.1_Silent_p.T26T	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	26					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TTAATTTCTTTGTAGAATCTA	0.323			NA											11	87					0	0	0.000978	0	0
TMEM195	392636	broad.mit.edu	37	7	15430530	15430530	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:15430530C>G	uc003stb.1	-	7	847	c.677G>C	c.(676-678)GGC>GCC	p.G226A		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	226					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						ACGATTTCTGCCTATGAGACA	0.224			NA											13	24					0	0	0.004007	0	0
SNX13	23161	broad.mit.edu	37	7	17836494	17836494	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:17836494C>T	uc003stw.1	-	25	2828	c.2615G>A	c.(2614-2616)AGA>AAA	p.R872K	SNX13_uc003stv.2_Missense_Mutation_p.R861K|SNX13_uc010kuc.2_Missense_Mutation_p.R658K|SNX13_uc010kub.2_Missense_Mutation_p.R267K			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	872					cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					TACTCTTGTTCTCATTCGAAT	0.328			NA											92	168					0	0	0.00361	0	0
TMEM196	256130	broad.mit.edu	37	7	19761724	19761724	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:19761724G>T	uc011jyg.1	-	4	578	c.493C>A	c.(493-495)CAG>AAG	p.Q165K	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	171						integral to membrane					0						AATATCAGCTGTGGTCCTCCA	0.318			NA											13	128					1.02788e-11	1.33778e-11	0.00499	1	0
ITGB8	3696	broad.mit.edu	37	7	20421493	20421493	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:20421493C>T	uc003suu.2	+	6	1650	c.945C>T	c.(943-945)GTC>GTT	p.V315V	ITGB8_uc011jyh.1_Silent_p.V180V|ITGB8_uc003sut.2_Silent_p.V315V	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	315	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						ACGTCTATGTCAAATCGACAA	0.398			NA											49	24					0	0	0.00361	0	0
ABCB5	340273	broad.mit.edu	37	7	20762679	20762679	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:20762679C>G	uc003suw.3	+	12	1673	c.1127C>G	c.(1126-1128)ACT>AGT	p.T376S	ABCB5_uc010kuh.2_Missense_Mutation_p.T821S|ABCB5_uc003sux.1_5'UTR	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	376	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CAAAATGCAACTAACATGGGA	0.378			NA											11	142					0	0	0.001855	0	0
HOXA9	3205	broad.mit.edu	37	7	27203226	27203226	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:27203226T>C	uc003syt.2	-	2	888	c.815A>G	c.(814-816)GAG>GGG	p.E272G		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	272							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2						ATGGCATCACTCGTCTTTTGC	0.493			NA	T	NUP98|MSI2	AML*								106	147					0	0	0.00361	0	0
TBX20	57057	broad.mit.edu	37	7	35288379	35288379	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:35288379A>G	uc011kas.1	-	3	466	c.455T>C	c.(454-456)ATC>ACC	p.I152T		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	152	T-box.		I -> M (in ASD4).			nucleus	DNA binding			central_nervous_system(1)	1						CACAGGGACGATGTCCATCAG	0.597			NA											36	39					0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	7	39873503	39873503	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:39873503C>A	uc010kxp.2	+	1	691	c.334C>A	c.(334-336)CCG>ACG	p.P112T						SubName: Full=Similar to sequence-specific single-stranded-DNA-binding protein;												NA						CGATGGGATGCCGGGAGGCCC	0.592			NA											19	23					8.34094e-07	9.72366e-07	0.008871	1	0
MYL7	58498	broad.mit.edu	37	7	44180373	44180373	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:44180373A>T	uc003tkg.2	-	3	143	c.131T>A	c.(130-132)ATC>AAC	p.I44N		NM_021223	NP_067046	Q01449	MLRA_HUMAN	myosin light chain 2a	44	EF-hand 1.				actin filament-based movement|smooth muscle contraction	A band|myosin complex	ATPase activity, coupled|calcium ion binding|microfilament motor activity				0						ATTCTGGTCGATACAGCTGAA	0.647			NA											8	14					0	0	0.008291	0	0
PKD1L1	168507	broad.mit.edu	37	7	47882629	47882629	+	Silent	SNP	C	C	T	rs148252365		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:47882629C>T	uc003tny.1	-	34	5376	c.5376G>A	c.(5374-5376)CTG>CTA	p.L1792L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1792	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GATGGCCCGGCAGGGAAGCTT	0.468			NA											10	57					0	0	0.006214	0	0
ABCA13	154664	broad.mit.edu	37	7	48319268	48319268	+	Nonsense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:48319268G>A	uc003toq.2	+	18	8502	c.8477G>A	c.(8476-8478)TGG>TAG	p.W2826*	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2826					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATAGCTCTCTGGAGGAAAGGA	0.333			NA											60	97					0	0	0.00361	0	0
POM121L12	285877	broad.mit.edu	37	7	53104131	53104131	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:53104131T>A	uc003tpz.2	+	1	783	c.767T>A	c.(766-768)CTG>CAG	p.L256Q		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	256											0						CCTTCCGTGCTGGTCCAGCCC	0.647			NA											10	61					0	0	0.006214	0	0
ZNF716	441234	broad.mit.edu	37	7	57528880	57528880	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:57528880A>T	uc011kdi.1	+	4	825	c.713A>T	c.(712-714)GAG>GTG	p.E238V		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						CATACTGGAGAGAAACCCTAC	0.378			NA											8	9					0	0	0.004482	0	0
WBSCR28	135886	broad.mit.edu	37	7	73275552	73275552	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:73275552A>T	uc003tzk.2	+	1	64	c.28A>T	c.(28-30)AGC>TGC	p.S10C	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	10						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				AGTCAGATCCAGCCTTTTGGG	0.622			NA											13	30					0	0	0.004007	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	74004251	74004251	+	Nonsense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:74004251A>T	uc003uaq.2	+	23	2830	c.2437A>T	c.(2437-2439)AAA>TAA	p.K813*	GTF2IRD1_uc010lbq.2_Nonsense_Mutation_p.K830*|GTF2IRD1_uc003uap.2_Nonsense_Mutation_p.K798*|GTF2IRD1_uc003uar.1_Nonsense_Mutation_p.K798*	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	813	GTF2I-like 5.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						CTTCAACGAGAAATACGGTCA	0.607			NA											3	24					0	0	0.004672	0	0
HGF	3082	broad.mit.edu	37	7	81381537	81381537	+	Missense_Mutation	SNP	T	T	C	rs73381183	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:81381537T>C	uc003uhl.2	-	5	689	c.524A>G	c.(523-525)AAC>AGC	p.N175S	HGF_uc003uhm.2_Missense_Mutation_p.N170S|HGF_uc003uhn.1_Missense_Mutation_p.N175S|HGF_uc003uho.1_Missense_Mutation_p.N170S|HGF_uc003uhp.2_Missense_Mutation_p.N175S	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	175	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCGACAGTAGTTTTCCTGTAG	0.423			NA											28	50					0	0	0.007291	0	0
GRM3	2913	broad.mit.edu	37	7	86415918	86415918	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:86415918C>G	uc003uid.2	+	3	1909	c.810C>G	c.(808-810)CGC>CGG	p.R270R	GRM3_uc010lef.2_Silent_p.R268R|GRM3_uc010leg.2_Silent_p.R142R|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	270	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CCAACGCGCGCGTCGTGGTCC	0.652	GBM(52;969 1098 3139 52280)		NA											15	59					0	0	0.003163	0	0
ABCB1	5243	broad.mit.edu	37	7	87179246	87179246	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:87179246C>A	uc003uiz.1	-	14	1893	c.1475G>T	c.(1474-1476)CGT>CTT	p.R492L	ABCB1_uc011khc.1_Missense_Mutation_p.R428L	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	492	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	GACATTTTCACGGCCATAGCG	0.438			NA											80	183					2.17451e-35	3.4227e-35	0.00361	1	0
AKAP9	10142	broad.mit.edu	37	7	91691630	91691630	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:91691630G>T	uc003ulg.2	+	24	6032	c.5807G>T	c.(5806-5808)AGG>ATG	p.R1936M	AKAP9_uc003ulf.2_Missense_Mutation_p.R1936M|AKAP9_uc003uli.2_Missense_Mutation_p.R1559M	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1948	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CTTTTTGAAAGGCAAATTCAG	0.348			NA	T	BRAF	papillary thyroid								18	119					1.45105e-14	1.97706e-14	0.006122	1	0
CDK6	1021	broad.mit.edu	37	7	92244466	92244466	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:92244466C>T	uc011khw.1	-	8	1381	c.969G>A	c.(967-969)CTG>CTA	p.L323L	CDK6_uc010lez.2_Silent_p.L323L	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	323					cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			AGGCTGTATTCAGCTCCGAGG	0.587			NA	T	MLLT10	ALL								12	33					0	0	0.001368	0	0
COL1A2	1278	broad.mit.edu	37	7	94039100	94039100	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:94039100T>C	uc003ung.1	+	19	1473	c.1002T>C	c.(1000-1002)GGT>GGC	p.G334G	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	334			G -> C (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GCCCTGTTGGTGCTGCCGGTG	0.567			NA								HNSCC(75;0.22)			13	64					0	0	0.001368	0	0
TECPR1	25851	broad.mit.edu	37	7	97862145	97862145	+	Silent	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:97862145C>G	uc003upg.2	-	12	2017	c.1812G>C	c.(1810-1812)GTG>GTC	p.V604V	TECPR1_uc003uph.1_Silent_p.V534V	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	604						integral to membrane	protein binding			pancreas(1)	1						CCACCTGCTCCACGGCCTGCT	0.438			NA											7	11					0	0	0.001984	0	0
ARPC1B	10095	broad.mit.edu	37	7	98985702	98985702	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:98985702C>A	uc003upz.2	+	4	299	c.210C>A	c.(208-210)TGC>TGA	p.C70*	ARPC1A_uc011kit.1_RNA|ARPC1B_uc003uqa.2_Nonsense_Mutation_p.C70*|ARPC1B_uc003uqb.2_Nonsense_Mutation_p.C70*|ARPC1B_uc003uqc.2_Nonsense_Mutation_p.C70*|ARPC1B_uc003uqd.2_5'Flank	NM_005720	NP_005711	O15143	ARC1B_HUMAN	actin related protein 2/3 complex subunit 1B	70	WD 2.				cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton				0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			TTGTGACCTGCGGCACAGACC	0.642			NA											16	55					3.45872e-05	3.8816e-05	0.004007	1	0
GAL3ST4	79690	broad.mit.edu	37	7	99757918	99757918	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:99757918A>T	uc003utt.2	-	3	2111	c.1094T>A	c.(1093-1095)CTG>CAG	p.L365Q	C7orf43_uc011kjj.1_5'Flank|C7orf43_uc003utr.2_5'Flank|C7orf43_uc003uts.2_5'Flank|GAL3ST4_uc003utu.2_Missense_Mutation_p.L365Q|GAL3ST4_uc010lgq.2_Missense_Mutation_p.L303Q	NM_024637	NP_078913	Q96RP7	G3ST4_HUMAN	galactose-3-O-sulfotransferase 4	365	Lumenal (Potential).				cell-cell signaling|oligosaccharide metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane|membrane fraction	3'-phosphoadenosine 5'-phosphosulfate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(3)	3	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGCCCAGTCCAGGTTGTTCCA	0.637			NA											5	67					0	0	0.001168	0	0
TSC22D4	81628	broad.mit.edu	37	7	100071909	100071909	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:100071909C>T	uc003uva.2	-	3	1672	c.917G>A	c.(916-918)AGC>AAC	p.S306N	TSC22D4_uc003uvb.2_Missense_Mutation_p.S67N|TSC22D4_uc011kjv.1_Missense_Mutation_p.S67N|TSC22D4_uc010lgx.2_Missense_Mutation_p.S306N|TSC22D4_uc003uvc.3_Missense_Mutation_p.S306N	NM_030935	NP_112197	Q9Y3Q8	T22D4_HUMAN	TSC22 domain family, member 4	306					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			breast(2)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATCATCGTCGCTGTCTAGGTG	0.607			NA											5	56					0	0	0.000602	0	0
SLC12A9	56996	broad.mit.edu	37	7	100451828	100451828	+	Missense_Mutation	SNP	C	C	A	rs145131568		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:100451828C>A	uc003uwp.2	+	2	151	c.9C>A	c.(7-9)AGC>AGA	p.S3R	SLC12A9_uc003uwo.1_Missense_Mutation_p.S3R|SLC12A9_uc003uwq.2_Missense_Mutation_p.S3R|SLC12A9_uc011kki.1_Intron|SLC12A9_uc003uwr.2_5'Flank|SLC12A9_uc003uws.2_5'Flank|SLC12A9_uc003uwt.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	3	Cytoplasmic (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					CCATGGCCAGCGAGAGCTCAC	0.637			NA											19	43					8.10497e-08	9.72151e-08	0.010504	1	0
PIK3CG	5294	broad.mit.edu	37	7	106508033	106508033	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:106508033C>A	uc003vdv.3	+	2	112	c.27C>A	c.(25-27)CCC>CCA	p.P9P	PIK3CG_uc003vdu.2_Silent_p.P9P|PIK3CG_uc003vdw.2_Silent_p.P9P	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	9					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						ATAAACAGCCCGTGGTGCTGA	0.582			NA											16	69					3.99206e-14	5.4138e-14	0.007413	1	0
PNPLA8	50640	broad.mit.edu	37	7	108155042	108155042	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:108155042T>A	uc003vff.1	-	4	1301	c.894A>T	c.(892-894)GTA>GTT	p.V298V	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Silent_p.V298V|PNPLA8_uc003vfi.1_Silent_p.V198V|PNPLA8_uc003vfj.1_Silent_p.V298V|PNPLA8_uc003vfk.1_Silent_p.V198V	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	298					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						CTAAAGCTTGTACACCTTCCG	0.418			NA											28	94					0	0	0.005443	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518241	113518241	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:113518241G>T	uc010ljy.1	-	4	2937	c.2906C>A	c.(2905-2907)CCT>CAT	p.P969H		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	969					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTAGACTCAGGATAAGGGTG	0.378			NA											39	82					8.69298e-16	1.21284e-15	0.006999	1	0
ANKRD7	56311	broad.mit.edu	37	7	117876164	117876164	+	Nonsense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:117876164A>T	uc003vji.2	+	4	711	c.538A>T	c.(538-540)AAA>TAA	p.K180*		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	180	ANK 4.				male gonad development						0						TCTTCTGGAGAAAGGGGCTGA	0.259			NA											43	87					0	0	0.00361	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121624102	121624102	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:121624102G>T	uc003vjy.2	+	8	1254	c.859G>T	c.(859-861)GAG>TAG	p.E287*	PTPRZ1_uc003vjz.2_Nonsense_Mutation_p.E287*	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	287	Extracellular (Potential).|Alpha-carbonic anhydrase.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CAATTTTCGAGAGCAACAGTA	0.343			NA											27	90					1.26454e-06	1.47024e-06	0.005443	1	0
RNF133	168433	broad.mit.edu	37	7	122338610	122338610	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:122338610C>A	uc003vkj.1	-	1	599	c.363G>T	c.(361-363)GAG>GAT	p.E121D	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	121	PA.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						TGGCTCCCTTCTCAGTTGCCA	0.458	Colon(198;1778 2057 7449 19869 45985)		NA											53	101					4.25531e-23	6.35383e-23	0.00361	1	0
ZNF800	168850	broad.mit.edu	37	7	127013766	127013766	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:127013766G>A	uc003vlx.1	-	5	1887	c.1624C>T	c.(1624-1626)CAT>TAT	p.H542Y	ZNF800_uc003vlw.1_Missense_Mutation_p.H445Y|ZNF800_uc003vly.1_Missense_Mutation_p.H542Y|ZNF800_uc010lla.2_Missense_Mutation_p.H542Y	NM_176814	NP_789784	Q2TB10	ZN800_HUMAN	zinc finger protein 800	542	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GACTTTTTATGAACCACAGTT	0.338			NA											20	73					0	0	0.001882	0	0
FSCN3	29999	broad.mit.edu	37	7	127239488	127239488	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:127239488C>A	uc003vmd.1	+	5	1393	c.1174C>A	c.(1174-1176)CGA>AGA	p.R392R	FSCN3_uc011koh.1_Silent_p.R258R|FSCN3_uc010llc.1_Silent_p.R392R	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	392						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						CCTTGTATTGCGAGGTCGTTA	0.517			NA											24	63					1.85244e-09	2.31754e-09	0.00333	1	0
CPA5	93979	broad.mit.edu	37	7	130008265	130008265	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:130008265A>C	uc010lmd.1	+	14	1758	c.1138A>C	c.(1138-1140)ATC>CTC	p.I380L	CPA5_uc003vps.2_Missense_Mutation_p.I380L|CPA5_uc003vpt.2_Silent_p.G351G|CPA5_uc010lme.1_Missense_Mutation_p.I380L|CPA5_uc003vpu.1_Missense_Mutation_p.I380L|uc003vpv.1_RNA	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	380					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					GGCCAGTGGGATCACCGTCGA	0.547			NA											7	65					0	0	0.007835	0	0
CPA5	93979	broad.mit.edu	37	7	130008287	130008287	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:130008287A>T	uc010lmd.1	+	14	1780	c.1160A>T	c.(1159-1161)GAC>GTC	p.D387V	CPA5_uc003vps.2_Missense_Mutation_p.D387V|CPA5_uc003vpt.2_Missense_Mutation_p.T359S|CPA5_uc010lme.1_Missense_Mutation_p.D387V|CPA5_uc003vpu.1_Missense_Mutation_p.D387V|uc003vpv.1_RNA	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	387					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					TGGGCCTATGACAGTGGCATC	0.562			NA											21	65					0	0	0.00361	0	0
SLC35B4	84912	broad.mit.edu	37	7	133986824	133986824	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:133986824G>T	uc003vrn.2	-	5	707	c.383C>A	c.(382-384)TCT>TAT	p.S128Y	SLC35B4_uc010lmk.2_Translation_Start_Site|SLC35B4_uc010lml.1_Missense_Mutation_p.S60Y|SLC35B4_uc003vro.3_Missense_Mutation_p.S128Y	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	128	Helical; (Potential).					Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						TATCCCCACAGACACCAGGGC	0.368			NA											22	104					9.04412e-07	1.05293e-06	0.004656	1	0
AKR1B10	57016	broad.mit.edu	37	7	134222393	134222393	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:134222393C>A	uc003vrr.2	+	7	1041	c.721C>A	c.(721-723)CAC>AAC	p.H241N		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	241					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						TGCTGCAAAGCACAAAAAAAC	0.453			NA											46	69					3.54909e-21	5.2189e-21	0.002852	1	0
OR9A4	130075	broad.mit.edu	37	7	141618891	141618891	+	Silent	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:141618891C>T	uc003vwu.1	+	1	216	c.216C>T	c.(214-216)GTC>GTT	p.V72V		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					AGATCCTGGTCACAACCATAA	0.502			NA											13	136					0	0	0.001855	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141164	143141164	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:143141164G>A	uc011ktg.1	+	1	619	c.619G>A	c.(619-621)GCT>ACT	p.A207T	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	207	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					AATGCCCACTGCTGTCTTTTT	0.453			NA											56	89					0	0	0.00361	0	0
ARHGEF35	445328	broad.mit.edu	37	7	143884027	143884027	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:143884027G>A	uc003wdz.1	-	2	1568	c.1450C>T	c.(1450-1452)CTT>TTT	p.L484F		NM_001003702	NP_001003702	A5YM69	ARG35_HUMAN	Rho guanine nucleotide exchange factor (GEF)	484											0						acatatcaaaGTACTGATAGA	0.244			NA											9	8					0	0	0.004482	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146471396	146471396	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:146471396C>T	uc003weu.1	+	2	647	c.131C>T	c.(130-132)CCC>CTC	p.P44L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	44	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCTGGACTCCCCCATGTGGCT	0.443			NA								HNSCC(39;0.1)			5	27					0	0	0.000602	0	0
ZNF777	27153	broad.mit.edu	37	7	149152848	149152848	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:149152848T>A	uc003wfv.2	-	2	429	c.266A>T	c.(265-267)CAA>CTA	p.Q89L		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	89					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			AGAAGTCTCTTGCTCAGAAGC	0.602			NA											58	69					0	0	0.00361	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269316	150269316	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:150269316G>A	uc003whl.2	+	3	240	c.158G>A	c.(157-159)CGG>CAG	p.R53Q	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Missense_Mutation_p.R67Q	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	53							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATCCTTGGCCGGAAAGTGTTT	0.473			NA											3	50					0	0	0.004672	0	0
ACCN3	9311	broad.mit.edu	37	7	150748263	150748263	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:150748263C>A	uc003win.2	+	6	1439	c.1071C>A	c.(1069-1071)GCC>GCA	p.A357A	ACCN3_uc003wio.2_Silent_p.A357A|ACCN3_uc003wip.2_Silent_p.A357A|ACCN3_uc003wiq.2_Intron	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	357	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCGCAGATGCCATGCTTCGCA	0.751			NA											6	7					8.12818e-05	8.98324e-05	0.001984	1	0
SLC4A2	6522	broad.mit.edu	37	7	150771574	150771574	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:150771574A>G	uc003wit.3	+	18	3135	c.2879A>G	c.(2878-2880)CAG>CGG	p.Q960R	SLC4A2_uc011kve.1_Missense_Mutation_p.Q951R|SLC4A2_uc003wiu.3_Missense_Mutation_p.Q946R|SLC4A2_uc003wiv.3_Missense_Mutation_p.Q154R	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	960	Membrane (anion exchange).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACCTATACCCAGGTAAGGTGC	0.582			NA											8	71					0	0	0.00308	0	0
MLL3	58508	broad.mit.edu	37	7	151877045	151877045	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:151877045T>C	uc003wla.2	-	37	7535	c.7316A>G	c.(7315-7317)TAT>TGT	p.Y2439C	MLL3_uc003wkz.2_Missense_Mutation_p.Y1500C|MLL3_uc003wky.2_5'Flank	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2439	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GTTCCCAGGATAGGGAGGTGG	0.532	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								52	84					0	0	0.00361	0	0
MYOM2	9172	broad.mit.edu	37	8	2007299	2007299	+	Missense_Mutation	SNP	C	C	A	rs142466938	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:2007299C>A	uc003wpx.3	+	6	724	c.586C>A	c.(586-588)CAG>AAG	p.Q196K	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	196	Ig-like C2-type 1.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TCTGATTTGCCAGGCGGCTGA	0.512			NA											28	53					1.75199e-13	2.34674e-13	0.007291	1	0
MYOM2	9172	broad.mit.edu	37	8	2054306	2054306	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:2054306G>A	uc003wpx.3	+	23	3055	c.2917G>A	c.(2917-2919)GAT>AAT	p.D973N	MYOM2_uc011kwi.1_Missense_Mutation_p.D398N	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	973	Ig-like C2-type 3.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AAAGAATCCGGATAAGGAGGA	0.413			NA											8	52					0	0	0.00308	0	0
CSMD1	64478	broad.mit.edu	37	8	3046423	3046423	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:3046423C>T	uc011kwk.1	-	35	5902	c.5512G>A	c.(5512-5514)GGC>AGC	p.G1838S	CSMD1_uc011kwj.1_Missense_Mutation_p.G1230S|CSMD1_uc003wqe.2_Missense_Mutation_p.G994S|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1838	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATTCCCGAGCCCTCCGTAACT	0.433			NA											7	9					0	0	0.001984	0	0
PRSS55	203074	broad.mit.edu	37	8	10387130	10387130	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:10387130G>T	uc003wta.2	+	2	283	c.268G>T	c.(268-270)GAA>TAA	p.E90*	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	90	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						GGCAAGAAGTGAACCTTTCTG	0.527			NA											92	209					3.71036e-49	5.95844e-49	0.00361	1	0
PRSS55	203074	broad.mit.edu	37	8	10396253	10396253	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:10396253C>G	uc003wta.2	+	5	1024	c.1009C>G	c.(1009-1011)CTC>GTC	p.L337V	uc010lru.2_Intron|PRSS55_uc003wtb.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	337	Helical; (Potential).				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CAGATCCTGGCTCCTGCTCTG	0.522			NA											12	183					0	0	0.001368	0	0
RP1L1	94137	broad.mit.edu	37	8	10466457	10466457	+	Silent	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:10466457G>A	uc003wtc.2	-	4	5380	c.5151C>T	c.(5149-5151)CCC>CCT	p.P1717P		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1717					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TAGTGCTCGTGGGGTCCGTGT	0.657			NA											29	99					0	0	0.008361	0	0
MTMR7	9108	broad.mit.edu	37	8	17188770	17188770	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:17188770C>G	uc003wxm.2	-	7	993	c.754G>C	c.(754-756)GCT>CCT	p.A252P	MTMR7_uc003wxn.2_Missense_Mutation_p.A31P	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	252	Myotubularin phosphatase.|Substrate binding (By similarity).						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		TTCCCTGCAGCACGATTTGCC	0.383			NA											12	39					0	0	0.001368	0	0
LZTS1	11178	broad.mit.edu	37	8	20110354	20110354	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:20110354A>T	uc003wzr.2	-	2	1199	c.1088T>A	c.(1087-1089)CTC>CAC	p.L363H	LZTS1_uc010ltg.1_Missense_Mutation_p.L363H	NM_021020	NP_066300	Q9Y250	LZTS1_HUMAN	leucine zipper, putative tumor suppressor 1	363	Potential.				cell cycle|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	cell junction|dendritic spine|Golgi apparatus|nucleolus|nucleoplasm|postsynaptic density|postsynaptic membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				Colorectal(74;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		GTAGGACCTGAGCTTGGTCTC	0.642			NA											8	28					0	0	0.008291	0	0
DOK2	9046	broad.mit.edu	37	8	21766921	21766921	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:21766921G>T	uc003wzy.1	-	5	1233	c.1140C>A	c.(1138-1140)GGC>GGA	p.G380G	DOK2_uc003wzx.1_Silent_p.G380G|DOK2_uc003wzz.1_Silent_p.G226G|DOK2_uc010lth.1_Silent_p.G226G	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	380					blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		CATGCTGGAGGCCAGCAGGGT	0.617			NA											15	52					2.32078e-09	2.89932e-09	0.003163	1	0
LGI3	203190	broad.mit.edu	37	8	22005941	22005941	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:22005941T>A	uc003xav.2	-	8	1668	c.1379A>T	c.(1378-1380)CAG>CTG	p.Q460L	LGI3_uc010ltu.2_Missense_Mutation_p.Q436L	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	460	EAR 6.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		GGGCAGGGCCTGCACCTCCGA	0.652			NA											4	21					0	0	0.009096	0	0
NEFL	4747	broad.mit.edu	37	8	24813237	24813237	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:24813237A>T	uc003xee.2	-	1	895	c.793T>A	c.(793-795)TAC>AAC	p.Y265N		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	265	Rod.|Coil 2A.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AGCTTCTCGTACTGCGCGCGG	0.632			NA											4	30					0	0	0.009096	0	0
DOCK5	80005	broad.mit.edu	37	8	25101272	25101273	+	Missense_Mutation	DNP	GG	GG	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:25101272_25101273GG>AT	uc003xeg.2	+	2	263_264	c.126_127GG>AT	c.(124-129)GAGGGT>GAATGT	p.G43C	DOCK5_uc010luf.1_RNA|DOCK5_uc003xef.2_Missense_Mutation_p.G43C	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	43	SH3.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		AGATGTACGAGGGTAAGTCTGG	0.431	Pancreas(145;34 1887 3271 10937 30165)		NA											5	17					0	0	0.004672	0	0
DOCK5	80005	broad.mit.edu	37	8	25209284	25209284	+	Missense_Mutation	SNP	G	G	T	rs139516143	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:25209284G>T	uc003xeg.2	+	27	2929	c.2792G>T	c.(2791-2793)CGG>CTG	p.R931L	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.R645L|DOCK5_uc003xei.2_Missense_Mutation_p.R501L|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	931						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		ATAATGGAACGGCTGCTGAGA	0.512	Pancreas(145;34 1887 3271 10937 30165)		NA											6	26					3.59834e-05	4.02792e-05	0.001168	1	0
C8orf80	389643	broad.mit.edu	37	8	27898609	27898609	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:27898609C>T	uc003xgm.3	-	13	1713	c.1570G>A	c.(1570-1572)GCC>ACC	p.A524T		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	524						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GAAGTCCTGGCGGTCCTGACC	0.587			NA											5	15					0	0	0.000602	0	0
ZNF395	55893	broad.mit.edu	37	8	28304710	28304710	+	Translation_Start_Site	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:28304710C>A	uc003xgt.2	-	7	940	c.-80G>T	c.(-82--78)TAGGC>TATGC		FBXO16_uc003xgu.2_Missense_Mutation_p.R274M|FBXO16_uc003xgv.2_Missense_Mutation_p.R261M|FBXO16_uc003xgw.2_Missense_Mutation_p.R261M	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395						transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		TTTTCTTAGCCTAGTTCTGTC	0.343			NA											21	100					7.45023e-12	9.75465e-12	0.010504	1	0
DDHD2	23259	broad.mit.edu	37	8	38095615	38095615	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:38095615G>C	uc003xlb.2	+	5	887	c.510G>C	c.(508-510)GTG>GTC	p.V170V	DDHD2_uc003xla.2_Silent_p.V170V|DDHD2_uc003xlc.2_Silent_p.V170V|DDHD2_uc011lbl.1_Intron	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1	170					lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			AGCTTATGGTGCATTACCAGC	0.413			NA											18	70					0	0	0.007413	0	0
ANK1	286	broad.mit.edu	37	8	41563755	41563755	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:41563755C>A	uc003xok.2	-	18	2087	c.2003G>T	c.(2002-2004)GGA>GTA	p.G668V	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_5'UTR|ANK1_uc003xoi.2_Missense_Mutation_p.G668V|ANK1_uc003xoj.2_Missense_Mutation_p.G668V|ANK1_uc003xol.2_Missense_Mutation_p.G668V|ANK1_uc003xom.2_Missense_Mutation_p.G701V	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	668	ANK 20.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GGGAGTGAGTCCGCTCTGCAA	0.448			NA											14	19					0.000151284	0.000166776	0.001855	1	0
PRKDC	5591	broad.mit.edu	37	8	48772259	48772259	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:48772259C>G	uc003xqi.2	-	47	6177	c.6120G>C	c.(6118-6120)ATG>ATC	p.M2040I	PRKDC_uc003xqj.2_Missense_Mutation_p.M2040I|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2040					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CAAATTGACTCATTTCCTCAC	0.423	Esophageal Squamous(79;1091 1253 12329 31680 40677)		NA						NHEJ					6	96					0	0	0.001168	0	0
RP1	6101	broad.mit.edu	37	8	55533900	55533900	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:55533900G>T	uc003xsd.1	+	2	522	c.374G>T	c.(373-375)CGG>CTG	p.R125L	RP1_uc011ldy.1_Missense_Mutation_p.R125L	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	125					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CGGCGCCCGCGGCCCTGGCTC	0.706	Colon(91;1014 1389 7634 14542 40420)		NA											16	75					3.99206e-14	5.4138e-14	0.007413	1	0
PENK	5179	broad.mit.edu	37	8	57353894	57353894	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:57353894G>T	uc003xsz.2	-	2	822	c.741C>A	c.(739-741)GGC>GGA	p.G247G	PENK_uc003xta.3_Silent_p.G247G	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	247					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			AGTAACTTTCGCCTTCTTCGT	0.498			NA											24	121					1.10923e-09	1.39173e-09	0.00278	1	0
CHD7	55636	broad.mit.edu	37	8	61653994	61653994	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:61653994G>T	uc003xue.2	+	2	480	c.3G>T	c.(1-3)ATG>ATT	p.M1I		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GGAAGAAGATGGCAGATCCAG	0.478			NA											3	15					0.00909568	0.00956747	0.009096	1	0
CLVS1	157807	broad.mit.edu	37	8	62212449	62212449	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:62212449C>A	uc003xuh.2	+	2	387	c.63C>A	c.(61-63)GCC>GCA	p.A21A	CLVS1_uc003xug.2_Silent_p.A21A|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Silent_p.A21A	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	21					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						GAGATTTGGCCAAGATGACCC	0.453			NA											14	58					4.3838e-07	5.15185e-07	0.001855	1	0
CSPP1	79848	broad.mit.edu	37	8	68018196	68018196	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:68018196C>G	uc003xxi.2	+	10	1242	c.1211C>G	c.(1210-1212)GCA>GGA	p.A404G	CSPP1_uc003xxg.1_Missense_Mutation_p.A396G|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.A369G|CSPP1_uc003xxk.2_Missense_Mutation_p.A75G	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	404						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			AGTCCTTTTGCAGGGATGCTC	0.348			NA											11	33					0	0	0.001368	0	0
XKR9	389668	broad.mit.edu	37	8	71646054	71646054	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:71646054T>A	uc003xyq.2	+	5	1051	c.517T>A	c.(517-519)TGT>AGT	p.C173S	XKR9_uc010lze.2_Missense_Mutation_p.C173S|XKR9_uc010lzd.2_Missense_Mutation_p.C41S	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	173	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			GGTCTCTTGCTGTGCTATTTC	0.308			NA											11	47					0	0	0.008291	0	0
MSC	9242	broad.mit.edu	37	8	72756411	72756411	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:72756411C>T	uc003xyx.1	-	1	321	c.3G>A	c.(1-3)ATG>ATA	p.M1I	uc011lff.1_Intron|uc003xyy.2_RNA	NM_005098	NP_005089	O60682	MUSC_HUMAN	musculin	1					transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Breast(64;0.176)		Epithelial(68;0.137)|BRCA - Breast invasive adenocarcinoma(89;0.203)			AGCCCGTGGACATCCCGTTGT	0.706			NA											6	28					0	0	0.004482	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766681	77766681	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:77766681G>T	uc003yav.2	+	10	7776	c.7389G>T	c.(7387-7389)TGG>TGT	p.W2463C	ZFHX4_uc003yau.1_Missense_Mutation_p.W2508C|ZFHX4_uc003yaw.1_Missense_Mutation_p.W2463C	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2463	C2H2-type 16.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGGAACTCTGGCAGGAACACC	0.473			NA								HNSCC(33;0.089)			28	152					9.39395e-14	1.26218e-13	0.00632	1	0
RALYL	138046	broad.mit.edu	37	8	85799963	85799963	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:85799963G>T	uc003ycq.3	+	9	1226	c.810G>T	c.(808-810)ATG>ATT	p.M270I	RALYL_uc003ycr.3_Missense_Mutation_p.M270I|RALYL_uc003ycs.3_Missense_Mutation_p.M270I|RALYL_uc010lzy.2_Missense_Mutation_p.M259I|RALYL_uc003yct.3_Missense_Mutation_p.M283I|RALYL_uc003ycu.3_Missense_Mutation_p.M197I|RALYL_uc003ycv.3_Intron	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	270							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						GAGAAGAGATGACAGATGGGA	0.488			NA											13	128					3.27435e-08	3.94915e-08	0.00245	1	0
OSGIN2	734	broad.mit.edu	37	8	90926858	90926858	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:90926858C>A	uc003yeg.2	+	4	626	c.280C>A	c.(280-282)CAT>AAT	p.H94N	OSGIN2_uc003yeh.2_Missense_Mutation_p.H138N	NM_004337	NP_004328	Q9Y236	OSGI2_HUMAN	oxidative stress induced growth inhibitor family	94					germ cell development|meiosis						0			BRCA - Breast invasive adenocarcinoma(11;0.0344)			TACACTTCTTCATCCAGATGC	0.433			NA											5	133					0.00116845	0.00125944	0.001168	1	0
PABPC1	26986	broad.mit.edu	37	8	101721762	101721762	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:101721762T>A	uc003yjs.1	-	8	1674	c.1170A>T	c.(1168-1170)CGA>CGT	p.R390R	PABPC1_uc011lhc.1_Silent_p.R358R|PABPC1_uc011lhd.1_Silent_p.R345R|PABPC1_uc003yjt.1_Silent_p.R387R|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	390					mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			TGGGAACAGCTCGTACACTTG	0.502			NA											25	157					0	0	0.00333	0	0
NACAP1	83955	broad.mit.edu	37	8	102381147	102381147	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:102381147G>A	uc003ykc.1	+	1	27	c.10G>A	c.(10-12)GAA>AAA	p.E4K	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						AATGCCTGGCGAAGCCACAGA	0.567			NA											14	28					0	0	0.001855	0	0
LRP12	29967	broad.mit.edu	37	8	105503299	105503299	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:105503299T>C	uc003yma.2	-	7	2277	c.2182A>G	c.(2182-2184)AGT>GGT	p.S728G	LRP12_uc003ymb.2_Missense_Mutation_p.S709G|LRP12_uc003ylz.2_Missense_Mutation_p.S134G	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	728	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTGAGTGCACTTGTAAGCTGG	0.498			NA											5	77					0	0	0.001984	0	0
ANGPT1	284	broad.mit.edu	37	8	108334269	108334269	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:108334269G>C	uc003ymn.2	-	4	1131	c.663C>G	c.(661-663)GGC>GGG	p.G221G	ANGPT1_uc011lhv.1_Silent_p.G21G|ANGPT1_uc003ymo.2_Silent_p.G221G|ANGPT1_uc003ymp.3_Silent_p.G21G	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	221	Potential.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			GAGTAACCAAGCCTTGAAGGT	0.398			NA											6	89					0	0	0.001168	0	0
NUDCD1	84955	broad.mit.edu	37	8	110255340	110255340	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:110255340T>C	uc003ynb.3	-	10	1761	c.1650A>G	c.(1648-1650)CTA>CTG	p.L550L	NUDCD1_uc003yna.2_Silent_p.L521L|NUDCD1_uc010mcl.2_Silent_p.L463L	NM_032869	NP_116258	Q96RS6	NUDC1_HUMAN	NudC domain containing 1 isoform 1	550										ovary(1)|breast(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;1.56e-12)			CATTGGTTTCTAGGCTTGCTA	0.378			NA											79	271					0	0	0.00361	0	0
MTBP	27085	broad.mit.edu	37	8	121483118	121483118	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:121483118A>C	uc003ypc.1	+	11	1151	c.1106A>C	c.(1105-1107)AAC>ACC	p.N369T	MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	369					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			CCACCTCCCAACCAACTCAGT	0.343			NA											6	76					0	0	0.001168	0	0
KLHL38	340359	broad.mit.edu	37	8	124664095	124664095	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:124664095G>C	uc003yqs.1	-	1	1096	c.1072C>G	c.(1072-1074)CTG>GTG	p.L358V		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	358	Kelch 2.										0						TTGAGTTTCAGGGAGAAGATG	0.577			NA											30	56					0	0	0.004878	0	0
OC90	729330	broad.mit.edu	37	8	133036911	133036912	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:133036911_133036912CC>AA	uc003ytg.2	-	13	1250_1251	c.1250_1251GG>TT	c.(1249-1251)GGG>GTT	p.G417V	OC90_uc011lix.1_Missense_Mutation_p.G417V	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	433	Phospholipase A2-like 3.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			GCCCAGGGCACCCGAGTCTGCT	0.634			NA											15	15					0	0	0.004672	0	0
FAM135B	51059	broad.mit.edu	37	8	139209824	139209824	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:139209824C>T	uc003yuy.2	-	8	929	c.758G>A	c.(757-759)CGG>CAG	p.R253Q	FAM135B_uc003yux.2_Missense_Mutation_p.R154Q|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	253										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ACGGAGACCCCGGTAAGCGTG	0.607			NA								HNSCC(54;0.14)			15	58					0	0	0.004007	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141370270	141370270	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:141370270C>A	uc003yvj.2	-	9	1508	c.1374G>T	c.(1372-1374)GCG>GCT	p.A458A	TRAPPC9_uc003yvh.2_Silent_p.A556A|TRAPPC9_uc003yvi.1_Silent_p.A449A	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	458					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GCATCTGGACCGCAGCCCAGC	0.512			NA											16	42					1.15088e-07	1.36725e-07	0.004007	1	0
CPSF1	29894	broad.mit.edu	37	8	145619449	145619449	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr8:145619449C>G	uc003zcj.2	-	33	3886	c.3811G>C	c.(3811-3813)GTG>CTG	p.V1271L	MIR939_hsa-mir-939|MI0005761_5'Flank	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	1271					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			GCCCACATACCCAGAAAACCC	0.672	NSCLC(133;1088 1848 27708 34777 35269)		NA											6	27					0	0	0.001984	0	0
FREM1	158326	broad.mit.edu	37	9	14776091	14776091	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:14776091G>T	uc003zlm.2	-	25	5143	c.4553C>A	c.(4552-4554)GCC>GAC	p.A1518D	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_5'Flank|FREM1_uc003zll.2_Missense_Mutation_p.A54D	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1518	CSPG 11.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GGCCCCTTGGGCCAGTCTCAA	0.607			NA											14	91					1.5842e-08	1.9402e-08	0.001855	1	0
PLAA	9373	broad.mit.edu	37	9	26928119	26928119	+	Missense_Mutation	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:26928119T>C	uc003zqd.2	-	4	969	c.544A>G	c.(544-546)AGA>GGA	p.R182G	PLAA_uc003zqe.2_Missense_Mutation_p.R182G	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	182	WD 4.				phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		CTCTCACATCTTCCAGCCTTC	0.403	Melanoma(175;2670 2735 14091 35526)		NA											9	58					0	0	0.006214	0	0
UNC13B	10497	broad.mit.edu	37	9	35310542	35310542	+	Silent	SNP	T	T	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:35310542T>C	uc003zwq.2	+	9	1132	c.840T>C	c.(838-840)TAT>TAC	p.Y280Y	UNC13B_uc010mkl.1_Silent_p.Y280Y|UNC13B_uc003zwr.2_Silent_p.Y280Y	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	280					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			TAGACCAGTATCACGAACAAG	0.507			NA											19	195					0	0	0.006122	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39086814	39086814	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:39086814G>A	uc004abi.2	-	20	3492	c.3253C>T	c.(3253-3255)CAT>TAT	p.H1085Y	CNTNAP3_uc004abj.2_Missense_Mutation_p.H1004Y|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.H1085Y	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	1085	Laminin G-like 4.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GGATTTTGATGTCTATCTAGC	0.323			NA											16	33					0	0	0.006122	0	0
ZNF658	26149	broad.mit.edu	37	9	40774115	40774115	+	Missense_Mutation	SNP	C	C	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:40774115C>G	uc004abs.2	-	5	1312	c.1160G>C	c.(1159-1161)GGG>GCG	p.G387A	ZNF658_uc010mmm.1_Missense_Mutation_p.G387A|ZNF658_uc010mmn.1_Missense_Mutation_p.G387A	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	387	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TCTGCATTTCCCATGTTCATC	0.403			NA											105	169					0	0	0.00361	0	0
PRUNE2	158471	broad.mit.edu	37	9	79328486	79328486	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:79328486C>A	uc010mpk.2	-	7	1032	c.908G>T	c.(907-909)TGC>TTC	p.C303F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	303					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CACCTGACTGCACAGCTCCAT	0.522			NA											3	14					6.4e-05	7.10182e-05	0.004672	1	0
TLE4	7091	broad.mit.edu	37	9	82340023	82340023	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:82340023G>T	uc004ald.2	+	21	3210	c.2361G>T	c.(2359-2361)GGG>GGT	p.G787G	TLE4_uc004alc.2_Silent_p.G762G|TLE4_uc010mpr.2_Silent_p.G641G|TLE4_uc004ale.2_Silent_p.G399G|TLE4_uc011lsq.1_Silent_p.G730G|TLE4_uc010mps.2_Silent_p.G686G|TLE4_uc004alf.2_Silent_p.G701G	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CTGGCTCTGGGGATAAGAAGG	0.408			NA											14	52					0.00316338	0.00338462	0.003163	1	0
NTRK2	4915	broad.mit.edu	37	9	87285692	87285692	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:87285692C>A	uc004aoa.1	+	4	967	c.29C>A	c.(28-30)CCC>CAC	p.P10H	NTRK2_uc004anv.1_Missense_Mutation_p.P10H|NTRK2_uc004any.1_Missense_Mutation_p.P10H|NTRK2_uc004anz.1_Missense_Mutation_p.P10H|NTRK2_uc011lsz.1_Missense_Mutation_p.P10H|NTRK2_uc011lta.1_Missense_Mutation_p.P10H|NTRK2_uc004aob.1_Missense_Mutation_p.P10H|NTRK2_uc011ltb.1_5'Flank	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	10					activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TGGCATGGACCCGCCATGGCG	0.682			NA								TSP Lung(25;0.17)			50	59					3.19069e-20	4.66043e-20	0.00361	1	0
CENPP	401541	broad.mit.edu	37	9	95142109	95142109	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:95142109G>C	uc004arz.2	+	5	1072	c.532G>C	c.(532-534)GAA>CAA	p.E178Q	CENPP_uc010mqx.2_Missense_Mutation_p.E66Q|CENPP_uc004ary.1_Missense_Mutation_p.E178Q	NM_001012267	NP_001012267	Q6IPU0	CENPP_HUMAN	centromere protein P	178					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	chromosome, centromeric region|cytosol|nucleoplasm				ovary(2)	2						GGAGTGGTTTGAATATCGTAA	0.323			NA											23	34					0	0	0.002299	0	0
GRIN3A	116443	broad.mit.edu	37	9	104335671	104335671	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:104335671C>T	uc004bbp.1	-	9	3734	c.3133G>A	c.(3133-3135)GAC>AAC	p.D1045N	GRIN3A_uc004bbo.1_Missense_Mutation_p.D120N	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	1045	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AGGGGGATGTCCTGGTGGATC	0.512			NA											5	90					0	0	0.001168	0	0
GRIN3A	116443	broad.mit.edu	37	9	104499662	104499662	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:104499662G>T	uc004bbp.1	-	1	1201	c.600C>A	c.(598-600)CCC>CCA	p.P200P	GRIN3A_uc004bbq.1_Silent_p.P200P	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	200	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CCTGGCTCTGGGGGAAGGCGA	0.597			NA											15	20					6.31663e-08	7.59738e-08	0.003163	1	0
SVEP1	79987	broad.mit.edu	37	9	113265405	113265405	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:113265405A>T	uc010mtz.2	-	6	1733	c.1396T>A	c.(1396-1398)TGT>AGT	p.C466S	SVEP1_uc010mua.1_Missense_Mutation_p.C466S|SVEP1_uc004beu.2_Missense_Mutation_p.C466S	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	466	Sushi 2.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTTCATCACAGGCAACCAAA	0.463			NA											43	60					0	0	0.00874	0	0
PAPPA	5069	broad.mit.edu	37	9	118950340	118950340	+	Silent	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:118950340C>A	uc004bjn.2	+	2	1704	c.1323C>A	c.(1321-1323)CGC>CGA	p.R441R	PAPPA_uc011lxp.1_Silent_p.R234R|PAPPA_uc011lxq.1_Silent_p.R234R	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	441	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGGATTGCCGCCACCTGCGCC	0.587			NA											12	16					2.27111e-07	2.68348e-07	0.001368	1	0
ASTN2	23245	broad.mit.edu	37	9	119858333	119858333	+	Silent	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:119858333G>T	uc004bjs.1	-	5	1367	c.1266C>A	c.(1264-1266)CGC>CGA	p.R422R	ASTN2_uc004bjr.1_Silent_p.R422R|ASTN2_uc004bjt.1_Silent_p.R371R	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	422	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CTTTGCTGCGGCGGCGACTGC	0.502			NA											20	34					6.33239e-15	8.66851e-15	0.010504	1	0
ASTN2	23245	broad.mit.edu	37	9	120053691	120053691	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:120053691G>T	uc004bjs.1	-	2	645	c.544C>A	c.(544-546)CAG>AAG	p.Q182K	ASTN2_uc004bjr.1_Missense_Mutation_p.Q182K|ASTN2_uc004bjt.1_Missense_Mutation_p.Q182K	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	182	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TGGGCCAGCTGCCCGGAGCTG	0.602			NA											43	33					1.8453e-21	2.72729e-21	0.002522	1	0
TLR4	7099	broad.mit.edu	37	9	120475277	120475277	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:120475277G>C	uc004bjz.2	+	3	1162	c.871G>C	c.(871-873)GCA>CCA	p.A291P	TLR4_uc004bka.2_Missense_Mutation_p.A251P|TLR4_uc004bkb.2_Missense_Mutation_p.A91P	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	291	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						ATTCCGATTAGCATACTTAGA	0.353			NA											39	60					0	0	0.00623	0	0
C9orf119	375757	broad.mit.edu	37	9	131038432	131038432	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:131038432G>T	uc004bup.2	+	1	8	c.8G>T	c.(7-9)CGG>CTG	p.R3L	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.R3L	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	3					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						GCTATGCAGCGGCGTGGCCAG	0.637			NA											27	57					2.12542e-12	2.79964e-12	0.00632	1	0
C9orf98	158067	broad.mit.edu	37	9	135690074	135690074	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:135690074C>A	uc004cbu.1	-	10	1486	c.930G>T	c.(928-930)AGG>AGT	p.R310S	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_Missense_Mutation_p.R106S	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	310	Adenylate kinase.					cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		CAAACGTGGTCCTATCTGCCA	0.498			NA											28	39					2.23313e-29	3.46492e-29	0.002445	1	0
C9orf98	158067	broad.mit.edu	37	9	135704074	135704075	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:135704074_135704075CC>AA	uc004cbu.1	-	6	997_998	c.441_442GG>TT	c.(439-444)CAGGCT>CATTCT	p.147_148QA>HS	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_5'UTR	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	147_148						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		ATCCTCAGAGCCTGCTCACGCG	0.545			NA											6	8					0	0	0.004672	0	0
FAM166A	401565	broad.mit.edu	37	9	140139769	140139769	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:140139769C>T	uc004cmi.1	-	3	567	c.512G>A	c.(511-513)AGG>AAG	p.R171K		NM_001001710	NP_001001710	Q6J272	F166A_HUMAN	hypothetical protein LOC401565	171										ovary(1)	1						CTGGTGCTGCCTGGGGGCCTC	0.667			NA											24	29					0	0	0.00278	0	0
CLCN4	1183	broad.mit.edu	37	X	10181855	10181855	+	Missense_Mutation	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:10181855A>G	uc004csy.3	+	11	2141	c.1711A>G	c.(1711-1713)ATC>GTC	p.I571V	CLCN4_uc011mid.1_Missense_Mutation_p.I477V	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	571	Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GAAAGAAGGCATCTACGAGGC	0.567	Melanoma(74;1050 1296 1576 30544 38374)		NA											34	22					0	0	0.002836	0	0
CNKSR2	22866	broad.mit.edu	37	X	21609267	21609267	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:21609267G>T	uc004czx.1	+	15	1821	c.1785G>T	c.(1783-1785)TGG>TGT	p.W595C	CNKSR2_uc004czw.2_Missense_Mutation_p.W595C|CNKSR2_uc011mjn.1_Missense_Mutation_p.W546C|CNKSR2_uc011mjo.1_Missense_Mutation_p.W565C|CNKSR2_uc004czy.2_Missense_Mutation_p.W187C	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	595	PH.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AAAAATATTGGTTTGTCCTAA	0.363			NA											46	51					2.43468e-25	3.68584e-25	0.00361	1	0
DCAF8L1	139425	broad.mit.edu	37	X	27999166	27999166	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:27999166C>A	uc004dbx.1	-	1	401	c.286G>T	c.(286-288)GAG>TAG	p.E96*		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	96	Glu-rich.									ovary(3)|skin(1)	4						TCTGTCTCCTCTCCCACTAAC	0.373			NA											51	44					4.86159e-25	7.34716e-25	0.00361	1	0
DMD	1756	broad.mit.edu	37	X	32632526	32632526	+	Missense_Mutation	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:32632526T>A	uc004dda.1	-	12	1620	c.1376A>T	c.(1375-1377)GAG>GTG	p.E459V	DMD_uc004dcz.2_Missense_Mutation_p.E336V|DMD_uc004dcy.1_Missense_Mutation_p.E455V|DMD_uc004ddb.1_Missense_Mutation_p.E451V|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.E451V|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	459	Spectrin 2.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GTCATTCAACTCTTTCAGTTT	0.363			NA											6	20					0	0	0.001168	0	0
LANCL3	347404	broad.mit.edu	37	X	37526534	37526535	+	Splice_Site	DNP	GG	GG	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:37526534_37526535GG>TT	uc011mkd.1	+	4	1198	c.896_splice	c.e4-1	p.G299_splice	LANCL3_uc004ddp.1_Splice_Site_p.G299_splice	NM_198511	NP_940913	Q6ZV70	LANC3_HUMAN	LanC lantibiotic synthetase component C-like 3								catalytic activity				0						TGTTTTCACAGGAATTGCCTAT	0.386			NA											19	14					0	0	0.004672	0	0
ZNF630	57232	broad.mit.edu	37	X	47918444	47918444	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:47918444C>A	uc004div.3	-	5	1639	c.1387G>T	c.(1387-1389)GAC>TAC	p.D463Y	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.D339Y	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	463	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						TTCCCACAGTCAGTACACACA	0.433			NA											16	16					3.52763e-06	4.06353e-06	0.00499	1	0
FTSJ1	24140	broad.mit.edu	37	X	48339578	48339578	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:48339578A>C	uc004djo.1	+	6	724	c.401A>C	c.(400-402)CAG>CCG	p.Q134P	FTSJ1_uc004djl.2_Missense_Mutation_p.Q134P|FTSJ1_uc004djm.2_Missense_Mutation_p.Q134P|FTSJ1_uc004djn.1_Missense_Mutation_p.Q134P|FTSJ1_uc004djp.1_Missense_Mutation_p.Q134P|FTSJ1_uc011mlw.1_Intron	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a	134					RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						ATGCAGGCCCAGCTCCTCCTA	0.592			NA											15	14					0	0	0.004007	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873528	91873528	+	Silent	SNP	A	A	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:91873528A>G	uc004efk.1	+	7	4478	c.3633A>G	c.(3631-3633)CCA>CCG	p.P1211P	PCDH11X_uc004efl.1_Silent_p.P1201P|PCDH11X_uc004efo.1_Silent_p.P1174P|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Silent_p.P1203P|PCDH11X_uc004efn.1_Silent_p.P1193P	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1211	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GCCACAGCCCACCACCGATAC	0.597	NSCLC(38;925 1092 2571 38200 45895)		NA											10	60					0	0	0.008291	0	0
NAP1L3	4675	broad.mit.edu	37	X	92926929	92926929	+	Missense_Mutation	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:92926929C>T	uc004efq.2	-	1	1680	c.1375G>A	c.(1375-1377)GAT>AAT	p.D459N	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	459					nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						AGGATAGCATCTTCTCGTGGT	0.393			NA											8	14					0	0	0.00308	0	0
DIAPH2	1730	broad.mit.edu	37	X	96200587	96200587	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:96200587G>C	uc004efu.3	+	14	1902	c.1506G>C	c.(1504-1506)AAG>AAC	p.K502N	DIAPH2_uc004eft.3_Missense_Mutation_p.K502N	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	502	Potential.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						AGTTTTCAAAGAAGGTAAGCT	0.303			NA											22	21					0	0	0.010504	0	0
NXF3	56000	broad.mit.edu	37	X	102334690	102334690	+	Splice_Site	SNP	C	C	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:102334690C>T	uc004eju.2	-	13	1231	c.1160_splice	c.e13+1	p.P387_splice	NXF3_uc010noi.1_Splice_Site_p.P237_splice	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3							cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GTGATACTCACGGGGCTGAGT	0.577			NA											23	35					0	0	0.003954	0	0
GLRA4	441509	broad.mit.edu	37	X	102962361	102962361	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:102962361G>T	uc011mse.1	-	9	1586	c.1165C>A	c.(1165-1167)CCA>ACA	p.P389T		NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	389	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						CCTTCCATTGGACCTCCATCT	0.498			NA											9	31					0.000442599	0.000483037	0.006214	1	0
TEX13B	56156	broad.mit.edu	37	X	107225239	107225239	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:107225239G>A	uc004enn.1	-	2	212	c.119C>T	c.(118-120)TCC>TTC	p.S40F		NM_031273	NP_112563	Q9BXU2	TX13B_HUMAN	testis expressed 13B	40										ovary(1)	1						CCAGGATAAGGATATATTCTC	0.597			NA											28	43					0	0	0.00632	0	0
COL4A6	1288	broad.mit.edu	37	X	107430488	107430488	+	Missense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:107430488G>T	uc004enw.3	-	23	1895	c.1792C>A	c.(1792-1794)CCA>ACA	p.P598T	COL4A6_uc004env.3_Missense_Mutation_p.P597T|COL4A6_uc011msn.1_Missense_Mutation_p.P597T|COL4A6_uc010npk.2_Missense_Mutation_p.P597T	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	598	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TTTTCACCTGGGAAGCCCTGT	0.498	Melanoma(87;1895 1945 2589 7165)		NA							Alport_syndrome_with_Diffuse_Leiomyomatosis				38	37					2.52449e-32	3.94508e-32	0.006999	1	0
ZCCHC12	170261	broad.mit.edu	37	X	117959580	117959580	+	Nonsense_Mutation	SNP	G	G	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:117959580G>T	uc004equ.2	+	4	846	c.373G>T	c.(373-375)GAA>TAA	p.E125*		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						tggggagtctgaaagcagtgt	0			NA											73	60					6.01781e-45	9.61085e-45	0.00361	1	0
NKRF	55922	broad.mit.edu	37	X	118723347	118723347	+	Missense_Mutation	SNP	G	G	T	rs144536074		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:118723347G>T	uc004erq.2	-	2	2694	c.2041C>A	c.(2041-2043)CAT>AAT	p.H681N	NKRF_uc004err.2_Missense_Mutation_p.H681N	NM_017544	NP_060014	O15226	NKRF_HUMAN	transcription factor NRF	681					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|double-stranded RNA binding			ovary(1)|central_nervous_system(1)	2						AGCTCGTAATGGCCCACTTGG	0.403			NA											4	48					1.23904e-05	1.405e-05	0.000602	1	0
STAG2	10735	broad.mit.edu	37	X	123195708	123195708	+	Missense_Mutation	SNP	G	G	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:123195708G>A	uc004etz.3	+	16	1961	c.1622G>A	c.(1621-1623)AGA>AAA	p.R541K	STAG2_uc004eua.2_Missense_Mutation_p.R541K|STAG2_uc004eub.2_Missense_Mutation_p.R541K|STAG2_uc004euc.2_Missense_Mutation_p.R541K|STAG2_uc004eud.2_Missense_Mutation_p.R541K|STAG2_uc004eue.2_Missense_Mutation_p.R541K	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	541					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						CCCGTGGGAAGAGGGACAGGA	0.363			NA											20	30					0	0	0.010504	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130219647	130219647	+	Silent	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:130219647G>C	uc004evz.2	+	8	1386	c.1041G>C	c.(1039-1041)CTG>CTC	p.L347L	ARHGAP36_uc004ewa.2_Silent_p.L335L|ARHGAP36_uc004ewb.2_Silent_p.L316L|ARHGAP36_uc004ewc.2_Silent_p.L211L	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	347	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						TGGAGCGTCTGCTGAAGGCCC	0.478			NA											85	77					0	0	0.00361	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290686	141290686	+	Missense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:141290686C>A	uc004fbu.1	-	3	1436	c.1088G>T	c.(1087-1089)AGT>ATT	p.S363I		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	363						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGACATGACACTGAGGCTTTC	0.493			NA								HNSCC(46;0.14)			31	47					1.17478e-05	1.33561e-05	0.003271	1	0
SLITRK2	84631	broad.mit.edu	37	X	144904933	144904934	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:144904933_144904934CC>AA	uc004fcd.2	+	5	1980_1981	c.990_991CC>AA	c.(988-993)TACCAG>TAAAAG	p.330_331YQ>*K	SLITRK2_uc010nsp.2_Nonsense_Mutation_p.330_331YQ>*K|SLITRK2_uc010nso.2_Nonsense_Mutation_p.330_331YQ>*K|SLITRK2_uc011mwq.1_Nonsense_Mutation_p.330_331YQ>*K|SLITRK2_uc011mwr.1_Nonsense_Mutation_p.330_331YQ>*K|SLITRK2_uc011mws.1_Nonsense_Mutation_p.330_331YQ>*K|SLITRK2_uc004fcg.2_Nonsense_Mutation_p.330_331YQ>*K|SLITRK2_uc011mwt.1_Nonsense_Mutation_p.330_331YQ>*K	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	330_331	Extracellular (Potential).|LRRNT.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TCATGGTGTACCAGACCAAGTC	0.53			NA											4	31					0	0	0.004672	0	0
AFF2	2334	broad.mit.edu	37	X	147919203	147919203	+	Silent	SNP	T	T	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:147919203T>A	uc004fcp.2	+	5	1598	c.1119T>A	c.(1117-1119)ACT>ACA	p.T373T	AFF2_uc004fco.2_Intron|AFF2_uc004fcq.2_Silent_p.T369T|AFF2_uc004fcr.2_Intron|AFF2_uc011mxb.1_Intron|AFF2_uc004fcs.2_Intron|AFF2_uc011mxc.1_Intron	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	373					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCTCTCACTTCCATGCATA	0.403			NA											32	73					0	0	0.005524	0	0
CD99L2	83692	broad.mit.edu	37	X	149963906	149963906	+	Missense_Mutation	SNP	G	G	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:149963906G>C	uc004fel.2	-	5	449	c.331C>G	c.(331-333)CCA>GCA	p.P111A	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_Missense_Mutation_p.P62A|CD99L2_uc004fen.2_Intron|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_Intron	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	111	Extracellular (Potential).				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GTATTTGCTGGAGCTCTGGTG	0.512			NA											50	91					0	0	0.00361	0	0
GPR50	9248	broad.mit.edu	37	X	150345292	150345292	+	Nonsense_Mutation	SNP	C	C	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:150345292C>A	uc010ntg.1	+	1	234	c.99C>A	c.(97-99)TGC>TGA	p.C33*	uc004fes.1_RNA|GPR50_uc011myc.1_Nonsense_Mutation_p.C33*	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	33	Helical; Name=1; (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTATGTTCTGCGCGATGGTTA	0.527			NA											41	90					1.07121e-22	1.5913e-22	0.006999	1	0
GPR50	9248	broad.mit.edu	37	X	150349269	150349269	+	Missense_Mutation	SNP	A	A	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:150349269A>T	uc010ntg.1	+	2	1349	c.1214A>T	c.(1213-1215)AAG>ATG	p.K405M	uc004fes.1_5'Flank	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	405	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					ACCCACCACAAGTCTGTCTTT	0.602			NA											66	119					0	0	0.00361	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900674	151900674	+	Missense_Mutation	SNP	A	A	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:151900674A>C	uc010ntp.2	-	3	481	c.127T>G	c.(127-129)TCT>GCT	p.S43A	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.S43A|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	43	Poly-Ser.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ACTAGAGTAGAGGAGGAGGAG	0.637			NA											14	70					0	0	0.003163	0	0
AVPR2	554	broad.mit.edu	37	X	153171805	153171805	+	Missense_Mutation	SNP	T	T	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:153171805T>G	uc004fjh.3	+	2	916	c.845T>G	c.(844-846)CTG>CGG	p.L282R	AVPR2_uc004fjg.3_Missense_Mutation_p.L71R|AVPR2_uc004fji.2_Missense_Mutation_p.L282R	NM_000054	NP_000045	P30518	V2R_HUMAN	arginine vasopressin receptor 2 isoform 1	282	Helical; Name=6; (Potential).		L -> P (in XNDI).		activation of adenylate cyclase activity|excretion|G-protein signaling, coupled to cAMP nucleotide second messenger|hemostasis|positive regulation of gene expression|transmembrane transport|water transport	endoplasmic reticulum|endosome|Golgi apparatus|integral to plasma membrane	vasopressin receptor activity			breast(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067)	GTCTATGTGCTGTGCTGGGCA	0.662			NA											29	46					0	0	0.008361	0	0
DOCK7	85440	broad.mit.edu	37	1	63128718	63128719	+	Frame_Shift_Ins	INS	-	-	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:63128718_63128719insA	uc001daq.2	-	2	155_156	c.121_122insT	c.(121-123)GGCfs	p.G41fs	DOCK7_uc001dap.2_Frame_Shift_Ins_p.G41fs|DOCK7_uc009wah.1_Frame_Shift_Ins_p.G41fs	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	41					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						GGATATATTGCCAACAATATTA	0.391			NA											26	159	---	---	---	---	NA	NA	NA	NA	NA
GOLPH3L	55204	broad.mit.edu	37	1	150636173	150636173	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr1:150636173delC	uc001evj.2	-	3	467	c.250delG	c.(250-252)GCCfs	p.A84fs	GOLPH3L_uc010pci.1_Intron	NM_018178	NP_060648	Q9H4A5	GLP3L_HUMAN	Golgi phosphoprotein 3-like	84						Golgi cisterna membrane				ovary(1)	1	all_cancers(9;3.09e-52)|all_epithelial(9;4.47e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000615)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;1.2e-23)|all cancers(9;4.81e-23)|OV - Ovarian serous cystadenocarcinoma(6;1.93e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			CCCCGCATGGCCAGCTCTATC	0.498			NA											75	58	---	---	---	---	NA	NA	NA	NA	NA
OR4C6	219432	broad.mit.edu	37	11	55433228	55433228	+	Frame_Shift_Del	DEL	T	T	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:55433228delT	uc001nht.3	+	3	851	c.586delT	c.(586-588)TTAfs	p.L196fs	OR4C6_uc010rik.1_Frame_Shift_Del_p.L196fs	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CCTGGGCCTCTTAGTTACCCT	0.443			NA											34	104	---	---	---	---	NA	NA	NA	NA	NA
OR8D2	283160	broad.mit.edu	37	11	124189574	124189574	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr11:124189574delC	uc010sah.1	-	1	520	c.520delG	c.(520-522)GTCfs	p.V174fs		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TAATGACTGACCGTATGAGAC	0.438			NA											21	86	---	---	---	---	NA	NA	NA	NA	NA
RB1	5925	broad.mit.edu	37	13	48934152	48934152	+	Splice_Site	DEL	G	G	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr13:48934152delG	uc001vcb.2	+	7	774	c.608_splice	c.e7-1	p.G203_splice	RB1_uc010acs.1_Splice_Site|RB1_uc010act.1_5'Flank	NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1						androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(3)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTTTTTTTCAGGGGAAGTATT	0.318			6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			23	25	---	---	---	---	NA	NA	NA	NA	NA
PRDM7	11105	broad.mit.edu	37	16	90127890	90127890	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr16:90127890delC	uc010cje.2	-	8	940	c.920delG	c.(919-921)GGAfs	p.G307fs	PRDM7_uc002fqo.2_Frame_Shift_Del_p.G101fs|PRDM7_uc010cjf.2_Frame_Shift_Del_p.G190fs|PRDM7_uc010cjg.1_Frame_Shift_Del_p.G101fs|PRDM7_uc010cjh.1_RNA	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	307	SET.					chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		TTTATCTTTTCCATCCACATA	0.408			NA											54	125	---	---	---	---	NA	NA	NA	NA	NA
TP53	7157	broad.mit.edu	37	17	7579471	7579471	+	Frame_Shift_Del	DEL	G	G	-	rs56275308		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:7579471delG	uc002gim.2	-	4	410	c.216delC	c.(214-216)CCCfs	p.P72fs	TP53_uc002gig.1_Frame_Shift_Del_p.P72fs|TP53_uc002gih.2_Frame_Shift_Del_p.P72fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Del_p.P72fs|TP53_uc010cni.1_Frame_Shift_Del_p.P72fs|TP53_uc002gij.2_Frame_Shift_Del_p.P72fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Frame_Shift_Del_p.P33fs|TP53_uc010cnk.1_Frame_Shift_Del_p.P87fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	72	Interaction with WWOX.|Interaction with HRMT1L2.		P -> C (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|P -> L (in a sporadic cancer; somatic mutation).|P -> H (in sporadic cancers; somatic mutation).|P -> G (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.R72fs*51(6)|p.G59fs*23(3)|p.R72C(2)|p.V73fs*76(2)|p.R72H(2)|p.V73fs*9(1)|p.R65fs*38(1)|p.E68fs*76(1)|p.V73fs*50(1)|p.D48fs*55(1)|p.P13fs*18(1)|p.S33fs*23(1)|p.D57_A76del20(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CAGGGGCCACGGGGGGAGCAG	0.602	Pancreas(47;798 1329 9957 10801)		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			82	112	---	---	---	---	NA	NA	NA	NA	NA
GGNBP2	79893	broad.mit.edu	37	17	34901617	34901618	+	Frame_Shift_Ins	INS	-	-	C	rs140693226		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr17:34901617_34901618insC	uc002hnb.2	+	2	293_294	c.44_45insC	c.(43-45)TTCfs	p.F15fs	GGNBP2_uc002hna.2_Frame_Shift_Ins_p.F15fs	NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	15					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		GAGGAGGAGTTCCCCTTCGAGA	0.342			NA											3	3	---	---	---	---	NA	NA	NA	NA	NA
BIRC6	57448	broad.mit.edu	37	2	32640490	32640490	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:32640490delC	uc010ezu.2	+	10	2265	c.2131delC	c.(2131-2133)CCCfs	p.P711fs		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	711					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CTCTGTGTTTCCCAAGCCTGG	0.468	Pancreas(94;175 1509 16028 18060 45422)		NA											21	67	---	---	---	---	NA	NA	NA	NA	NA
DFNB59	494513	broad.mit.edu	37	2	179318348	179318349	+	Splice_Site	INS	-	-	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr2:179318348_179318349insT	uc002umi.3	+	2	567	c.211_splice	c.e2+1	p.G71_splice	PRKRA_uc002umd.2_5'Flank|PRKRA_uc002ume.2_5'Flank|PRKRA_uc002umf.2_5'Flank|PRKRA_uc002umg.2_5'Flank|DFNB59_uc002umj.3_Splice_Site_p.G71_splice	NM_001042702	NP_001036167	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59						sensory perception of sound						0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			ATTTCAGCTGGTAAGTTTAAAT	0.327			NA											8	17	---	---	---	---	NA	NA	NA	NA	NA
PLCB4	5332	broad.mit.edu	37	20	9368137	9368137	+	Frame_Shift_Del	DEL	A	A	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:9368137delA	uc002wnf.2	+	14	1228	c.1092delA	c.(1090-1092)GGAfs	p.G364fs	PLCB4_uc010gbw.1_Frame_Shift_Del_p.G364fs|PLCB4_uc010gbx.2_Frame_Shift_Del_p.G364fs|PLCB4_uc002wne.2_Frame_Shift_Del_p.G364fs|PLCB4_uc002wnh.2_Frame_Shift_Del_p.G211fs	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	364	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GCTGGGATGGAAAAGGTGAAG	0.308			NA											14	139	---	---	---	---	NA	NA	NA	NA	NA
CASS4	57091	broad.mit.edu	37	20	55033542	55033542	+	Frame_Shift_Del	DEL	G	G	-	rs143052505		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr20:55033542delG	uc002xxp.2	+	7	2325	c.2100delG	c.(2098-2100)GCGfs	p.A700fs	CASS4_uc002xxr.2_Frame_Shift_Del_p.A700fs|CASS4_uc010zze.1_Frame_Shift_Del_p.A646fs|CASS4_uc010gio.2_Frame_Shift_Del_p.A263fs	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	700					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						GCCAGCCCGCGGAGATCATCA	0.592			NA											15	119	---	---	---	---	NA	NA	NA	NA	NA
GBA3	57733	broad.mit.edu	37	4	22749403	22749404	+	Frame_Shift_Ins	INS	-	-	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:22749403_22749404insT	uc003gqp.3	+	3	862_863	c.771_772insT	c.(769-774)CCCATAfs	p.P257fs	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Frame_Shift_Ins_p.P258fs	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	257_258					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TTGCTAAACCCATATTCATCGA	0.446			NA											20	96	---	---	---	---	NA	NA	NA	NA	NA
LPHN3	23284	broad.mit.edu	37	4	62903472	62903472	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:62903472delC	uc010ihh.2	+	21	3584	c.3411delC	c.(3409-3411)TGCfs	p.C1137fs	LPHN3_uc003hcq.3_Frame_Shift_Del_p.C1137fs|LPHN3_uc003hct.2_Frame_Shift_Del_p.C521fs	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1115	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						ATGGGAAATGCCTGCGAACAC	0.423			NA											28	67	---	---	---	---	NA	NA	NA	NA	NA
GK3P	2713	broad.mit.edu	37	4	166199558	166199558	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr4:166199558delC	uc003ird.3	-	1	1618	c.1240delG	c.(1240-1242)GACfs	p.D414fs	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						ATTCCACAGTCTCGATTCATG	0.408			NA											52	43	---	---	---	---	NA	NA	NA	NA	NA
TECPR1	25851	broad.mit.edu	37	7	97854161	97854161	+	Frame_Shift_Del	DEL	G	G	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:97854161delG	uc003upg.2	-	19	2847	c.2642delC	c.(2641-2643)CCGfs	p.P881fs		NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	881						integral to membrane	protein binding			pancreas(1)	1						CGTGCCCCCCGGAACGCTGAA	0.637			NA											3	4	---	---	---	---	NA	NA	NA	NA	NA
PUS7	54517	broad.mit.edu	37	7	105111238	105111239	+	Frame_Shift_Ins	INS	-	-	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:105111238_105111239insA	uc003vcx.2	-	11	1513_1514	c.1294_1295insT	c.(1294-1296)ACTfs	p.T432fs	PUS7_uc010lji.2_Frame_Shift_Ins_p.T438fs|PUS7_uc003vcy.2_Frame_Shift_Ins_p.T432fs|PUS7_uc003vcz.1_Frame_Shift_Ins_p.T432fs	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	432	TRUD.				pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						GAGGGCAGCAGTTGGGTCTTTG	0.455	Colon(138;2387 3051 17860)		NA											39	147	---	---	---	---	NA	NA	NA	NA	NA
SLC26A4	5172	broad.mit.edu	37	7	107335136	107335137	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr7:107335136_107335137delTG	uc003vep.2	+	12	1636_1637	c.1412_1413delTG	c.(1411-1413)CTGfs	p.L471fs	SLC26A4_uc011kmb.1_Frame_Shift_Del_p.L58fs|SLC26A4_uc011kmc.1_Frame_Shift_Del_p.L32fs|SLC26A4_uc011kmd.1_Frame_Shift_Del_p.L40fs	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	471	Extracellular (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						ATTCCTCGTCTGTGGAGACAGA	0.421			NA							Pendred_syndrome				36	60	---	---	---	---	NA	NA	NA	NA	NA
ADAMTSL1	92949	broad.mit.edu	37	9	18906824	18906824	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:18906824delC	uc003zne.3	+	28	5223	c.5096delC	c.(5095-5097)ACCfs	p.T1699fs	ADAMTSL1_uc003znf.3_Frame_Shift_Del_p.T400fs|ADAMTSL1_uc003zng.1_Frame_Shift_Del_p.T90fs	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1699	TSP type-1 9.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CATGCCCGCACCAACAAGGCA	0.612			NA											26	46	---	---	---	---	NA	NA	NA	NA	NA
OR1L1	26737	broad.mit.edu	37	9	125424827	125424827	+	Frame_Shift_Del	DEL	C	C	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chr9:125424827delC	uc011lza.1	+	1	983	c.983delC	c.(982-984)ACCfs	p.T328fs		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	328	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ATTATCTACACCGTACTGACT	0.403			NA											36	57	---	---	---	---	NA	NA	NA	NA	NA
GPR174	84636	broad.mit.edu	37	X	78426763	78426763	+	Frame_Shift_Del	DEL	G	G	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	443f5b2d-832e-45cf-bca5-3f064ea3bc50	8dfe00f3-1e3c-4752-b2fe-79e7dc150306	g.chrX:78426763delG	uc004edg.1	+	1	295	c.259delG	c.(259-261)GGGfs	p.G87fs		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	87	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						CTGGCCATTTGGGCCTGGTCT	0.418			NA								HNSCC(63;0.18)			19	10	---	---	---	---	NA	NA	NA	NA	NA
