Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GABRD	2563	broad.mit.edu	37	1	1956994	1956994	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:1956994G>A	uc001aip.2	+	4	382	c.287G>A	c.(286-288)CGG>CAG	p.R96Q		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	96	Extracellular (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		CAGAGCTGGCGGGACAGCAGG	0.652			NA											26	5					0	0	0.005443	0	0
CHD5	26038	broad.mit.edu	37	1	6214763	6214763	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:6214763G>A	uc001amb.1	-	5	802	c.702C>T	c.(700-702)CCC>CCT	p.P234P		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	234					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCACAGGCTGGGGCACCTGCG	0.542			NA											19	2					0	0	0.007413	0	0
ERRFI1	54206	broad.mit.edu	37	1	8073505	8073505	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:8073505T>A	uc001aoz.2	-	4	1403	c.1154A>T	c.(1153-1155)AAT>ATT	p.N385I	ERRFI1_uc001apa.1_Missense_Mutation_p.N310I	NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	mitogen-inducible gene 6 protein	385					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	protein kinase binding|Rho GTPase activator activity			ovary(1)	1	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		CTTCTTCCCATTTTCAATAAT	0.413			NA											52	9					0	0	0.00361	0	0
H6PD	9563	broad.mit.edu	37	1	9324492	9324492	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:9324492C>A	uc001apt.2	+	5	2213	c.1940C>A	c.(1939-1941)CCC>CAC	p.P647H		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	647	6-phosphogluconolactonase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	GTCCGGATCCCCTACTACAAC	0.657			NA											26	8					2.79863e-10	3.74554e-10	0.004656	1	0
KIAA2013	90231	broad.mit.edu	37	1	11983315	11983315	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:11983315T>A	uc001atk.2	-	2	1459	c.1265A>T	c.(1264-1266)CAG>CTG	p.Q422L	KIAA2013_uc001atl.1_Missense_Mutation_p.Q422L	NM_138346	NP_612355	Q8IYS2	K2013_HUMAN	hypothetical protein LOC90231 precursor	422	Extracellular (Potential).					integral to membrane				ovary(1)	1	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00149)|all_lung(284;0.00189)|Breast(348;0.00586)|Colorectal(325;0.0062)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0556)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGCAGGATCTGCTGGACGGA	0.642			NA											11	1					0	0	0.001368	0	0
MIIP	60672	broad.mit.edu	37	1	12091341	12091341	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:12091341G>T	uc001ato.1	+	9	1141	c.961G>T	c.(961-963)GAC>TAC	p.D321Y		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	321										ovary(1)	1						GCTGGGCTGGGACATTTTTCC	0.607			NA											20	5					8.00594e-06	9.20134e-06	0.007413	1	0
CASP9	842	broad.mit.edu	37	1	15844622	15844622	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:15844622C>A	uc001awn.2	-	2	496	c.401G>T	c.(400-402)GGA>GTA	p.G134V	CASP9_uc001awm.1_Missense_Mutation_p.G134V|CASP9_uc001awo.2_Missense_Mutation_p.G134V|CASP9_uc001awp.2_5'UTR|CASP9_uc009voi.2_Intron|CASP9_uc010obm.1_Missense_Mutation_p.G51V|CASP9_uc001awq.2_Missense_Mutation_p.G51V	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	134					activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding	p.G134E(1)		central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		ACCAAATCCTCCAGAACCAAT	0.522			NA											29	12					1.30897e-18	2.21638e-18	0.009535	1	0
EPHA2	1969	broad.mit.edu	37	1	16455969	16455969	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:16455969C>A	uc001aya.1	-	16	2922	c.2785G>T	c.(2785-2787)GGC>TGC	p.G929C		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	929	SAM.|Cytoplasmic (Potential).|Negatively regulates interaction with ARHGEF16.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GCAGTGTAGCCGGCCGCCATG	0.652			NA											29	7					7.26314e-15	1.10499e-14	0.007291	1	0
ARHGEF19	128272	broad.mit.edu	37	1	16535535	16535535	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:16535535T>A	uc001ayc.1	-	2	152	c.15A>T	c.(13-15)CCA>CCT	p.P5P	ARHGEF19_uc009voo.1_5'Flank|ARHGEF19_uc001ayb.1_5'Flank	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	5					regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		GGGTAGCAGGTGGCCCACAGT	0.617			NA											13	4					0	0	0.004007	0	0
PADI6	353238	broad.mit.edu	37	1	17707550	17707550	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:17707550G>C	uc001bak.1	+	5	444	c.444G>C	c.(442-444)TGG>TGC	p.W148C		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	140					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	AGAAAAAATGGATCTGGGGTC	0.507			NA											5	3					0	0	0.000602	0	0
TAS1R2	80834	broad.mit.edu	37	1	19166267	19166267	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:19166267G>A	uc001bba.1	-	6	2347	c.2346C>T	c.(2344-2346)GCC>GCT	p.A782A		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	782	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CCCCGCTGTAGGCAGACATGA	0.567			NA											10	7					0	0	0.006214	0	0
TAS1R2	80834	broad.mit.edu	37	1	19166384	19166384	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:19166384G>A	uc001bba.1	-	6	2230	c.2229C>T	c.(2227-2229)TTC>TTT	p.F743F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	743	Helical; Name=5; (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	AGGCGAAGCTGAAACCCACCA	0.542			NA											19	3					0	0	0.010504	0	0
LDLRAP1	26119	broad.mit.edu	37	1	25880543	25880543	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:25880543G>A	uc001bkl.3	+	2	333	c.219G>A	c.(217-219)AGG>AGA	p.R73R		NM_015627	NP_056442	Q5SW96	ARH_HUMAN	low density lipoprotein receptor adaptor protein	73	PID.				amyloid precursor protein metabolic process|cholesterol homeostasis|cholesterol metabolic process|positive regulation of receptor-mediated endocytosis|receptor internalization|receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|regulation of establishment of protein localization in plasma membrane|regulation of protein binding	basal plasma membrane|cytosol|early endosome|internal side of plasma membrane|neurofilament|recycling endosome	beta-amyloid binding|clathrin binding|low-density lipoprotein particle receptor binding|phosphatidylinositol-4,5-bisphosphate binding|phosphotyrosine binding|protein binding, bridging|protein complex binding|receptor signaling complex scaffold activity|signaling adaptor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.63e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000728)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000969)|GBM - Glioblastoma multiforme(114;0.00914)|READ - Rectum adenocarcinoma(331;0.0649)		CCATCAAGAGGATCGTGGCTA	0.622			NA											15	4					0	0	0.006122	0	0
SFRS4	6429	broad.mit.edu	37	1	29508206	29508206	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:29508206C>A	uc001bro.2	-	1	432	c.59G>T	c.(58-60)CGC>CTC	p.R20L	SFRS4_uc010ofy.1_Missense_Mutation_p.R20L|SFRS4_uc009vtp.2_RNA	NM_005626	NP_005617	Q08170	SRSF4_HUMAN	splicing factor, arginine/serine-rich 4	20	RRM 1.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|RNA binding				0		Colorectal(325;0.00161)|Breast(348;0.0364)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0529)|Lung NSC(340;0.0654)|all_lung(284;0.074)|Ovarian(437;0.104)|Medulloblastoma(700;0.151)		Colorectal(126;1.01e-07)|COAD - Colon adenocarcinoma(152;6.21e-06)|STAD - Stomach adenocarcinoma(196;0.0196)|BRCA - Breast invasive adenocarcinoma(304;0.0531)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.138)		CTTAAAGAAGCGCTCCACATC	0.687			NA											21	3					2.21704e-12	3.18895e-12	0.00278	1	0
GRIK3	2899	broad.mit.edu	37	1	37346444	37346444	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:37346444T>C	uc001caz.2	-	3	476	c.341A>G	c.(340-342)CAG>CGG	p.Q114R	GRIK3_uc001cba.1_Missense_Mutation_p.Q114R	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	114	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GCAGGAGCCCTGTGATGGGCC	0.637			NA											7	5					0	0	0.001984	0	0
GRIK3	2899	broad.mit.edu	37	1	37356641	37356641	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:37356641G>T	uc001caz.2	-	2	307	c.172C>A	c.(172-174)CAT>AAT	p.H58N	GRIK3_uc001cba.1_Missense_Mutation_p.H58N	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	58	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CGAAAGGCATGCTCCTCGGCA	0.502			NA											69	19					2.69648e-15	4.16915e-15	0.00361	1	0
HIVEP3	59269	broad.mit.edu	37	1	42049210	42049210	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:42049210C>A	uc001cgz.3	-	4	2472	c.1259G>T	c.(1258-1260)GGC>GTC	p.G420V	HIVEP3_uc001cha.3_Missense_Mutation_p.G420V|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	420	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CCCACACTTGCCAAAGATGAT	0.612			NA											21	5					7.45023e-12	1.05458e-11	0.010504	1	0
YBX1	4904	broad.mit.edu	37	1	43166554	43166555	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:43166554_43166555CC>AA	uc001chs.2	+	7	1014_1015	c.843_844CC>AA	c.(841-846)TACCGC>TAAAGC	p.281_282YR>*S		NM_004559	NP_004550	P67809	YBOX1_HUMAN	nuclease sensitive element binding protein 1	281_282					CRD-mediated mRNA stabilization|negative regulation of transcription, DNA-dependent|nuclear mRNA splicing, via spliceosome|positive regulation of cell division|transcription from RNA polymerase II promoter	CRD-mediated mRNA stability complex|extracellular region|histone pre-mRNA 3'end processing complex|nucleoplasm|stress granule|U12-type spliceosomal complex	double-stranded DNA binding|protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			ovary(4)|upper_aerodigestive_tract(1)	5	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AACGTCGGTACCGCCGCAACTT	0.53			NA											7	36					0	0	0.004672	0	0
KIAA0467	23334	broad.mit.edu	37	1	43891740	43891741	+	Nonsense_Mutation	DNP	TG	TG	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:43891740_43891741TG>AT	uc001cjk.1	+	7	897_898	c.435_436TG>AT	c.(433-438)CATGAG>CAATAG	p.145_146HE>Q*	KIAA0467_uc009vws.1_Nonsense_Mutation_p.987_988HE>Q*	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	987_Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTGCGTCCATGAGATCCCTTT	0.554			NA											16	2					0	0	0.004672	0	0
FAM151A	338094	broad.mit.edu	37	1	55075530	55075530	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:55075530C>T	uc001cxn.2	-	8	1301	c.1169G>A	c.(1168-1170)GGC>GAC	p.G390D	ACOT11_uc001cxj.1_3'UTR|ACOT11_uc001cxl.1_3'UTR|ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	390						integral to membrane					0						CAGGATGTTGCCACTTGGAGT	0.602			NA											3	18					0	0	0.004672	0	0
LEPR	3953	broad.mit.edu	37	1	66075675	66075675	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:66075675G>T	uc001dci.2	+	13	2000	c.1798G>T	c.(1798-1800)GTT>TTT	p.V600F	LEPR_uc001dcg.2_Missense_Mutation_p.V600F|LEPR_uc001dch.2_Missense_Mutation_p.V600F|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.V600F|LEPR_uc001dck.2_Missense_Mutation_p.V600F	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	600	Extracellular (Potential).|Fibronectin type-III 2.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CAGTCTCCCAGTTCCAGACTT	0.398			NA											45	14					1.81118e-26	3.43883e-26	0.00361	1	0
INSL5	10022	broad.mit.edu	37	1	67263852	67263852	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:67263852C>A	uc001dcw.2	-	2	287	c.252G>T	c.(250-252)AAG>AAT	p.K84N		NM_005478	NP_005469	Q9Y5Q6	INSL5_HUMAN	insulin-like 5 precursor	84						extracellular region	hormone activity				0						AGGCATCCACCTTCGGAAGGT	0.458			NA											40	8					1.8453e-21	3.29699e-21	0.002522	1	0
RPE65	6121	broad.mit.edu	37	1	68912412	68912412	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:68912412G>A	uc001dei.1	-	3	280	c.226C>T	c.(226-228)CAT>TAT	p.H76Y		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	76					visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						TATGTGACATGTCCTTCTTTA	0.502			NA											15	2					0	0	0.00245	0	0
LRRC7	57554	broad.mit.edu	37	1	70504652	70504653	+	Missense_Mutation	DNP	GG	GG	CT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:70504652_70504653GG>CT	uc001dep.2	+	19	3061_3062	c.3031_3032GG>CT	c.(3031-3033)GGA>CTA	p.G1011L	LRRC7_uc009wbg.2_Missense_Mutation_p.G295L|LRRC7_uc001deq.2_Missense_Mutation_p.G252L	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1011						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GCTCACCTACGGAAGTAGTAAG	0.47			NA											12	4					0	0	0.004672	0	0
C1orf173	127254	broad.mit.edu	37	1	75097512	75097512	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:75097512G>T	uc001dgg.2	-	7	923	c.704C>A	c.(703-705)CCT>CAT	p.P235H	C1orf173_uc001dgi.3_Missense_Mutation_p.P29H	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	235										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AAGTGGAGGAGGAATAGGCAT	0.418			NA											25	10					5.45024e-15	8.3633e-15	0.00333	1	0
SLC44A5	204962	broad.mit.edu	37	1	75677192	75677192	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:75677192C>T	uc001dgu.2	-	23	2152	c.2008G>A	c.(2008-2010)GTC>ATC	p.V670I	SLC44A5_uc001dgt.2_Missense_Mutation_p.V670I|SLC44A5_uc001dgs.2_Missense_Mutation_p.V628I|SLC44A5_uc001dgr.2_Missense_Mutation_p.V628I|SLC44A5_uc010oqz.1_Missense_Mutation_p.V709I|SLC44A5_uc010ora.1_Missense_Mutation_p.V664I|SLC44A5_uc010orb.1_Missense_Mutation_p.V540I	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	670	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						ATTGCATAGACGCTGAAGAAC	0.403			NA											11	5					0	0	0.001368	0	0
ASB17	127247	broad.mit.edu	37	1	76397963	76397963	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:76397963G>T	uc001dhe.1	-	1	154	c.14C>A	c.(13-15)ACT>AAT	p.T5N	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	5					intracellular signal transduction					ovary(1)	1						ACATAATTTAGTAGATTTACT	0.363			NA											14	7					4.36969e-10	5.78294e-10	0.001855	1	0
COL24A1	255631	broad.mit.edu	37	1	86591275	86591275	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:86591275G>T	uc001dlj.2	-	3	786	c.744C>A	c.(742-744)TAC>TAA	p.Y248*	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Nonsense_Mutation_p.Y248*	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	248					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTTCAGGTTGGTATTTGTCTG	0.428			NA											35	7					3.76114e-14	5.67959e-14	0.004289	1	0
COL24A1	255631	broad.mit.edu	37	1	86591289	86591289	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:86591289G>T	uc001dlj.2	-	3	772	c.730C>A	c.(730-732)CAA>AAA	p.Q244K	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.Q244K	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	244					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTGTCTGCTTGGCGACACTGC	0.408			NA											28	7					1.16021e-09	1.51156e-09	0.007291	1	0
CLCA4	22802	broad.mit.edu	37	1	87036808	87036808	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:87036808C>A	uc009wcs.2	+	8	1275	c.1231C>A	c.(1231-1233)CTG>ATG	p.L411M	CLCA4_uc009wct.2_Missense_Mutation_p.L174M|CLCA4_uc009wcu.2_Missense_Mutation_p.L231M	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	411	VWFA.					apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		AGTACTGCTGCTGACTGATGG	0.433			NA											50	16					5.18031e-10	6.84937e-10	0.00361	1	0
CCDC18	343099	broad.mit.edu	37	1	93711761	93711761	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:93711761G>T	uc001dpq.2	+	22	3603	c.3435G>T	c.(3433-3435)CAG>CAT	p.Q1145H	CCDC18_uc009wdl.1_Missense_Mutation_p.Q662H	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	1026	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		GAGCAGCTCAGGTTGATTTTT	0.363			NA											31	12					1.16021e-09	1.51156e-09	0.007291	1	0
LPPR4	9890	broad.mit.edu	37	1	99767365	99767365	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:99767365G>T	uc001dse.2	+	6	984	c.878G>T	c.(877-879)TGC>TTC	p.C293F	LPPR4_uc010oue.1_Intron	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	293	Helical; (Potential).						phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		GGAATAATCTGCGGGCTAACA	0.378			NA											30	8					1.88708e-17	3.11741e-17	0.008361	1	0
COL11A1	1301	broad.mit.edu	37	1	103347291	103347291	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:103347291G>T	uc001dul.2	-	65	5320	c.5002C>A	c.(5002-5004)CCA>ACA	p.P1668T	COL11A1_uc001duk.2_Missense_Mutation_p.P864T|COL11A1_uc001dum.2_Missense_Mutation_p.P1680T|COL11A1_uc001dun.2_Missense_Mutation_p.P1629T|COL11A1_uc009weh.2_Missense_Mutation_p.P1552T	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1668	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CAACTTCCTGGTTTCTCCTTT	0.328			NA											17	4					1.00905e-13	1.49675e-13	0.008871	1	0
NTNG1	22854	broad.mit.edu	37	1	107691317	107691317	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:107691317G>A	uc001dvh.3	+	2	820	c.102G>A	c.(100-102)AAG>AAA	p.K34K	NTNG1_uc001dvf.3_Silent_p.K34K|NTNG1_uc010out.1_Silent_p.K34K|NTNG1_uc001dvc.3_Silent_p.K34K|NTNG1_uc001dvd.1_Silent_p.K34K	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	34					axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		ATTTGTGTAAGACTCAGATTT	0.458			NA											42	13					0	0	0.002522	0	0
GPSM2	29899	broad.mit.edu	37	1	109428168	109428168	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:109428168G>T	uc010ovc.1	+	2	520	c.24G>T	c.(22-24)ATG>ATT	p.M8I	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.M8I|GPSM2_uc010ove.1_Missense_Mutation_p.M8I	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	8					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		TGATAAGCATGAGAGAAGACC	0.299			NA											30	10					1.66425e-11	2.33487e-11	0.004878	1	0
AHCYL1	10768	broad.mit.edu	37	1	110551754	110551754	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:110551754C>T	uc001dyx.2	+	2	586	c.219C>T	c.(217-219)GAC>GAT	p.D73D	AHCYL1_uc010ovw.1_Silent_p.D26D|AHCYL1_uc001dyy.2_Silent_p.D26D|AHCYL1_uc010ovx.1_Silent_p.D26D	NM_006621	NP_006612	O43865	SAHH2_HUMAN	S-adenosylhomocysteine hydrolase-like 1	73	PEST (By similarity).				one-carbon metabolic process	endoplasmic reticulum	adenosylhomocysteinase activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0259)|Colorectal(144;0.123)|all cancers(265;0.134)|Epithelial(280;0.141)|LUSC - Lung squamous cell carcinoma(189;0.143)		CCTCCACTGACAGCTACAGTT	0.468			NA											21	3					0	0	0.001882	0	0
SPAG17	200162	broad.mit.edu	37	1	118526493	118526493	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:118526493G>T	uc001ehk.2	-	42	5881	c.5813C>A	c.(5812-5814)ACA>AAA	p.T1938K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1938						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		ATTTTTCTTTGTAAAAGAAGG	0.328			NA											11	3					0.000151284	0.000166741	0.001855	1	0
BCL9	607	broad.mit.edu	37	1	147090735	147090735	+	Silent	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:147090735A>C	uc001epq.2	+	8	1514	c.774A>C	c.(772-774)CCA>CCC	p.P258P	BCL9_uc010ozr.1_Silent_p.P184P	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	258	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					AGCCAACTCCACCCATTCCGG	0.592			NA	T	IGH@|IGL@	B-ALL								14	85					0	0	0.00278	0	0
SV2A	9900	broad.mit.edu	37	1	149884986	149884986	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:149884986C>A	uc001etg.2	-	2	898	c.407G>T	c.(406-408)CGG>CTG	p.R136L	SV2A_uc001eth.2_Missense_Mutation_p.R136L	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	136	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TGCCTCCCCCCGGCCCCCAGG	0.652			NA											32	33					3.99451e-17	6.52314e-17	0.009535	1	0
HORMAD1	84072	broad.mit.edu	37	1	150679041	150679041	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:150679041C>T	uc001evk.1	-	10	898	c.792G>A	c.(790-792)GAG>GAA	p.E264E	HORMAD1_uc001evl.1_Silent_p.E257E|HORMAD1_uc001evm.1_Silent_p.E184E	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	264				E -> G (in Ref. 1; CAG38536).	blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			TTGTATAATGCTCCTGTTCAT	0.299			NA											21	41					0	0	0.001882	0	0
PSMD4	5710	broad.mit.edu	37	1	151234661	151234661	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:151234661G>C	uc001exl.2	+	2	113	c.51G>C	c.(49-51)CGG>CGC	p.R17R	PSMD4_uc001exn.2_Silent_p.R17R	NM_002810	NP_002801	P55036	PSMD4_HUMAN	proteasome 26S non-ATPase subunit 4	17	VWFA.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding|zinc ion binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			AGTATATGCGGAATGGAGACT	0.493			NA											39	50					0	0	0.007835	0	0
RPTN	126638	broad.mit.edu	37	1	152128814	152128814	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:152128814C>T	uc001ezs.1	-	3	826	c.761G>A	c.(760-762)GGA>GAA	p.G254E		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	254	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						AGAGGCTTGTCCAAGTGTTTC	0.428			NA											88	145					0	0	0.00361	0	0
HRNR	388697	broad.mit.edu	37	1	152192465	152192465	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:152192465C>T	uc001ezt.1	-	3	1716	c.1640G>A	c.(1639-1641)CGA>CAA	p.R547Q		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	547	5.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACTCATGTCGGCCACGGCT	0.592			NA											115	110					0	0	0.00361	0	0
FLG	2312	broad.mit.edu	37	1	152284714	152284714	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:152284714G>C	uc001ezu.1	-	3	2684	c.2648C>G	c.(2647-2649)TCC>TGC	p.S883C	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	883	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGCCCACGGGAGGCATCAGA	0.567			NA							Ichthyosis				167	320					0	0	0.00361	0	0
SPRR1A	6698	broad.mit.edu	37	1	152957793	152957793	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:152957793C>A	uc009wnu.1	+	2	165	c.87C>A	c.(85-87)CCC>CCA	p.P29P	SPRR1A_uc001faw.2_Silent_p.P29P	NM_005987	NP_005978	P35321	SPR1A_HUMAN	small proline-rich protein 1A	29	2.|2 X 12 AA approximate repeats.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity				0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCCTCCACCCCAGGAACCAT	0.602			NA											64	61					3.07184e-27	5.91922e-27	0.00361	1	0
SPRR2D	6703	broad.mit.edu	37	1	153012687	153012687	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:153012687G>T	uc001fbb.2	-	2	196	c.136C>A	c.(136-138)CCA>ACA	p.P46T	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	46	3.|3 X 9 AA tandem repeats of P-K-C-P-[EQ]- P-C-P-[PS].				keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCTGAGGTGGGCAGGGCTGT	0.602			NA											129	121					2.51586e-40	5.2377e-40	0.00361	1	0
SPRR2B	6701	broad.mit.edu	37	1	153043211	153043211	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:153043211G>T	uc001fbg.2	-	2	168	c.105C>A	c.(103-105)CCC>CCA	p.P35P	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001017418	NP_001017418	P35325	SPR2B_HUMAN	small proline-rich protein 2B	35	3 X 9 AA tandem repeats of P-K-C-P-[EQ]- P-C-P-P.|2.				keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTGGTGGGCAGGGCTCAGGGC	0.617			NA											29	44					3.28156e-27	6.31478e-27	0.00361	1	0
ILF2	3608	broad.mit.edu	37	1	153640497	153640497	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:153640497C>A	uc001fcr.2	-	5	351	c.270G>T	c.(268-270)GTG>GTT	p.V90V	ILF2_uc010pdy.1_Silent_p.V52V|ILF2_uc009wok.2_Silent_p.V90V|ILF2_uc009wol.1_Silent_p.V52V	NM_004515	NP_004506	Q12905	ILF2_HUMAN	interleukin enhancer binding factor 2	90					immune response|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|ribonucleoprotein complex	ATP binding|DNA binding|double-stranded RNA binding|protein binding|transferase activity				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCCCTGGAGCCACAATCAGAT	0.338			NA											11	25					7.03913e-09	8.96576e-09	0.001368	1	0
GATAD2B	57459	broad.mit.edu	37	1	153790011	153790011	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:153790011C>A	uc001fdb.3	-	6	981	c.737G>T	c.(736-738)AGT>ATT	p.S246I		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	246						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			ACGGATGACACTGTGACCCTG	0.483			NA											11	18					0.000673444	0.000717266	0.008291	1	0
IL6R	3570	broad.mit.edu	37	1	154422387	154422387	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:154422387G>C	uc001fez.1	+	8	1434	c.997G>C	c.(997-999)GCA>CCA	p.A333P	IL6R_uc001ffa.1_Missense_Mutation_p.A333P	NM_000565	NP_000556	P08887	IL6RA_HUMAN	interleukin 6 receptor isoform 1 precursor	333	Extracellular (Potential).				acute-phase response|ciliary neurotrophic factor-mediated signaling pathway|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|endocrine pancreas development|hepatic immune response|negative regulation of collagen biosynthetic process|negative regulation of interleukin-8 production|positive regulation of activation of Janus kinase activity|positive regulation of anti-apoptosis|positive regulation of chemokine production|positive regulation of chemokine production|positive regulation of interleukin-6 production|positive regulation of leukocyte chemotaxis|positive regulation of MAPKKK cascade|positive regulation of osteoblast differentiation|positive regulation of smooth muscle cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of apoptosis	apical plasma membrane|basolateral plasma membrane|extracellular space|interleukin-6 receptor complex	ciliary neurotrophic factor binding|enzyme binding|protein homodimerization activity			ovary(3)|breast(1)	4	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TCTCTTTTAGGCACTTACTAC	0.313			NA											15	22					0	0	0.00499	0	0
IL6R	3570	broad.mit.edu	37	1	154437778	154437778	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:154437778G>T	uc001fez.1	+	10	1766	c.1329G>T	c.(1327-1329)TCG>TCT	p.S443S	IL6R_uc001ffa.1_3'UTR	NM_000565	NP_000556	P08887	IL6RA_HUMAN	interleukin 6 receptor isoform 1 precursor	443	Cytoplasmic (Potential).				acute-phase response|ciliary neurotrophic factor-mediated signaling pathway|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|endocrine pancreas development|hepatic immune response|negative regulation of collagen biosynthetic process|negative regulation of interleukin-8 production|positive regulation of activation of Janus kinase activity|positive regulation of anti-apoptosis|positive regulation of chemokine production|positive regulation of chemokine production|positive regulation of interleukin-6 production|positive regulation of leukocyte chemotaxis|positive regulation of MAPKKK cascade|positive regulation of osteoblast differentiation|positive regulation of smooth muscle cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of apoptosis	apical plasma membrane|basolateral plasma membrane|extracellular space|interleukin-6 receptor complex	ciliary neurotrophic factor binding|enzyme binding|protein homodimerization activity	p.S443S(1)		ovary(3)|breast(1)	4	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			ACAATACCTCGAGCCACAACC	0.622			NA											31	32					2.65835e-16	4.23906e-16	0.007291	1	0
HCN3	57657	broad.mit.edu	37	1	155252500	155252500	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:155252500G>T	uc001fjz.1	+	2	585	c.577G>T	c.(577-579)GAG>TAG	p.E193*	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_5'UTR	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	193	Extracellular (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGTGGAGCTGGAGCCACGGTT	0.612			NA											21	39					1.87028e-06	2.20653e-06	0.001882	1	0
NES	10763	broad.mit.edu	37	1	156642986	156642986	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:156642986C>A	uc001fpq.2	-	4	1127	c.994G>T	c.(994-996)GAG>TAG	p.E332*		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	332	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AATTGCAGCTCCAGCTTGGGG	0.587			NA											7	15					0.00198382	0.00209878	0.001984	1	0
FCRL5	83416	broad.mit.edu	37	1	157494099	157494099	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:157494099G>A	uc001fqu.2	-	10	2367	c.2209C>T	c.(2209-2211)CGC>TGC	p.R737C	FCRL5_uc009wsm.2_Missense_Mutation_p.R737C|FCRL5_uc010phv.1_Missense_Mutation_p.R737C|FCRL5_uc010phw.1_Missense_Mutation_p.R652C	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	737	Extracellular (Potential).|Ig-like C2-type 7.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ATCTCACTGCGCTGGGCCTCC	0.562			NA											26	46					0	0	0.004656	0	0
FCRL4	83417	broad.mit.edu	37	1	157555991	157555991	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:157555991C>A	uc001fqw.2	-	6	1238	c.1102G>T	c.(1102-1104)GTC>TTC	p.V368F	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	368	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				ATGCTCTGGACAGGGCCGTAG	0.453			NA									OREG0007229	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=FCRL4|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	38	45					7.53189e-24	1.3911e-23	0.007835	1	0
OR10T2	128360	broad.mit.edu	37	1	158368578	158368578	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158368578G>T	uc010pih.1	-	1	679	c.679C>A	c.(679-681)CTG>ATG	p.L227M		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					GGGATCTTCAGGATGGTGTTA	0.458			NA											15	22					3.27435e-08	4.07221e-08	0.00245	1	0
OR10K1	391109	broad.mit.edu	37	1	158435954	158435954	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158435954G>T	uc010pij.1	+	1	603	c.603G>T	c.(601-603)ATG>ATT	p.M201I		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCATATTCATGCTTGGTGTAT	0.483			NA											70	61					1.34159e-35	2.74882e-35	0.00361	1	0
OR10X1	128367	broad.mit.edu	37	1	158548787	158548787	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158548787G>A	uc010pin.1	-	1	903	c.903C>T	c.(901-903)ATC>ATT	p.I301I		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	301	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GGCTGAATATGATGGGGCTGA	0.408			NA											60	53					0	0	0.00361	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577002	158577002	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158577002G>A	uc010pio.1	+	1	774	c.774G>A	c.(772-774)GTG>GTA	p.V258V		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					CTTCCTTCGTGTACCTGAGGC	0.498			NA											123	98					0	0	0.00361	0	0
SPTA1	6708	broad.mit.edu	37	1	158585084	158585084	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158585084C>A	uc001fst.1	-	48	6909	c.6710G>T	c.(6709-6711)GGA>GTA	p.G2237V		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2237	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTGAGCCAATCCAATGGTGCT	0.527			NA											70	123					3.07281e-33	6.18909e-33	0.00361	1	0
SPTA1	6708	broad.mit.edu	37	1	158639547	158639547	+	Silent	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158639547A>T	uc001fst.1	-	13	1828	c.1629T>A	c.(1627-1629)ATT>ATA	p.I543I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	543	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGTCATCACCAATCAATTTGG	0.413			NA											69	114					0	0	0.00361	0	0
SPTA1	6708	broad.mit.edu	37	1	158651381	158651381	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158651381C>T	uc001fst.1	-	4	666	c.467G>A	c.(466-468)CGG>CAG	p.R156Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	156	Spectrin 2.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTTCAGGGCCCGCAGCAACTG	0.527			NA											65	108					0	0	0.00361	0	0
OR6K2	81448	broad.mit.edu	37	1	158669545	158669545	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158669545C>A	uc001fsu.1	-	1	898	c.898G>T	c.(898-900)GAA>TAA	p.E300*		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TTTATAGCTTCTTTTATTTCT	0.378			NA											12	22					3.07112e-06	3.59348e-06	0.000978	1	0
OR6N1	128372	broad.mit.edu	37	1	158735961	158735961	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158735961G>A	uc010piq.1	-	1	512	c.512C>T	c.(511-513)CCC>CTC	p.P171L		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AATGCGATTGGGGCCACAGAA	0.468			NA											31	42					0	0	0.007291	0	0
PYHIN1	149628	broad.mit.edu	37	1	158911776	158911776	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:158911776C>A	uc001ftb.2	+	5	834	c.589C>A	c.(589-591)CCA>ACA	p.P197T	PYHIN1_uc001ftc.2_Missense_Mutation_p.P188T|PYHIN1_uc001ftd.2_Missense_Mutation_p.P197T|PYHIN1_uc001fte.2_Missense_Mutation_p.P188T	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	197					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					GAGCCTAAAACCATTGGCCAA	0.388			NA											12	10					0.00010058	0.000111028	0.001368	1	0
OLFML2B	25903	broad.mit.edu	37	1	161970018	161970018	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:161970018G>T	uc001gbu.2	-	5	1258	c.834C>A	c.(832-834)CCC>CCA	p.P278P	OLFML2B_uc010pkq.1_Silent_p.P279P	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	278										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GCCTCTGCAGGGGCCGCTGTG	0.597			NA											25	40					2.79863e-10	3.74554e-10	0.004656	1	0
OLFML2B	25903	broad.mit.edu	37	1	161989882	161989882	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:161989882A>T	uc001gbu.2	-	2	689	c.265T>A	c.(265-267)TGC>AGC	p.C89S	OLFML2B_uc010pkq.1_Missense_Mutation_p.C89S	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	89										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			ATCCTCTGGCAGGCATCCCGG	0.587			NA											28	25					0	0	0.00632	0	0
ILDR2	387597	broad.mit.edu	37	1	166904641	166904641	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:166904641G>A	uc001gdx.1	-	6	833	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	259	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						GGACAGAGGGGATGGAGTAAG	0.597			NA											33	27					0	0	0.004289	0	0
GPR161	23432	broad.mit.edu	37	1	168054915	168054915	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:168054915C>T	uc001gfc.2	-	8	1758	c.1444G>A	c.(1444-1446)GAG>AAG	p.E482K	GPR161_uc001gfb.2_Missense_Mutation_p.E350K|GPR161_uc010pll.1_Missense_Mutation_p.E392K|GPR161_uc010plm.1_Missense_Mutation_p.E368K|GPR161_uc009wvo.2_Missense_Mutation_p.E499K|GPR161_uc001gfd.2_Missense_Mutation_p.E482K|GPR161_uc010pln.1_Missense_Mutation_p.E502K	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	482	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					GGCAAAGCCTCCTCCCCAAAT	0.567			NA											56	70					0	0	0.00361	0	0
TNN	63923	broad.mit.edu	37	1	175049430	175049430	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:175049430C>A	uc001gkl.1	+	4	1029	c.916C>A	c.(916-918)CAG>AAG	p.Q306K	TNN_uc010pmx.1_Missense_Mutation_p.Q306K	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	306	Fibronectin type-III 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTCTGGGAAGCAGATCCAAGT	0.547			NA											16	41					4.14922e-12	5.92033e-12	0.004007	1	0
TNR	7143	broad.mit.edu	37	1	175331857	175331857	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:175331857G>T	uc001gkp.1	-	12	2877	c.2796C>A	c.(2794-2796)AGC>AGA	p.S932R	TNR_uc009wwu.1_Missense_Mutation_p.S932R	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	932	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CGCTGTTGAGGCTGATTTCGT	0.552			NA											43	51					1.15183e-24	2.15251e-24	0.009718	1	0
TNR	7143	broad.mit.edu	37	1	175360456	175360456	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:175360456C>A	uc001gkp.1	-	5	1556	c.1475G>T	c.(1474-1476)CGC>CTC	p.R492L	TNR_uc009wwu.1_Missense_Mutation_p.R492L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	492	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGGGGGGCTGCGGGCCTGTTC	0.547			NA											35	58					3.62531e-18	6.08778e-18	0.004289	1	0
PAPPA2	60676	broad.mit.edu	37	1	176738765	176738765	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:176738765C>G	uc001gkz.2	+	16	5510	c.4346C>G	c.(4345-4347)TCT>TGT	p.S1449C	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1449	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTCACATGTTCTTCTGGGCAC	0.478			NA											39	48					0	0	0.007835	0	0
ASTN1	460	broad.mit.edu	37	1	176993816	176993816	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:176993816G>T	uc001glc.2	-	6	1385	c.1173C>A	c.(1171-1173)ATC>ATA	p.I391I	ASTN1_uc001glb.1_Silent_p.I391I|ASTN1_uc001gld.1_Silent_p.I391I|ASTN1_uc009wwx.1_Silent_p.I391I|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	391	Helical; (Potential).				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CACAGCTGGTGATGCTGATCA	0.512			NA											23	23					1.50039e-11	2.10706e-11	0.001882	1	0
ASTN1	460	broad.mit.edu	37	1	177001871	177001871	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:177001871C>T	uc001glc.2	-	3	798	c.586G>A	c.(586-588)GAG>AAG	p.E196K	ASTN1_uc001glb.1_Missense_Mutation_p.E196K|ASTN1_uc001gld.1_Missense_Mutation_p.E196K|ASTN1_uc009wwx.1_Missense_Mutation_p.E196K|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	196					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TTGGCTGCCTCAGCACTGGCA	0.627			NA											35	42					0	0	0.003271	0	0
ASTN1	460	broad.mit.edu	37	1	177133544	177133544	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:177133544G>T	uc001glc.2	-	1	481	c.269C>A	c.(268-270)CCC>CAC	p.P90H	ASTN1_uc001glb.1_Missense_Mutation_p.P90H|ASTN1_uc001gld.1_Missense_Mutation_p.P90H|ASTN1_uc009wwx.1_Missense_Mutation_p.P90H	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	90					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CACGAAGTAGGGCAGCTCCGT	0.692			NA											3	6					0.00024832	0.000270549	0.009096	1	0
RALGPS2	55103	broad.mit.edu	37	1	178802638	178802638	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:178802638G>T	uc001glz.2	+	8	898	c.560G>T	c.(559-561)AGA>ATA	p.R187I	RALGPS2_uc001gly.1_Missense_Mutation_p.R187I|RALGPS2_uc010pnb.1_Missense_Mutation_p.R187I	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	187	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						AAAAGACTCAGAGACTATATA	0.303			NA											30	41					1.13719e-10	1.54814e-10	0.008361	1	0
C1orf125	126859	broad.mit.edu	37	1	179338016	179338016	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:179338016C>A	uc001gmo.2	+	3	306	c.179C>A	c.(178-180)CCC>CAC	p.P60H	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Intron|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.P60H	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	60											0						GAGTTCATTCCCAAAGAAGTT	0.398			NA											15	25					1.3612e-06	1.61261e-06	0.003163	1	0
NPHS2	7827	broad.mit.edu	37	1	179520369	179520369	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:179520369G>T	uc001gmq.3	-	8	1176	c.1091C>A	c.(1090-1092)CCA>CAA	p.P364Q	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmo.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron|NPHS2_uc009wxi.2_Missense_Mutation_p.P296Q|C1orf125_uc001gmr.2_RNA	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	364	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						GGAAGGACTTGGGAAGGGGAG	0.483			NA											24	54					6.21321e-17	1.00885e-16	0.00278	1	0
NPHS2	7827	broad.mit.edu	37	1	179544726	179544726	+	Missense_Mutation	SNP	C	C	A	rs74315345		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:179544726C>A	uc001gmq.3	-	1	359	c.274G>T	c.(274-276)GGT>TGT	p.G92C	NPHS2_uc009wxi.2_Missense_Mutation_p.G92C	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	92	Cytoplasmic (Potential).		G -> C (in NPHS2).		excretion	integral to plasma membrane	protein binding				0						GAATCCGTACCTTCCTCGGGC	0.632			NA											15	17					1.45105e-14	2.20288e-14	0.006122	1	0
CACNA1E	777	broad.mit.edu	37	1	181689992	181689992	+	Splice_Site	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:181689992G>C	uc001gow.2	+	15	2121	c.1956_splice	c.e15+1	p.Q652_splice	CACNA1E_uc009wxs.2_Splice_Site_p.Q559_splice	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,						energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGTGTTCCAGGTATGAGGCCA	0.438			NA											8	8					0	0	0.004482	0	0
C1orf21	81563	broad.mit.edu	37	1	184446562	184446562	+	Translation_Start_Site	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:184446562T>A	uc001gqv.1	+	2	396	c.-81T>A	c.(-83--79)CTTTG>CTATG			NM_030806	NP_110433	Q9H246	CA021_HUMAN	chromosome 1 open reading frame 21												0		Breast(1374;0.00262)		Colorectal(1306;4.8e-08)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)		TGGATTTTCTTTGTGTTTAAA	0.468			NA											12	8					0	0	0.000978	0	0
HMCN1	83872	broad.mit.edu	37	1	186083236	186083236	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:186083236C>A	uc001grq.1	+	73	11486	c.11257C>A	c.(11257-11259)CTA>ATA	p.L3753I		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3753	Ig-like C2-type 36.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGGAGCTGTTCTAGCTGGGAA	0.368			NA											43	44					2.00842e-17	3.31401e-17	0.002522	1	0
TPR	7175	broad.mit.edu	37	1	186310292	186310292	+	Splice_Site	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:186310292C>T	uc001grv.2	-	29	4186	c.3889_splice	c.e29-1	p.V1297_splice		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR						carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		GTTTCCTCACCTGAAAATCAT	0.353			NA	T	NTRK1	papillary thyroid								24	19					0	0	0.002299	0	0
KCNT2	343450	broad.mit.edu	37	1	196227369	196227369	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:196227369C>A	uc001gtd.1	-	26	3226	c.3166G>T	c.(3166-3168)GTG>TTG	p.V1056L	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.V989L|KCNT2_uc001gtf.1_Missense_Mutation_p.V1032L|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Missense_Mutation_p.V560L	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1056	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CTATTTTTCACAAGTTCAGCA	0.398			NA											27	32					3.69857e-22	6.66678e-22	0.008361	1	0
CFHR3	10878	broad.mit.edu	37	1	196748352	196748352	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:196748352G>C	uc001gtl.2	+	2	206	c.119G>C	c.(118-120)AGA>ACA	p.R40T	CFHR3_uc001gtk.2_Missense_Mutation_p.R40T|CFHR3_uc010poy.1_Missense_Mutation_p.R40T|CFHR1_uc001gtm.2_Missense_Mutation_p.R3T	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	40	Sushi 1.					extracellular space					0						AATATGCGTAGACCATACTTT	0.323			NA											27	36					0	0	0.00632	0	0
ZBTB41	360023	broad.mit.edu	37	1	197128671	197128671	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:197128671G>A	uc001gtx.1	-	10	2617	c.2548C>T	c.(2548-2550)CGA>TGA	p.R850*	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	850					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						TCCGCTGCTCGTGGATAATCA	0.458			NA											32	61					0	0	0.003271	0	0
LHX9	56956	broad.mit.edu	37	1	197890707	197890707	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:197890707C>A	uc001guk.1	+	3	1088	c.651C>A	c.(649-651)AAC>AAA	p.N217K	LHX9_uc001gui.1_Missense_Mutation_p.N208K|LHX9_uc001guj.1_Missense_Mutation_p.N223K	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	217					motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						CTTACTTCAACGGTACGGGCA	0.632			NA											13	16					4.36969e-10	5.78294e-10	0.001855	1	0
PPP1R12B	4660	broad.mit.edu	37	1	202462446	202462446	+	Splice_Site	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:202462446G>T	uc001gya.1	+	15	2289	c.2145_splice	c.e15+1	p.E715_splice	PPP1R12B_uc001gxz.1_Splice_Site_p.E715_splice|PPP1R12B_uc001gyb.1_Splice_Site|PPP1R12B_uc001gyc.1_Splice_Site	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)						regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			GGATGAAGAGGTGAGCTCATT	0.532			NA											17	1					5.03518e-11	6.96126e-11	0.007413	1	0
ZC3H11A	9877	broad.mit.edu	37	1	203798748	203798748	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:203798748A>G	uc001hac.2	+	8	1084	c.468A>G	c.(466-468)GTA>GTG	p.V156V	ZC3H11A_uc001had.2_Silent_p.V156V|ZC3H11A_uc001hae.2_Silent_p.V156V|ZC3H11A_uc001haf.2_Silent_p.V156V|ZC3H11A_uc010pqm.1_Silent_p.V102V|ZC3H11A_uc001hag.1_Silent_p.V156V	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	156							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CACCAGTTGTAATTAATGCTG	0.438			NA											70	13					0	0	0.00361	0	0
LRRN2	10446	broad.mit.edu	37	1	204588013	204588013	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:204588013G>T	uc001hbe.1	-	3	1496	c.1108C>A	c.(1108-1110)CCC>ACC	p.P370T	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.P370T|LRRN2_uc009xbf.1_Missense_Mutation_p.P370T|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	370	Extracellular (Potential).|LRRCT.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			CAGCGGATGGGGTTGCCGTGG	0.632			NA											39	12					4.14481e-20	7.2331e-20	0.00623	1	0
NFASC	23114	broad.mit.edu	37	1	204957917	204957917	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:204957917C>A	uc001hbj.2	+	23	3078	c.2750C>A	c.(2749-2751)CCA>CAA	p.P917Q	NFASC_uc010pra.1_Missense_Mutation_p.P1020Q|NFASC_uc001hbi.2_Missense_Mutation_p.P1020Q|NFASC_uc010prb.1_Missense_Mutation_p.P1035Q|NFASC_uc010prc.1_Missense_Mutation_p.P591Q|NFASC_uc001hbk.1_Missense_Mutation_p.P830Q|NFASC_uc001hbl.1_Missense_Mutation_p.P167Q|NFASC_uc001hbm.1_Missense_Mutation_p.P63Q|NFASC_uc001hbn.1_Missense_Mutation_p.P63Q	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GAGGAGTCACCAGCACCCCCG	0.592			NA											35	8					2.32173e-10	3.11607e-10	0.004878	1	0
TRAF3IP3	80342	broad.mit.edu	37	1	209933636	209933636	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:209933636C>A	uc001hho.2	+	3	542	c.252C>A	c.(250-252)GCC>GCA	p.A84A	TRAF3IP3_uc001hhl.2_Silent_p.A84A|TRAF3IP3_uc001hhm.1_Silent_p.A84A|TRAF3IP3_uc001hhn.2_Silent_p.A84A|TRAF3IP3_uc009xcr.2_Silent_p.A84A	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	84	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		ATCCCCAGGCCAGGGAGCAAG	0.602			NA											9	5					0.000442599	0.000474237	0.006214	1	0
HHAT	55733	broad.mit.edu	37	1	210577926	210577926	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:210577926C>T	uc009xcx.2	+	6	753	c.587C>T	c.(586-588)TCG>TTG	p.S196L	HHAT_uc010psq.1_Intron|HHAT_uc001hhz.3_Missense_Mutation_p.S196L|HHAT_uc010psr.1_Missense_Mutation_p.S197L|HHAT_uc010pss.1_Missense_Mutation_p.S151L|HHAT_uc009xcy.2_Missense_Mutation_p.S131L|HHAT_uc010pst.1_Missense_Mutation_p.S133L|HHAT_uc010psu.1_Missense_Mutation_p.S131L	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	196					multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		CCTGCTGCATCGACCTCCTAC	0.532			NA											42	4					0	0	0.00361	0	0
HHIPL2	79802	broad.mit.edu	37	1	222700385	222700385	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:222700385C>A	uc001hnh.1	-	7	1789	c.1731G>T	c.(1729-1731)CTG>CTT	p.L577L		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	577					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CCAGGAAATACAGCTCCCCTA	0.443			NA											9	2					0.000442599	0.000474237	0.006214	1	0
EPHX1	2052	broad.mit.edu	37	1	226032925	226032925	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:226032925C>A	uc001hpk.2	+	9	1325	c.1245C>A	c.(1243-1245)TTC>TTA	p.F415L	EPHX1_uc001hpl.2_Missense_Mutation_p.F415L	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1	415					aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					GGGTGAGGTTCAAGTACCCAA	0.557			NA											27	13					7.41945e-09	9.4081e-09	0.005443	1	0
TRIM67	440730	broad.mit.edu	37	1	231342533	231342533	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:231342533G>A	uc009xfn.1	+	7	1858	c.1816G>A	c.(1816-1818)GAT>AAT	p.D606N		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	606	B30.2/SPRY.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				GCAGACATCCGATGGTGAGCA	0.502			NA											14	3					0	0	0.001855	0	0
FMN2	56776	broad.mit.edu	37	1	240370313	240370313	+	Missense_Mutation	SNP	G	G	A	rs140911005		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:240370313G>A	uc010pyd.1	+	5	2426	c.2201G>A	c.(2200-2202)CGG>CAG	p.R734Q	FMN2_uc010pye.1_Missense_Mutation_p.R738Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	734					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGGAAGTACGGCATCATAGG	0.557			NA											13	5					0	0	0.001368	0	0
EXO1	9156	broad.mit.edu	37	1	242021860	242021860	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:242021860G>T	uc001hzh.2	+	8	1136	c.596G>T	c.(595-597)CGG>CTG	p.R199L	EXO1_uc001hzi.2_Missense_Mutation_p.R199L|EXO1_uc001hzj.2_Missense_Mutation_p.R199L|EXO1_uc009xgq.2_Missense_Mutation_p.R199L	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	199	I-domain.|Interaction with MSH3.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			GATCAAGCTCGGCTAGGAATG	0.423			NA						Direct_reversal_of_damage|Editing_and_processing_nucleases					40	5					2.68985e-26	5.09355e-26	0.00361	1	0
AKT3	10000	broad.mit.edu	37	1	243727068	243727068	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:243727068G>T	uc001iab.1	-	9	983	c.902C>A	c.(901-903)GCC>GAC	p.A301D	AKT3_uc001hzz.1_Missense_Mutation_p.A301D	NM_005465	NP_005456	Q9Y243	AKT3_HUMAN	AKT3 kinase isoform 1	301	Protein kinase.				signal transduction	Golgi apparatus|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_cancers(71;0.000307)|all_epithelial(71;0.000374)|all_lung(81;0.0323)|Ovarian(71;0.0619)|all_neural(11;0.101)|Lung NSC(105;0.168)	all_cancers(173;0.0274)	all cancers(7;4.3e-08)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00196)			CTTCATGGTGGCTGCATCTGT	0.393			NA											40	8					7.63091e-17	1.23342e-16	0.007835	1	0
OR1C1	26188	broad.mit.edu	37	1	247921270	247921270	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:247921270C>G	uc010pza.1	-	1	439	c.439G>C	c.(439-441)GGA>CGA	p.G147R		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AGCCACAGTCCAGCCACTAGC	0.493			NA											29	9					0	0	0.004289	0	0
OR2L13	284521	broad.mit.edu	37	1	248262901	248262901	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:248262901C>A	uc001ids.2	+	3	561	c.224C>A	c.(223-225)ACC>AAC	p.T75N		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			TACATCTCCACCACCGTCCCC	0.542			NA											87	19					5.14759e-42	1.0748e-41	0.00361	1	0
OR2M2	391194	broad.mit.edu	37	1	248343692	248343692	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:248343692C>T	uc010pzf.1	+	1	405	c.405C>T	c.(403-405)CTC>CTT	p.L135L		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATACCAATCTCATGAATCCTA	0.403			NA											113	36					0	0	0.00361	0	0
OR2T35	403244	broad.mit.edu	37	1	248801912	248801912	+	Silent	SNP	C	C	G	rs146851066	by1000genomes	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:248801912C>G	uc001ies.1	-	1	648	c.648G>C	c.(646-648)GTG>GTC	p.V216V		NM_001001827	NP_001001827	Q8NGX2	O2T35_HUMAN	olfactory receptor, family 2, subfamily T,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;2.04e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCGTGTAGGACACAGAGATGA	0.542			NA											3	62					0	0	0.009096	0	0
ITIH5	80760	broad.mit.edu	37	10	7621837	7621837	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:7621837G>A	uc001ijq.2	-	9	1378	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I	ITIH5_uc001ijp.2_Silent_p.I219I|ITIH5_uc001ijr.1_Silent_p.I433I	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	433	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CAATGGTGAAGATGCAGACTT	0.617			NA											23	15					0	0	0.00333	0	0
GATA3	2625	broad.mit.edu	37	10	8111517	8111517	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:8111517G>C	uc001ika.2	+	5	1560	c.1003G>C	c.(1003-1005)GAC>CAC	p.D335H	GATA3_uc001ijz.2_Missense_Mutation_p.D336H	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	335	GATA-type 2.				aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding	p.D336fs*17(1)		breast(17)|ovary(3)|central_nervous_system(2)	22						TGCCAATGGGGACCCTGTCTG	0.562			NA	F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						20	14					0	0	0.007413	0	0
ITGA8	8516	broad.mit.edu	37	10	15573122	15573122	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:15573122G>A	uc001ioc.1	-	28	2909	c.2909C>T	c.(2908-2910)TCC>TTC	p.S970F	ITGA8_uc010qcb.1_Missense_Mutation_p.S955F	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	970	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GGACACCAGGGATGCAAGAGC	0.323			NA											12	29					0	0	0.000978	0	0
VIM	7431	broad.mit.edu	37	10	17276749	17276749	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:17276749C>T	uc001iou.2	+	6	1353	c.940C>T	c.(940-942)CAG>TAG	p.Q314*	VIM_uc001iov.1_Nonsense_Mutation_p.Q314*|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Nonsense_Mutation_p.Q314*|VIM_uc001ioy.1_Nonsense_Mutation_p.Q314*|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Intron|VIM_uc001ipc.1_Nonsense_Mutation_p.Q314*	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	314	Rod.|Coil 2.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						CCAGGCAAAGCAGGAGTCCAC	0.517			NA											43	21					0	0	0.00874	0	0
PLXDC2	84898	broad.mit.edu	37	10	20506453	20506453	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:20506453T>C	uc001iqg.1	+	11	1858	c.1221T>C	c.(1219-1221)ACT>ACC	p.T407T	PLXDC2_uc001iqh.1_Silent_p.T358T|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	407	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						GGGTCCTAACTACCACCAGAA	0.423			NA											17	7					0	0	0.008871	0	0
PLXDC2	84898	broad.mit.edu	37	10	20534321	20534321	+	Missense_Mutation	SNP	G	G	T	rs140442189		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:20534321G>T	uc001iqg.1	+	13	1997	c.1360G>T	c.(1360-1362)GCT>TCT	p.A454S	PLXDC2_uc001iqh.1_Missense_Mutation_p.A405S|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	454	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						AACCCTCCACGCTGGCCTCAT	0.498			NA											20	30					3.99206e-14	6.01554e-14	0.007413	1	0
THNSL1	79896	broad.mit.edu	37	10	25313812	25313812	+	Nonsense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:25313812A>T	uc001isi.3	+	3	1989	c.1660A>T	c.(1660-1662)AGA>TGA	p.R554*	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	554					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	TCTAAGGGAAAGAAAACTAGC	0.343			NA											10	26					0	0	0.006214	0	0
GPR158	57512	broad.mit.edu	37	10	25840014	25840014	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:25840014G>T	uc001isj.2	+	6	1574	c.1514G>T	c.(1513-1515)AGG>ATG	p.R505M		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	505	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AAACTTCACAGGTATATACAT	0.408			NA											12	29					7.03913e-09	8.96576e-09	0.001368	1	0
GPR158	57512	broad.mit.edu	37	10	25887098	25887098	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:25887098C>T	uc001isj.2	+	11	2603	c.2543C>T	c.(2542-2544)ACA>ATA	p.T848I	GPR158_uc001isk.2_Missense_Mutation_p.T223I	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	848	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GAAAATTCCACACTGGAATCC	0.493			NA											54	45					0	0	0.00361	0	0
MYO3A	53904	broad.mit.edu	37	10	26446279	26446279	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:26446279A>T	uc001isn.2	+	26	3194	c.2834A>T	c.(2833-2835)CAA>CTA	p.Q945L	MYO3A_uc009xko.1_Missense_Mutation_p.Q945L|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	945	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GTGGTGGGCCAACCTCATTTT	0.383			NA											17	9					0	0	0.007413	0	0
RBP3	5949	broad.mit.edu	37	10	48388110	48388110	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:48388110G>C	uc001jez.2	-	1	2882	c.2768C>G	c.(2767-2769)GCC>GGC	p.A923G		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	923	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TATGGAAAGGGCTTCGCTCAT	0.622			NA											19	16					0	0	0.006122	0	0
RBP3	5949	broad.mit.edu	37	10	48388252	48388252	+	Missense_Mutation	SNP	C	C	G	rs138240045		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:48388252C>G	uc001jez.2	-	1	2740	c.2626G>C	c.(2626-2628)GCA>CCA	p.A876P		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	876	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	ACAGAGAGTGCGCCTCCGGCC	0.652			NA											8	11					0	0	0.004482	0	0
RBP3	5949	broad.mit.edu	37	10	48388891	48388892	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:48388891_48388892GG>TT	uc001jez.2	-	1	2100_2101	c.1986_1987CC>AA	c.(1984-1989)GCCCTC>GCAATC	p.L663I		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	663	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GCCCGCAGGAGGGCACTGGTCT	0.668			NA											3	13					0	0	0.004672	0	0
OGDHL	55753	broad.mit.edu	37	10	50964945	50964945	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:50964945G>T	uc001jie.2	-	3	394	c.252C>A	c.(250-252)GGC>GGA	p.G84G	OGDHL_uc009xog.2_Silent_p.G111G|OGDHL_uc010qgt.1_Intron|OGDHL_uc010qgu.1_Intron|OGDHL_uc009xoh.2_5'UTR	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	84					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GCTGAGCAGAGCCAGAAAAGG	0.592			NA											17	20					2.48551e-13	3.66014e-13	0.00499	1	0
PCDH15	65217	broad.mit.edu	37	10	55566681	55566681	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:55566681G>A	uc010qhq.1	-	36	5102	c.4707C>T	c.(4705-4707)TCC>TCT	p.S1569S	PCDH15_uc010qhr.1_Silent_p.S1564S	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	422	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTCGAACAGGGGAAGCAACTT	0.458			NA								HNSCC(58;0.16)			69	47					0	0	0.00361	0	0
ZNF365	22891	broad.mit.edu	37	10	64219554	64219554	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:64219554G>C	uc001jmc.2	+	4	1294	c.979G>C	c.(979-981)GAG>CAG	p.E327Q	ZNF365_uc001jmb.3_Missense_Mutation_p.E327Q	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					CCTGGAATTGGAGGTAAAGCC	0.557			NA											4	2					0	0	0.000602	0	0
MYPN	84665	broad.mit.edu	37	10	69881591	69881591	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:69881591C>A	uc001jnm.3	+	3	581	c.396C>A	c.(394-396)CCC>CCA	p.P132P	MYPN_uc001jnl.1_Silent_p.P132P|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Silent_p.P132P|MYPN_uc001jnp.1_Silent_p.P132P|MYPN_uc009xps.2_Silent_p.P132P|MYPN_uc009xpt.2_Silent_p.P132P|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	132	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AAGAAAGCCCCCAGGAGGCAA	0.433			NA											14	10					1.15088e-07	1.40192e-07	0.004007	1	0
COL13A1	1305	broad.mit.edu	37	10	71647246	71647246	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:71647246C>G	uc001jpr.1	+	6	1057	c.521C>G	c.(520-522)CCG>CGG	p.P174R	COL13A1_uc001jqj.1_Missense_Mutation_p.P174R|COL13A1_uc001jps.1_Missense_Mutation_p.P145R|COL13A1_uc001jpt.1_Missense_Mutation_p.P174R|COL13A1_uc001jpu.1_Missense_Mutation_p.P174R|COL13A1_uc001jpv.1_Missense_Mutation_p.P174R|COL13A1_uc001jpx.1_Missense_Mutation_p.P174R|COL13A1_uc001jpw.1_Missense_Mutation_p.P162R|COL13A1_uc001jpy.1_Missense_Mutation_p.P153R|COL13A1_uc001jpz.1_Missense_Mutation_p.P136R|COL13A1_uc001jqa.1_Missense_Mutation_p.P136R|COL13A1_uc001jqc.1_Missense_Mutation_p.P174R|COL13A1_uc001jqb.1_Missense_Mutation_p.P145R|COL13A1_uc001jql.2_Missense_Mutation_p.P174R|COL13A1_uc001jqd.1_Missense_Mutation_p.P162R|COL13A1_uc001jqe.1_Missense_Mutation_p.P157R|COL13A1_uc001jqf.1_Missense_Mutation_p.P174R|COL13A1_uc001jqg.1_Missense_Mutation_p.P174R|COL13A1_uc001jqh.1_Missense_Mutation_p.P174R|COL13A1_uc001jqi.1_Missense_Mutation_p.P174R|COL13A1_uc010qjf.1_5'UTR|COL13A1_uc001jqk.1_Missense_Mutation_p.P34R	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	174	Extracellular (Potential).|Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	CCTGGATTTCCGGTAAGTGGA	0.493			NA											6	7					0	0	0.00308	0	0
COL13A1	1305	broad.mit.edu	37	10	71690197	71690197	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:71690197C>A	uc001jpr.1	+	28	2075	c.1539C>A	c.(1537-1539)CCC>CCA	p.P513P	COL13A1_uc001jqj.1_Silent_p.P513P|COL13A1_uc001jps.1_Silent_p.P484P|COL13A1_uc001jpt.1_Silent_p.P472P|COL13A1_uc001jpu.1_Silent_p.P494P|COL13A1_uc001jpv.1_Silent_p.P513P|COL13A1_uc001jpx.1_Silent_p.P491P|COL13A1_uc001jpw.1_Silent_p.P460P|COL13A1_uc001jpy.1_Silent_p.P451P|COL13A1_uc001jpz.1_Silent_p.P456P|COL13A1_uc001jqa.1_Silent_p.P453P|COL13A1_uc001jqc.1_Silent_p.P513P|COL13A1_uc001jqb.1_Silent_p.P462P|COL13A1_uc001jql.2_Silent_p.P513P|COL13A1_uc001jqd.1_Silent_p.P501P|COL13A1_uc001jqe.1_Silent_p.P496P|COL13A1_uc001jqf.1_Silent_p.P494P|COL13A1_uc001jqg.1_Silent_p.P491P|COL13A1_uc001jqh.1_Silent_p.P513P|COL13A1_uc001jqi.1_Silent_p.P513P|COL13A1_uc010qjf.1_Silent_p.P303P	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	513	Extracellular (Potential).|Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	CTCCTGGTCCCCAAGGCCCCC	0.552			NA											10	8					1.08611e-07	1.32871e-07	0.000978	1	0
PRF1	5551	broad.mit.edu	37	10	72360455	72360455	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:72360455C>A	uc009xqg.2	-	2	365	c.204G>T	c.(202-204)CGG>CGT	p.R68R	PRF1_uc001jrf.3_Silent_p.R68R	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	68	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TGCCGTCGGGCCGCAGGAACC	0.677			NA	M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				12	9					1.08611e-07	1.32871e-07	0.000978	1	0
ADAMTS14	140766	broad.mit.edu	37	10	72493775	72493775	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:72493775G>T	uc001jrh.2	+	8	1343	c.1343G>T	c.(1342-1344)CGC>CTC	p.R448L	ADAMTS14_uc001jrg.2_Missense_Mutation_p.R451L|ADAMTS14_uc001jri.1_5'UTR	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	448	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						GAGCTCAGCCGCTACCTCCCG	0.637			NA											13	15					2.68362e-12	3.85229e-12	0.001368	1	0
SYNPO2L	79933	broad.mit.edu	37	10	75407866	75407866	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:75407866G>T	uc001jut.3	-	4	1696	c.1544C>A	c.(1543-1545)CCC>CAC	p.P515H	SYNPO2L_uc001jus.3_Missense_Mutation_p.P291H	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	515	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					CAGAGGGGTGGGCCCCTGCGA	0.677			NA											5	4					1.23904e-05	1.41378e-05	0.000602	1	0
LRIT2	340745	broad.mit.edu	37	10	85984321	85984321	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:85984321G>A	uc001kcy.2	-	2	668	c.660C>T	c.(658-660)CTC>CTT	p.L220L	LRIT2_uc010qmc.1_Silent_p.L220L	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	220	LRRCT.					integral to membrane				ovary(2)	2						GGATGACTGGGAGGGTAATGG	0.537			NA											17	31					0	0	0.006122	0	0
LRIT1	26103	broad.mit.edu	37	10	85992169	85992169	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:85992169G>T	uc001kcz.1	-	4	1408	c.1386C>A	c.(1384-1386)CTC>CTA	p.L462L		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	462	Fibronectin type-III.|Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						AGACCGCGTAGAGGACACTGA	0.577			NA											4	16					0.00024832	0.000270549	0.009096	1	0
PLCE1	51196	broad.mit.edu	37	10	96030305	96030305	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:96030305G>A	uc001kjk.2	+	18	5086	c.4452G>A	c.(4450-4452)TCG>TCA	p.S1484S	PLCE1_uc010qnx.1_Silent_p.S1468S|PLCE1_uc001kjm.2_Silent_p.S1176S	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1484	PI-PLC X-box.		S -> L (in NPHS3; gives rise to focal segmental glomerulosclerosis rather than diffuse mesangial sclerosis).		activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TCATCATATCGATTGAGAACC	0.438			NA											11	32					0	0	0.008291	0	0
HELLS	3070	broad.mit.edu	37	10	96306165	96306165	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:96306165G>T	uc001kjt.2	+	2	168	c.63G>T	c.(61-63)CTG>CTT	p.L21L	HELLS_uc001kjs.2_Silent_p.L5L|HELLS_uc009xul.2_Silent_p.L21L|HELLS_uc009xum.2_Silent_p.L21L|HELLS_uc009xun.2_5'UTR|HELLS_uc009xuo.2_Silent_p.L21L|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_5'UTR|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	21					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		TTGAACAACTGGACACTGCTG	0.463			NA											29	18					1.55811e-20	2.73582e-20	0.008361	1	0
HELLS	3070	broad.mit.edu	37	10	96350194	96350194	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:96350194A>G	uc001kjt.2	+	14	1618	c.1513A>G	c.(1513-1515)ACT>GCT	p.T505A	HELLS_uc001kjs.2_Missense_Mutation_p.T489A|HELLS_uc009xul.2_Missense_Mutation_p.T407A|HELLS_uc009xum.2_Missense_Mutation_p.T375A|HELLS_uc009xun.2_Missense_Mutation_p.T381A|HELLS_uc009xuo.2_Missense_Mutation_p.T551A|HELLS_uc001kju.2_Missense_Mutation_p.T144A|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Missense_Mutation_p.T367A|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	505					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		GTTAAGTCCTACTGGTCGACC	0.318			NA											23	14					0	0	0.00278	0	0
C10orf12	26148	broad.mit.edu	37	10	98743139	98743139	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:98743139G>C	uc001kmv.2	+	1	2099	c.1992G>C	c.(1990-1992)CAG>CAC	p.Q664H		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	664										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		ACCCAGAACAGGCAAAAGAAG	0.458			NA											24	20					0	0	0.002299	0	0
SFRP5	6425	broad.mit.edu	37	10	99531108	99531108	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:99531108G>A	uc001kor.3	-	1	649	c.483C>T	c.(481-483)CTC>CTT	p.L161L		NM_003015	NP_003006	Q5T4F7	SFRP5_HUMAN	secreted frizzled-related protein 5 precursor	161	FZ.				apoptosis|brain development|cell differentiation|embryo development|establishment or maintenance of cell polarity|gonad development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of cell proliferation|negative regulation of protein kinase B signaling cascade|negative regulation of sequence-specific DNA binding transcription factor activity|vasculature development|visual perception	cytoplasm|extracellular space|plasma membrane	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1		Colorectal(252;0.234)		Epithelial(162;4.98e-10)|all cancers(201;3.58e-08)		CGGCGATGCAGAGGTCGTTGT	0.741			NA											7	6					0	0	0.001984	0	0
CNNM1	26507	broad.mit.edu	37	10	101147614	101147614	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:101147614G>C	uc001kpp.3	+	8	2667	c.2378G>C	c.(2377-2379)TGC>TCC	p.C793S	CNNM1_uc010qpi.1_Missense_Mutation_p.C814S|CNNM1_uc009xwf.2_Missense_Mutation_p.C793S|CNNM1_uc009xwg.2_Missense_Mutation_p.C193S	NM_020348	NP_065081	Q9NRU3	CNNM1_HUMAN	cyclin M1	793					ion transport	integral to membrane|plasma membrane					0		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		CTCACTGCCTGCCACATGGAC	0.617			NA											7	16					0	0	0.00308	0	0
PAX2	5076	broad.mit.edu	37	10	102566266	102566266	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:102566266C>G	uc001krk.3	+	7	1315	c.765C>G	c.(763-765)ACC>ACG	p.T255T	PAX2_uc001krl.3_Silent_p.T232T|PAX2_uc001krm.3_Silent_p.T255T|PAX2_uc001kro.3_Silent_p.T232T|PAX2_uc001krn.3_Silent_p.T232T|PAX2_uc010qps.1_Silent_p.T231T|PAX2_uc001krp.1_Silent_p.T228T	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	255					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		GAGCTGACACCTTCACCCAGC	0.542			NA											42	85					0	0	0.009718	0	0
PDCD11	22984	broad.mit.edu	37	10	105158271	105158271	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:105158271G>T	uc001kwy.1	+	2	175	c.88G>T	c.(88-90)GAC>TAC	p.D30Y	USMG5_uc001kww.1_5'Flank|USMG5_uc001kwx.1_5'Flank	NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	30					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		AGTTGAACAAGACAACTTATT	0.413			NA											7	14					2.0095e-06	2.3649e-06	0.001984	1	0
CALHM2	51063	broad.mit.edu	37	10	105209359	105209359	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:105209359G>T	uc001kwz.2	-	2	726	c.340C>A	c.(340-342)CCT>ACT	p.P114T	CALHM2_uc001kxa.2_Missense_Mutation_p.P114T|CALHM2_uc001kxc.2_Missense_Mutation_p.P114T|CALHM2_uc001kxb.2_Missense_Mutation_p.P114T|CALHM2_uc001kxd.1_Missense_Mutation_p.P114T	NM_015916	NP_057000	Q9HA72	CAHM2_HUMAN	calcium homeostasis modulator 2	114	Helical; (Potential).					integral to membrane				skin(1)	1						CAGGTGACAGGGGCCACAGCC	0.627			NA											31	26					1.80694e-10	2.42973e-10	0.009535	1	0
CALHM1	255022	broad.mit.edu	37	10	105218463	105218463	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:105218463G>T	uc001kxe.2	-	1	186	c.46C>A	c.(46-48)CAG>AAG	p.Q16K		NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	16						endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						AAGGACTCCTGGTTGGACTGC	0.602			NA											6	13					3.59834e-05	4.03785e-05	0.001168	1	0
COL17A1	1308	broad.mit.edu	37	10	105830296	105830296	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:105830296G>T	uc001kxr.2	-	9	664	c.495C>A	c.(493-495)CTC>CTA	p.L165L	COL17A1_uc010qqv.1_Silent_p.L149L|COL17A1_uc009xxp.1_Silent_p.L165L	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	165	Cytoplasmic (Potential).|Nonhelical region (NC16).|Necessary for interaction with DST and for the recruitment of DST to hemidesmosome.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GACTCCCCTTGAGCAAACGCT	0.517			NA											20	51					1.56452e-12	2.25723e-12	0.007413	1	0
SORCS3	22986	broad.mit.edu	37	10	106802854	106802854	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:106802854G>T	uc001kyi.1	+	5	1223	c.996G>T	c.(994-996)ATG>ATT	p.M332I		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	332	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GGCAACTCATGCATGAACGCA	0.433	NSCLC(116;1497 1690 7108 13108 14106)		NA											32	33					9.93527e-08	1.22386e-07	0.002836	1	0
SORCS3	22986	broad.mit.edu	37	10	107022154	107022154	+	Nonsense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:107022154C>G	uc001kyi.1	+	26	3736	c.3509C>G	c.(3508-3510)TCA>TGA	p.S1170*		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1170	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ATGATTGGGTCAGTGAGCCAA	0.488	NSCLC(116;1497 1690 7108 13108 14106)		NA											15	13					0	0	0.003163	0	0
SORCS1	114815	broad.mit.edu	37	10	108466362	108466362	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:108466362C>A	uc001kym.2	-	8	1182	c.1174G>T	c.(1174-1176)GTG>TTG	p.V392L	SORCS1_uc001kyl.2_Missense_Mutation_p.V392L|SORCS1_uc009xxs.2_Missense_Mutation_p.V392L|SORCS1_uc001kyn.1_Missense_Mutation_p.V392L|SORCS1_uc001kyo.2_Missense_Mutation_p.V392L	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	392	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CGGTAGGACACGTAGTAATGT	0.463			NA											8	28					0.00829132	0.00865604	0.008291	1	0
SORCS1	114815	broad.mit.edu	37	10	108923745	108923745	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:108923745C>A	uc001kym.2	-	1	548	c.540G>T	c.(538-540)TGG>TGT	p.W180C	SORCS1_uc001kyl.2_Missense_Mutation_p.W180C|SORCS1_uc009xxs.2_Missense_Mutation_p.W180C|SORCS1_uc001kyn.1_Missense_Mutation_p.W180C|SORCS1_uc001kyo.2_Missense_Mutation_p.W180C	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	180	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TGTGGCCAGACCAGTGGACCA	0.562			NA											8	19					0.000442599	0.000474237	0.006214	1	0
NRAP	4892	broad.mit.edu	37	10	115366008	115366008	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:115366008G>A	uc001laj.2	-	33	3900	c.3736C>T	c.(3736-3738)CAC>TAC	p.H1246Y	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.H1211Y|NRAP_uc001lal.3_Missense_Mutation_p.H1246Y	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1246	Nebulin 32.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		GTATACTCGTGTCTTGCATCC	0.443			NA											19	16					0	0	0.008871	0	0
ATRNL1	26033	broad.mit.edu	37	10	117185799	117185799	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:117185799A>G	uc001lcg.2	+	21	3695	c.3309A>G	c.(3307-3309)AGA>AGG	p.R1103R	ATRNL1_uc010qsm.1_Silent_p.R232R|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1103	Laminin EGF-like 2.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ATCCACTTAGAGGAACATGTT	0.284			NA											20	35					0	0	0.002299	0	0
ATRNL1	26033	broad.mit.edu	37	10	117278785	117278785	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:117278785C>A	uc001lcg.2	+	25	4053	c.3667C>A	c.(3667-3669)CAA>AAA	p.Q1223K	ATRNL1_uc010qsm.1_Missense_Mutation_p.Q352K|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1223	Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TGCATTCTCACAACACAATAC	0.313			NA											13	21					9.05144e-12	1.27997e-11	0.001855	1	0
ATRNL1	26033	broad.mit.edu	37	10	117486824	117486824	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:117486824G>A	uc001lcg.2	+	27	4248	c.3862G>A	c.(3862-3864)GTG>ATG	p.V1288M	ATRNL1_uc010qsm.1_Missense_Mutation_p.V417M|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1288	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AGCTCTGGAAGTGGGAGCTGA	0.458			NA											4	14					0	0	0.000602	0	0
GFRA1	2674	broad.mit.edu	37	10	117884934	117884934	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:117884934G>A	uc001lcj.2	-	6	1266	c.568C>T	c.(568-570)CGC>TGC	p.R190C	GFRA1_uc001lci.2_Missense_Mutation_p.R185C|GFRA1_uc009xyr.2_Missense_Mutation_p.R185C	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	190	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		TGGCACTTGCGGCGGTTGCAG	0.602	Ovarian(128;329 1725 45498 46808 50759)		NA											4	16					0	0	0.009096	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118354355	118354355	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:118354355C>A	uc001lco.1	+	5	462	c.444C>A	c.(442-444)GCC>GCA	p.A148A	PNLIPRP1_uc001lcp.2_Silent_p.A148A|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	148					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		CCCAGGTGGCCCAGATGCTCG	0.592			NA											12	26					3.07112e-06	3.59348e-06	0.000978	1	0
PNLIPRP2	5408	broad.mit.edu	37	10	118385498	118385498	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:118385498C>A	uc001lcq.2	+	6	272	c.249C>A	c.(247-249)AAC>AAA	p.N83K	PNLIPRP2_uc009xyu.1_RNA|PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	82					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		AGGCTTCAAACTTCCAACTGG	0.478			NA											7	23					8.12818e-05	8.99342e-05	0.001984	1	0
PPAPDC1A	196051	broad.mit.edu	37	10	122280544	122280544	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:122280544T>A	uc001lev.1	+	5	734	c.382T>A	c.(382-384)TGC>AGC	p.C128S	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.C128S|PPAPDC1A_uc009xzl.1_Intron|PPAPDC1A_uc001lew.1_Intron|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_Missense_Mutation_p.C7S	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	128					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		GGAAATGCATTGCACAGGTGA	0.493			NA											19	20					0	0	0.008871	0	0
BTBD16	118663	broad.mit.edu	37	10	124097569	124097569	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:124097569T>G	uc001lgc.1	+	16	1741	c.1490T>G	c.(1489-1491)GTA>GGA	p.V497G	BTBD16_uc001lgd.1_Missense_Mutation_p.V496G	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	497										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCAATCTATGTAAGTTTTGCA	0.373			NA											13	16					0	0	0.001368	0	0
C10orf120	399814	broad.mit.edu	37	10	124459225	124459225	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:124459225C>A	uc001lgn.2	-	1	114	c.82G>T	c.(82-84)GAA>TAA	p.E28*		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	28										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				ACTGGCTTTTCATTCTTCCTT	0.443			NA											17	20					4.7546e-09	6.0996e-09	0.004007	1	0
VENTX	27287	broad.mit.edu	37	10	135053621	135053621	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:135053621G>T	uc010quy.1	+	3	599	c.588G>T	c.(586-588)ATG>ATT	p.M196I		NM_014468	NP_055283	O95231	VENTX_HUMAN	VENT homeobox	196					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(35;4.15e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)|all cancers(32;1.19e-05)		AGGCTCTGATGCTGCCCCCTG	0.672			NA											10	3					0.000442599	0.000474237	0.006214	1	0
MUC5B	727897	broad.mit.edu	37	11	1256679	1256679	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:1256679T>A	uc009ycr.1	+	39	5019	c.4893T>A	c.(4891-4893)CCT>CCA	p.P1631P	MUC5B_uc009yct.1_Intron|MUC5B_uc001ltb.2_Intron|MUC5B_uc001lta.2_Intron	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCCCCGACCCTGCAGCCAACG	0.587			NA											6	0					0	0	0.001168	0	0
RRM1	6240	broad.mit.edu	37	11	4156359	4156359	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:4156359G>T	uc001lyw.3	+	18	2368	c.2049G>T	c.(2047-2049)GTG>GTT	p.V683V	RRM1_uc009yej.2_RNA|RRM1_uc009yei.2_Silent_p.V643V|RRM1_uc010qyc.1_Silent_p.V586V|RRM1_uc010qyd.1_Silent_p.V345V	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	683					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	ATAAAACTGTGTGGGAAATCT	0.393	NSCLC(45;1345 1376 6258 22925)|Ovarian(34;894 1053 6175 12768)		NA											20	29					5.26018e-13	7.69835e-13	0.001882	1	0
OR51E2	81285	broad.mit.edu	37	11	4703108	4703108	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:4703108G>T	uc001lzk.2	-	2	1078	c.834C>A	c.(832-834)ATC>ATA	p.I278I		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		GCAGCAGGTAGATGTCACCCA	0.502			NA											21	40					5.26018e-13	7.69835e-13	0.001882	1	0
OR51G1	79324	broad.mit.edu	37	11	4944805	4944805	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:4944805G>T	uc010qyr.1	-	1	765	c.765C>A	c.(763-765)ATC>ATA	p.I255I		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAATCATGGGGATGTAGAAGA	0.532			NA											25	62					7.87624e-14	1.17689e-13	0.00278	1	0
OR52A4	390053	broad.mit.edu	37	11	5142772	5142772	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:5142772G>T	uc001lzz.1	-	1	37	c.37C>A	c.(37-39)CCT>ACT	p.P13T	OR52A4_uc001maa.2_RNA	NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		AGCACAAAAGGCATGAACAAG	0.418			NA											37	55					5.43694e-19	9.28321e-19	0.005524	1	0
OR51Q1	390061	broad.mit.edu	37	11	5444288	5444288	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:5444288C>T	uc010qzd.1	+	1	858	c.858C>T	c.(856-858)CCC>CCT	p.P286P	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCTGGCACCCCCGGTGATGA	0.448			NA											23	52					0	0	0.00278	0	0
DNHD1	144132	broad.mit.edu	37	11	6541202	6541202	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:6541202G>A	uc001mdw.3	+	9	2219	c.1655G>A	c.(1654-1656)AGG>AAG	p.R552K	DNHD1_uc001mdp.2_Missense_Mutation_p.R552K|DNHD1_uc001mdq.2_Missense_Mutation_p.R241K	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	552					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CAGGCCCCAAGGCAGAAACCC	0.498			NA											37	88					0	0	0.006999	0	0
DCHS1	8642	broad.mit.edu	37	11	6654134	6654134	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:6654134C>G	uc001mem.1	-	6	3019	c.2609G>C	c.(2608-2610)GGA>GCA	p.G870A		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	870	Cadherin 8.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGGCACTCCACTGCCTGC	0.577			NA											8	24					0	0	0.004482	0	0
DCHS1	8642	broad.mit.edu	37	11	6654222	6654222	+	Missense_Mutation	SNP	C	C	T	rs146159630		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:6654222C>T	uc001mem.1	-	6	2931	c.2521G>A	c.(2521-2523)GCG>ACG	p.A841T		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	841	Cadherin 8.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTGATACCGCATCTAGGGAG	0.587			NA											26	36					0	0	0.00333	0	0
OR10A5	144124	broad.mit.edu	37	11	6867387	6867387	+	Silent	SNP	T	T	A	rs142555747		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:6867387T>A	uc001met.1	+	1	474	c.474T>A	c.(472-474)ACT>ACA	p.T158T		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.T158T(1)		skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CTGTAGCTACTGTGCAGACCA	0.547	Pancreas(44;21 1072 25662 28041 45559)		NA											39	64					0	0	0.00874	0	0
MICAL2	9645	broad.mit.edu	37	11	12278459	12278459	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:12278459G>T	uc001mjz.2	+	24	3371	c.3083G>T	c.(3082-3084)CGC>CTC	p.R1028L	MICAL2_uc010rch.1_Missense_Mutation_p.R838L|MICAL2_uc001mka.2_Missense_Mutation_p.R1028L|MICAL2_uc010rci.1_Missense_Mutation_p.R1007L|MICAL2_uc001mkb.2_Missense_Mutation_p.R802L|MICAL2_uc001mkc.2_Missense_Mutation_p.R781L|MICAL2_uc001mkd.2_Missense_Mutation_p.R610L|MICAL2_uc010rcj.1_Missense_Mutation_p.R240L|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	1028	LIM zinc-binding.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GAGTGTTTCCGCTGCAGCATC	0.612			NA											30	26					2.08457e-15	3.2371e-15	0.002096	1	0
ABCC8	6833	broad.mit.edu	37	11	17438477	17438477	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:17438477C>T	uc001mnc.2	-	17	2381	c.2255G>A	c.(2254-2256)AGC>AAC	p.S752N		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	752	ABC transporter 1.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AAGGCTGTACCTGGGGTCCTC	0.562			NA											8	18					0	0	0.008291	0	0
ANO5	203859	broad.mit.edu	37	11	22271871	22271871	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:22271871G>T	uc001mqi.2	+	10	1284	c.967G>T	c.(967-969)GCT>TCT	p.A323S	ANO5_uc001mqj.2_Missense_Mutation_p.A322S	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	323	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						AGTTGGCTTAGCTTGTTTTAT	0.338			NA											20	14					2.39187e-15	3.70623e-15	0.008871	1	0
ANO5	203859	broad.mit.edu	37	11	22294524	22294524	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:22294524G>A	uc001mqi.2	+	19	2541	c.2224G>A	c.(2224-2226)GTT>ATT	p.V742I	ANO5_uc001mqj.2_Missense_Mutation_p.V741I	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	742	Helical; (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TGTCCTTTCTGTTGCAACTAA	0.413			NA											24	51					0	0	0.005443	0	0
FIBIN	387758	broad.mit.edu	37	11	27016337	27016337	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:27016337C>A	uc001mrd.2	+	1	710	c.264C>A	c.(262-264)GGC>GGA	p.G88G		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	88						extracellular region|Golgi apparatus					0						CCGTGCTGGGCCGCCAGGTGG	0.657			NA											14	17					4.7546e-09	6.0996e-09	0.004007	1	0
CCDC73	493860	broad.mit.edu	37	11	32636042	32636042	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:32636042G>T	uc001mtv.2	-	16	1866	c.1822C>A	c.(1822-1824)CCA>ACA	p.P608T		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	608										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					CGAGTCCCTGGAAGCAATCTG	0.333			NA											18	17					1.99824e-07	2.41963e-07	0.00499	1	0
HIPK3	10114	broad.mit.edu	37	11	33358645	33358645	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:33358645G>T	uc001mul.1	+	4	1516	c.1246G>T	c.(1246-1248)GGT>TGT	p.G416C	HIPK3_uc001mum.1_Missense_Mutation_p.G416C|HIPK3_uc009yjv.1_Missense_Mutation_p.G416C|HIPK3_uc009yjw.1_RNA	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	416	Protein kinase.				anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						TCAGACTCAAGGTTTGCCAGG	0.254			NA											9	18					1.58986e-06	1.87881e-06	0.008291	1	0
C11orf41	25758	broad.mit.edu	37	11	33596419	33596419	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:33596419C>A	uc001mup.3	+	9	3653	c.3529C>A	c.(3529-3531)CCC>ACC	p.P1177T	C11orf41_uc001mun.1_Missense_Mutation_p.P1177T	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1171						integral to membrane				ovary(2)	2						GCAAGCTGACCGTAAGGGAAT	0.433			NA											42	43					2.26627e-22	4.10582e-22	0.007835	1	0
CD44	960	broad.mit.edu	37	11	35227679	35227679	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:35227679C>A	uc001mvu.2	+	11	1737	c.1303C>A	c.(1303-1305)CAT>AAT	p.H435N	CD44_uc001mvv.2_Missense_Mutation_p.H392N|CD44_uc001mvw.2_Intron|CD44_uc001mvx.2_Intron|CD44_uc001mvy.2_Intron|CD44_uc001mwc.3_Intron|CD44_uc010rer.1_Intron|CD44_uc009ykh.2_Intron|CD44_uc010res.1_5'UTR|CD44_uc010ret.1_Intron|CD44_uc010reu.1_Intron	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	435	Extracellular (Potential).|Stem.				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	TCATACCAGCCATCCAATGCA	0.473			NA											17	27					1.5739e-10	2.13247e-10	0.004007	1	0
RAG1	5896	broad.mit.edu	37	11	36594998	36594998	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:36594998A>T	uc001mwu.3	+	2	268	c.144A>T	c.(142-144)GAA>GAT	p.E48D	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	48	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				CTCAAAAGGAAAAGAAGGATT	0.443	Pancreas(43;321 1249 3212 48200)|Esophageal Squamous(38;49 1003 17530 24363)		NA							Familial_Hemophagocytic_Lymphohistiocytosis				21	57					0	0	0.010504	0	0
RAG1	5896	broad.mit.edu	37	11	36595593	36595593	+	Missense_Mutation	SNP	C	C	T	rs147203889		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:36595593C>T	uc001mwu.3	+	2	863	c.739C>T	c.(739-741)CGT>TGT	p.R247C	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	247	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				AAGACAAGCCCGTCAGCACAA	0.498	Pancreas(43;321 1249 3212 48200)|Esophageal Squamous(38;49 1003 17530 24363)		NA							Familial_Hemophagocytic_Lymphohistiocytosis				18	39					0	0	0.006122	0	0
SYT13	57586	broad.mit.edu	37	11	45274156	45274156	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:45274156C>A	uc001myq.2	-	4	788	c.662G>T	c.(661-663)TGG>TTG	p.W221L	SYT13_uc009yku.1_Missense_Mutation_p.W77L	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	221	Cytoplasmic (Potential).|C2 1.					transport vesicle				ovary(1)	1						GCCCTCCTCCCAGGTGGTGTG	0.657			NA									OREG0020928	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	32					6.72482e-11	9.22558e-11	0.003163	1	0
F2	2147	broad.mit.edu	37	11	46747442	46747442	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:46747442G>T	uc001ndf.3	+	7	636	c.593G>T	c.(592-594)CGC>CTC	p.R198L	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	198		Cleavage; by thrombin.			activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity	p.R198C(1)		ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	ATGACTCCACGCTCCGAAGGC	0.463	Esophageal Squamous(147;1147 1808 2148 38609 51144)		NA											34	39					1.36239e-07	1.65533e-07	0.003271	1	0
LRP4	4038	broad.mit.edu	37	11	46897219	46897219	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:46897219G>A	uc001ndn.3	-	27	3859	c.3713C>T	c.(3712-3714)GCT>GTT	p.A1238V		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1238	Extracellular (Potential).|LDL-receptor class B 14.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		ATTCAGGTCAGCAGCCTCAAT	0.567			NA											15	25					0	0	0.00245	0	0
OR4S1	256148	broad.mit.edu	37	11	48328183	48328183	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:48328183C>T	uc010rhu.1	+	1	409	c.409C>T	c.(409-411)CGG>TGG	p.R137W		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CATGGATTGCCGGAAGTGTGG	0.577			NA											37	33					0	0	0.005524	0	0
OR4A5	81318	broad.mit.edu	37	11	51411794	51411794	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:51411794C>A	uc001nhi.1	-	1	602	c.602G>T	c.(601-603)GGA>GTA	p.G201V		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ACAGATTGCTCCACTATTGAC	0.428			NA											11	22					3.86212e-05	4.31346e-05	0.008291	1	0
OR4C15	81309	broad.mit.edu	37	11	55321938	55321938	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55321938G>T	uc010rig.1	+	1	156	c.156G>T	c.(154-156)TTG>TTT	p.L52F		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	Error:Variant_position_missing_in_Q8NGM1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTTTTCCTTGGGAAACATGC	0.358			NA								HNSCC(20;0.049)			41	86					7.63091e-17	1.23342e-16	0.007835	1	0
OR4C6	219432	broad.mit.edu	37	11	55432871	55432871	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55432871C>A	uc001nht.3	+	3	494	c.229C>A	c.(229-231)CCC>ACC	p.P77T	OR4C6_uc010rik.1_Missense_Mutation_p.P77T	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGTCGTTGCCCCCAAGGTGAT	0.463			NA											32	69					3.90053e-15	5.99822e-15	0.002445	1	0
OR4C6	219432	broad.mit.edu	37	11	55433099	55433099	+	Missense_Mutation	SNP	C	C	A	rs149652704		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55433099C>A	uc001nht.3	+	3	722	c.457C>A	c.(457-459)CAC>AAC	p.H153N	OR4C6_uc010rik.1_Missense_Mutation_p.H153N	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GGGATTTATGCACGCAATGAT	0.468			NA											34	42					1.99505e-19	3.43941e-19	0.002445	1	0
OR5D14	219436	broad.mit.edu	37	11	55563060	55563061	+	Missense_Mutation	DNP	TG	TG	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55563060_55563061TG>AT	uc010rim.1	+	1	29_30	c.29_30TG>AT	c.(28-30)ATG>AAT	p.M10N		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				AATCTGAGCATGGAGCCCACCT	0.401			NA											43	47					0	0	0.004672	0	0
OR5D14	219436	broad.mit.edu	37	11	55563196	55563196	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55563196C>T	uc010rim.1	+	1	165	c.165C>T	c.(163-165)CCC>CCT	p.P55P		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				AGATTAACCCCAAATTTCACA	0.388			NA											20	58					0	0	0.008871	0	0
OR5L2	26338	broad.mit.edu	37	11	55594843	55594843	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55594843A>G	uc001nhy.1	+	1	149	c.149A>G	c.(148-150)CAG>CGG	p.Q50R		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				GCACTGATTCAGGTCAGCTCT	0.488			NA								HNSCC(27;0.073)			68	132					0	0	0.00361	0	0
OR7E5P	219445	broad.mit.edu	37	11	55747343	55747343	+	Silent	SNP	G	G	T	rs149960901	by1000genomes	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55747343G>T	uc010riu.1	-	4	669	c.114C>A	c.(112-114)ATC>ATA	p.I38I		NR_027688				SubName: Full=HCG2036849; SubName: Full=Seven transmembrane helix receptor;												0						AGGTGAAACCGATGTCAGGCA	0.552			NA											8	18					0.00448238	0.00472109	0.004482	1	0
OR7E5P	219445	broad.mit.edu	37	11	55747406	55747406	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:55747406G>T	uc010riu.1	-	4	606	c.51C>A	c.(49-51)GGC>GGA	p.G17G		NR_027688				SubName: Full=HCG2036849; SubName: Full=Seven transmembrane helix receptor;												0						GGGAGTCAGAGCCGATGGCCA	0.582			NA											22	21					1.9806e-07	2.40441e-07	0.002299	1	0
OR5T3	390154	broad.mit.edu	37	11	56020379	56020379	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:56020379C>A	uc010rjd.1	+	1	704	c.704C>A	c.(703-705)TCT>TAT	p.S235Y		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	235	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TTTGTGGGTTCTATTGAGATA	0.408			NA											56	123					3.21867e-24	5.98577e-24	0.00361	1	0
OR5T3	390154	broad.mit.edu	37	11	56020487	56020487	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:56020487G>C	uc010rjd.1	+	1	812	c.812G>C	c.(811-813)TGT>TCT	p.C271S		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	271	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TTCTCTACATGTGGCTCTCAC	0.418			NA											68	50					0	0	0.00361	0	0
OR5M9	390162	broad.mit.edu	37	11	56230127	56230128	+	Nonsense_Mutation	DNP	CA	CA	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:56230127_56230128CA>AT	uc010rjj.1	-	1	750_751	c.750_751TG>AT	c.(748-753)TATGGG>TAATGG	p.250_251YG>*W		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	250_251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATGGGGGTCCCATAAAACATAG	0.51			NA											20	15					0	0	0.004672	0	0
OR5M9	390162	broad.mit.edu	37	11	56230340	56230340	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:56230340G>T	uc010rjj.1	-	1	538	c.538C>A	c.(538-540)CCC>ACC	p.P180T		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATGAGAGGGGGATCTGCACAA	0.408			NA											20	12					1.00905e-13	1.49675e-13	0.008871	1	0
OR9G9	504191	broad.mit.edu	37	11	56468109	56468109	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:56468109G>A	uc010rjn.1	+	1	246	c.246G>A	c.(244-246)GTG>GTA	p.V82V		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	82	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGATCCTAGTGACCTGCATCT	0.488			NA											20	111					0	0	0.00333	0	0
SLC43A1	8501	broad.mit.edu	37	11	57259335	57259335	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:57259335C>T	uc001nkk.2	-	9	990	c.872G>A	c.(871-873)AGG>AAG	p.R291K	SLC43A1_uc001nkl.2_Missense_Mutation_p.R291K	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	291					cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						GGGGACAGACCCTGGGGAGAC	0.602			NA									OREG0020651	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	17					0	0	0.006122	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958752	57958752	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:57958752A>T	uc010rka.1	+	1	790	c.790A>T	c.(790-792)ACA>TCA	p.T264S		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				GCGAGACAACACAGGCCAGTC	0.577			NA											32	60					0	0	0.002445	0	0
OR1S1	219959	broad.mit.edu	37	11	57983153	57983153	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:57983153G>C	uc010rkc.1	+	1	937	c.937G>C	c.(937-939)GCC>CCC	p.A313P		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	313	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TATGAAAGGTGCCCTGAGAAA	0.428			NA											65	66					0	0	0.00361	0	0
OR10W1	81341	broad.mit.edu	37	11	58034886	58034886	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:58034886G>C	uc001nmq.1	-	1	847	c.445C>G	c.(445-447)CAA>GAA	p.Q149E		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GCCACCAGTTGTAAGGACAGG	0.507			NA											11	20					0	0	0.008291	0	0
ZFP91	80829	broad.mit.edu	37	11	58384721	58384721	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:58384721A>G	uc001nmx.3	+	11	1423	c.1255A>G	c.(1255-1257)ATG>GTG	p.M419V	ZFP91_uc001nmy.3_Missense_Mutation_p.M418V|ZFP91-CNTF_uc010rkm.1_RNA	NM_053023	NP_444251	Q96JP5	ZFP91_HUMAN	zinc finger protein 91	419	C2H2-type 4.				activation of NF-kappaB-inducing kinase activity|protein K63-linked ubiquitination	nucleus	nucleic acid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				TAATTGGCACATGAAGAAACA	0.403			NA											24	31					0	0	0.00333	0	0
OR4D9	390199	broad.mit.edu	37	11	59283051	59283051	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:59283051G>C	uc010rkv.1	+	1	666	c.666G>C	c.(664-666)TTG>TTC	p.L222F		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGGTCATCTTGATGATGCTGA	0.498			NA											82	68					0	0	0.00361	0	0
OR10V1	390201	broad.mit.edu	37	11	59480878	59480878	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:59480878T>A	uc001nof.1	-	1	441	c.441A>T	c.(439-441)GTA>GTT	p.V147V		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCAAGGAGCCTACCAGCAGCT	0.502			NA											20	20					0	0	0.008871	0	0
GIF	2694	broad.mit.edu	37	11	59611418	59611418	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:59611418C>A	uc001noi.2	-	2	238	c.190G>T	c.(190-192)GCC>TCC	p.A64S	GIF_uc010rkz.1_Missense_Mutation_p.A64S	NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	64					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						TAGGCTCCGGCCAGATTCATG	0.537	NSCLC(53;1139 1245 16872 38474 42853)		NA											17	30					5.01169e-05	5.58424e-05	0.00499	1	0
MS4A3	932	broad.mit.edu	37	11	59834453	59834453	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:59834453C>T	uc001nom.2	+	5	509	c.381C>T	c.(379-381)GCC>GCT	p.A127A	MS4A3_uc001non.2_Silent_p.A81A|MS4A3_uc001noo.2_Silent_p.A4A	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	127	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				TGAACATTGCCAGTGCTACAA	0.353			NA											7	9					0	0	0.001984	0	0
MS4A7	58475	broad.mit.edu	37	11	60157001	60157001	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:60157001C>A	uc001npe.2	+	5	623	c.478C>A	c.(478-480)CCT>ACT	p.P160T	MS4A7_uc001npf.2_Missense_Mutation_p.P160T|MS4A7_uc001npg.2_Missense_Mutation_p.P115T|MS4A7_uc001nph.2_Missense_Mutation_p.P115T|MS4A14_uc001npi.2_Intron|MS4A7_uc009ymx.1_Missense_Mutation_p.P115T	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	160	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|central_nervous_system(1)	2						ATCCTCATTGCCTTATTCGGA	0.438			NA											12	43					2.61681e-11	3.65328e-11	0.00245	1	0
CD6	923	broad.mit.edu	37	11	60777114	60777114	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:60777114G>A	uc001nqq.2	+	5	1075	c.852G>A	c.(850-852)GGG>GGA	p.G284G	CD6_uc009yni.2_Intron|CD6_uc009ynj.2_Intron|CD6_uc001nqp.2_Silent_p.G284G|CD6_uc001nqr.2_Silent_p.G284G|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Silent_p.G284G	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	284	SRCR 3.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						ACTTCCGAGGGGTCTGGAACA	0.652	Pancreas(169;904 2017 4767 38890 42505)		NA											9	31					0	0	0.006214	0	0
RAB3IL1	5866	broad.mit.edu	37	11	61675767	61675767	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:61675767G>C	uc001nso.2	-	2	181	c.23C>G	c.(22-24)CCA>CGA	p.P8R	RAB3IL1_uc001nsp.2_Missense_Mutation_p.P55R	NM_013401	NP_037533	Q8TBN0	R3GEF_HUMAN	RAB3A interacting protein (rabin3)-like 1	8							protein binding			skin(2)|central_nervous_system(1)	3						GCCCTGGTCTGGCTGGGGTGG	0.682			NA											4	7					0	0	0.000602	0	0
ASRGL1	80150	broad.mit.edu	37	11	62156712	62156712	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:62156712C>T	uc001nte.3	+	5	883	c.599C>T	c.(598-600)TCA>TTA	p.S200L	ASRGL1_uc001ntf.3_Missense_Mutation_p.S200L|ASRGL1_uc001ntg.3_Missense_Mutation_p.S72L	NM_025080	NP_079356	Q7L266	ASGL1_HUMAN	asparaginase-like 1	200					asparagine catabolic process via L-aspartate|protein maturation	cytoplasm|microtubule cytoskeleton|nucleus	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0					L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)	GTTGGGGACTCACCGTGTCTA	0.582			NA											22	20					0	0	0.002299	0	0
SLC22A25	387601	broad.mit.edu	37	11	62931309	62931309	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:62931309C>A	uc001nwr.1	-	9	1631	c.1631G>T	c.(1630-1632)AGC>ATC	p.S544I	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	544	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TAGCACAGAGCTCCTCTGAGG	0.507			NA											40	81					3.43241e-23	6.28247e-23	0.009718	1	0
PLCB3	5331	broad.mit.edu	37	11	64032518	64032518	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:64032518C>T	uc001nzb.2	+	23	2748	c.2748C>T	c.(2746-2748)TCC>TCT	p.S916S	PLCB3_uc009ypg.1_Silent_p.S916S|PLCB3_uc009yph.1_Silent_p.S849S|PLCB3_uc009ypi.2_Silent_p.S916S	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	916					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						TGGATGCCTCCCCCCGCCGGC	0.701			NA											7	4					0	0	0.001984	0	0
NRXN2	9379	broad.mit.edu	37	11	64390478	64390478	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:64390478T>A	uc001oap.2	-	6	1293	c.782A>T	c.(781-783)CAG>CTG	p.Q261L	NRXN2_uc001oar.2_Missense_Mutation_p.Q1307L|NRXN2_uc001oas.2_Missense_Mutation_p.Q1237L|NRXN2_uc001oao.2_5'UTR|NRXN2_uc001oaq.2_Missense_Mutation_p.Q974L	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	261	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CACCTGGCCCTGGAAGGGGCG	0.597			NA											10	4					0	0	0.000978	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64607593	64607593	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:64607593T>A	uc001obs.3	-	5	580	c.580A>T	c.(580-582)AGG>TGG	p.R194W		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	194	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						GGGCCCCACCTGTGGACATAA	0.592			NA											11	9					0	0	0.008291	0	0
SNX15	29907	broad.mit.edu	37	11	64795066	64795066	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:64795066G>T	uc001oci.3	+	4	710	c.57G>T	c.(55-57)AGG>AGT	p.R19S	SNX15_uc009ypy.2_Missense_Mutation_p.R19S|SNX15_uc001ocj.2_Missense_Mutation_p.R19S|SNX15_uc001ock.2_Missense_Mutation_p.R19S	NM_013306	NP_037438	Q9NRS6	SNX15_HUMAN	sorting nexin 15 isoform A	19	PX.				cell communication|intracellular protein transport	cytoplasmic vesicle membrane|cytosol	phosphatidylinositol binding|protein transporter activity			ovary(1)	1						CGGACCCCAGGACTCACCCCA	0.622	Esophageal Squamous(56;269 1304 3324 8253)		NA									OREG0021069	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	52	32					2.14674e-31	4.26949e-31	0.00361	1	0
NPAS4	266743	broad.mit.edu	37	11	66190227	66190227	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:66190227C>A	uc001ohx.1	+	4	689	c.513C>A	c.(511-513)GGC>GGA	p.G171G	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	171					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TTATTCGAGGCCGATTCCATG	0.592			NA											23	37					1.10513e-12	1.60419e-12	0.002299	1	0
NPAS4	266743	broad.mit.edu	37	11	66190315	66190315	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:66190315C>A	uc001ohx.1	+	4	777	c.601C>A	c.(601-603)CCA>ACA	p.P201T	NPAS4_uc010rpc.1_Silent_p.A27A	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	201					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GAGACCCCGCCCAGGTCCTGG	0.622			NA											17	35					3.41278e-10	4.55038e-10	0.00499	1	0
NPAS4	266743	broad.mit.edu	37	11	66192356	66192356	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:66192356G>A	uc001ohx.1	+	7	2171	c.1995G>A	c.(1993-1995)CTG>CTA	p.L665L	NPAS4_uc010rpc.1_Silent_p.L455L	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	665					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TTGGAGGACTGGAGCCCCTGG	0.612			NA											104	88					0	0	0.00361	0	0
PC	5091	broad.mit.edu	37	11	66617321	66617321	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:66617321C>T	uc001ojn.1	-	19	2957	c.2908G>A	c.(2908-2910)GAC>AAC	p.D970N	PC_uc001ojo.1_Missense_Mutation_p.D970N|PC_uc001ojp.1_Missense_Mutation_p.D970N|PC_uc001ojm.1_5'UTR	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	970					gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	CTTGGCAGGTCCTTCAGTACC	0.637			NA											21	35					0	0	0.001882	0	0
ALDH3B2	222	broad.mit.edu	37	11	67431999	67431999	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:67431999C>A	uc001omr.2	-	8	1180	c.741G>T	c.(739-741)GAG>GAT	p.E247D	ALDH3B2_uc001oms.2_Missense_Mutation_p.E247D|ALDH3B2_uc009ysa.1_Missense_Mutation_p.E247D	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	247					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	GCATCACAGGCTCCGTCTCCT	0.657			NA											26	35					4.7796e-09	6.12615e-09	0.004656	1	0
CPT1A	1374	broad.mit.edu	37	11	68529082	68529082	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:68529082C>A	uc001oog.3	-	16	2119	c.1949G>T	c.(1948-1950)GGC>GTC	p.G650V	CPT1A_uc001oof.3_Missense_Mutation_p.G650V|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	650	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GATCCCAGAGCCGGTCATGGC	0.498			NA											153	88					2.39385e-68	5.1571e-68	0.00361	1	0
ARRB1	408	broad.mit.edu	37	11	74983955	74983955	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:74983955C>A	uc001owe.1	-	12	1204	c.982G>T	c.(982-984)GTG>TTG	p.V328L	ARRB1_uc001owf.1_Missense_Mutation_p.V328L	NM_004041	NP_004032	P49407	ARRB1_HUMAN	arrestin beta 1 isoform A	328	Interaction with TRAF6.				G-protein coupled receptor internalization|histone H4 acetylation|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|positive regulation of histone acetylation|positive regulation of Rho protein signal transduction|positive regulation of transcription from RNA polymerase II promoter|post-Golgi vesicle-mediated transport|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|signal transduction|stress fiber assembly|transcription from RNA polymerase II promoter	chromatin|coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane fraction|nucleus|plasma membrane|pseudopodium|soluble fraction	angiotensin receptor binding|enzyme inhibitor activity|GTPase activator activity|insulin-like growth factor receptor binding|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding			breast(2)	2						CGAGACACCACCAGCTTCACT	0.617			NA											29	16					1.06647e-15	1.67622e-15	0.003755	1	0
RAB30	27314	broad.mit.edu	37	11	82693371	82693371	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:82693371C>A	uc001ozu.2	-	6	709	c.448G>T	c.(448-450)GAG>TAG	p.E150*	RAB30_uc009yve.2_Nonsense_Mutation_p.E148*|RAB30_uc010rst.1_Nonsense_Mutation_p.E148*|RAB30_uc001ozv.2_Missense_Mutation_p.W146C	NM_014488	NP_055303	Q15771	RAB30_HUMAN	RAB30, member RAS oncogene family	150					protein transport|small GTPase mediated signal transduction	Golgi stack|plasma membrane	GTP binding|GTPase activity				0						GCTGAGGTCTCCAGATAATAC	0.453			NA											47	33					8.20599e-20	1.42678e-19	0.002852	1	0
RAB30	27314	broad.mit.edu	37	11	82705151	82705151	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:82705151G>A	uc001ozu.2	-	4	368	c.107C>T	c.(106-108)CCA>CTA	p.P36L	RAB30_uc009yve.2_Missense_Mutation_p.P34L|RAB30_uc010rst.1_Missense_Mutation_p.P34L|RAB30_uc001ozv.2_Missense_Mutation_p.P34L|RAB30_uc009yvg.1_Intron	NM_014488	NP_055303	Q15771	RAB30_HUMAN	RAB30, member RAS oncogene family	36					protein transport|small GTPase mediated signal transduction	Golgi stack|plasma membrane	GTP binding|GTPase activity				0						TCCTTGACCTGGGGGGAAAAG	0.383			NA											30	89					0	0	0.002096	0	0
DLG2	1740	broad.mit.edu	37	11	83497829	83497829	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:83497829C>A	uc001paj.2	-	13	1717	c.1414G>T	c.(1414-1416)GGC>TGC	p.G472C	DLG2_uc001pai.2_Missense_Mutation_p.G369C|DLG2_uc010rsy.1_Missense_Mutation_p.G439C|DLG2_uc010rsz.1_Missense_Mutation_p.G472C|DLG2_uc010rta.1_Missense_Mutation_p.G472C|DLG2_uc001pak.2_Missense_Mutation_p.G577C|DLG2_uc010rtb.1_Missense_Mutation_p.G439C|DLG2_uc001pal.1_Missense_Mutation_p.G472C|DLG2_uc001pam.1_Missense_Mutation_p.G511C	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	472	PDZ 3.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				AGGTCAATGCCATTCACCTGA	0.458			NA											33	18					5.8336e-16	9.23006e-16	0.003271	1	0
PICALM	8301	broad.mit.edu	37	11	85725988	85725988	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:85725988T>C	uc001pbm.2	-	5	757	c.471A>G	c.(469-471)AGA>AGG	p.R157R	PICALM_uc001pbl.2_Silent_p.R157R|PICALM_uc001pbn.2_Silent_p.R157R|PICALM_uc010rtl.1_Silent_p.R106R	NM_007166	NP_009097	Q13492	PICAL_HUMAN	phosphatidylinositol-binding clathrin assembly	157					clathrin coat assembly|endosome transport|negative regulation of receptor-mediated endocytosis|positive regulation of transcription, DNA-dependent|receptor internalization|regulation of protein localization	clathrin coat|clathrin-coated vesicle|coated pit|Golgi apparatus|nucleus|postsynaptic membrane|presynaptic membrane	1-phosphatidylinositol binding|clathrin heavy chain binding			urinary_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(157;7.42e-07)|all_hematologic(158;0.00092)				TGTTCATTGTTCTCATAACTC	0.328			NA	T	MLLT10|MLL	TALL|AML|								7	24					0	0	0.001984	0	0
FZD4	8322	broad.mit.edu	37	11	86662732	86662732	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:86662732C>A	uc001pce.2	-	2	1372	c.1066G>T	c.(1066-1068)GCA>TCA	p.A356S	PRSS23_uc001pcc.1_RNA	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	356	Helical; Name=4; (Potential).				canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GTTTTCACTGCGGGGATGGCC	0.483			NA											49	26					2.64894e-19	4.55017e-19	0.00361	1	0
FAT3	120114	broad.mit.edu	37	11	92086947	92086947	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:92086947C>A	uc001pdj.3	+	1	1686	c.1669C>A	c.(1669-1671)CGC>AGC	p.R557S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	557	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTCACCATACCGCCATGAAAG	0.418			NA								TCGA Ovarian(4;0.039)			17	40					3.45872e-05	3.89345e-05	0.004007	1	0
FAT3	120114	broad.mit.edu	37	11	92616385	92616385	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:92616385G>T	uc001pdj.3	+	23	12780	c.12763G>T	c.(12763-12765)GGG>TGG	p.G4255W	FAT3_uc001pdi.3_Missense_Mutation_p.G695W	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4255	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GATCGTGGACGGGCTGGGAGG	0.667			NA								TCGA Ovarian(4;0.039)			37	46					4.0492e-12	5.80671e-12	0.006999	1	0
MRE11A	4361	broad.mit.edu	37	11	94180593	94180593	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:94180593C>A	uc001peu.2	-	15	1764	c.1575G>T	c.(1573-1575)AGG>AGT	p.R525S	MRE11A_uc001pev.2_Missense_Mutation_p.R525S|MRE11A_uc009ywj.2_Missense_Mutation_p.R528S	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	525					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				GTGCTCTGGCCCTGGTCATAG	0.418			NA						Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				18	14					1.67942e-08	2.1089e-08	0.006122	1	0
BIRC2	329	broad.mit.edu	37	11	102239280	102239280	+	Splice_Site	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:102239280G>T	uc001pgy.2	+	6	2765	c.1366_splice	c.e6+1	p.D456_splice	BIRC2_uc010ruq.1_Splice_Site_p.D407_splice|BIRC2_uc010rur.1_Splice_Site_p.D456_splice	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2						cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		ATGGCATCAGGTATTTGGGGA	0.398			NA											19	13					2.4624e-09	3.1819e-09	0.008871	1	0
MMP7	4316	broad.mit.edu	37	11	102398608	102398608	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:102398608C>A	uc001phb.2	-	2	262	c.215G>T	c.(214-216)GGA>GTA	p.G72V	MMP7_uc009yxd.2_Missense_Mutation_p.G72V|MMP7_uc010rus.1_Missense_Mutation_p.G72V	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	72					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		GTTTAACATTCCAGTTATAGG	0.393			NA											23	24					3.10358e-05	3.50476e-05	0.002299	1	0
MMP8	4317	broad.mit.edu	37	11	102593335	102593335	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:102593335C>A	uc001phe.2	-	2	271	c.172G>T	c.(172-174)GTG>TTG	p.V58L	MMP8_uc010rut.1_5'UTR|MMP8_uc010ruu.1_Missense_Mutation_p.V35L	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	58					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		TCAACGATCACATTAGTGCCA	0.438			NA											29	24					1.5548e-18	2.6295e-18	0.005443	1	0
DYNC2H1	79659	broad.mit.edu	37	11	103124057	103124057	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:103124057C>A	uc001pho.2	+	66	10230	c.10086C>A	c.(10084-10086)TAC>TAA	p.Y3362*	DYNC2H1_uc001phn.1_Nonsense_Mutation_p.Y3369*|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3362	AAA 5 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TTATTGACTACAATGAAGAAT	0.348			NA											17	21					4.14922e-12	5.92033e-12	0.004007	1	0
DDI1	414301	broad.mit.edu	37	11	103907855	103907855	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:103907855C>A	uc001phr.2	+	1	548	c.305C>A	c.(304-306)CCT>CAT	p.P102H	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	102					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		ATTGCGGTGCCTGGGACGTCC	0.647			NA											14	63					2.31682e-05	2.61838e-05	0.003163	1	0
LAYN	143903	broad.mit.edu	37	11	111414669	111414669	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:111414669G>T	uc001plr.1	+	3	467	c.131G>T	c.(130-132)GGG>GTG	p.G44V	LAYN_uc001plp.1_Missense_Mutation_p.G36V|LAYN_uc001plq.1_Missense_Mutation_p.G44V|LAYN_uc001pls.1_Missense_Mutation_p.G36V|LAYN_uc010rwg.1_5'UTR|LAYN_uc010rwh.1_5'UTR	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	44	Extracellular (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		TGCCGGGGAGGGACACAGAGG	0.493	Ovarian(17;551 586 12136 22082 22900)		NA											9	43					5.4927e-09	7.02119e-09	0.004482	1	0
DRD2	1813	broad.mit.edu	37	11	113286302	113286302	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:113286302G>T	uc001pnz.2	-	4	885	c.564C>A	c.(562-564)GCC>GCA	p.A188A	DRD2_uc010rwv.1_Silent_p.A187A|DRD2_uc001poa.3_Silent_p.A188A|DRD2_uc001pob.3_Silent_p.A188A|DRD2_uc009yyr.1_Silent_p.A188A	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	188	Extracellular (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	AGACCACGAAGGCCGGGTTGG	0.602			NA											8	9					0.000274275	0.000296559	0.004482	1	0
DRD2	1813	broad.mit.edu	37	11	113287642	113287642	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:113287642C>G	uc001pnz.2	-	3	796	c.475G>C	c.(475-477)GTC>CTC	p.V159L	DRD2_uc010rwv.1_Missense_Mutation_p.V158L|DRD2_uc001poa.3_Missense_Mutation_p.V159L|DRD2_uc001pob.3_Missense_Mutation_p.V159L|DRD2_uc009yyr.1_Missense_Mutation_p.V159L	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	159	Helical; Name=4; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	AGGACCCAGACGATGGAGATC	0.592			NA											3	20					0	0	0.004672	0	0
HTR3A	3359	broad.mit.edu	37	11	113857438	113857438	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:113857438A>T	uc010rxb.1	+	7	1155	c.922A>T	c.(922-924)ACT>TCT	p.T308S	HTR3A_uc010rxa.1_Missense_Mutation_p.T308S|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.T287S	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	302	Extracellular (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	TGCCATCGGCACTCCTCTCAT	0.597			NA											16	17					0	0	0.00499	0	0
HTR3A	3359	broad.mit.edu	37	11	113857618	113857618	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:113857618G>A	uc010rxb.1	+	7	1335	c.1102G>A	c.(1102-1104)GTG>ATG	p.V368M	HTR3A_uc010rxa.1_Missense_Mutation_p.V336M|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.V315M	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	330	Cytoplasmic (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	TGTGCGGCTGGTGCACAAGCA	0.577			NA											17	16					0	0	0.004007	0	0
HTR3A	3359	broad.mit.edu	37	11	113857766	113857766	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:113857766C>T	uc010rxb.1	+	7	1483	c.1250C>T	c.(1249-1251)TCA>TTA	p.S417L	HTR3A_uc010rxa.1_Missense_Mutation_p.S385L|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.S364L	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	379	Cytoplasmic (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	GATGACTGCTCAGGTGAGAAA	0.577			NA											8	21					0	0	0.006214	0	0
APOA5	116519	broad.mit.edu	37	11	116661628	116661628	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:116661628C>T	uc001ppr.2	-	3	325	c.317G>A	c.(316-318)CGC>CAC	p.R106H	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Missense_Mutation_p.R106H|APOA5_uc009yzf.2_Missense_Mutation_p.R106H|APOA5_uc009yzg.2_Missense_Mutation_p.R132H	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	106	Potential.				acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		GGGCTGGAGGCGAGCCTTCAC	0.647			NA											15	17					0	0	0.003163	0	0
DSCAML1	57453	broad.mit.edu	37	11	117332278	117332278	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:117332278C>A	uc001prh.1	-	18	3482	c.3480G>T	c.(3478-3480)CTG>CTT	p.L1160L		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1100	Fibronectin type-III 3.|Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AAGTGATGGACAGGGCCCGGA	0.607			NA											26	16					2.48779e-11	3.4834e-11	0.005443	1	0
TMPRSS13	84000	broad.mit.edu	37	11	117774772	117774772	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:117774772C>A	uc001prs.1	-	11	1519	c.1426G>T	c.(1426-1428)GAC>TAC	p.D476Y	TMPRSS13_uc009yzr.1_Missense_Mutation_p.D155Y|TMPRSS13_uc001prt.1_Missense_Mutation_p.D155Y	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	471	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		TTCTTGAAGTCGATGAGATTG	0.527			NA											3	18					0.00024832	0.000270549	0.009096	1	0
MLL	4297	broad.mit.edu	37	11	118376564	118376564	+	Silent	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:118376564A>T	uc001pta.2	+	27	9971	c.9948A>T	c.(9946-9948)ACA>ACT	p.T3316T	MLL_uc001ptb.2_Silent_p.T3319T	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3316					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CGGCAGGCACATCAACAATAA	0.478			NA	T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								40	31					0	0	0.00623	0	0
PHLDB1	23187	broad.mit.edu	37	11	118498106	118498106	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:118498106G>T	uc001ptr.1	+	7	920	c.567G>T	c.(565-567)CTG>CTT	p.L189L	PHLDB1_uc010ryh.1_Silent_p.L188L|PHLDB1_uc001pts.2_Silent_p.L189L|PHLDB1_uc001ptt.2_Silent_p.L189L|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_5'UTR|PHLDB1_uc001ptw.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	189											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		ACAGTTCCCTGGTGAGCTCTA	0.562			NA											17	29					3.41278e-10	4.55038e-10	0.00499	1	0
DDX6	1656	broad.mit.edu	37	11	118650398	118650398	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:118650398T>C	uc001pub.2	-	4	673	c.312A>G	c.(310-312)AAA>AAG	p.K104K	DDX6_uc001puc.2_Silent_p.K104K	NM_004397	NP_004388	P26196	DDX6_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	104	Q motif.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|RNA-induced silencing complex|stress granule	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|RNA helicase activity			ovary(1)	1	all_hematologic(175;0.0839)	Renal(330;0.0183)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)|Hepatocellular(160;0.0893)|Breast(348;0.0979)|all_hematologic(192;0.103)		OV - Ovarian serous cystadenocarcinoma(223;3.39e-06)|BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Colorectal(284;0.0377)		GTAACTCCCGTTTCAAACAGT	0.343			NA	T	IGH@	B-NHL								8	6					0	0	0.004482	0	0
BCL9L	283149	broad.mit.edu	37	11	118773205	118773205	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:118773205T>A	uc001pug.2	-	6	2212	c.1247A>T	c.(1246-1248)GAC>GTC	p.D416V	BCL9L_uc009zal.2_Missense_Mutation_p.D411V	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	416	Pro-rich.|Necessary for interaction with CTNNB1 (By similarity).				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TCGCTCAATGTCTCGCAGCGT	0.682			NA											9	11					0	0	0.008291	0	0
C2CD2L	9854	broad.mit.edu	37	11	118982044	118982044	+	Silent	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:118982044A>T	uc001pvo.2	+	6	1229	c.870A>T	c.(868-870)CTA>CTT	p.L290L	C2CD2L_uc001pvn.2_Silent_p.L290L	NM_014807	NP_055622	O14523	C2C2L_HUMAN	transmembrane protein 24	290						integral to membrane					0						GGTTATTCCTACGGCAGCTTC	0.562			NA											16	64					0	0	0.00499	0	0
TRIM29	23650	broad.mit.edu	37	11	119998114	119998114	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:119998114T>G	uc001pwz.2	-	3	1188	c.1064A>C	c.(1063-1065)AAG>ACG	p.K355T	TRIM29_uc010rzi.1_Missense_Mutation_p.K94T|TRIM29_uc010rzj.1_Missense_Mutation_p.K88T|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	355					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		ATGCAGCACCTTGGCTCTCTC	0.562			NA											12	59					0	0	0.001368	0	0
GRIK4	2900	broad.mit.edu	37	11	120833279	120833279	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:120833279G>T	uc001pxn.2	+	18	2442	c.2155G>T	c.(2155-2157)GCC>TCC	p.A719S	GRIK4_uc009zav.1_Missense_Mutation_p.A719S|GRIK4_uc009zaw.1_Missense_Mutation_p.A719S|GRIK4_uc009zax.1_Missense_Mutation_p.A719S	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	719	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	TTCCAACTACGCCTTCCTCCT	0.537			NA											28	19					5.61819e-17	9.1432e-17	0.005443	1	0
UBASH3B	84959	broad.mit.edu	37	11	122669678	122669678	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:122669678T>A	uc001pyi.3	+	10	1746	c.1386T>A	c.(1384-1386)ATT>ATA	p.I462I		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	462	Protein tyrosine phosphatase (By similarity).					cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		GCAATACCATTATCGATCATG	0.438			NA											17	15					0	0	0.006122	0	0
OR10S1	219873	broad.mit.edu	37	11	123847751	123847751	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:123847751G>T	uc001pzm.1	-	1	648	c.648C>A	c.(646-648)AGC>AGA	p.S216R		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CGATGCCAATGCTGGCAAGCA	0.562			NA											8	15					5.18039e-06	6.01703e-06	0.00308	1	0
OR10G7	390265	broad.mit.edu	37	11	123908878	123908878	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:123908878C>G	uc001pzq.1	-	1	831	c.831G>C	c.(829-831)ACG>ACC	p.T277T		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GAGGAGTCAGCGTGGTGTAGA	0.502			NA											12	23					0	0	0.000978	0	0
OR8D1	283159	broad.mit.edu	37	11	124179963	124179963	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:124179963G>T	uc010sag.1	-	1	700	c.700C>A	c.(700-702)CGG>AGG	p.R234R		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GCTTTGGACCGGCCCTCTGAG	0.502			NA											20	14					5.35267e-07	6.40521e-07	0.007413	1	0
FEZ1	9638	broad.mit.edu	37	11	125325984	125325984	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:125325984C>A	uc001qbx.2	-	6	838	c.686G>T	c.(685-687)GGG>GTG	p.G229V	FEZ1_uc001qbw.2_Missense_Mutation_p.G19V|FEZ1_uc010sbc.1_Missense_Mutation_p.G200V	NM_005103	NP_005094	Q99689	FEZ1_HUMAN	zygin 1 isoform 1	229					axon guidance|cell adhesion|transport	microtubule|plasma membrane				central_nervous_system(3)|ovary(1)	4	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0934)		CAGCTCAGACCCAGACATGTG	0.657	Melanoma(180;509 2033 10762 15939 24711)		NA											11	8					3.86212e-05	4.31346e-05	0.008291	1	0
SPATA19	219938	broad.mit.edu	37	11	133715043	133715043	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:133715043G>T	uc001qgv.1	-	2	172	c.121C>A	c.(121-123)CAT>AAT	p.H41N		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	41					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		TTCAACCAATGATGTAGTACA	0.433			NA											14	16					4.75885e-15	7.31025e-15	0.00499	1	0
IQSEC3	440073	broad.mit.edu	37	12	247619	247619	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:247619C>A	uc001qhw.1	+	1	187	c.181C>A	c.(181-183)CTG>ATG	p.L61M	IQSEC3_uc001qhu.1_Missense_Mutation_p.L61M|IQSEC3_uc001qht.1_Missense_Mutation_p.L146M|uc001qhv.1_Splice_Site	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	364					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		GGCCGAGAGCCTGGCGGCCGA	0.687			NA											3	9					0.004672	0.00490267	0.004672	1	0
TEAD4	7004	broad.mit.edu	37	12	3104151	3104151	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:3104151G>T	uc010sej.1	+	3	493	c.216G>T	c.(214-216)AAG>AAT	p.K72N	TEAD4_uc010sek.1_Missense_Mutation_p.K72N|TEAD4_uc001qln.2_Intron	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	73	TEA.				hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			ACGAGGGCAAGATGTATGGTA	0.627			NA											50	5					1.89013e-27	3.65202e-27	0.00361	1	0
VWF	7450	broad.mit.edu	37	12	6219732	6219732	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:6219732C>G	uc001qnn.1	-	5	590	c.340G>C	c.(340-342)GCC>CCC	p.A114P	VWF_uc010set.1_Missense_Mutation_p.A114P|VWF_uc001qno.1_Missense_Mutation_p.A151P	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	114	VWFD 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCTTTGGAGGCATAGGGCATG	0.532			NA											24	35					0	0	0.00278	0	0
USP5	8078	broad.mit.edu	37	12	6970680	6970680	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:6970680G>T	uc001qri.3	+	13	1631	c.1572G>T	c.(1570-1572)CGG>CGT	p.R524R	USP5_uc001qrh.3_Silent_p.R524R	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	524					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						AACTGGTTCGGGCCCAGGTGC	0.607			NA											54	8					4.17328e-34	8.47754e-34	0.00361	1	0
A2M	2	broad.mit.edu	37	12	9265129	9265129	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:9265129G>T	uc001qvk.1	-	3	387	c.274C>A	c.(274-276)CCA>ACA	p.P92T	A2M_uc009zgk.1_Intron	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	92					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	GAAGACTTTGGGACCTGAAAT	0.488			NA											12	1					5.50884e-06	6.34675e-06	0.001368	1	0
PRB1	5542	broad.mit.edu	37	12	11506399	11506399	+	Missense_Mutation	SNP	T	T	C	rs111543911		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:11506399T>C	uc001qzw.1	-	4	675	c.638A>G	c.(637-639)CAA>CGA	p.Q213R	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	274	11.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).	Q -> R (in Ref. 5; CAA30395).		extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGAGGAGATTGGGAACTTCG	0.612			NA											5	11					0	0	0.000978	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18641550	18641550	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:18641550A>T	uc001rdt.2	+	18	2665	c.2549A>T	c.(2548-2550)GAC>GTC	p.D850V	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.D891V|PIK3C2G_uc010sic.1_Missense_Mutation_p.D669V	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	850					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TCTGCCAGTGACCATCAAAGA	0.338			NA											6	3					0	0	0.001168	0	0
PDE3A	5139	broad.mit.edu	37	12	20807033	20807033	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:20807033G>A	uc001reh.1	+	15	3100	c.3078G>A	c.(3076-3078)TGG>TGA	p.W1026*		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1026	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CTGGAAAATGGGTGGAAGACA	0.483			NA											15	10					0	0	0.004007	0	0
GYS2	2998	broad.mit.edu	37	12	21689983	21689983	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:21689983C>T	uc001rfb.2	-	16	2272	c.2017G>A	c.(2017-2019)GAG>AAG	p.E673K		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	673					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						CTTTCAGCCTCCTCTTCCTCA	0.468	Colon(149;9 1820 3690 10544 50424)		NA											13	7					0	0	0.001368	0	0
BCAT1	586	broad.mit.edu	37	12	25047340	25047341	+	Nonsense_Mutation	DNP	CA	CA	AG			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:25047340_25047341CA>AG	uc001rgd.3	-	3	589_590	c.147_148TG>CT	c.(145-150)TTTGGA>TTCTGA	p.G50*	BCAT1_uc001rgc.2_Nonsense_Mutation_p.G49*|BCAT1_uc010six.1_Nonsense_Mutation_p.G62*|BCAT1_uc010siy.1_Nonsense_Mutation_p.G50*|BCAT1_uc001rge.3_Nonsense_Mutation_p.G26*	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	50					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	AACACAGTTCCAAAAACCAGAT	0.436			NA											6	3					0	0	0.004672	0	0
ALG10	84920	broad.mit.edu	37	12	34179644	34179644	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:34179644G>T	uc001rlm.2	+	3	1535	c.1216G>T	c.(1216-1218)GTT>TTT	p.V406F		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	asparagine-linked glycosylation 10 homolog	406	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			skin(1)	1	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				CTTGTTCACTGTTATAGTTCC	0.353			NA											43	17					2.2871e-25	4.29094e-25	0.007835	1	0
KIF21A	55605	broad.mit.edu	37	12	39751058	39751058	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:39751058G>A	uc001rly.2	-	9	1543	c.1397C>T	c.(1396-1398)GCC>GTC	p.A466V	KIF21A_uc001rlx.2_Missense_Mutation_p.A466V|KIF21A_uc001rlz.2_Missense_Mutation_p.A466V|KIF21A_uc010skl.1_Missense_Mutation_p.A466V|KIF21A_uc001rma.1_Missense_Mutation_p.A474V	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	466	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				ACCTGCTCTGGCAAGAACATG	0.438			NA											32	11					0	0	0.003755	0	0
NELL2	4753	broad.mit.edu	37	12	44913928	44913928	+	Missense_Mutation	SNP	G	G	T	rs147794047		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:44913928G>T	uc001rog.2	-	19	2855	c.2260C>A	c.(2260-2262)CGC>AGC	p.R754S	NELL2_uc001rof.3_Missense_Mutation_p.R753S|NELL2_uc001roh.2_Missense_Mutation_p.R754S|NELL2_uc009zkd.2_Missense_Mutation_p.R706S|NELL2_uc010skz.1_Missense_Mutation_p.R804S|NELL2_uc010sla.1_Missense_Mutation_p.R777S	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	754	VWFC 4.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		GTGACACAGCGCGGGCAGCAC	0.542			NA											14	7					4.36969e-10	5.78294e-10	0.001855	1	0
RAPGEF3	10411	broad.mit.edu	37	12	48145203	48145203	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:48145203C>A	uc009zkp.2	-	4	795	c.355G>T	c.(355-357)GAT>TAT	p.D119Y	RAPGEF3_uc009zkq.2_Missense_Mutation_p.D119Y|RAPGEF3_uc001rpz.3_Missense_Mutation_p.D161Y|RAPGEF3_uc009zkr.2_Intron|RAPGEF3_uc009zks.2_Missense_Mutation_p.D173Y|RAPGEF3_uc001rqb.3_Missense_Mutation_p.D161Y	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	119					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		GCACCTTCATCCAGCAGCACC	0.672			NA											14	3					4.14922e-12	5.92033e-12	0.004007	1	0
TUBA1B	10376	broad.mit.edu	37	12	49521984	49521984	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:49521984T>C	uc001rtm.2	-	4	1334	c.1113A>G	c.(1111-1113)GTA>GTG	p.V371V	TUBA1B_uc001rto.2_Silent_p.V336V|TUBA1B_uc001rtk.2_Silent_p.V336V|TUBA1B_uc001rtl.2_Silent_p.V336V|TUBA1B_uc001rtn.2_Silent_p.V218V|uc010smg.1_5'UTR	NM_006082	NP_006073	P68363	TBA1B_HUMAN	tubulin, alpha, ubiquitous	371					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding				0						CAGCTCTCTGTACCTTGGCCA	0.577			NA											22	7					0	0	0.005443	0	0
GALNT6	11226	broad.mit.edu	37	12	51752990	51752990	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:51752990C>A	uc001ryk.2	-	7	1519	c.1294G>T	c.(1294-1296)GCA>TCA	p.A432S	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.A432S|GALNT6_uc001ryj.1_5'UTR	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	432	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						CAGACCTCTGCCAGGCGCACT	0.542			NA											108	28					3.79737e-34	7.72494e-34	0.00361	1	0
TBK1	29110	broad.mit.edu	37	12	64860683	64860683	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:64860683G>T	uc001ssc.1	+	5	423	c.361G>T	c.(361-363)GGT>TGT	p.G121C		NM_013254	NP_037386	Q9UHD2	TBK1_HUMAN	TANK-binding kinase 1	121	Protein kinase.				I-kappaB kinase/NF-kappaB cascade|innate immune response|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|large_intestine(1)|breast(1)	5				GBM - Glioblastoma multiforme(28;0.0386)		TGTTGAAGTGGGTGGAATGAA	0.358			NA											28	8					7.01153e-11	9.60041e-11	0.007291	1	0
CAND1	55832	broad.mit.edu	37	12	67699358	67699358	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:67699358G>T	uc001stn.2	+	10	2347	c.1910G>T	c.(1909-1911)GGG>GTG	p.G637V	CAND1_uc001sto.2_Missense_Mutation_p.G147V	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	637	HEAT 14.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		CTGATTGCTGGGTCACCTTTG	0.408			NA											57	8					2.93687e-30	5.80043e-30	0.00361	1	0
RAB3IP	117177	broad.mit.edu	37	12	70195437	70195437	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:70195437G>A	uc001svp.2	+	8	1561	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K	RAB3IP_uc001svm.2_Missense_Mutation_p.E356K|RAB3IP_uc001svn.2_Missense_Mutation_p.E356K|RAB3IP_uc001svo.2_Intron|RAB3IP_uc001svq.2_Missense_Mutation_p.E372K|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_Intron|RAB3IP_uc001svt.2_Missense_Mutation_p.E150K	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	372					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			TCTAAGCATTGAACCAGTGGG	0.398			NA											19	6					0	0	0.001882	0	0
E2F7	144455	broad.mit.edu	37	12	77444526	77444526	+	Splice_Site	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:77444526T>A	uc001sym.3	-	4	606	c.370_splice	c.e4-1	p.L124_splice	E2F7_uc001syn.2_Splice_Site_p.L124_splice	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7						cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						AACATCAAGCTACAGAGGGCA	0.473			NA											19	4					0	0	0.007413	0	0
MYF5	4617	broad.mit.edu	37	12	81111175	81111175	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:81111175G>T	uc001szg.2	+	1	468	c.333G>T	c.(331-333)ACG>ACT	p.T111T		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	111	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						GGTGTACCACGACCAACCCCA	0.592			NA											33	13					2.08457e-15	3.2371e-15	0.002096	1	0
TMTC2	160335	broad.mit.edu	37	12	83251126	83251126	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:83251126G>T	uc001szt.2	+	2	853	c.421G>T	c.(421-423)GAT>TAT	p.D141Y	TMTC2_uc001szr.1_Missense_Mutation_p.D141Y|TMTC2_uc001szs.1_Missense_Mutation_p.D141Y|TMTC2_uc010suk.1_Intron	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	141	Helical; (Potential).					endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						GGGACGAGCCGATGTCGGGGC	0.542			NA											31	2					3.03874e-20	5.3094e-20	0.003271	1	0
LRRIQ1	84125	broad.mit.edu	37	12	85460613	85460613	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:85460613G>T	uc001tac.2	+	10	2743	c.2632G>T	c.(2632-2634)GGT>TGT	p.G878C	LRRIQ1_uc001tab.1_Missense_Mutation_p.G878C	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	878	LRR 3.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TTCTCTTCATGGTTTGGATGG	0.284			NA											18	5					0.00074312	0.000790884	0.006122	1	0
LRRIQ1	84125	broad.mit.edu	37	12	85500333	85500333	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:85500333G>A	uc001tac.2	+	15	3428	c.3317G>A	c.(3316-3318)TGC>TAC	p.C1106Y	LRRIQ1_uc001tab.1_Missense_Mutation_p.C1106Y	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1106										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TTTGATGCATGCTATTCTCTC	0.328			NA											43	10					0	0	0.003214	0	0
C12orf12	196477	broad.mit.edu	37	12	91347991	91347991	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:91347991C>A	uc001tbj.2	-	1	963	c.529G>T	c.(529-531)GAG>TAG	p.E177*		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	177										central_nervous_system(1)|pancreas(1)	2						TCTCTCCACTCATACAGCTTG	0.667			NA											36	12					1.60099e-16	2.56158e-16	0.004878	1	0
SOCS2	8835	broad.mit.edu	37	12	93968550	93968550	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:93968550G>T	uc001tcw.1	+	3	782	c.192G>T	c.(190-192)GAG>GAT	p.E64D	SOCS2_uc001tcx.1_Missense_Mutation_p.E64D|SOCS2_uc009zsu.2_3'UTR|SOCS2_uc001tcy.1_Missense_Mutation_p.E64D|SOCS2_uc001tcz.2_3'UTR	NM_003877	NP_003868	O14508	SOCS2_HUMAN	suppressor of cytokine signaling-2	64	SH2.				anti-apoptosis|growth hormone receptor signaling pathway|JAK-STAT cascade|negative regulation of signal transduction|regulation of cell growth|response to estradiol stimulus	cytoplasm	growth hormone receptor binding|insulin-like growth factor receptor binding|JAK pathway signal transduction adaptor activity|prolactin receptor binding|SH3/SH2 adaptor activity			lung(1)	1						AATTAAAAGAGGCACCAGAAG	0.373			NA											9	1					7.48243e-07	8.9163e-07	0.006214	1	0
PLXNC1	10154	broad.mit.edu	37	12	94562941	94562941	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:94562941C>A	uc001tdc.2	+	2	1324	c.1075C>A	c.(1075-1077)CAA>AAA	p.Q359K		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	359	Extracellular (Potential).|Sema.				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						AGAAGGGGATCAACCTGAAAG	0.383			NA											8	3					0.00307968	0.00324849	0.00308	1	0
ANKS1B	56899	broad.mit.edu	37	12	100377919	100377919	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:100377919C>T	uc001tge.1	-	1	514	c.97G>A	c.(97-99)GGT>AGT	p.G33S	ANKS1B_uc001tgf.1_5'UTR|ANKS1B_uc009ztt.1_Missense_Mutation_p.G33S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	33						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		CCGGATCCACCGCCCAGGATC	0.577			NA											23	6					0	0	0.00278	0	0
SSH1	54434	broad.mit.edu	37	12	109192936	109192936	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:109192936C>A	uc001tnm.2	-	13	1276	c.1189G>T	c.(1189-1191)GTG>TTG	p.V397L	SSH1_uc001tnl.2_Missense_Mutation_p.V85L|SSH1_uc010sxg.1_Missense_Mutation_p.V408L|SSH1_uc001tnn.3_Missense_Mutation_p.V397L	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	397	Tyrosine-protein phosphatase.				actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						GAGCGACTCACGCCCATTTTG	0.537			NA											11	1					0.00010058	0.000111028	0.001368	1	0
CUX2	23316	broad.mit.edu	37	12	111731317	111731317	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:111731317C>A	uc001tsa.1	+	6	657	c.504C>A	c.(502-504)CCC>CCA	p.P168P	CUX2_uc001tsb.1_Silent_p.P223P	NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	168						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CAGGCATTCCCGGGAAAGCCC	0.483			NA											4	10					0.000602214	0.000642362	0.000602	1	0
TMEM116	89894	broad.mit.edu	37	12	112375995	112375995	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:112375995C>A	uc001ttc.1	-	8	715	c.59G>T	c.(58-60)CGA>CTA	p.R20L	TMEM116_uc001ttd.1_Missense_Mutation_p.R112L|TMEM116_uc001tte.1_Missense_Mutation_p.R77L|TMEM116_uc001ttf.1_Missense_Mutation_p.R20L|TMEM116_uc001ttg.1_RNA|TMEM116_uc001tth.1_5'UTR|TMEM116_uc001tti.1_Missense_Mutation_p.R112L	NM_138341	NP_612350	Q8NCL8	TM116_HUMAN	transmembrane protein 116	20						integral to membrane				ovary(1)	1						TTGACAAACTCGACAAGTATA	0.323			NA											14	42					2.61681e-11	3.65328e-11	0.00245	1	0
RPH3A	22895	broad.mit.edu	37	12	113303256	113303256	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:113303256G>T	uc010syl.1	+	6	630	c.268G>T	c.(268-270)GTG>TTG	p.V90L	RPH3A_uc001ttz.2_Missense_Mutation_p.V90L|RPH3A_uc001tty.2_Missense_Mutation_p.V86L|RPH3A_uc009zwe.1_Missense_Mutation_p.V86L|RPH3A_uc010sym.1_Missense_Mutation_p.V41L|RPH3A_uc001tua.2_5'Flank	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	90	RabBD.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		GAGGAAGAACGTGGCTGGAGA	0.537			NA											45	27					1.48734e-19	2.57347e-19	0.003214	1	0
RPH3A	22895	broad.mit.edu	37	12	113307593	113307593	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:113307593C>G	uc010syl.1	+	9	1002	c.640C>G	c.(640-642)CAG>GAG	p.Q214E	RPH3A_uc001ttz.2_Missense_Mutation_p.Q214E|RPH3A_uc001tty.2_Missense_Mutation_p.Q210E|RPH3A_uc009zwe.1_Missense_Mutation_p.Q210E|RPH3A_uc010sym.1_Missense_Mutation_p.Q165E|RPH3A_uc001tua.2_5'UTR	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	214	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		GGGCCCGGGTCAGAAGACAGG	0.453			NA											59	30					0	0	0.00361	0	0
OAS1	4938	broad.mit.edu	37	12	113354411	113354411	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:113354411C>A	uc001tud.2	+	4	858	c.752C>A	c.(751-753)ACA>AAA	p.T251K	OAS1_uc010syn.1_Missense_Mutation_p.T250K|OAS1_uc010syo.1_3'UTR|OAS1_uc001tub.2_Missense_Mutation_p.T251K|OAS1_uc001tuc.2_Missense_Mutation_p.T251K|OAS1_uc009zwf.2_Missense_Mutation_p.T250K	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	251					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						CATTTCAACACAGCCCAGGGA	0.463			NA											36	18					3.03874e-20	5.3094e-20	0.003271	1	0
RBM19	9904	broad.mit.edu	37	12	114397122	114397122	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:114397122C>A	uc009zwi.2	-	5	610	c.466G>T	c.(466-468)GCT>TCT	p.A156S	RBM19_uc001tvn.3_Missense_Mutation_p.A156S|RBM19_uc001tvm.2_Missense_Mutation_p.A156S	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	156					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GAGGGCTCAGCATCCAGGCCA	0.602			NA											10	56					1.33987e-11	1.88722e-11	0.008291	1	0
TBX5	6910	broad.mit.edu	37	12	114793770	114793770	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:114793770C>A	uc001tvo.2	-	9	1619	c.1124G>T	c.(1123-1125)CGG>CTG	p.R375L	TBX5_uc001tvp.2_Missense_Mutation_p.R375L|TBX5_uc001tvq.2_Missense_Mutation_p.R325L	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	375					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding	p.R375W(1)		ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		GCAAGCTTGCCGCTGTGCCGA	0.592	NSCLC(152;1358 1980 4050 23898 40356)		NA											47	28					1.63429e-32	3.28241e-32	0.00361	1	0
TBX3	6926	broad.mit.edu	37	12	115118881	115118881	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:115118881C>A	uc001tvt.1	-	2	1424	c.460G>T	c.(460-462)GAC>TAC	p.D154Y	TBX3_uc001tvu.1_Missense_Mutation_p.D154Y|TBX3_uc010syw.1_Missense_Mutation_p.D154Y	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	154	T-box; first part.				anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		GCTATAATGTCCATCAATAAA	0.388			NA											52	32					1.11015e-26	2.11627e-26	0.00361	1	0
KSR2	283455	broad.mit.edu	37	12	117968764	117968764	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:117968764G>A	uc001two.2	-	12	1752	c.1697C>T	c.(1696-1698)CCG>CTG	p.P566L		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	595					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGAGGTCACCGGATGCAGGAT	0.542			NA											36	70					0	0	0.006999	0	0
CIT	11113	broad.mit.edu	37	12	120156602	120156602	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:120156602T>C	uc001txi.1	-	30	3832	c.3779A>G	c.(3778-3780)GAG>GGG	p.E1260G	CIT_uc001txh.1_Missense_Mutation_p.E779G|CIT_uc001txj.1_Missense_Mutation_p.E1302G	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1260	Potential.|Interaction with Rho/Rac.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CAGCTTCAGCTCATTGTACTG	0.547			NA											3	54					0	0	0.004672	0	0
CIT	11113	broad.mit.edu	37	12	120171981	120171981	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:120171981T>A	uc001txi.1	-	25	3265	c.3212A>T	c.(3211-3213)GAG>GTG	p.E1071V	CIT_uc001txh.1_Missense_Mutation_p.E605V|CIT_uc001txj.1_Missense_Mutation_p.E1113V	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1071	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GCTCTGTTTCTCGGTGTCCAG	0.512			NA											28	13					0	0	0.009535	0	0
KDM2B	84678	broad.mit.edu	37	12	122012500	122012500	+	Splice_Site	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:122012500T>C	uc001uat.2	-	4	455	c.351_splice	c.e4-1	p.K117_splice	KDM2B_uc001uas.2_Splice_Site_p.K86_splice|KDM2B_uc001uau.2_Splice_Site|KDM2B_uc001uav.3_Splice_Site_p.K117_splice	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform						embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						TCAGGCATCCTGGGGAAAGAG	0.547			NA											5	38					0	0	0.001984	0	0
MLXIP	22877	broad.mit.edu	37	12	122615452	122615452	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:122615452C>T	uc001ubq.2	+	7	972	c.972C>T	c.(970-972)GAC>GAT	p.D324D	MLXIP_uc001ubr.2_Silent_p.D75D|MLXIP_uc001ubs.1_5'UTR|MLXIP_uc001ubt.2_5'Flank	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	324	Transactivation domain.|Required for cytoplasmic localization.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CTAACCTGGACTTCATGGACA	0.547	Esophageal Squamous(105;787 1493 16200 18566 52466)		NA									OREG0022218	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	24					0	0	0.00361	0	0
DHX37	57647	broad.mit.edu	37	12	125449024	125449024	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:125449024G>T	uc001ugy.2	-	15	2060	c.1961C>A	c.(1960-1962)TCC>TAC	p.S654Y		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	654	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		GACACGGAAGGAGGATACGCC	0.622			NA											25	18					9.57634e-11	1.30871e-10	0.00333	1	0
TMEM132B	114795	broad.mit.edu	37	12	126139074	126139074	+	Missense_Mutation	SNP	C	C	A	rs111507651		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:126139074C>A	uc001uhe.1	+	9	3063	c.3055C>A	c.(3055-3057)CCA>ACA	p.P1019T	TMEM132B_uc001uhf.1_Missense_Mutation_p.P531T	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	1019	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TTCTTCGGGCCCAAAGAGGAA	0.453			NA											14	17					2.61681e-11	3.65328e-11	0.00245	1	0
RIMBP2	23504	broad.mit.edu	37	12	130935811	130935811	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:130935811G>T	uc001uil.2	-	5	546	c.382C>A	c.(382-384)CCG>ACG	p.P128T	RIMBP2_uc001uim.2_Missense_Mutation_p.P36T	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	128						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		AGAGGCTCCGGCCTGTCACCA	0.612			NA											19	8					1.00905e-13	1.49675e-13	0.008871	1	0
POLE	5426	broad.mit.edu	37	12	133244114	133244114	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:133244114C>A	uc001uks.1	-	20	2338	c.2294G>T	c.(2293-2295)CGT>CTT	p.R765L	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.R738L	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	765					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GAACTCGTAACGCCTGTCCCG	0.572			NA						DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					67	39					2.40655e-23	4.41615e-23	0.00361	1	0
TUBA3C	7278	broad.mit.edu	37	13	19753574	19753574	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:19753574C>A	uc009zzj.2	-	2	182	c.133G>T	c.(133-135)GGG>TGG	p.G45W		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	45					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GAGTCGTCCCCACCACCAATG	0.562			NA											21	47					4.26978e-12	6.07409e-12	0.00333	1	0
ZMYM2	7750	broad.mit.edu	37	13	20579273	20579273	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:20579273A>G	uc001umr.2	+	6	1491	c.1193A>G	c.(1192-1194)CAG>CGG	p.Q398R	ZMYM2_uc001umq.2_Missense_Mutation_p.Q311R|ZMYM2_uc001ums.2_Missense_Mutation_p.Q398R|ZMYM2_uc001umt.2_Missense_Mutation_p.Q398R|ZMYM2_uc010tco.1_RNA	NM_003453	NP_003444	Q9UBW7	ZMYM2_HUMAN	zinc finger protein 198	398	MYM-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding			lung(3)|ovary(2)|prostate(1)	6		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)		GAGTCCTTCCAGGAATTCTGT	0.323			NA											14	25					0	0	0.006122	0	0
MIPEP	4285	broad.mit.edu	37	13	24415500	24415500	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:24415500C>A	uc001uox.3	-	11	1334	c.1234G>T	c.(1234-1236)GTG>TTG	p.V412L		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	412					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		TCGCTCCACACCTCTCCTTTT	0.493			NA											7	19					0.000157383	0.000172794	0.00308	1	0
RNF17	56163	broad.mit.edu	37	13	25433235	25433235	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:25433235C>A	uc001upr.2	+	26	3748	c.3707C>A	c.(3706-3708)GCA>GAA	p.A1236E	RNF17_uc010tdd.1_Missense_Mutation_p.A1095E|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.A1232E|RNF17_uc001ups.2_Missense_Mutation_p.A1175E|RNF17_uc010aac.2_Missense_Mutation_p.A434E|RNF17_uc010aad.2_Missense_Mutation_p.A288E	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1236	Tudor 3.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GAAGCATGTGCAGTAAGAGGA	0.383			NA											16	19					1.15088e-07	1.40192e-07	0.004007	1	0
MTUS2	23281	broad.mit.edu	37	13	29598964	29598964	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:29598964G>T	uc001usl.3	+	1	217	c.159G>T	c.(157-159)GAG>GAT	p.E53D		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	43						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TCATGTTGGAGGTCAGCTCCT	0.423			NA											15	25					2.32078e-09	3.00436e-09	0.003163	1	0
C13orf26	122046	broad.mit.edu	37	13	31506870	31506870	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:31506870C>A	uc001uti.2	+	1	37	c.18C>A	c.(16-18)CCC>CCA	p.P6P	uc001utg.1_5'Flank	NM_152325	NP_689538	Q8N6G2	CM026_HUMAN	hypothetical protein LOC122046	6										ovary(2)|skin(1)	3		Lung SC(185;0.0281)		all cancers(112;0.0176)|Epithelial(112;0.0768)|OV - Ovarian serous cystadenocarcinoma(117;0.0852)		AGCCTGGGCCCAGGGCTCCGG	0.687			NA											8	16					1.12685e-05	1.28783e-05	0.004482	1	0
RXFP2	122042	broad.mit.edu	37	13	32355867	32355867	+	Nonsense_Mutation	SNP	C	C	A	rs144275111		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:32355867C>A	uc001utt.2	+	10	916	c.845C>A	c.(844-846)TCG>TAG	p.S282*	RXFP2_uc010aba.2_Nonsense_Mutation_p.S265*	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	282	LRR 7.|Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TCGTGCGATTCGCTCACAGTG	0.323			NA											16	15					9.7654e-05	0.000107965	0.007413	1	0
NBEA	26960	broad.mit.edu	37	13	35923251	35923251	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:35923251G>C	uc001uvb.2	+	37	6116	c.5910G>C	c.(5908-5910)CTG>CTC	p.L1970L	NBEA_uc010abi.2_Silent_p.L626L	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1970						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TTAGATTACTGTGCCATGCTA	0.323			NA											8	18					0	0	0.004482	0	0
MAB21L1	4081	broad.mit.edu	37	13	36049778	36049778	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:36049778G>T	uc001uvc.2	-	1	1055	c.498C>A	c.(496-498)TAC>TAA	p.Y166*	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	166					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		TCTGCACCACGTACCTATCTC	0.592			NA											16	18					1.5739e-10	2.13247e-10	0.004007	1	0
CCNA1	8900	broad.mit.edu	37	13	37014166	37014166	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:37014166C>A	uc001uvr.3	+	6	1294	c.944C>A	c.(943-945)ACC>AAC	p.T315N	CCNA1_uc010teo.1_Missense_Mutation_p.T271N|CCNA1_uc010abq.2_Missense_Mutation_p.T271N|CCNA1_uc010abp.2_Missense_Mutation_p.T271N|CCNA1_uc001uvs.3_Missense_Mutation_p.T314N|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	315					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		GTCTATATCACCGATGATACA	0.383			NA											24	28					3.5997e-14	5.44158e-14	0.002299	1	0
TRPC4	7223	broad.mit.edu	37	13	38211559	38211559	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:38211559C>A	uc001uws.2	-	11	2650	c.2415G>T	c.(2413-2415)CCG>CCT	p.P805P	TRPC4_uc010abv.2_Silent_p.P385P|TRPC4_uc001uwt.2_Intron|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Silent_p.P632P|TRPC4_uc010abx.2_Silent_p.P810P|TRPC4_uc010aby.2_Intron	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	805	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CTGCTGATCTCGGATGAATCA	0.443			NA											33	39					6.00712e-18	1.00401e-17	0.002445	1	0
TRPC4	7223	broad.mit.edu	37	13	38248495	38248495	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:38248495C>T	uc001uws.2	-	5	1479	c.1244G>A	c.(1243-1245)TGG>TAG	p.W415*	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Nonsense_Mutation_p.W415*|TRPC4_uc010tey.1_Nonsense_Mutation_p.W415*|TRPC4_uc010abw.2_Nonsense_Mutation_p.W242*|TRPC4_uc010abx.2_Nonsense_Mutation_p.W415*|TRPC4_uc010aby.2_Nonsense_Mutation_p.W415*	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	415	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AATTTCTCCCCATATGAAGCC	0.303			NA											10	17					0	0	0.006214	0	0
STOML3	161003	broad.mit.edu	37	13	39542626	39542626	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:39542626G>T	uc001uwx.2	-	6	700	c.562C>A	c.(562-564)CGA>AGA	p.R188R	STOML3_uc010tez.1_Silent_p.R179R	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	188	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		ATTTCCACTCGGGCCACCCGG	0.502			NA											21	48					6.44725e-10	8.51659e-10	0.002299	1	0
LHFP	10186	broad.mit.edu	37	13	40175298	40175298	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:40175298C>A	uc001uxf.2	-	2	567	c.56G>T	c.(55-57)TGT>TTT	p.C19F		NM_005780	NP_005771	Q9Y693	LHFP_HUMAN	lipoma HMGIC fusion partner precursor	19						integral to membrane	DNA binding		HMGA2/LHFP(2)	soft_tissue(2)|lung(1)|breast(1)	4		Lung NSC(96;3.55e-06)|Breast(139;0.00408)|Ovarian(182;0.0107)|Prostate(109;0.0118)|Lung SC(185;0.0719)|Hepatocellular(188;0.114)		OV - Ovarian serous cystadenocarcinoma(117;6.48e-46)|Epithelial(112;8.43e-42)|all cancers(112;1.42e-36)|GBM - Glioblastoma multiforme(144;0.00187)|BRCA - Breast invasive adenocarcinoma(63;0.00886)|KIRC - Kidney renal clear cell carcinoma(186;0.048)|Kidney(163;0.0601)|LUSC - Lung squamous cell carcinoma(192;0.105)		GGTGGCAGCACAAAGAAAAGA	0.532			NA	T	HMGA2	lipoma								14	32					3.27435e-08	4.07221e-08	0.00245	1	0
WBP4	11193	broad.mit.edu	37	13	41656988	41656988	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:41656988A>C	uc001uxt.2	+	10	1182	c.1069A>C	c.(1069-1071)AAA>CAA	p.K357Q	WBP4_uc010tfd.1_Missense_Mutation_p.K336Q	NM_007187	NP_009118	O75554	WBP4_HUMAN	WW domain-containing binding protein 4	357					nuclear mRNA cis splicing, via spliceosome	nuclear speck|spliceosomal complex	nucleic acid binding|proline-rich region binding|zinc ion binding			breast(2)|kidney(1)	3		Lung NSC(96;3.55e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;3.11e-09)|Epithelial(112;3.37e-06)|OV - Ovarian serous cystadenocarcinoma(117;8.3e-05)|GBM - Glioblastoma multiforme(144;0.00102)|BRCA - Breast invasive adenocarcinoma(63;0.07)		CCCAGTCTTCAAAAAGAGAAG	0.403			NA											11	16					0	0	0.001368	0	0
C13orf31	144811	broad.mit.edu	37	13	44455341	44455341	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:44455341G>A	uc010acg.2	+	2	705	c.220G>A	c.(220-222)GAA>AAA	p.E74K	CCDC122_uc010acf.2_5'Flank|C13orf31_uc001uzf.3_Missense_Mutation_p.E74K	NM_001128303	NP_001121775	Q8IV20	CM031_HUMAN	hypothetical protein LOC144811	74											0		Lung NSC(96;0.000163)|all_hematologic(4;0.0127)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Breast(139;0.0364)|Lung SC(185;0.0367)|Acute lymphoblastic leukemia(4;0.138)		GBM - Glioblastoma multiforme(144;0.000573)|BRCA - Breast invasive adenocarcinoma(63;0.121)		AGCTCTCTTGGAAGAATTTGA	0.358			NA											15	18					0	0	0.00499	0	0
SLC25A30	253512	broad.mit.edu	37	13	45975271	45975271	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:45975271C>A	uc001vag.2	-	7	698	c.561G>T	c.(559-561)AAG>AAT	p.K187N	SLC25A30_uc010tfs.1_Missense_Mutation_p.K112N|SLC25A30_uc001vah.2_Missense_Mutation_p.K112N|SLC25A30_uc010tft.1_Missense_Mutation_p.K136N|SLC25A30_uc001vaf.2_Missense_Mutation_p.K43N	NM_001010875	NP_001010875	Q5SVS4	KMCP1_HUMAN	solute carrier family 25, member 30	187	Solcar 2.				mitochondrial transport	integral to membrane|mitochondrial inner membrane	binding			breast(1)	1		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.95e-05)		TAAGATGCTTCTTGGTGATGT	0.403			NA											22	22					9.39395e-14	1.4022e-13	0.00632	1	0
ZC3H13	23091	broad.mit.edu	37	13	46559869	46559869	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:46559869T>C	uc010tfw.1	-	9	1289	c.1283A>G	c.(1282-1284)AAG>AGG	p.K428R	ZC3H13_uc001vas.1_Missense_Mutation_p.K428R|ZC3H13_uc001vat.1_Missense_Mutation_p.K428R	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	428	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		TCTTGAGTCCTTTTCTCTGTC	0.403	Esophageal Squamous(187;747 2077 11056 31291 44172)		NA											3	68					0	0	0.004672	0	0
HTR2A	3356	broad.mit.edu	37	13	47469908	47469908	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:47469908C>A	uc001vbq.2	-	1	268	c.134G>T	c.(133-135)TGG>TTG	p.W45L	HTR2A_uc001vbr.2_Intron|HTR2A_uc010acr.2_Missense_Mutation_p.W45L	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	45	Extracellular (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GTCGACTGTCCAGTTAAATGC	0.448			NA											14	25					2.31682e-05	2.61838e-05	0.003163	1	0
MLNR	2862	broad.mit.edu	37	13	49796399	49796399	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:49796399C>A	uc010tgj.1	+	2	1125	c.1125C>A	c.(1123-1125)TCC>TCA	p.S375S		NM_001507	NP_001498	O43193	MTLR_HUMAN	motilin receptor	375	Cytoplasmic (Potential).				digestion	integral to plasma membrane	growth hormone-releasing hormone receptor activity				0		all_lung(13;8.31e-06)|Lung NSC(96;0.000251)|Breast(56;0.0008)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;6.1e-09)		CAAGGAAGTCCAGGCCGAGAG	0.542			NA											39	26					6.97489e-18	1.16439e-17	0.004878	1	0
SETDB2	83852	broad.mit.edu	37	13	50064963	50064963	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:50064963T>A	uc001vcz.2	+	14	2865	c.1959T>A	c.(1957-1959)AGT>AGA	p.S653R	SETDB2_uc001vda.2_Missense_Mutation_p.S641R	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	653	SET.				cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		AACAGCATAGTTGTTGCCCAA	0.328			NA											8	8					0	0	0.004482	0	0
THSD1	55901	broad.mit.edu	37	13	52972231	52972231	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:52972231T>C	uc001vgo.2	-	3	702	c.157A>G	c.(157-159)AAT>GAT	p.N53D	THSD1_uc001vgp.2_Missense_Mutation_p.N53D|THSD1_uc010tgz.1_Intron|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	53	Extracellular (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		AGTGTCCCATTAGCACCATCA	0.473			NA											25	32					0	0	0.00278	0	0
PCDH8	5100	broad.mit.edu	37	13	53419026	53419026	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:53419026G>C	uc001vhi.2	-	3	3085	c.2882C>G	c.(2881-2883)TCT>TGT	p.S961C	PCDH8_uc001vhj.2_Missense_Mutation_p.S864C	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	961	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GCAGCGGTCAGAGTGGCCCAG	0.542	GBM(36;25 841 9273 49207)		NA											16	28					0	0	0.004007	0	0
PCDH17	27253	broad.mit.edu	37	13	58299198	58299198	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:58299198C>A	uc001vhq.1	+	4	4142	c.3250C>A	c.(3250-3252)CAA>AAA	p.Q1084K	PCDH17_uc010aec.1_Missense_Mutation_p.Q1083K|PCDH17_uc001vhr.1_Missense_Mutation_p.Q173K	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1084	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		ACCTAGTAAGCAACCAAGAGA	0.532	Melanoma(72;952 1291 1619 12849 33676)		NA											35	47					4.4194e-11	6.12182e-11	0.002836	1	0
DACH1	1602	broad.mit.edu	37	13	72204847	72204847	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:72204847G>T	uc010thn.1	-	4	1390	c.967C>A	c.(967-969)CTG>ATG	p.L323M	DACH1_uc010tho.1_Missense_Mutation_p.L323M|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	323	Interaction with SIX6 and HDAC3 (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		gctgcTGTCAGACCTTAAAAG	0.214			NA											20	28					8.34094e-07	9.91443e-07	0.008871	1	0
MYCBP2	23077	broad.mit.edu	37	13	77748563	77748563	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:77748563C>T	uc001vkf.2	-	38	5511	c.5420G>A	c.(5419-5421)GGA>GAA	p.G1807E	MYCBP2_uc010aev.2_Missense_Mutation_p.G1211E	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1807					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GGTCATTCCTCCATCTCCATT	0.438			NA											18	27					0	0	0.007413	0	0
SLITRK5	26050	broad.mit.edu	37	13	88327910	88327910	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:88327910C>G	uc001vln.2	+	2	486	c.267C>G	c.(265-267)TCC>TCG	p.S89S	SLITRK5_uc010tic.1_Intron	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	89	LRR 1.|Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					TCTTGTTGTCCGGAAACCTTT	0.458			NA											58	83					0	0	0.00361	0	0
SLITRK5	26050	broad.mit.edu	37	13	88329734	88329734	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:88329734C>A	uc001vln.2	+	2	2310	c.2091C>A	c.(2089-2091)AGC>AGA	p.S697R	SLITRK5_uc010tic.1_Missense_Mutation_p.S456R	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	697	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					AGAACCAGAGCGACCACACCA	0.612			NA											21	29					1.10513e-12	1.60419e-12	0.002299	1	0
HS6ST3	266722	broad.mit.edu	37	13	97485261	97485261	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:97485261G>A	uc001vmw.2	+	2	1249	c.1225G>A	c.(1225-1227)GAG>AAG	p.E409K		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	409	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					GCAGCTTTACGAGTATGCAAA	0.572			NA											24	45					0	0	0.00278	0	0
DOCK9	23348	broad.mit.edu	37	13	99505739	99505739	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:99505739C>A	uc001vnt.2	-	35	3927	c.3872G>T	c.(3871-3873)CGC>CTC	p.R1291L	DOCK9_uc001vnw.2_Missense_Mutation_p.R1290L|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.R1291L|DOCK9_uc010tip.1_5'UTR|DOCK9_uc010tiq.1_Missense_Mutation_p.R269L	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1291					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TTTATCACAGCGAACCACGGA	0.378			NA											62	84					6.05568e-20	1.05548e-19	0.00361	1	0
NALCN	259232	broad.mit.edu	37	13	102051436	102051437	+	Missense_Mutation	DNP	TG	TG	CT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:102051436_102051437TG>CT	uc001vox.1	-	2	230_231	c.41_42CA>AG	c.(40-42)CCA>CAG	p.P14Q	NALCN_uc001voy.2_5'UTR|NALCN_uc001voz.2_Missense_Mutation_p.P14Q|NALCN_uc001vpa.2_Missense_Mutation_p.P14Q	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	14	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGTCAGTGACTGGCTGGGCTTC	0.455			NA											13	24					0	0	0.004672	0	0
SLC10A2	6555	broad.mit.edu	37	13	103718339	103718339	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:103718339C>A	uc001vpy.3	-	1	858	c.261G>T	c.(259-261)TCG>TCT	p.S87S		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	87	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CAAAGGCCACCGACAGGATGA	0.522			NA											30	37					8.53417e-09	1.0812e-08	0.002836	1	0
DAOA	267012	broad.mit.edu	37	13	106124955	106124955	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:106124955G>T	uc001vqb.2	+	3	476	c.202G>T	c.(202-204)GGC>TGC	p.G68C	DAOA_uc010tjf.1_5'UTR|DAOA_uc001vpz.2_RNA|DAOA_uc010agd.2_RNA|DAOA_uc010tjg.1_Silent_p.T3T|DAOA_uc001vqc.2_RNA|DAOA_uc001vqe.2_RNA	NM_172370	NP_758958	P59103	DAOA_HUMAN	D-amino acid oxidase activator isoform 1	68						Golgi apparatus					0	Lung NSC(43;0.01)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					GCATGAGGACGGCTATTTGGA	0.413			NA											11	22					7.03913e-09	8.96576e-09	0.001368	1	0
COL4A2	1284	broad.mit.edu	37	13	111138059	111138059	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:111138059G>T	uc001vqx.2	+	34	3372	c.3083G>T	c.(3082-3084)AGG>ATG	p.R1028M		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1028	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CTGCCTGGGAGGCCCGGCCAC	0.627			NA											24	24					9.95505e-16	1.56641e-15	0.002299	1	0
RASA3	22821	broad.mit.edu	37	13	114817632	114817632	+	Splice_Site	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:114817632T>A	uc001vui.2	-	3	305	c.174_splice	c.e3-1	p.C58_splice	RASA3_uc010tkk.1_Splice_Site_p.C26_splice|RASA3_uc001vuj.2_Splice_Site|RASA3_uc010tkl.1_Splice_Site	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3						intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			TAAAACGGGCTAGTGAGACAA	0.483			NA											7	9					0	0	0.001984	0	0
OR4K15	81127	broad.mit.edu	37	14	20444383	20444383	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:20444383C>A	uc010tkx.1	+	1	706	c.706C>A	c.(706-708)CTC>ATC	p.L236I		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	236	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GAGTTCCTTTCTCCTCTTGGT	0.463			NA											34	51					3.86903e-22	6.95644e-22	0.002836	1	0
OR4K13	390433	broad.mit.edu	37	14	20502144	20502144	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:20502144G>T	uc010tkz.1	-	1	774	c.774C>A	c.(772-774)TAC>TAA	p.Y258*		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AGGGCCAGACGTAGATAAAGA	0.403			NA											12	19					3.07112e-06	3.59348e-06	0.000978	1	0
TMEM55B	90809	broad.mit.edu	37	14	20926740	20926740	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:20926740T>A	uc001vxl.2	-	7	965	c.812A>T	c.(811-813)CAC>CTC	p.H271L	TMEM55B_uc001vxk.2_Missense_Mutation_p.H278L	NM_144568	NP_653169	Q86T03	TM55B_HUMAN	transmembrane protein 55B isoform 2	271						integral to membrane|late endosome membrane|lysosomal membrane	hydrolase activity				0	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;1.09e-07)|all cancers(55;1.19e-06)	GBM - Glioblastoma multiforme(265;0.0224)|READ - Rectum adenocarcinoma(17;0.193)		CTGGACAGGGTGGCTGACCTT	0.572			NA											13	15					0	0	0.00245	0	0
MYH6	4624	broad.mit.edu	37	14	23868097	23868097	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:23868097G>A	uc001wjv.2	-	15	1798	c.1731C>T	c.(1729-1731)CAC>CAT	p.H577H		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	577	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TCAGGGAGAAGTGGGCTTCCT	0.542			NA											44	11					0	0	0.009718	0	0
FOXG1	2290	broad.mit.edu	37	14	29237535	29237535	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:29237535G>A	uc001wqe.2	+	1	1249	c.1050G>A	c.(1048-1050)CTG>CTA	p.L350L		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	350					axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		AGAACTCGCTGGGCAACAACC	0.667			NA											67	9					0	0	0.00361	0	0
SSTR1	6751	broad.mit.edu	37	14	38678810	38678810	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:38678810G>A	uc001wul.1	+	3	833	c.216G>A	c.(214-216)GGG>GGA	p.G72G	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	72	Helical; Name=1; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	GCCTGGTGGGGCTGTGTGGGA	0.567			NA											43	4					0	0	0.002522	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724269	38724269	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:38724269G>T	uc001wum.1	-	1	1306	c.959C>A	c.(958-960)CCA>CAA	p.P320Q		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	320	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GACCCTGATTGGCCATGTTCT	0.612			NA											60	11					7.73544e-29	1.51309e-28	0.00361	1	0
SAMD4A	23034	broad.mit.edu	37	14	55231218	55231218	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:55231218G>T	uc001xbb.2	+	7	1554	c.1553G>T	c.(1552-1554)AGT>ATT	p.S518I	SAMD4A_uc001xbc.2_Missense_Mutation_p.S430I|SAMD4A_uc001xbg.2_Missense_Mutation_p.S110I	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	519					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						GAAAATATAAGTTCCTATTTA	0.353			NA											110	18					4.50961e-65	9.67122e-65	0.00361	1	0
C14orf101	54916	broad.mit.edu	37	14	57078985	57078985	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:57078985G>T	uc001xcm.2	+	7	961	c.839G>T	c.(838-840)AGT>ATT	p.S280I	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xck.2_Missense_Mutation_p.S280I|C14orf101_uc010aot.1_Missense_Mutation_p.S280I|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_5'UTR	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	280						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		ATAGGATCCAGTATGTCTGAA	0.299			NA											46	4					1.47857e-17	2.44824e-17	0.00361	1	0
KCNH5	27133	broad.mit.edu	37	14	63447595	63447595	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:63447595C>G	uc001xfx.2	-	6	988	c.937G>C	c.(937-939)GAT>CAT	p.D313H	KCNH5_uc001xfy.2_Missense_Mutation_p.D313H|KCNH5_uc001xfz.1_Missense_Mutation_p.D255H|KCNH5_uc001xga.2_Missense_Mutation_p.D255H	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	313	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CTTACCTCATCCACATTTTCA	0.358			NA											20	2					0	0	0.002299	0	0
SYNE2	23224	broad.mit.edu	37	14	64447428	64447428	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:64447428T>A	uc001xgm.2	+	15	1856	c.1626T>A	c.(1624-1626)TGT>TGA	p.C542*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.C542*	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	542	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTCAAAAATGTGGAGAAATTT	0.289			NA											9	3					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	14	66479676	66479677	+	Nonsense_Mutation	DNP	GG	GG	TT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:66479676_66479677GG>TT	uc001xit.2	-	1	956_957	c.831_832CC>AA	c.(829-834)TACCGC>TAAAGC	p.277_278YR>*S						SubName: Full=Nuclease sensitive element binding protein-1;												NA						AAGTTGCGGCGGTACCGACGTT	0.525			NA											17	7					0	0	0.004672	0	0
C14orf43	91748	broad.mit.edu	37	14	74206148	74206148	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:74206148C>T	uc001xot.2	-	2	1347	c.564G>A	c.(562-564)CAG>CAA	p.Q188Q	C14orf43_uc001xou.2_Silent_p.Q188Q|C14orf43_uc010tud.1_Silent_p.Q188Q|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		CTACCTCCAGCTGCACCTTCT	0.607			NA											60	16					0	0	0.00361	0	0
CATSPERB	79820	broad.mit.edu	37	14	92136302	92136302	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:92136302G>T	uc001xzs.1	-	14	1283	c.1143C>A	c.(1141-1143)GCC>GCA	p.A381A	CATSPERB_uc010aub.1_5'UTR	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	381					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CAGAGGCAATGGCAGTTTTCC	0.368			NA											14	24					1.56452e-12	2.25723e-12	0.007413	1	0
C14orf48	256369	broad.mit.edu	37	14	94469586	94469586	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:94469586G>T	uc001ycg.1	+	5	789	c.183G>T	c.(181-183)CTG>CTT	p.L61L	C14orf48_uc001ycf.2_RNA|C14orf48_uc010twp.1_RNA	NR_024184				Homo sapiens cDNA FLJ40422 fis, clone TESTI2038858.												0				Epithelial(152;0.114)|all cancers(159;0.191)|COAD - Colon adenocarcinoma(157;0.208)		AGATCCGGCTGTGTCAGCTGC	0.562			NA											18	3					5.03518e-11	6.96126e-11	0.007413	1	0
RTL1	388015	broad.mit.edu	37	14	101350919	101350919	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:101350919C>T	uc010txj.1	-	1	266	c.207G>A	c.(205-207)CTG>CTA	p.L69L	uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	69										pancreas(1)	1						GATCAGTGGGCAGCTCTTCCA	0.607			NA											29	6					0	0	0.007291	0	0
DIO3	1735	broad.mit.edu	37	14	102028296	102028296	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:102028296G>T	uc010txq.1	+	1	609	c.385G>T	c.(385-387)GCG>TCG	p.A129S	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	129	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity	p.A129V(1)		ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				CCTCGACTACGCGCAAGGGAA	0.627			NA											33	5					3.86903e-22	6.95644e-22	0.002836	1	0
TECPR2	9895	broad.mit.edu	37	14	102874864	102874864	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:102874864A>G	uc001ylw.1	+	4	536	c.388A>G	c.(388-390)ATT>GTT	p.I130V	TECPR2_uc010txw.1_Missense_Mutation_p.I130V|TECPR2_uc010awl.2_Missense_Mutation_p.I130V|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	130	WD 2.						protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						CAAAAATAGCATTACAGCTCT	0.378			NA											70	8					0	0	0.00361	0	0
TECPR2	9895	broad.mit.edu	37	14	102918939	102918939	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:102918939G>T	uc001ylw.1	+	16	3763	c.3615G>T	c.(3613-3615)TGG>TGT	p.W1205C	TECPR2_uc010awl.2_Missense_Mutation_p.W1205C|TECPR2_uc010txx.1_Missense_Mutation_p.W368C	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	1205	TECPR 3.						protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GCATGCACTGGACCAGGCTGG	0.647			NA											14	1					7.93312e-07	9.43756e-07	0.00245	1	0
KLC1	3831	broad.mit.edu	37	14	104121095	104121095	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:104121095T>C	uc001yno.2	+	2	502	c.194T>C	c.(193-195)GTG>GCG	p.V65A	KLC1_uc010tyd.1_Missense_Mutation_p.V224A|KLC1_uc010tye.1_Missense_Mutation_p.V61A|KLC1_uc001ynm.1_Missense_Mutation_p.V65A|KLC1_uc001ynn.1_Missense_Mutation_p.V61A|KLC1_uc010tyf.1_Missense_Mutation_p.V65A	NM_182923	NP_891553	Q07866	KLC1_HUMAN	kinesin light chain 1 isoform 2	65					blood coagulation|microtubule-based movement|stress granule disassembly	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0		Melanoma(154;0.155)|all_epithelial(191;0.19)				AGTAATTTGGTGGAGGAGAAA	0.443			NA											8	28					0	0	0.00308	0	0
AHNAK2	113146	broad.mit.edu	37	14	105410035	105410035	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:105410035G>T	uc010axc.1	-	7	11873	c.11753C>A	c.(11752-11754)CCC>CAC	p.P3918H	AHNAK2_uc001ypx.2_Missense_Mutation_p.P3818H	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3918						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TTCCACCTTGGGGTCTTTTAG	0.602			NA											166	30					1.6305e-70	3.51793e-70	0.00361	1	0
OR4M2	390538	broad.mit.edu	37	15	22368844	22368844	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:22368844A>G	uc010tzu.1	+	1	269	c.269A>G	c.(268-270)AAG>AGG	p.K90R	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GTGGAGAGGAAGATAATTTCT	0.438			NA											57	288					0	0	0.00361	0	0
OR4N4	283694	broad.mit.edu	37	15	22382695	22382695	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:22382695T>C	uc001yuc.1	+	7	1204	c.223T>C	c.(223-225)TTC>CTC	p.F75L	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.F75L	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATCCTACTCCTTCATTGTGGC	0.473			NA											9	339					0	0	0.003954	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890725	23890725	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:23890725C>A	uc001ywj.3	-	1	451	c.356G>T	c.(355-357)AGG>ATG	p.R119M		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		AGAAGAGGCCCTGCATTCTCC	0.602			NA											6	12					0.000157383	0.000172794	0.00308	1	0
NDN	4692	broad.mit.edu	37	15	23932277	23932277	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:23932277C>A	uc001ywk.2	-	1	174	c.88G>T	c.(88-90)GAG>TAG	p.E30*		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	30					negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		GGAACCCCCTCCGAAACCCCA	0.682			NA							Prader-Willsyndrome				7	9					0.00307968	0.00324849	0.00308	1	0
C15orf2	23742	broad.mit.edu	37	15	24921513	24921513	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:24921513G>T	uc001ywo.2	+	1	973	c.499G>T	c.(499-501)GTG>TTG	p.V167L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	167					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGAGGATCCGGTGCAGATCGA	0.627			NA											11	21					1.08611e-07	1.32871e-07	0.000978	1	0
C15orf2	23742	broad.mit.edu	37	15	24922265	24922265	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:24922265T>A	uc001ywo.2	+	1	1725	c.1251T>A	c.(1249-1251)ACT>ACA	p.T417T		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	417	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCACTTACACTTCCCAGGTCT	0.552			NA											18	32					0	0	0.010504	0	0
C15orf2	23742	broad.mit.edu	37	15	24922352	24922352	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:24922352C>T	uc001ywo.2	+	1	1812	c.1338C>T	c.(1336-1338)ACC>ACT	p.T446T		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	446	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CACTTTCCACCACACCAAAAA	0.502			NA											24	42					0	0	0.00278	0	0
C15orf2	23742	broad.mit.edu	37	15	24922627	24922627	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:24922627C>A	uc001ywo.2	+	1	2087	c.1613C>A	c.(1612-1614)ACC>AAC	p.T538N		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	538					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GTCCCTTCCACCGGGACCTCA	0.527			NA											67	80					2.165e-29	4.25236e-29	0.00361	1	0
C15orf2	23742	broad.mit.edu	37	15	24924332	24924332	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:24924332C>A	uc001ywo.2	+	1	3792	c.3318C>A	c.(3316-3318)GGC>GGA	p.G1106G		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1106					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GAGGGGATGGCACCAGATCCA	0.488			NA											32	56					2.81731e-10	3.76347e-10	0.002096	1	0
OCA2	4948	broad.mit.edu	37	15	28096607	28096607	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:28096607C>A	uc001zbh.3	-	22	2369	c.2259G>T	c.(2257-2259)CTG>CTT	p.L753L	OCA2_uc010ayv.2_Silent_p.L729L	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	753	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GGCTCAGGTTCAGGAGCACGG	0.577			NA							Oculocutaneous_Albinism				3	11					0.004672	0.00490267	0.004672	1	0
OCA2	4948	broad.mit.edu	37	15	28211927	28211927	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:28211927C>A	uc001zbh.3	-	15	1655	c.1545G>T	c.(1543-1545)GGG>GGT	p.G515G	OCA2_uc010ayv.2_Silent_p.G491G	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	515	Helical; (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		CAAGGCAAATCCCAATGAACA	0.408			NA							Oculocutaneous_Albinism				8	10					5.4927e-09	7.02119e-09	0.004482	1	0
OCA2	4948	broad.mit.edu	37	15	28260048	28260048	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:28260048G>T	uc001zbh.3	-	9	1028	c.918C>A	c.(916-918)GCC>GCA	p.A306A	OCA2_uc010ayv.2_Silent_p.A306A	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	306	Extracellular (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GCTGCAGGGAGGCCCGGATGC	0.577			NA							Oculocutaneous_Albinism				8	16					5.18039e-06	6.01703e-06	0.00308	1	0
OCA2	4948	broad.mit.edu	37	15	28263615	28263615	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:28263615C>T	uc001zbh.3	-	7	845	c.735G>A	c.(733-735)GGG>GGA	p.G245G	OCA2_uc010ayv.2_Silent_p.G245G	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	245	Extracellular (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GCTCTTCCCTCCCAGGACGAC	0.612			NA							Oculocutaneous_Albinism				7	9					0	0	0.001984	0	0
HERC2	8924	broad.mit.edu	37	15	28538048	28538048	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:28538048C>A	uc001zbj.2	-	4	414	c.308G>T	c.(307-309)TGG>TTG	p.W103L	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	103					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TTGCTTGCCCCATACCCAGCT	0.393			NA											18	15					9.16793e-09	1.15737e-08	0.00499	1	0
TRPM1	4308	broad.mit.edu	37	15	31358394	31358394	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:31358394G>T	uc001zfm.2	-	6	737	c.609C>A	c.(607-609)AAC>AAA	p.N203K	TRPM1_uc010azy.2_Missense_Mutation_p.N116K|TRPM1_uc001zfl.2_RNA|uc010ubm.1_5'Flank|MIR211_hsa-mir-211|MI0000287_5'Flank	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	203	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		TGTGGGAGTTGTTGAGCACAG	0.542			NA											23	24					7.87624e-14	1.17689e-13	0.00278	1	0
OTUD7A	161725	broad.mit.edu	37	15	31779767	31779767	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:31779767C>T	uc001zfq.2	-	9	1246	c.1153G>A	c.(1153-1155)GTG>ATG	p.V385M	OTUD7A_uc001zfr.2_Missense_Mutation_p.V392M	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	385	Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		AGGGGGATCACGGCTGGAACA	0.587			NA											15	4					0	0	0.003163	0	0
RYR3	6263	broad.mit.edu	37	15	33939623	33939623	+	Splice_Site	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:33939623A>T	uc001zhi.2	+	30	4012	c.3942_splice	c.e30-2	p.R1314_splice	RYR3_uc010bar.2_Splice_Site_p.R1314_splice	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3						cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCTTTCCCCCAGGAAACAGAT	0.358			NA											14	17					0	0	0.003163	0	0
C15orf29	79768	broad.mit.edu	37	15	34446862	34446862	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:34446862C>A	uc001zhp.2	-	3	301	c.141G>T	c.(139-141)TTG>TTT	p.L47F	C15orf29_uc010ubz.1_5'UTR|C15orf29_uc010uca.1_Missense_Mutation_p.L47F	NM_024713	NP_078989	Q9H079	CO029_HUMAN	hypothetical protein LOC79768	47						nucleolus				ovary(1)	1		all_lung(180;1.86e-06)		all cancers(64;5.49e-18)|GBM - Glioblastoma multiforme(113;8.91e-07)|BRCA - Breast invasive adenocarcinoma(123;0.026)|Lung(196;0.229)		TGTAAGCAGCCAACTGTTTTG	0.269			NA											7	16					0.00198382	0.00209878	0.001984	1	0
GOLGA8B	440270	broad.mit.edu	37	15	34825090	34825090	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:34825090C>T	uc001ziq.2	-	3	351	c.242G>A	c.(241-243)AGG>AAG	p.R81K	GOLGA8B_uc010ucf.1_5'UTR|GOLGA8B_uc001zip.2_5'UTR	NM_001023567	NP_001018861	A8MQT2	GOG8B_HUMAN	golgi autoantigen, golgin subfamily a, 8B	81						Golgi cisterna membrane					0		all_lung(180;2.78e-08)		all cancers(64;8.27e-19)|GBM - Glioblastoma multiforme(113;6.98e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		TTTTATGGACCTCGAGTTCAG	0.557			NA											18	91					0	0	0.001882	0	0
THBS1	7057	broad.mit.edu	37	15	39883723	39883723	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:39883723G>A	uc001zkh.2	+	16	2610	c.2431G>A	c.(2431-2433)GAC>AAC	p.D811N	THBS1_uc010bbi.2_Missense_Mutation_p.D283N	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	811	TSP type-3 4.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CAATGAACGGGACAACTGCCA	0.483			NA											12	43					0	0	0.000978	0	0
INO80	54617	broad.mit.edu	37	15	41347448	41347448	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:41347448C>A	uc001zni.2	-	18	2398	c.2185G>T	c.(2185-2187)GAG>TAG	p.E729*	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	729	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						TACTCACTCTCATCAATAGCA	0.348			NA											9	12					4.68919e-08	5.81656e-08	0.008291	1	0
PLA2G4F	255189	broad.mit.edu	37	15	42436328	42436328	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:42436328C>T	uc001zoz.2	-	18	2053	c.1990G>A	c.(1990-1992)GCC>ACC	p.A664T	PLA2G4F_uc010bcq.2_Intron|PLA2G4F_uc001zoy.2_Missense_Mutation_p.A296T|PLA2G4F_uc010bcr.2_Missense_Mutation_p.A415T|PLA2G4F_uc001zpa.2_Missense_Mutation_p.A415T|PLA2G4F_uc010bcs.2_Missense_Mutation_p.A451T	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	664	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		TTGGGGAAGGCGTCCGGGTGT	0.572			NA											17	24					0	0	0.008871	0	0
TGM7	116179	broad.mit.edu	37	15	43577146	43577146	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:43577146C>G	uc001zrf.1	-	7	875	c.870G>C	c.(868-870)ATG>ATC	p.M290I		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	290					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CTAAGCATCTCATTACTAAAG	0.413			NA											15	16					0	0	0.00245	0	0
MAP1A	4130	broad.mit.edu	37	15	43815578	43815578	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:43815578A>G	uc001zrt.2	+	4	2374	c.1907A>G	c.(1906-1908)GAC>GGC	p.D636G		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	636						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AGGCTCCCAGACAGAACAGAA	0.498			NA											2	7					0	0	0.004672	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43851102	43851102	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:43851102G>A	uc001zrw.2	-	29	3459	c.3276C>T	c.(3274-3276)ACC>ACT	p.T1092T	PPIP5K1_uc001zrx.1_Silent_p.T1025T|PPIP5K1_uc001zru.2_Silent_p.T1067T|PPIP5K1_uc001zry.3_Silent_p.T1067T|PPIP5K1_uc001zrv.2_Silent_p.T987T	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1092					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						GAGGGTAGATGGTAGGCACCA	0.507			NA											27	44					0	0	0.00632	0	0
SPG11	80208	broad.mit.edu	37	15	44876469	44876469	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:44876469C>G	uc001ztx.2	-	30	5440	c.5409G>C	c.(5407-5409)CTG>CTC	p.L1803L	SPG11_uc010bdw.2_Silent_p.L92L|SPG11_uc010ueh.1_Silent_p.L1803L|SPG11_uc010uei.1_Silent_p.L1803L|SPG11_uc001zty.1_Silent_p.L532L	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1803	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		TGATGCGGCACAGCCAGATCT	0.542			NA											17	20					0	0	0.00499	0	0
DUOXA1	90527	broad.mit.edu	37	15	45411404	45411404	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:45411404G>A	uc001zuq.1	-	6	961	c.932C>T	c.(931-933)GCT>GTT	p.A311V	DUOXA1_uc010uem.1_Missense_Mutation_p.A266V|DUOXA1_uc001zup.2_Missense_Mutation_p.A311V|DUOXA1_uc010bec.2_Missense_Mutation_p.A311V|DUOXA1_uc001zur.1_Missense_Mutation_p.A266V|DUOXA1_uc010bed.1_Missense_Mutation_p.A266V	NM_144565	NP_653166	Q1HG43	DOXA1_HUMAN	Numb-interacting protein	311	Cytoplasmic (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		all_cancers(109;6.02e-08)|all_epithelial(112;1.83e-06)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.82e-18)|GBM - Glioblastoma multiforme(94;4.39e-07)|COAD - Colon adenocarcinoma(120;0.0676)|Colorectal(133;0.0686)		GGGACTGTCAGCCATGGACCG	0.552			NA											37	38					0	0	0.00623	0	0
SEMA6D	80031	broad.mit.edu	37	15	48063806	48063806	+	Missense_Mutation	SNP	C	C	A	rs34884840	byFrequency	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:48063806C>A	uc010bek.2	+	19	3406	c.3046C>A	c.(3046-3048)CCA>ACA	p.P1016T	SEMA6D_uc001zvw.2_Missense_Mutation_p.P954T|SEMA6D_uc001zvy.2_Missense_Mutation_p.P1016T|SEMA6D_uc001zvz.2_Missense_Mutation_p.P960T|SEMA6D_uc001zwa.2_3'UTR|SEMA6D_uc001zwb.2_Missense_Mutation_p.P954T|SEMA6D_uc001zwc.2_Missense_Mutation_p.P941T	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	1016	Cytoplasmic (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		TCAGGGAACACCAGTGAGTGT	0.517			NA											55	53					1.51943e-15	2.37765e-15	0.00361	1	0
C15orf33	196951	broad.mit.edu	37	15	49800546	49800546	+	Splice_Site	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:49800546C>T	uc001zxl.2	-	11	1169	c.875_splice	c.e11-1	p.G292_splice	C15orf33_uc001zxm.2_Splice_Site_p.G258_splice	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951											ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		GGTTTTAAACCTGTTAATATA	0.299			NA											14	31					0	0	0.003163	0	0
TMOD3	29766	broad.mit.edu	37	15	52192420	52192420	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:52192420G>A	uc002abm.2	+	8	1023	c.804G>A	c.(802-804)ACG>ACA	p.T268T	TMOD3_uc010bfc.1_RNA	NM_014547	NP_055362	Q9NYL9	TMOD3_HUMAN	tropomodulin 3 (ubiquitous)	268						cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(1)	1				all cancers(107;0.00194)		ACTTTATCACGGGAGTTGGGA	0.368	Colon(122;1837 2251 18387 22826)		NA											7	18					0	0	0.001984	0	0
GCOM1	145781	broad.mit.edu	37	15	57910261	57910261	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:57910261A>G	uc002aei.2	+	3	312	c.193A>G	c.(193-195)AGG>GGG	p.R65G	GCOM1_uc002aej.2_Missense_Mutation_p.R65G|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.R65G|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.R65G|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	65					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						AGAACCTACCAGGAAACTTCC	0.408			NA											12	24					0	0	0.001855	0	0
MYO1E	4643	broad.mit.edu	37	15	59523934	59523934	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:59523934G>A	uc002aga.2	-	6	849	c.477C>T	c.(475-477)GCC>GCT	p.A159A		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	159	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		GGACGGTCTTGGCGTTCCCGA	0.522			NA											25	37					0	0	0.00632	0	0
VPS13C	54832	broad.mit.edu	37	15	62283946	62283946	+	Missense_Mutation	SNP	C	C	A	rs142155201		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:62283946C>A	uc002agz.2	-	17	1483	c.1409G>T	c.(1408-1410)CGT>CTT	p.R470L	VPS13C_uc002aha.2_Missense_Mutation_p.R427L|VPS13C_uc002ahb.1_Missense_Mutation_p.R470L|VPS13C_uc002ahc.1_Missense_Mutation_p.R427L	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	470					protein localization					ovary(2)	2						CCAGCCTCCACGTTTCTCGCC	0.368			NA											60	47					1.14856e-27	2.22828e-27	0.00361	1	0
TLN2	83660	broad.mit.edu	37	15	63058585	63058585	+	Silent	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:63058585A>T	uc002alb.3	+	38	5160	c.5160A>T	c.(5158-5160)ACA>ACT	p.T1720T	TLN2_uc002alc.3_Silent_p.T113T|TLN2_uc002ald.2_Silent_p.T113T	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1720					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						CCATCGCCACAGCGGCTCGGG	0.547			NA											18	29					0	0	0.002299	0	0
CSNK1G1	53944	broad.mit.edu	37	15	64499794	64499794	+	Splice_Site	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:64499794C>T	uc002anf.2	-	7	1160	c.680_splice	c.e7-1	p.E227_splice	CSNK1G1_uc002ane.2_Splice_Site|CSNK1G1_uc002ang.1_Splice_Site_p.E227_splice|CSNK1G1_uc002anh.1_Splice_Site_p.E227_splice|CSNK1G1_uc002anj.2_Splice_Site_p.E209_splice	NM_022048	NP_071331	Q9HCP0	KC1G1_HUMAN	casein kinase 1, gamma 1						Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity				0						CGGCTTTGCTCTAAAAGGGAA	0.453			NA											11	16					0	0	0.008291	0	0
IGDCC3	9543	broad.mit.edu	37	15	65667730	65667730	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:65667730G>T	uc002aos.2	-	2	366	c.114C>A	c.(112-114)CAC>CAA	p.H38Q		NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	38	Extracellular (Potential).|Ig-like C2-type 1.									ovary(3)	3						GTTCAGCAGAGTGGCCAAGAC	0.552			NA											7	4					1.06961e-07	1.31304e-07	0.00308	1	0
DENND4A	10260	broad.mit.edu	37	15	65993503	65993503	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:65993503T>C	uc002aph.2	-	19	2965	c.2587A>G	c.(2587-2589)AGA>GGA	p.R863G	DENND4A_uc002api.2_Missense_Mutation_p.R863G|DENND4A_uc002apj.3_Missense_Mutation_p.R863G	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	863					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CTACGACTTCTTGAAGGCCAG	0.294			NA											7	11					0	0	0.004482	0	0
CLN6	54982	broad.mit.edu	37	15	68504016	68504016	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:68504016C>A	uc002arf.2	-	4	641	c.483G>T	c.(481-483)ACG>ACT	p.T161T	CLN6_uc010ujy.1_Intron|CLN6_uc010ujz.1_Silent_p.T193T	NM_017882	NP_060352	Q9NWW5	CLN6_HUMAN	CLN6 protein	161					cell death|cholesterol metabolic process|ganglioside metabolic process|glycosaminoglycan metabolic process|lysosomal lumen acidification|positive regulation of proteolysis|protein catabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	protein homodimerization activity				0						GCCTCACCAGCGTCTCCGGCT	0.612			NA											50	72					5.57489e-27	1.06846e-26	0.00361	1	0
RPLP1	6176	broad.mit.edu	37	15	69747561	69747561	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:69747561G>T	uc002asd.1	+	3	329	c.200G>T	c.(199-201)GGA>GTA	p.G67V	RPLP1_uc002ase.1_Missense_Mutation_p.G42V	NM_001003	NP_000994	P05386	RLA1_HUMAN	ribosomal protein P1 isoform 1	67					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0						GGGGCCGGTGGACCTGCTCCA	0.562			NA											21	27					1.64113e-05	1.86809e-05	0.010504	1	0
MYO9A	4649	broad.mit.edu	37	15	72195371	72195371	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:72195371G>A	uc002atl.3	-	22	3384	c.2911C>T	c.(2911-2913)CGA>TGA	p.R971*	MYO9A_uc010biq.2_Nonsense_Mutation_p.R591*|MYO9A_uc002atn.1_Nonsense_Mutation_p.R952*	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	971	Myosin head-like 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						ATAATATTTCGGGGAAGAAGT	0.274			NA											5	20					0	0	0.001168	0	0
ARIH1	25820	broad.mit.edu	37	15	72873134	72873134	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:72873134G>T	uc002aut.3	+	12	1592	c.1278G>T	c.(1276-1278)CAG>CAT	p.Q426H		NM_005744	NP_005735	Q9Y4X5	ARI1_HUMAN	ariadne ubiquitin-conjugating enzyme E2 binding	426					ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding				0						ACCACATGCAGAGCCTGCGCT	0.453			NA											9	23					0.00448238	0.00472109	0.004482	1	0
HCN4	10021	broad.mit.edu	37	15	73616435	73616435	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:73616435C>T	uc002avp.2	-	7	3132	c.2138G>A	c.(2137-2139)CGC>CAC	p.R713H		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	713	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		CTCACCAATGCGGTCCAGGCG	0.652			NA											19	27					0	0	0.006122	0	0
HCN4	10021	broad.mit.edu	37	15	73616437	73616437	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:73616437G>T	uc002avp.2	-	7	3130	c.2136C>A	c.(2134-2136)GAC>GAA	p.D712E		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	712	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		CACCAATGCGGTCCAGGCGGT	0.652			NA											19	29					6.94344e-10	9.1297e-10	0.006122	1	0
UBE2Q2	92912	broad.mit.edu	37	15	76152291	76152291	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:76152291G>C	uc002bbg.2	+	3	741	c.355G>C	c.(355-357)GAG>CAG	p.E119Q	UBE2Q2_uc002bbh.2_Intron|UBE2Q2_uc010umn.1_Missense_Mutation_p.E103Q|UBE2Q2_uc002bbi.2_5'UTR	NM_173469	NP_775740	Q8WVN8	UB2Q2_HUMAN	ubiquitin-conjugating enzyme E2Q 2 isoform 1	119					protein K48-linked ubiquitination	cytoplasm	ATP binding|ubiquitin-protein ligase activity			ovary(2)	2						CCTGGATGTTGAGATGCTAGA	0.378			NA											9	16					0	0	0.008291	0	0
SGK269	79834	broad.mit.edu	37	15	77406890	77406890	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:77406890C>A	uc002bcm.2	-	6	5157	c.4849G>T	c.(4849-4851)GAG>TAG	p.E1617*		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1617	Protein kinase.				cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TATTCCCTCTCCTTCAGCTCT	0.562			NA											9	12					7.48243e-07	8.9163e-07	0.006214	1	0
TBC1D2B	23102	broad.mit.edu	37	15	78316866	78316866	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:78316866G>A	uc002bcy.3	-	6	1102	c.1102C>T	c.(1102-1104)CTC>TTC	p.L368F	TBC1D2B_uc010bla.2_Missense_Mutation_p.L368F	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	368	Potential.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						GTCTGCTGGAGCAGTCGAACA	0.507			NA											20	19					0	0	0.007413	0	0
WDR61	80349	broad.mit.edu	37	15	78585583	78585583	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:78585583C>A	uc002bdn.2	-	4	148	c.72G>T	c.(70-72)TGG>TGT	p.W24C	WDR61_uc002bdo.2_Missense_Mutation_p.W24C|WDR61_uc010umz.1_RNA|WDR61_uc010una.1_Missense_Mutation_p.W24C	NM_025234	NP_079510	Q9GZS3	WDR61_HUMAN	WD repeat domain 61	24	WD 1.						protein binding			ovary(1)|skin(1)	2						TGTTTGTCCCCCAAGCAACTG	0.458			NA											21	54					1.00905e-13	1.49675e-13	0.008871	1	0
ADAMTS7	11173	broad.mit.edu	37	15	79058984	79058984	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:79058984C>T	uc002bej.3	-	19	3480	c.3269G>A	c.(3268-3270)GGG>GAG	p.G1090E	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1090					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GTCCCCTGTCCCCGCCAGGTC	0.627			NA											11	16					0	0	0.000978	0	0
TMED3	23423	broad.mit.edu	37	15	79614395	79614395	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:79614395G>T	uc002beu.2	+	3	594	c.493G>T	c.(493-495)GAG>TAG	p.E165*	TMED3_uc010unj.1_Intron|TMED3_uc002bev.2_RNA	NM_007364	NP_031390	Q9Y3Q3	TMED3_HUMAN	transmembrane emp24 domain containing 3	165	Lumenal (Potential).				protein transport	ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane				ovary(1)|skin(1)	2						CCGGCTGCGGGAGGCCCAGGA	0.577			NA											19	35					6.94344e-10	9.1297e-10	0.006122	1	0
FAH	2184	broad.mit.edu	37	15	80460463	80460463	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:80460463G>A	uc002bfj.2	+	7	607	c.525G>A	c.(523-525)AGG>AGA	p.R175R	FAH_uc002bfk.1_Silent_p.R175R|FAH_uc002bfm.1_Silent_p.R175R|FAH_uc002bfn.1_Silent_p.R105R	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	175					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						CAATCCGAAGGCCCATGGGAC	0.587			NA							Tyrosinemia_type_1				14	14					0	0	0.00245	0	0
IL16	3603	broad.mit.edu	37	15	81598783	81598783	+	Silent	SNP	G	G	A	rs145510224		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:81598783G>A	uc002bgh.3	+	18	4078	c.3702G>A	c.(3700-3702)ACG>ACA	p.T1234T	IL16_uc010blq.1_Silent_p.T1188T|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Silent_p.T1275T|IL16_uc002bgg.2_Silent_p.T1233T|IL16_uc002bgi.1_Silent_p.T623T|IL16_uc002bgj.2_Silent_p.T727T|IL16_uc002bgk.2_Silent_p.T533T|IL16_uc002bgl.1_Silent_p.T533T|IL16_uc010unq.1_Silent_p.T532T	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	1234	PDZ 4.				immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						CAGTCTGCACGGTGACACTGG	0.572			NA											54	72					0	0	0.00361	0	0
EFTUD1	79631	broad.mit.edu	37	15	82422771	82422771	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:82422771C>A	uc002bgt.1	-	20	3475	c.3306G>T	c.(3304-3306)GTG>GTT	p.V1102V	EFTUD1_uc002bgs.1_Silent_p.V473V|EFTUD1_uc002bgu.1_Silent_p.V1051V	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	1102					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TCTTTTCTTCCACATAAAGCC	0.443			NA											28	26					4.22769e-11	5.86768e-11	0.00632	1	0
ADAMTSL3	57188	broad.mit.edu	37	15	84442319	84442319	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:84442319G>A	uc002bjz.3	+	4	458	c.234G>A	c.(232-234)TGG>TGA	p.W78*	ADAMTSL3_uc002bjy.1_Nonsense_Mutation_p.W78*|ADAMTSL3_uc010bmt.1_Nonsense_Mutation_p.W78*|ADAMTSL3_uc010bmu.1_Nonsense_Mutation_p.W78*	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	78	TSP type-1 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			ATGGCAACTGGGATGCTTGGG	0.458			NA											17	22					0	0	0.007413	0	0
NTRK3	4916	broad.mit.edu	37	15	88576188	88576188	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:88576188A>C	uc002bme.1	-	13	1647	c.1485T>G	c.(1483-1485)GAT>GAG	p.D495E	NTRK3_uc002bmh.2_Missense_Mutation_p.D487E|NTRK3_uc002bmf.1_Missense_Mutation_p.D495E|NTRK3_uc010upl.1_Missense_Mutation_p.D397E|NTRK3_uc010bnh.1_Missense_Mutation_p.D487E|NTRK3_uc002bmg.2_Missense_Mutation_p.D495E|NTRK3_uc010bni.2_RNA	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	495	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CGGGCCCGGCATCCAGTGACG	0.607			NA	T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			11	13					0	0	0.001368	0	0
ISG20	3669	broad.mit.edu	37	15	89198669	89198669	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:89198669G>T	uc002bmv.1	+	4	746	c.453G>T	c.(451-453)TCG>TCT	p.S151S	ISG20_uc002bmu.1_RNA|ISG20_uc002bmw.1_RNA|ISG20_uc010upn.1_RNA	NM_002201	NP_002192	Q96AZ6	ISG20_HUMAN	interferon stimulated exonuclease	151					cell proliferation|DNA catabolic process, exonucleolytic|response to virus|RNA catabolic process|type I interferon-mediated signaling pathway	PML body	3'-5'-exoribonuclease activity|exoribonuclease II activity|metal ion binding|RNA binding|single-stranded DNA specific 3'-5' exodeoxyribonuclease activity				0	Lung NSC(78;0.0554)|all_lung(78;0.103)		BRCA - Breast invasive adenocarcinoma(143;0.12)			GACACAGCTCGGTGGAAGATG	0.592			NA											20	21					8.10497e-08	9.99262e-08	0.010504	1	0
ACAN	176	broad.mit.edu	37	15	89398775	89398775	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:89398775C>A	uc010upo.1	+	12	3333	c.2959C>A	c.(2959-2961)CCT>ACT	p.P987T	ACAN_uc010upp.1_Missense_Mutation_p.P987T|ACAN_uc002bna.2_Intron	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	987					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GACCACTGCCCCTGGAGTAGA	0.542			NA											52	88					7.05995e-25	1.32107e-24	0.00361	1	0
TMEM8A	58986	broad.mit.edu	37	16	424377	424377	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:424377C>A	uc002cgu.3	-	10	1728	c.1599G>T	c.(1597-1599)ACG>ACT	p.T533T	TMEM8A_uc002cgv.3_Silent_p.T340T	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	533	EGF-like.|Extracellular (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						TGCTGTTGTCCGTGCAGCTCC	0.682			NA									OREG0003702	type=REGULATORY REGION|Gene=TMEM8|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	10	23					0.000442599	0.000474237	0.006214	1	0
PKD1	5310	broad.mit.edu	37	16	2156625	2156625	+	Silent	SNP	G	G	A	rs147694938		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:2156625G>A	uc002cos.1	-	18	7472	c.7263C>T	c.(7261-7263)ACC>ACT	p.T2421T	PKD1_uc002cot.1_Silent_p.T2421T|PKD1_uc010bse.1_5'Flank	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2421	Extracellular (Potential).|REJ.		Missing (in ADPKD1).		calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CCGTGGATGTGGTGGTCTCAT	0.672			NA											6	13					0	0	0.001984	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3140419	3140419	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:3140419G>T	uc002ctv.1	-	5	939	c.851C>A	c.(850-852)CCC>CAC	p.P284H	ZSCAN10_uc002cty.1_5'UTR|ZSCAN10_uc002ctw.1_Missense_Mutation_p.P202H|ZSCAN10_uc002ctx.1_Missense_Mutation_p.P212H	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	284					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						ATTGGGCTCGGGGACGCCCTC	0.657			NA											32	44					2.48696e-23	4.55782e-23	0.003271	1	0
A2BP1	54715	broad.mit.edu	37	16	7657325	7657325	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:7657325C>A	uc002cys.2	+	10	1649	c.661C>A	c.(661-663)CCC>ACC	p.P221T	A2BP1_uc010buf.1_Missense_Mutation_p.P221T|A2BP1_uc002cyr.1_Missense_Mutation_p.P220T|A2BP1_uc002cyt.2_Missense_Mutation_p.P221T|A2BP1_uc010uxz.1_Missense_Mutation_p.P264T|A2BP1_uc010uya.1_Missense_Mutation_p.P178T|A2BP1_uc002cyv.1_Missense_Mutation_p.P221T|A2BP1_uc010uyb.1_Missense_Mutation_p.P221T|A2BP1_uc002cyw.2_Missense_Mutation_p.P241T|A2BP1_uc002cyy.2_Missense_Mutation_p.P241T|A2BP1_uc002cyx.2_Missense_Mutation_p.P241T|A2BP1_uc010uyc.1_Missense_Mutation_p.P241T	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	221					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AGTCTACAGTCCCGAATTCTA	0.348			NA											22	32					4.72057e-08	5.8453e-08	0.003954	1	0
GRIN2A	2903	broad.mit.edu	37	16	9943701	9943701	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:9943701C>T	uc002czo.3	-	5	1788	c.1240G>A	c.(1240-1242)GCC>ACC	p.A414T	GRIN2A_uc010uym.1_Missense_Mutation_p.A414T|GRIN2A_uc010uyn.1_Missense_Mutation_p.A257T|GRIN2A_uc002czr.3_Missense_Mutation_p.A414T	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	414	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACGAATGGGGCCTCCTCCAGG	0.582			NA											6	52					0	0	0.001168	0	0
NPIP	9284	broad.mit.edu	37	16	15045757	15045757	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:15045757G>T	uc002dcy.3	+	8	928	c.928G>T	c.(928-930)GAG>TAG	p.E310*	NPIP_uc002dcx.3_RNA	NM_006985	NP_008916	Q9UND3	NPIP_HUMAN	nuclear pore complex interacting protein	310	Pro-rich.				mRNA transport|protein transport|transmembrane transport	nuclear membrane|nuclear pore					0						GACACCTCCCGAGTGTCTGCT	0.557			NA											14	32					7.45023e-12	1.05458e-11	0.010504	1	0
C16orf62	57020	broad.mit.edu	37	16	19584460	19584460	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:19584460G>A	uc002dgn.1	+	4	317	c.305G>A	c.(304-306)CGT>CAT	p.R102H	C16orf62_uc002dgo.1_Missense_Mutation_p.R102H|C16orf62_uc010vas.1_Translation_Start_Site|C16orf62_uc002dgm.1_Missense_Mutation_p.R102H	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	102						integral to membrane				ovary(1)	1						AGAAGGAAACGTGATAGAGAT	0.403			NA											32	38					0	0	0.002836	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883423	19883423	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:19883423C>T	uc002dgt.2	-	2	853	c.745G>A	c.(745-747)GCC>ACC	p.A249T	GPRC5B_uc010vav.1_Missense_Mutation_p.A275T	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	249	Helical; Name=6; (Potential).									lung(1)|breast(1)|skin(1)	3						GTCATCCAGGCCACCCAGATG	0.622			NA											9	30					0	0	0.004482	0	0
GPR139	124274	broad.mit.edu	37	16	20043302	20043302	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:20043302G>T	uc002dgu.1	-	2	979	c.817C>A	c.(817-819)CTA>ATA	p.L273I	GPR139_uc010vaw.1_Missense_Mutation_p.L180I	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	273	Helical; Name=7; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						AGAAGGGCTAGCATGTTGGCA	0.547			NA											27	37					2.27525e-19	3.91773e-19	0.003954	1	0
GP2	2813	broad.mit.edu	37	16	20335515	20335515	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:20335515G>T	uc002dgv.2	-	3	241	c.158C>A	c.(157-159)ACC>AAC	p.T53N	GP2_uc002dgw.2_Missense_Mutation_p.T53N|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	53						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						AGCCTCTGGGGTGCCAGGAGC	0.557			NA											16	30					1.99824e-07	2.41963e-07	0.00499	1	0
PDILT	204474	broad.mit.edu	37	16	20386194	20386194	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:20386194C>T	uc002dhc.1	-	5	854	c.631G>A	c.(631-633)GTC>ATC	p.V211I		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	211					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						CGCCCAATGACATTGCCAATC	0.428			NA											29	48					0	0	0.008361	0	0
DNAH3	55567	broad.mit.edu	37	16	20996710	20996710	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:20996710C>A	uc010vbe.1	-	48	7354	c.7354G>T	c.(7354-7356)GCA>TCA	p.A2452S	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2452	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGCTCGTATGCGTTCATGAAT	0.547			NA											9	14					0.000274275	0.000296559	0.004482	1	0
ERN2	10595	broad.mit.edu	37	16	23718351	23718351	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:23718351C>A	uc002dma.3	-	5	669	c.500G>T	c.(499-501)AGC>ATC	p.S167I	ERN2_uc010bxp.2_Missense_Mutation_p.S167I|ERN2_uc010bxq.1_5'UTR	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	119	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		CCCATCAGAGCTGCGGCAGGG	0.542			NA											14	15					2.31682e-05	2.61838e-05	0.003163	1	0
PRKCB	5579	broad.mit.edu	37	16	24196448	24196448	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:24196448C>A	uc002dmd.2	+	14	1747	c.1550C>A	c.(1549-1551)CCC>CAC	p.P517H	PRKCB_uc002dme.2_Missense_Mutation_p.P517H	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	517	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GCTTATCAGCCCTATGGGAAG	0.428			NA											26	44					1.42536e-11	2.00564e-11	0.004656	1	0
AQP8	343	broad.mit.edu	37	16	25235842	25235842	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:25235842G>T	uc002doc.2	+	4	629	c.547G>T	c.(547-549)GGC>TGC	p.G183C		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	183	Cytoplasmic (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		GAAGACAAAGGGCCCTCTGGC	0.622			NA											11	19					0.000978159	0.0010387	0.000978	1	0
GTF3C1	2975	broad.mit.edu	37	16	27480842	27480842	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:27480842T>A	uc002dov.1	-	32	4884	c.4844A>T	c.(4843-4845)GAC>GTC	p.D1615V	GTF3C1_uc002dou.2_Missense_Mutation_p.D1615V	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1615	Asp/Glu-rich (acidic).					transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TTCATCCTCGTCATCCTCCAG	0.587			NA											34	35					0	0	0.004289	0	0
XPO6	23214	broad.mit.edu	37	16	28164033	28164033	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:28164033G>A	uc002dpa.1	-	8	1672	c.1171C>T	c.(1171-1173)CAG>TAG	p.Q391*	XPO6_uc002dpb.1_Nonsense_Mutation_p.Q377*|XPO6_uc010vcp.1_Nonsense_Mutation_p.Q391*	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	391					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						ACAGGGAACTGGGAGTAAGAC	0.403			NA											10	24					0	0	0.008291	0	0
SRCAP	10847	broad.mit.edu	37	16	30718950	30718950	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:30718950C>T	uc002dze.1	+	6	935	c.550C>T	c.(550-552)CGG>TGG	p.R184W	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.R41W|SRCAP_uc010bzz.1_5'Flank|SNORA30_uc002dzh.1_5'Flank	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	184	HSA.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GGAACGGGCCCGGAGGGAGGA	0.587			NA											15	21					0	0	0.003163	0	0
ITGAM	3684	broad.mit.edu	37	16	31340583	31340583	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:31340583G>T	uc002ebq.2	+	24	2925	c.2827G>T	c.(2827-2829)GCC>TCC	p.A943S	ITGAM_uc002ebr.2_Missense_Mutation_p.A944S|ITGAM_uc010can.2_Missense_Mutation_p.A349S	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	943	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CAACTTCACGGCCTCAGAGAA	0.547			NA											7	6					2.0095e-06	2.3649e-06	0.001984	1	0
ABCC11	85320	broad.mit.edu	37	16	48209260	48209260	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:48209260C>T	uc002eff.1	-	25	3957	c.3607G>A	c.(3607-3609)GGC>AGC	p.G1203S	ABCC11_uc002efg.1_Missense_Mutation_p.G1203S|ABCC11_uc002efh.1_Missense_Mutation_p.G1203S|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1203	ABC transporter 2.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				ATGTCCACGCCGTCAATGAGA	0.597			NA							Cerumen_Type				16	26					0	0	0.00499	0	0
ZNF423	23090	broad.mit.edu	37	16	49671762	49671762	+	Missense_Mutation	SNP	G	G	T	rs142517429	byFrequency	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:49671762G>T	uc002efs.2	-	5	1599	c.1301C>A	c.(1300-1302)GCG>GAG	p.A434E	ZNF423_uc010vgn.1_Missense_Mutation_p.A317E	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	434					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GGGCTTGTCCGCGTGGATGGT	0.582			NA											22	34					4.72057e-08	5.8453e-08	0.003954	1	0
FTO	79068	broad.mit.edu	37	16	53859963	53859963	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:53859963G>T	uc002ehr.2	+	3	533	c.311G>T	c.(310-312)TGC>TTC	p.C104F	FTO_uc010vha.1_Intron	NM_001080432	NP_001073901	Q9C0B1	FTO_HUMAN	fat mass and obesity associated	104	Fe2OG dioxygenase domain.				DNA dealkylation involved in DNA repair|oxidative single-stranded DNA demethylation|oxidative single-stranded RNA demethylation|RNA repair	nucleus	DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidative DNA demethylase activity|oxidative RNA demethylase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						AATCCAGGCTGCACCTACAAG	0.512			NA											20	32					6.33239e-15	9.67523e-15	0.010504	1	0
OGFOD1	55239	broad.mit.edu	37	16	56485445	56485445	+	Translation_Start_Site	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:56485445G>T	uc002ejb.2	+	1	22	c.-79G>T	c.(-81--77)AAGGG>AATGG		OGFOD1_uc002ejc.2_Translation_Start_Site|NUDT21_uc002eja.2_5'Flank	NM_018233	NP_060703	Q8N543	OGFD1_HUMAN	2-oxoglutarate and iron-dependent oxygenase								iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)	1					Vitamin C(DB00126)	ACACGATAAAGGGGACATGCC	0.562			NA											23	47					1.10923e-09	1.4478e-09	0.00278	1	0
GPR114	221188	broad.mit.edu	37	16	57608834	57608834	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:57608834G>A	uc002elx.3	+	11	1401	c.1316G>A	c.(1315-1317)CGC>CAC	p.R439H	GPR114_uc010vhr.1_Missense_Mutation_p.A400T|GPR114_uc002ely.2_Missense_Mutation_p.R439H	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	439	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						TGGACCCTGCGCAGGCTGCGG	0.682			NA											20	19					0	0	0.007413	0	0
CCDC135	84229	broad.mit.edu	37	16	57741492	57741492	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:57741492A>T	uc002emi.2	+	7	1068	c.979A>T	c.(979-981)AGC>TGC	p.S327C	CCDC135_uc002emj.2_Missense_Mutation_p.S327C|CCDC135_uc002emk.2_Missense_Mutation_p.S262C	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	327						cytoplasm				central_nervous_system(1)	1						CACAGGACATAGCTACAGCAC	0.567			NA											24	22					0	0	0.002299	0	0
CNOT1	23019	broad.mit.edu	37	16	58617059	58617059	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:58617059C>A	uc002env.2	-	9	1127	c.834G>T	c.(832-834)GTG>GTT	p.V278V	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Silent_p.V278V|CNOT1_uc002enx.2_Silent_p.V278V|CNOT1_uc002enz.1_Intron	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	278					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CACCAAACTGCACGATTATAT	0.423			NA											16	8					1.15088e-07	1.40192e-07	0.004007	1	0
CDH5	1003	broad.mit.edu	37	16	66422325	66422325	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:66422325T>A	uc002eom.3	+	4	754	c.598T>A	c.(598-600)TTT>ATT	p.F200I	CDH5_uc002eon.1_Missense_Mutation_p.F200I	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	200	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		GAAAGAGTATTTTGCCATCGA	0.522			NA											31	41					0	0	0.002836	0	0
KCTD19	146212	broad.mit.edu	37	16	67325561	67325561	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:67325561G>T	uc002esu.2	-	13	2449	c.2398C>A	c.(2398-2400)CCC>ACC	p.P800T	KCTD19_uc002est.2_Missense_Mutation_p.P572T|KCTD19_uc010vjj.1_Missense_Mutation_p.P543T	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	800						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		TGGGGCTGGGGACTGGCTGTG	0.627			NA											18	29					1.00905e-13	1.49675e-13	0.008871	1	0
ACD	65057	broad.mit.edu	37	16	67694282	67694282	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:67694282G>A	uc002etq.3	-	1	437	c.100C>T	c.(100-102)CGA>TGA	p.R34*	ACD_uc002etp.3_Nonsense_Mutation_p.R34*|ACD_uc002etr.3_Nonsense_Mutation_p.R34*|ACD_uc010vjt.1_Nonsense_Mutation_p.R24*|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	34					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CGTCCTGCTCGGGGGCCTGTG	0.706			NA											6	5					0	0	0.001168	0	0
PSKH1	5681	broad.mit.edu	37	16	67943054	67943054	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:67943054G>T	uc002euv.2	+	2	572	c.402G>T	c.(400-402)CGG>CGT	p.R134R	PSKH1_uc010cet.2_Silent_p.R134R	NM_006742	NP_006733	P11801	KPSH1_HUMAN	protein serine kinase H1	134	Protein kinase.					endoplasmic reticulum membrane|Golgi apparatus|microtubule organizing center|nuclear speck|plasma membrane	ATP binding|protein serine/threonine kinase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0044)|Epithelial(162;0.0197)|all cancers(182;0.128)		CCAAGTACCGGGAGGGGCGGG	0.622			NA											26	35					2.79863e-10	3.74554e-10	0.004656	1	0
CALB2	794	broad.mit.edu	37	16	71418248	71418248	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:71418248G>C	uc002faa.3	+	8	610	c.540G>C	c.(538-540)CTG>CTC	p.L180L	CALB2_uc010vme.1_Intron|CALB2_uc002fac.3_Intron	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	180	EF-hand 4.						calcium ion binding				0		Ovarian(137;0.125)				CCAGACTCCTGCCTGTCCAGG	0.547			NA											30	38					0	0	0.007291	0	0
PMFBP1	83449	broad.mit.edu	37	16	72170413	72170413	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:72170413C>A	uc002fcc.3	-	9	1309	c.1137G>T	c.(1135-1137)CAG>CAT	p.Q379H	PMFBP1_uc002fcd.2_Missense_Mutation_p.Q379H|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.Q234H	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	379	Potential.									ovary(2)	2		Ovarian(137;0.179)				GCAGCCGGCACTGCAGGATGG	0.542			NA											42	51					7.53189e-24	1.3911e-23	0.007835	1	0
PSMD7	5713	broad.mit.edu	37	16	74339560	74339560	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:74339560G>A	uc002fcq.2	+	7	1036	c.904G>A	c.(904-906)GAG>AAG	p.E302K	PSMD7_uc010vmr.1_Missense_Mutation_p.E225K	NM_002811	NP_002802	P51665	PSD7_HUMAN	proteasome 26S non-ATPase subunit 7	302	Glu/Lys-rich.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding				0						ggataggaaagaggacaagga	0.169			NA											8	20					0	0	0.00308	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76486650	76486650	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:76486650C>A	uc002feu.1	+	10	1702	c.1317C>A	c.(1315-1317)CCC>CCA	p.P439P	CNTNAP4_uc002fev.1_Silent_p.P303P|CNTNAP4_uc010chb.1_Silent_p.P366P|CNTNAP4_uc002fex.1_Silent_p.P442P|CNTNAP4_uc002few.2_Silent_p.P414P	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	439	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GAAAATTACCCAGTGACATCA	0.403			NA											10	11					7.48243e-07	8.9163e-07	0.006214	1	0
PKD1L2	114780	broad.mit.edu	37	16	81151043	81151043	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:81151043C>A	uc002fgh.1	-	41	6706	c.6706G>T	c.(6706-6708)GCG>TCG	p.A2236S	PKD1L2_uc002fgf.1_Missense_Mutation_p.A36S|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2236	Helical; (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ACAAACACCGCCAGGGCGCTC	0.622			NA											24	37					3.28513e-13	4.82768e-13	0.003954	1	0
PKD1L2	114780	broad.mit.edu	37	16	81187854	81187854	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:81187854G>T	uc002fgh.1	-	25	4215	c.4215C>A	c.(4213-4215)GCC>GCA	p.A1405A	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1405	Cytoplasmic (Potential).|PLAT.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTGAGGACGTGGCTGCCCCTC	0.537			NA											10	14					1.5842e-08	1.99285e-08	0.001855	1	0
PKD1L2	114780	broad.mit.edu	37	16	81241150	81241150	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:81241150A>T	uc002fgh.1	-	5	851	c.851T>A	c.(850-852)CTG>CAG	p.L284Q	PKD1L2_uc002fgj.2_Missense_Mutation_p.L284Q	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	284	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TATACAGGACAGGTTTCCTAT	0.478			NA											27	58					0	0	0.009535	0	0
SDR42E1	93517	broad.mit.edu	37	16	82034396	82034396	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:82034396C>A	uc002fgu.2	-	2	196	c.68G>T	c.(67-69)CGC>CTC	p.R23L		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	23					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						ATACACTTACCGAAAACCAAA	0.383			NA											9	13					3.09899e-07	3.73663e-07	0.004482	1	0
NECAB2	54550	broad.mit.edu	37	16	84031857	84031857	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:84031857G>C	uc002fhd.2	+	10	914	c.897G>C	c.(895-897)CTG>CTC	p.L299L	NECAB2_uc002fhe.2_Silent_p.L216L	NM_019065	NP_061938	Q7Z6G3	NECA2_HUMAN	neuronal calcium-binding protein 2	299	ABM.				antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity|protein binding			ovary(2)	2						CCGAGCAACTGAGCGAGTTTC	0.652			NA											20	22					0	0	0.010504	0	0
SLC38A8	146167	broad.mit.edu	37	16	84050271	84050271	+	Missense_Mutation	SNP	C	C	A	rs140920764		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:84050271C>A	uc002fhg.1	-	8	1015	c.1015G>T	c.(1015-1017)GCC>TCC	p.A339S		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	339					amino acid transport|sodium ion transport	integral to membrane					0						GAGGGGTCGGCCAGGGCGCTG	0.647			NA											26	15					1.66031e-10	2.23678e-10	0.003954	1	0
JPH3	57338	broad.mit.edu	37	16	87636837	87636837	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:87636837G>A	uc002fkd.2	+	1	339	c.85G>A	c.(85-87)GTC>ATC	p.V29I	JPH3_uc010vou.1_Intron	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	29	Gly-rich.|MORN 1.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CGGCCATGGCGTCTGCACCGG	0.637			NA											18	31					0	0	0.001882	0	0
RPH3AL	9501	broad.mit.edu	37	17	96918	96918	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:96918C>A	uc002frd.1	-	5	641	c.597G>T	c.(595-597)ACG>ACT	p.T199T	RPH3AL_uc010vpy.1_Silent_p.T199T|RPH3AL_uc002fre.1_Silent_p.T199T|RPH3AL_uc002frf.1_Silent_p.T170T|RPH3AL_uc010cjl.1_Silent_p.T170T	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	199					exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		CTCGGGCCCACGTGTAGATGC	0.617			NA											72	8					7.33394e-39	1.51575e-38	0.00361	1	0
TRPV3	162514	broad.mit.edu	37	17	3458053	3458053	+	Missense_Mutation	SNP	G	G	T	rs146728389		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:3458053G>T	uc002fvt.1	-	2	414	c.92C>A	c.(91-93)CCG>CAG	p.P31Q	TRPV3_uc010vrj.1_5'UTR|TRPV3_uc010vrk.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.P31Q|TRPV3_uc002fvu.2_Missense_Mutation_p.P31Q	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	31	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GATCTCCGCCGGCCTCTTCTC	0.642			NA											33	2					1.04594e-18	1.77735e-18	0.00623	1	0
SHPK	23729	broad.mit.edu	37	17	3514000	3514000	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:3514000C>A	uc002fvz.1	-	7	1394	c.1291G>T	c.(1291-1293)GGG>TGG	p.G431W	TRPV1_uc010vru.1_5'Flank	NM_013276	NP_037408	Q9UHJ6	SHPK_HUMAN	carbohydrate kinase-like	431					carbohydrate metabolic process	cytoplasm	ATP binding|sedoheptulokinase activity			ovary(1)	1				COAD - Colon adenocarcinoma(5;0.0828)		AGCGCACTCCCACTGCCCATC	0.617			NA											81	13					9.04243e-43	1.89081e-42	0.00361	1	0
CAMKK1	84254	broad.mit.edu	37	17	3779708	3779708	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:3779708G>A	uc002fwt.2	-	10	899	c.805C>T	c.(805-807)CAG>TAG	p.Q269*	CAMKK1_uc002fwu.2_Nonsense_Mutation_p.Q269*|CAMKK1_uc002fwv.2_Nonsense_Mutation_p.Q307*	NM_172206	NP_757343	Q8N5S9	KKCC1_HUMAN	calcium/calmodulin-dependent protein kinase 1	269	Protein kinase.				synaptic transmission	cytosol|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1				LUAD - Lung adenocarcinoma(2;2.11e-05)|Lung(3;0.0176)		ACGATCTTCTGGCAGTGCACT	0.642			NA											35	11					0	0	0.004289	0	0
ZZEF1	23140	broad.mit.edu	37	17	3955431	3955431	+	Splice_Site	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:3955431C>A	uc002fxe.2	-	35	5499	c.5435_splice	c.e35-1	p.G1812_splice	ZZEF1_uc002fxh.2_Splice_Site_p.G126_splice|ZZEF1_uc002fxi.2_Splice_Site_p.G47_splice|ZZEF1_uc002fxj.1_Splice_Site_p.G425_splice	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1								calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTCACCCCACCTGAGGAGAAA	0.557			NA											11	0					4.68919e-08	5.81656e-08	0.008291	1	0
NLRP1	22861	broad.mit.edu	37	17	5485233	5485233	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:5485233C>A	uc002gci.2	-	3	1153	c.598G>T	c.(598-600)GAG>TAG	p.E200*	NLRP1_uc002gcg.1_Nonsense_Mutation_p.E200*|NLRP1_uc002gck.2_Nonsense_Mutation_p.E200*|NLRP1_uc002gcj.2_Nonsense_Mutation_p.E200*|NLRP1_uc002gcl.2_Nonsense_Mutation_p.E200*|NLRP1_uc002gch.3_Nonsense_Mutation_p.E200*|NLRP1_uc010clh.2_Nonsense_Mutation_p.E200*	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	200					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CCAGGAGCCTCCTGCTCTCTG	0.622			NA											61	16					9.61844e-40	1.9966e-39	0.00361	1	0
TP53	7157	broad.mit.edu	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:7578457C>A	uc002gim.2	-	5	667	c.473G>T	c.(472-474)CGC>CTC	p.R158L	TP53_uc002gig.1_Missense_Mutation_p.R158L|TP53_uc002gih.2_Missense_Mutation_p.R158L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R26L|TP53_uc010cng.1_Missense_Mutation_p.R26L|TP53_uc002gii.1_Missense_Mutation_p.R26L|TP53_uc010cnh.1_Missense_Mutation_p.R158L|TP53_uc010cni.1_Missense_Mutation_p.R158L|TP53_uc002gij.2_Missense_Mutation_p.R158L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R65L|TP53_uc002gio.2_Missense_Mutation_p.R26L|TP53_uc010vug.1_Missense_Mutation_p.R119L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	158	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> F (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> H (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> S (in sporadic cancers; somatic mutation).|R -> Q (in a sporadic cancer; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R158H(58)|p.R158L(55)|p.R158C(17)|p.R158G(10)|p.R158P(9)|p.0?(7)|p.R158R(6)|p.R158fs*12(5)|p.R158_A159insX(4)|p.R158_A159delRA(2)|p.R156_I162delRVRAMAI(2)|p.V157fs*9(2)|p.P153fs*22(2)|p.R158fs*11(2)|p.V157fs*22(2)|p.V157_C176del20(1)|p.R156_A161delRVRAMA(1)|p.R158F(1)|p.P151_V173del23(1)|p.R158fs*24(1)|p.R65L(1)|p.R156_R158delRVR(1)|p.R156fs*18(1)|p.R156_A161del(1)|p.R158_A159insXX(1)|p.V157_M160delVRAM(1)|p.V157_R158delVR(1)|p.S149fs*72(1)|p.A159fs*21(1)|p.T155_A161delTRVRAMA(1)|p.G154fs*22(1)|p.R156fs*20(1)|p.V157_I162delVRAMAI(1)|p.R26L(1)|p.V157fs*21(1)|p.R158fs*8(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGCCATGGCGCGGACGCGGGT	0.627	Pancreas(47;798 1329 9957 10801)		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			46	6					1.0096e-33	2.03636e-33	0.00361	1	0
MYH13	8735	broad.mit.edu	37	17	10213109	10213109	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:10213109C>A	uc002gmk.1	-	34	4785	c.4695G>T	c.(4693-4695)GTG>GTT	p.V1565V		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1565	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCTCTAGCTGCACGCGCAAGA	0.512			NA											5	0					0.000602214	0.000642362	0.000602	1	0
MYH4	4622	broad.mit.edu	37	17	10367997	10367997	+	Splice_Site	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:10367997C>G	uc002gmn.2	-	6	644	c.533_splice	c.e6+1	p.T178_splice	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle						muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AATCTACATACGTAATCAAGA	0.333			NA											14	8					0	0	0.003163	0	0
MYH4	4622	broad.mit.edu	37	17	10368006	10368006	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:10368006G>T	uc002gmn.2	-	6	636	c.525C>A	c.(523-525)ATC>ATA	p.I175I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	175	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						ACGTAATCAAGATTGACTGGT	0.323			NA											15	8					2.23348e-06	2.62416e-06	0.004007	1	0
MYH2	4620	broad.mit.edu	37	17	10424660	10424660	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:10424660G>T	uc010coi.2	-	40	5891	c.5763C>A	c.(5761-5763)TCC>TCA	p.S1921S	uc002gml.1_Intron|MYH1_uc002gmo.2_5'Flank|MYH2_uc002gmp.3_Silent_p.S1921S|MYH2_uc010coj.2_Silent_p.S688S	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1921	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGTTCACCTGGGACTCAGCAA	0.502			NA											86	18					2.35699e-46	4.96501e-46	0.00361	1	0
MYH3	4621	broad.mit.edu	37	17	10532963	10532963	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:10532963G>A	uc002gmq.1	-	39	5824	c.5747C>T	c.(5746-5748)TCT>TTT	p.S1916F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1916	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GTTGACTTGAGATTCTGCGAT	0.547			NA											32	5					0	0	0.008361	0	0
MYH3	4621	broad.mit.edu	37	17	10552923	10552923	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:10552923G>T	uc002gmq.1	-	6	690	c.613C>A	c.(613-615)CTG>ATG	p.L205M		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	205	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TTCTTGGCCAGGTCCCCAGTA	0.488			NA											67	11					9.07738e-34	1.83611e-33	0.00361	1	0
DNAH9	1770	broad.mit.edu	37	17	11737983	11737983	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:11737983C>A	uc002gne.2	+	49	9343	c.9275C>A	c.(9274-9276)GCC>GAC	p.A3092D	DNAH9_uc010coo.2_Missense_Mutation_p.A2386D	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3092	Stalk (By similarity).|Potential.				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAGCTGGCTGCCCAGGAAGTA	0.512			NA											14	5					0.000219431	0.000240547	0.00245	1	0
TRPV2	51393	broad.mit.edu	37	17	16325967	16325967	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:16325967G>A	uc002gpy.2	+	4	756	c.389G>A	c.(388-390)GGA>GAA	p.G130E	TRPV2_uc002gpz.2_5'UTR	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	130	Cytoplasmic (Potential).|Required for interaction with SLC50A1 (By similarity).|ANK 2.				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CTTAAGGACGGAGTCAATGCC	0.572			NA											8	4					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	17	16734855	16734855	+	Missense_Mutation	SNP	C	C	T	rs688852	by1000genomes	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:16734855C>T	uc010vwr.1	-	3	720	c.278G>A	c.(277-279)CGG>CAG	p.R93Q						SubName: Full=cDNA FLJ53570, highly similar to Keratin, type I cytoskeletal 16;												NA						CACAGTCTGCCGCAGGGCCAG	0.632			NA											5	19					0	0	0.00308	0	0
RAI1	10743	broad.mit.edu	37	17	17700138	17700138	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:17700138C>T	uc002grm.2	+	3	4345	c.3876C>T	c.(3874-3876)CTC>CTT	p.L1292L	RAI1_uc002grn.1_Silent_p.L1292L	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1292						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		CCACAAAGCTCCCACCCCCGG	0.657			NA											58	15					0	0	0.00361	0	0
MAP2K3	5606	broad.mit.edu	37	17	21201777	21201777	+	Silent	SNP	C	C	A	rs145057136		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:21201777C>A	uc002gys.2	+	2	367	c.102C>A	c.(100-102)CCC>CCA	p.P34P	MAP2K3_uc002gyt.2_Silent_p.P5P|MAP2K3_uc002gyu.2_Silent_p.P5P	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	34					activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		CCAAGCCACCCGCACCCAACC	0.562			NA											47	116					1.22102e-19	2.11782e-19	0.00361	1	0
Unknown	0	broad.mit.edu	37	17	21731007	21731007	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:21731007G>T	uc002gyy.3	+	2	434	c.309G>T	c.(307-309)AAG>AAT	p.K103N						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;												NA						AAAATGTGAAGGCCAAGATCC	0.547			NA											15	36					8.28177e-16	1.30601e-15	0.007413	1	0
MYO18A	399687	broad.mit.edu	37	17	27425126	27425126	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:27425126C>A	uc002hdt.1	-	25	4145	c.3987G>T	c.(3985-3987)CTG>CTT	p.L1329L	MYO18A_uc010wbc.1_Silent_p.L871L|MYO18A_uc002hds.2_Silent_p.L871L|MYO18A_uc010csa.1_Silent_p.L1329L|MYO18A_uc002hdu.1_Silent_p.L1329L|MYO18A_uc010wbd.1_Silent_p.L998L	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1329	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CCCTCACCTGCAGTTCCTTCA	0.612	Esophageal Squamous(182;472 2015 7001 15270 22562)		NA											60	154					8.02648e-44	1.68331e-43	0.00361	1	0
SSH2	85464	broad.mit.edu	37	17	27958261	27958261	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:27958261C>G	uc002heo.1	-	15	3870	c.3870G>C	c.(3868-3870)CAG>CAC	p.Q1290H	SSH2_uc010wbh.1_Missense_Mutation_p.Q1317H	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	1290					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						TGAGGAAAGGCTGAAGCAGTT	0.537			NA											39	39					0	0	0.004878	0	0
NF1	4763	broad.mit.edu	37	17	29562765	29562765	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:29562765G>T	uc002hgg.2	+	28	4178	c.3845G>T	c.(3844-3846)AGT>ATT	p.S1282I	NF1_uc002hgh.2_Missense_Mutation_p.S1282I|NF1_uc010csn.1_Missense_Mutation_p.S1142I|NF1_uc002hgi.1_Missense_Mutation_p.S315I	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1282	Ras-GAP.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGCTTGGCCAGTAAAATAATG	0.408			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			80	52					9.42754e-34	1.90423e-33	0.00361	1	0
NF1	4763	broad.mit.edu	37	17	29653020	29653020	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:29653020A>G	uc002hgg.2	+	37	5351	c.5018A>G	c.(5017-5019)AAC>AGC	p.N1673S	NF1_uc002hgh.2_Missense_Mutation_p.N1652S|NF1_uc002hgi.1_Missense_Mutation_p.N685S|NF1_uc010cso.2_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1673	CRAL-TRIO.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GCTTACGACAACGTCTCCGCA	0.463			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			21	63					0	0	0.010504	0	0
CCL7	6354	broad.mit.edu	37	17	32598262	32598262	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:32598262C>T	uc002hhz.2	+	2	244	c.174C>T	c.(172-174)CAC>CAT	p.H58H	CCL7_uc010ctf.2_Intron	NM_006273	NP_006264	P80098	CCL7_HUMAN	chemokine (C-C motif) ligand 7 precursor	58					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding			ovary(1)	1	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		CCAGTAGCCACTGTCCCCGGG	0.493			NA											49	42					0	0	0.00361	0	0
SLFN5	162394	broad.mit.edu	37	17	33592371	33592371	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:33592371A>T	uc002hjf.3	+	5	2257	c.2140A>T	c.(2140-2142)AAT>TAT	p.N714Y	SLFN5_uc010wcg.1_3'UTR	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	714					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		AGTGGTCCGCAATGCAGGTCC	0.507			NA											29	86					0	0	0.008361	0	0
SLFN12	55106	broad.mit.edu	37	17	33738442	33738442	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:33738442G>A	uc002hji.3	-	4	2029	c.1652C>T	c.(1651-1653)GCA>GTA	p.A551V	SLFN12_uc002hjj.3_Missense_Mutation_p.A551V|SLFN12_uc010cts.2_Missense_Mutation_p.A551V	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	551							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TAGATTTTCTGCAAAGGAAAA	0.368			NA											42	30					0	0	0.006999	0	0
GAS2L2	246176	broad.mit.edu	37	17	34072312	34072312	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:34072312C>A	uc002hjv.1	-	6	2232	c.2204G>T	c.(2203-2205)AGC>ATC	p.S735I		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	735					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGCCTCCGGGCTGGCAGACAC	0.632			NA											76	76					8.79861e-51	1.86447e-50	0.00361	1	0
SYNRG	11276	broad.mit.edu	37	17	35945436	35945436	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:35945436G>T	uc002hoa.2	-	5	557	c.474C>A	c.(472-474)CCC>CCA	p.P158P	SYNRG_uc010wde.1_Silent_p.P158P|SYNRG_uc010wdf.1_Silent_p.P158P|SYNRG_uc002hoc.2_Silent_p.P157P|SYNRG_uc002hoe.2_Silent_p.P158P|SYNRG_uc002hod.2_Silent_p.P158P|SYNRG_uc010wdg.1_Silent_p.P158P|SYNRG_uc002hob.2_Silent_p.P158P|SYNRG_uc002hog.1_Silent_p.P191P|SYNRG_uc010wdh.1_Silent_p.P158P	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	158					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						ATACTACCTTGGGTTTCACAC	0.443			NA											35	112					1.90571e-15	2.97232e-15	0.004289	1	0
ORMDL3	94103	broad.mit.edu	37	17	38079405	38079405	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:38079405T>A	uc002htj.1	-	3	426	c.286A>T	c.(286-288)ACG>TCG	p.T96S	ORMDL3_uc002hti.1_RNA|ORMDL3_uc002htk.1_Missense_Mutation_p.T96S	NM_139280	NP_644809	Q8N138	ORML3_HUMAN	ORM1-like 3	96	Helical; (Potential).				ceramide metabolic process	integral to membrane|SPOTS complex	protein binding				0	Colorectal(19;0.000442)		Lung(15;0.0234)			CGAGAGGCCGTGAACTGGACC	0.617			NA											43	75					0	0	0.00874	0	0
KRTAP1-1	81851	broad.mit.edu	37	17	39197547	39197547	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:39197547A>G	uc002hvw.1	-	1	167	c.103T>C	c.(103-105)TGC>CGC	p.C35R		NM_030967	NP_112229	Q07627	KRA11_HUMAN	keratin associated protein 1-1	35			Missing (in allele KAP1.7).|PSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQT SFCGFP -> R (in allele KAP1.6).			extracellular region|keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			CGTGGCTGGCAGGAGCTGGTC	0.617			NA											37	106					0	0	0.004878	0	0
KRT34	3885	broad.mit.edu	37	17	39535648	39535648	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:39535648G>T	uc002hwm.2	-	5	971	c.959C>A	c.(958-960)ACA>AAA	p.T320K		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	320	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				GGCGTTGACTGTGCGTCTCAG	0.597			NA											20	94					3.5997e-14	5.44158e-14	0.002299	1	0
KRT31	3881	broad.mit.edu	37	17	39551818	39551818	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:39551818C>A	uc002hwn.2	-	4	699	c.646G>T	c.(646-648)GCT>TCT	p.A216S	KRT31_uc010cxn.2_Missense_Mutation_p.A216S	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	216	Linker 12.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				ACAGTGGGAGCAGCATCCACC	0.542			NA											25	41					5.35047e-06	6.20446e-06	0.00333	1	0
KRT31	3881	broad.mit.edu	37	17	39553206	39553206	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:39553206C>A	uc002hwn.2	-	2	443	c.390G>T	c.(388-390)CAG>CAT	p.Q130H	KRT31_uc010cxn.2_Missense_Mutation_p.Q130H	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	130	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				CGTTGTCGATCTGCACCACAA	0.428			NA											29	30					3.90053e-15	5.99822e-15	0.002445	1	0
KRT19	3880	broad.mit.edu	37	17	39684352	39684352	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:39684352C>A	uc002hxd.3	-	1	290	c.148G>T	c.(148-150)GCC>TCC	p.A50S	JUP_uc010wfs.1_Intron	NM_002276	NP_002267	P08727	K1C19_HUMAN	keratin 19	50	Head.				interspecies interaction between organisms|response to estrogen stimulus|sarcomere organization	costamere|intermediate filament	protein binding|structural constituent of cytoskeleton|structural constituent of muscle				0		Breast(137;0.00038)				ACAAAGCGGGCGGAGGACACG	0.741			NA											16	22					3.32936e-07	4.00085e-07	0.006122	1	0
KRT16	3868	broad.mit.edu	37	17	39766755	39766755	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:39766755T>A	uc002hxg.3	-	6	1247	c.1108A>T	c.(1108-1110)ATG>TTG	p.M370L	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	370	Rod.|Coil 2.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GACAGCTGCATGCAGTAGCGG	0.562			NA											40	38					0	0	0.006999	0	0
JUP	3728	broad.mit.edu	37	17	39913690	39913690	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:39913690G>T	uc002hxq.2	-	12	2300	c.2023C>A	c.(2023-2025)CAT>AAT	p.H675N	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Missense_Mutation_p.H675N|JUP_uc002hxs.2_Missense_Mutation_p.H675N	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	675					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		GCCGGGTCATGCTTGAAGAGG	0.463	Colon(16;42 520 6044 17852 28530)		NA											46	37					2.77807e-22	5.02027e-22	0.003214	1	0
KCNH4	23415	broad.mit.edu	37	17	40328139	40328139	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:40328139A>T	uc002hzb.2	-	5	1095	c.762T>A	c.(760-762)GAT>GAA	p.D254E		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	254	Extracellular (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TGGGGGTGTCATCGTCACCCG	0.577	NSCLC(117;707 1703 2300 21308 31858)		NA											75	57					0	0	0.00361	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40673079	40673079	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:40673079G>T	uc002hzr.2	+	22	2622	c.2455G>T	c.(2455-2457)GGT>TGT	p.G819C	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.G813C|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.G820C|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.G776C|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.G770C|ATP6V0A1_uc010cyg.2_Missense_Mutation_p.G465C|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.G678C|ATP6V0A1_uc002hzt.2_Missense_Mutation_p.G103C|ATP6V0A1_uc002hzu.2_Silent_p.P103P	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	819	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		CAGCGGGACCGGTTTCAAGTT	0.483			NA											69	168					9.07738e-34	1.83611e-33	0.00361	1	0
ETV4	2118	broad.mit.edu	37	17	41622670	41622670	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:41622670C>T	uc002idw.2	-	3	254	c.126G>A	c.(124-126)CCG>CCA	p.P42P	ETV4_uc010wih.1_Silent_p.P42P|ETV4_uc010czh.2_Silent_p.P42P|ETV4_uc010wii.1_Silent_p.P3P|ETV4_uc002idx.2_Silent_p.P42P|ETV4_uc010wij.1_Silent_p.P3P|ETV4_uc002idy.1_Silent_p.P3P	NM_001986	NP_001977	P43268	ETV4_HUMAN	ets variant gene 4 (E1A enhancer binding	42					positive regulation of transcription, DNA-dependent	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/ETV4(6)	bone(4)|soft_tissue(2)|ovary(1)	7		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0798)		GCAGGGAGCCCGGGTCCATGA	0.542	Esophageal Squamous(116;1540 1611 12927 31103 34118)		NA	T	EWSR1|TMPRSS2|DDX5|KLK2|CANT1	Ewing sarcoma|Prostate carcinoma								7	13					0	0	0.00308	0	0
NPEPPS	9520	broad.mit.edu	37	17	45669379	45669379	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:45669379A>G	uc002ilr.3	+	11	1541	c.1318A>G	c.(1318-1320)AAA>GAA	p.K440E	NPEPPS_uc010wkt.1_Missense_Mutation_p.K436E|NPEPPS_uc010wku.1_Missense_Mutation_p.K404E|NPEPPS_uc010wkv.1_5'UTR	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	440					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						ATCATATAGCAAAGGTGCATC	0.383			NA											4	72					0	0	0.000602	0	0
HOXB3	3213	broad.mit.edu	37	17	46629746	46629746	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:46629746C>A	uc002inn.2	-	1	491	c.91G>T	c.(91-93)GTC>TTC	p.V31F	HOXB3_uc010wlm.1_Intron|HOXB3_uc010dbf.2_Missense_Mutation_p.V31F|HOXB3_uc010dbg.2_Missense_Mutation_p.V31F|HOXB3_uc002ino.2_Missense_Mutation_p.V31F|HOXB3_uc010wlk.1_Intron|HOXB3_uc010wll.1_Intron	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	31					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGGGGGGGACATCGAAGCCG	0.642			NA											13	58					1.41608e-15	2.22081e-15	0.001855	1	0
HOXB9	3219	broad.mit.edu	37	17	46703298	46703298	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:46703298C>A	uc002inx.2	-	1	538	c.334G>T	c.(334-336)GGC>TGC	p.G112C		NM_024017	NP_076922	P17482	HXB9_HUMAN	homeobox B9	112					canonical Wnt receptor signaling pathway|cell chemotaxis	mitochondrion|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCGCCTGGCCCTGCCCCGGG	0.741			NA											11	3					0.000673444	0.000717266	0.008291	1	0
IGF2BP1	10642	broad.mit.edu	37	17	47115774	47115774	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:47115774G>A	uc002iom.2	+	6	980	c.646G>A	c.(646-648)GCC>ACC	p.A216T	IGF2BP1_uc010dbj.2_Intron	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	216	KH 1.|Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						CAAGGAGGGGGCCACCATCCG	0.587	Esophageal Squamous(198;1041 2123 8248 37119 38268)		NA											7	14					0	0	0.001984	0	0
LUC7L3	51747	broad.mit.edu	37	17	48821101	48821101	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:48821101A>C	uc002isr.2	+	6	578	c.461A>C	c.(460-462)GAA>GCA	p.E154A	LUC7L3_uc002isp.1_Missense_Mutation_p.E78A|LUC7L3_uc010wmw.1_Missense_Mutation_p.E78A|LUC7L3_uc002isq.2_Missense_Mutation_p.E154A|LUC7L3_uc002iss.2_Missense_Mutation_p.E154A	NM_006107	NP_006098	O95232	LC7L3_HUMAN	LUC7-like 3	154	Potential.				apoptosis|mRNA processing|response to stress|RNA splicing	focal adhesion|nuclear speck	DNA binding|mRNA binding|protein binding				0						AAAGTAGAAGAAGCCCAGGGG	0.373			NA											47	19					0	0	0.00361	0	0
KIF2B	84643	broad.mit.edu	37	17	51902054	51902054	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:51902054C>A	uc002iua.2	+	1	1816	c.1660C>A	c.(1660-1662)CAC>AAC	p.H554N	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	554					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CCATCGTGGCCACTATCCGAT	0.393			NA											73	25					3.94896e-32	7.89793e-32	0.00361	1	0
VEZF1	7716	broad.mit.edu	37	17	56060145	56060145	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:56060145C>A	uc002ivf.1	-	2	786	c.643G>T	c.(643-645)GAC>TAC	p.D215Y	VEZF1_uc010dcn.1_Missense_Mutation_p.D59Y	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	215	C2H2-type 3.				cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						GTCATCCGGTCCTTCCTCTTG	0.463			NA											26	87					8.58068e-18	1.42744e-17	0.007291	1	0
HSF5	124535	broad.mit.edu	37	17	56565295	56565295	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:56565295G>A	uc002iwi.1	-	1	465	c.341C>T	c.(340-342)CCG>CTG	p.P114L		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	114	By similarity.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCGGAAGTGCGGGTTGTGGAA	0.701			NA											14	54					0	0	0.001855	0	0
BRIP1	83990	broad.mit.edu	37	17	59793421	59793421	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:59793421C>A	uc002izk.1	-	17	2524	c.2383G>T	c.(2383-2385)GAA>TAA	p.E795*	BRIP1_uc002izl.1_Nonsense_Mutation_p.E176*	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	795					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						CGTTTTAGTTCAACCtaataa	0.294			NA	F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				24	9					1.96895e-08	2.46378e-08	0.00278	1	0
GH1	2688	broad.mit.edu	37	17	61994796	61994796	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:61994796G>T	uc002jdj.2	-	5	589	c.527C>A	c.(526-528)TCA>TAA	p.S176*	GH1_uc002jdi.2_Nonsense_Mutation_p.S161*|GH1_uc002jdk.2_Nonsense_Mutation_p.S136*|GH1_uc002jdl.2_Nonsense_Mutation_p.S81*|GH1_uc002jdm.2_Silent_p.L27L|GH1_uc002jdn.2_Missense_Mutation_p.H130N	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	176					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						ATCGTTGTGTGAGTTTGTGTC	0.552			NA											96	46					5.62478e-27	1.07657e-26	0.00361	1	0
ERN1	2081	broad.mit.edu	37	17	62126469	62126469	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:62126469C>T	uc002jdz.2	-	18	2460	c.2347G>A	c.(2347-2349)GCC>ACC	p.A783T		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	783	Cytoplasmic (Potential).|Protein kinase.				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						AGGATGTTGGCCTGCCGCTGC	0.587			NA											19	56					0	0	0.008871	0	0
ABCA5	23461	broad.mit.edu	37	17	67266797	67266797	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:67266797T>A	uc002jif.2	-	21	4205	c.2987A>T	c.(2986-2988)AAT>ATT	p.N996I	ABCA5_uc002jib.2_5'Flank|ABCA5_uc002jic.2_Missense_Mutation_p.N219I|ABCA5_uc002jid.2_5'UTR|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Missense_Mutation_p.N996I	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	996					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					TTCAGTCACATTTAAATGATA	0.303			NA											65	208					0	0	0.00361	0	0
KCNJ16	3773	broad.mit.edu	37	17	68128878	68128878	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:68128878G>T	uc002jin.2	+	5	1136	c.650G>T	c.(649-651)AGA>ATA	p.R217I	KCNJ16_uc002jio.2_Missense_Mutation_p.R217I|KCNJ16_uc002jip.2_Missense_Mutation_p.R217I|KCNJ16_uc002jiq.2_Missense_Mutation_p.R249I	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	217	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					GGAACAGTTAGAGCCCAACTT	0.473			NA											59	19					6.3091e-27	1.20593e-26	0.00361	1	0
SUMO2	6613	broad.mit.edu	37	17	73177235	73177235	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:73177235C>A	uc002jne.2	-	2	239	c.70G>T	c.(70-72)GGG>TGG	p.G24W	SUMO2_uc002jnf.2_Missense_Mutation_p.G24W	NM_006937	NP_008868	P61956	SUMO2_HUMAN	SMT3 suppressor of mif two 3 homolog 2 isoform a	24	Ubiquitin-like.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation	nucleus	ubiquitin protein ligase binding				0	all_lung(278;0.14)|Lung NSC(278;0.168)					CCATCCTGCCCCGCCACCTTC	0.383			NA											50	26					4.88482e-21	8.65173e-21	0.00361	1	0
LLGL2	3993	broad.mit.edu	37	17	73567787	73567787	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:73567787G>T	uc002joh.2	+	18	2370	c.2216G>T	c.(2215-2217)GGG>GTG	p.G739V	LLGL2_uc002joi.2_Missense_Mutation_p.G739V|LLGL2_uc010dgg.1_Missense_Mutation_p.G739V|LLGL2_uc002joj.2_Missense_Mutation_p.G728V|LLGL2_uc010wsd.1_Missense_Mutation_p.G366V	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	739	WD 11.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			GGCACCAATGGGGGCACCATC	0.662			NA											48	14					2.29192e-23	4.21121e-23	0.00361	1	0
RNF157	114804	broad.mit.edu	37	17	74151371	74151371	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:74151371T>G	uc002jqz.2	-	16	1795	c.1726A>C	c.(1726-1728)AAC>CAC	p.N576H	RNF157_uc002jra.2_Intron|uc002jrb.1_5'Flank	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	576							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			CCAGCAAAGTTGCTGTCTGGA	0.567	GBM(186;507 2120 27388 27773 52994)		NA											21	89					0	0	0.001882	0	0
ENGASE	64772	broad.mit.edu	37	17	77079562	77079562	+	Splice_Site	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:77079562A>T	uc002jwv.2	+	9	1151	c.1143_splice	c.e9-2	p.K381_splice	ENGASE_uc002jww.2_Splice_Site_p.K87_splice	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase							cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						TGTCTCTGGCAGGTTCTGGGG	0.612			NA											8	25					0	0	0.00308	0	0
CCDC40	55036	broad.mit.edu	37	17	78073477	78073477	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:78073477T>C	uc010dht.2	+	20	3359	c.3332T>C	c.(3331-3333)CTG>CCG	p.L1111P	CCDC40_uc002jxm.3_Missense_Mutation_p.L894P|CCDC40_uc002jxn.3_Missense_Mutation_p.L507P|GAA_uc002jxo.2_5'Flank|GAA_uc002jxp.2_5'Flank|GAA_uc002jxq.2_5'Flank	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1111					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GCCACCATCCTGGACCGCGTG	0.642			NA											18	53					0	0	0.010504	0	0
SLC38A10	124565	broad.mit.edu	37	17	79219442	79219442	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:79219442G>A	uc002jzz.1	-	16	3649	c.3274C>T	c.(3274-3276)CAG>TAG	p.Q1092*	SLC38A10_uc002jzy.1_Nonsense_Mutation_p.Q1010*	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	1092					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			TGGCGGAGCTGGGCATCCAGG	0.667			NA											15	57					0	0	0.003163	0	0
COLEC12	81035	broad.mit.edu	37	18	346949	346949	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:346949G>A	uc002kkm.2	-	5	888	c.673C>T	c.(673-675)CGG>TGG	p.R225W		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	225	Potential.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TCCACAGACCGCTGCAGATTC	0.478			NA											29	65					0	0	0.009535	0	0
EMILIN2	84034	broad.mit.edu	37	18	2885111	2885111	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:2885111C>T	uc002kln.2	+	3	566	c.407C>T	c.(406-408)CCT>CTT	p.P136L		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	136					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		CCGGCTCGGCCTCGAAACAGC	0.507			NA											13	28					0	0	0.00245	0	0
MYOM1	8736	broad.mit.edu	37	18	3126821	3126821	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:3126821G>A	uc002klp.2	-	19	3203	c.2869C>T	c.(2869-2871)CCA>TCA	p.P957S	MYOM1_uc002klq.2_Missense_Mutation_p.P861S	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	957	Fibronectin type-III 4.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						ATCTTATCTGGTTGCTTCCAT	0.453			NA											6	13					0	0	0.001168	0	0
LRRC30	339291	broad.mit.edu	37	18	7231280	7231280	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:7231280G>T	uc010wzk.1	+	1	144	c.144G>T	c.(142-144)ATG>ATT	p.M48I		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	48										ovary(1)|liver(1)	2						AGCGGGGCATGCACCACGTCA	0.592			NA											23	31					1.10923e-09	1.4478e-09	0.00278	1	0
APCDD1	147495	broad.mit.edu	37	18	10471946	10471946	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:10471946A>G	uc002kom.3	+	3	1016	c.662A>G	c.(661-663)CAC>CGC	p.H221R		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	221	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		TACCTTCACCACAACCTCGAC	0.577			NA											45	61					0	0	0.003214	0	0
POTEC	388468	broad.mit.edu	37	18	14537921	14537921	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:14537921G>T	uc010dln.2	-	3	1143	c.689C>A	c.(688-690)GCT>GAT	p.A230D	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	230	ANK 3.									skin(3)	3						ATTTTGATCAGCGCCATGTTC	0.383			NA											34	48					2.09667e-21	3.73674e-21	0.003755	1	0
ROCK1	6093	broad.mit.edu	37	18	18539817	18539817	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:18539817T>C	uc002kte.2	-	29	4437	c.3496A>G	c.(3496-3498)ATG>GTG	p.M1166V		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	1166	PH.|Auto-inhibitory.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					TCCAATACCATAGATGGATTG	0.289			NA											4	6					0	0	0.009096	0	0
MIB1	57534	broad.mit.edu	37	18	19348713	19348713	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:19348713G>A	uc002ktq.2	+	3	531	c.531G>A	c.(529-531)AAG>AAA	p.K177K	MIB1_uc002ktp.2_5'UTR	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	177	MIB/HERC2 2.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			GTAGGGGAAAGGTACAGTGTT	0.403			NA											5	10					0	0	0.00308	0	0
CABLES1	91768	broad.mit.edu	37	18	20716526	20716526	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:20716526G>T	uc002kuc.2	+	1	800	c.800G>T	c.(799-801)GGC>GTC	p.G267V	CABLES1_uc002kub.2_Intron	NM_001100619	NP_001094089	Q8TDN4	CABL1_HUMAN	Cdk5 and Abl enzyme substrate 1 isoform 2	267	Interacts with CDK3 (By similarity).				blood coagulation|cell cycle|cell division|regulation of cell cycle|regulation of cell division	cytosol|nucleus	cyclin-dependent protein kinase regulator activity|protein binding			breast(1)	1	all_cancers(21;0.000102)|all_epithelial(16;2.48e-06)|Lung NSC(20;0.00696)|all_lung(20;0.0197)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GAGCAGCCAGGCCAGGGCGGC	0.682			NA											12	11					6.72482e-11	9.22558e-11	0.003163	1	0
ZNF521	25925	broad.mit.edu	37	18	22805247	22805247	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:22805247C>G	uc002kvk.2	-	4	2882	c.2635G>C	c.(2635-2637)GTT>CTT	p.V879L	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.V879L|ZNF521_uc002kvl.2_Missense_Mutation_p.V659L	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	879					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					GAGGTGTCAACGTCTTCTTCG	0.537			NA	T	PAX5	ALL								32	15					0	0	0.009535	0	0
ZNF521	25925	broad.mit.edu	37	18	22805797	22805797	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:22805797G>A	uc002kvk.2	-	4	2332	c.2085C>T	c.(2083-2085)ATC>ATT	p.I695I	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.I695I|ZNF521_uc002kvl.2_Silent_p.I475I	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	695	C2H2-type 16.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					AACTCTCACAGATGTAATACG	0.453			NA	T	PAX5	ALL								16	42					0	0	0.006122	0	0
DSG3	1830	broad.mit.edu	37	18	29056037	29056037	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:29056037G>T	uc002kws.2	+	16	2923	c.2814G>T	c.(2812-2814)TCG>TCT	p.S938S	DSG3_uc002kwt.2_Silent_p.S220S	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	938	Cytoplasmic (Potential).|Desmoglein repeat 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGACTTACTCGGCTTCTGGTT	0.502			NA											23	18					7.87624e-14	1.17689e-13	0.00278	1	0
KIAA1012	22878	broad.mit.edu	37	18	29446844	29446844	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:29446844T>A	uc002kxc.3	-	18	2922	c.2558A>T	c.(2557-2559)GAT>GTT	p.D853V	KIAA1012_uc002kxb.3_Missense_Mutation_p.D799V|KIAA1012_uc002kxd.3_RNA	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	853					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						ACCAATGCCATCTACTGTCAT	0.418			NA											23	32					0	0	0.004656	0	0
KLHL14	57565	broad.mit.edu	37	18	30260411	30260411	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:30260411G>T	uc002kxm.1	-	6	1778	c.1390C>A	c.(1390-1392)CAT>AAT	p.H464N	KLHL14_uc010dmd.1_Silent_p.L11L	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	464	Kelch 3.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GCTCCCGCATGAGCCGCCAGA	0.463			NA											19	60					3.32936e-07	4.00085e-07	0.006122	1	0
ASXL3	80816	broad.mit.edu	37	18	31319839	31319839	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:31319839C>G	uc010dmg.1	+	11	2526	c.2471C>G	c.(2470-2472)CCG>CGG	p.P824R	ASXL3_uc002kxq.2_Missense_Mutation_p.P531R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	824					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GAAGCATTTCCGTCTGAAGAT	0.448			NA											10	9					0	0	0.006214	0	0
SETBP1	26040	broad.mit.edu	37	18	42530401	42530401	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:42530401G>T	uc010dni.2	+	4	1392	c.1096G>T	c.(1096-1098)GAA>TAA	p.E366*		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	366						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		TGACAATACAGAAGGGAAAAG	0.453			NA							Schinzel-Giedion_syndrome				20	19					0.000958276	0.00101835	0.007413	1	0
SETBP1	26040	broad.mit.edu	37	18	42532845	42532845	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:42532845C>A	uc010dni.2	+	4	3836	c.3540C>A	c.(3538-3540)GGC>GGA	p.G1180G		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1180						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AAGCCACAGGCTTCTCCAGCC	0.522			NA							Schinzel-Giedion_syndrome				7	52					0.00307968	0.00324849	0.00308	1	0
DCC	1630	broad.mit.edu	37	18	50832076	50832076	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:50832076G>T	uc002lfe.1	+	13	2627	c.2040G>T	c.(2038-2040)TGG>TGT	p.W680C	DCC_uc010xdr.1_Missense_Mutation_p.W528C|DCC_uc010dpf.1_Missense_Mutation_p.W335C	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	680	Extracellular (Potential).|Fibronectin type-III 3.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ACAACCTCTGGTACCTATTCA	0.408			NA											21	46					8.04996e-18	1.34072e-17	0.001882	1	0
DCC	1630	broad.mit.edu	37	18	51025781	51025781	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:51025781C>A	uc002lfe.1	+	27	4599	c.4012C>A	c.(4012-4014)CCA>ACA	p.P1338T	DCC_uc010dpf.1_Missense_Mutation_p.P971T	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1338	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TTGTGTTCGACCAACTCACCC	0.532			NA											33	35					7.11191e-15	1.08546e-14	0.002836	1	0
WDR7	23335	broad.mit.edu	37	18	54444048	54444048	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:54444048G>T	uc002lgk.1	+	17	3095	c.2884G>T	c.(2884-2886)GAT>TAT	p.D962Y	WDR7_uc010dpk.1_Intron|WDR7_uc002lgl.1_Intron	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	962										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		GTCTGATGCTGATCACTCTGG	0.428			NA											23	111					7.33532e-06	8.44422e-06	0.003954	1	0
ALPK2	115701	broad.mit.edu	37	18	56247141	56247141	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:56247141G>T	uc002lhj.3	-	4	1081	c.867C>A	c.(865-867)GCC>GCA	p.A289A		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	289							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGTTGGCCACGGCACTGTCAC	0.488			NA									OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	33					1.58986e-06	1.87881e-06	0.008291	1	0
SERPINB7	8710	broad.mit.edu	37	18	61459672	61459672	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:61459672A>G	uc002ljl.2	+	3	310	c.214A>G	c.(214-216)AGT>GGT	p.S72G	SERPINB7_uc002ljm.2_Missense_Mutation_p.S72G|SERPINB7_uc010xet.1_Intron|SERPINB7_uc010dqg.2_Missense_Mutation_p.S72G	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	72					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				CTCTTCTAATAGTCAGGTAAA	0.269			NA											23	13					0	0	0.00278	0	0
NETO1	81832	broad.mit.edu	37	18	70526112	70526112	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:70526112C>T	uc002lkw.2	-	4	702	c.418G>A	c.(418-420)GAT>AAT	p.D140N	NETO1_uc002lkx.1_Missense_Mutation_p.D139N|NETO1_uc002lky.1_Missense_Mutation_p.D140N|NETO1_uc002lkz.2_Missense_Mutation_p.D139N	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	140	CUB 1.|Extracellular (Potential).			D -> A (in Ref. 3; AAH50329).	memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		AGCTCTCCATCAGCAAAAAAT	0.338			NA											34	17					0	0	0.002836	0	0
GALR1	2587	broad.mit.edu	37	18	74962774	74962774	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:74962774C>A	uc002lms.3	+	1	767	c.270C>A	c.(268-270)CCC>CCA	p.P90P		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	90	Helical; Name=2; (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		TCTGCATCCCCTTCCAGGCCA	0.622			NA											14	74					0.000422831	0.000455111	0.004007	1	0
CTDP1	9150	broad.mit.edu	37	18	77489060	77489060	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr18:77489060G>T	uc002lnh.1	+	11	2718	c.2571G>T	c.(2569-2571)ATG>ATT	p.M857I	CTDP1_uc002lni.1_Intron|CTDP1_uc010drd.1_Missense_Mutation_p.M857I	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	857					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		TAGAGAGTATGGACAAAGAGG	0.607			NA											26	169					8.24728e-16	1.30346e-15	0.004656	1	0
APC2	10297	broad.mit.edu	37	19	1462038	1462038	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:1462038G>A	uc002lsr.1	+	14	1923	c.1715G>A	c.(1714-1716)TGC>TAC	p.C572Y	APC2_uc002lss.1_Missense_Mutation_p.C154Y|APC2_uc002lst.1_Missense_Mutation_p.C572Y|APC2_uc002lsu.1_Missense_Mutation_p.C571Y|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	572	ARM 4.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGGCCATCTGCCAGGTGGAT	0.652			NA											14	2					0	0	0.004007	0	0
EBI3	10148	broad.mit.edu	37	19	4233293	4233293	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:4233293C>A	uc002lzu.2	+	3	376	c.368C>A	c.(367-369)ACA>AAA	p.T123K		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	123	Fibronectin type-III 1.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTTTCATAACAGAGCACATC	0.353			NA											9	2					1.76689e-08	2.21484e-08	0.006214	1	0
VAV1	7409	broad.mit.edu	37	19	6821692	6821692	+	Splice_Site	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:6821692G>T	uc002mfu.1	+	3	477	c.380_splice	c.e3+1	p.M127_splice	VAV1_uc010xjh.1_Splice_Site_p.M127_splice|VAV1_uc010dva.1_Splice_Site_p.M127_splice|VAV1_uc002mfv.1_Splice_Site_p.M72_splice	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						GGGGGATCATGTGAGTAACCA	0.637			NA											22	8					3.8784e-16	6.14332e-16	0.001882	1	0
CLEC4G	339390	broad.mit.edu	37	19	7794773	7794773	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:7794773C>A	uc002mhp.3	-	8	746	c.677G>T	c.(676-678)AGG>ATG	p.R226M		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	226	Extracellular (Potential).|C-type lectin.					integral to membrane	protein binding|sugar binding				0						GCGCACAGCCCTCAGGCCCAG	0.647	Esophageal Squamous(146;540 1807 3349 19438 30853)		NA											20	5					3.8784e-16	6.14332e-16	0.001882	1	0
MUC16	94025	broad.mit.edu	37	19	9066733	9066733	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:9066733G>T	uc002mkp.2	-	3	20917	c.20713C>A	c.(20713-20715)CTA>ATA	p.L6905I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6907	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGTCAGCTAGGACAGAGGAT	0.493			NA											81	24					1.04643e-32	2.10468e-32	0.00361	1	0
MUC16	94025	broad.mit.edu	37	19	9085554	9085554	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:9085554C>T	uc002mkp.2	-	1	6465	c.6261G>A	c.(6259-6261)ACG>ACA	p.T2087T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2087	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAATTCAGTCGTAGTTGAAC	0.478			NA											74	21					0	0	0.00361	0	0
MUC16	94025	broad.mit.edu	37	19	9089641	9089641	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:9089641G>A	uc002mkp.2	-	1	2378	c.2174C>T	c.(2173-2175)CCT>CTT	p.P725L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	725	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGACAACAGAGGAATGCTGGT	0.493			NA											35	7					0	0	0.003755	0	0
MUC16	94025	broad.mit.edu	37	19	9090222	9090222	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:9090222G>T	uc002mkp.2	-	1	1797	c.1593C>A	c.(1591-1593)CCC>CCA	p.P531P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	531	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTGTGCTGGGGTTCACTAA	0.542			NA											19	7					2.4624e-09	3.1819e-09	0.008871	1	0
KEAP1	9817	broad.mit.edu	37	19	10610411	10610411	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:10610411A>G	uc002moq.1	-	2	455	c.299T>C	c.(298-300)CTG>CCG	p.L100P	KEAP1_uc002mor.1_Missense_Mutation_p.L100P	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	100	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			GGATGAGGCCAGCACCACCTT	0.612			NA											22	2					0	0	0.002299	0	0
ILF3	3609	broad.mit.edu	37	19	10794217	10794217	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:10794217A>T	uc002mpn.2	+	15	2167	c.1850A>T	c.(1849-1851)AAG>ATG	p.K617M	ILF3_uc002mpm.2_Missense_Mutation_p.K621M|ILF3_uc002mpl.2_Missense_Mutation_p.K617M|ILF3_uc002mpk.2_Missense_Mutation_p.K617M|ILF3_uc010xli.1_Missense_Mutation_p.K215M|ILF3_uc002mpo.2_Missense_Mutation_p.K621M|ILF3_uc002mpp.2_Missense_Mutation_p.K442M|ILF3_uc002mpq.2_5'Flank	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	617	Interaction with PRMT1.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			TTTGCTGCTAAGGTGAGCAGT	0.537			NA											21	7					0	0	0.010504	0	0
UNC13A	23025	broad.mit.edu	37	19	17756795	17756795	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:17756795C>G	uc002nhd.2	-	18	2434	c.2434G>C	c.(2434-2436)GAG>CAG	p.E812Q		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	724	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						AAATTCTCCTCCCACACCGGG	0.567			NA											4	1					0	0	0.009096	0	0
C19orf50	79036	broad.mit.edu	37	19	18672929	18672929	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:18672929A>G	uc002njo.2	+	2	205	c.63A>G	c.(61-63)ACA>ACG	p.T21T	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Silent_p.T21T	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	21							protein binding				0						TGGTGAACACAGATGATGTCA	0.587			NA											6	2					0	0	0.001168	0	0
CRLF1	9244	broad.mit.edu	37	19	18704380	18704380	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:18704380C>G	uc010ebt.1	-	9	1459	c.1265G>C	c.(1264-1266)AGA>ACA	p.R422T		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	422					negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						TACAGCTTATCTGGCAGGACC	0.562			NA											6	6					0	0	0.00308	0	0
CRLF1	9244	broad.mit.edu	37	19	18709629	18709629	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:18709629G>T	uc010ebt.1	-	3	674	c.480C>A	c.(478-480)CAC>CAA	p.H160Q		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	160	Fibronectin type-III 1.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						AGGTCTCCCCGTGGGCCCCTG	0.607			NA											22	25					1.77063e-15	2.76467e-15	0.005443	1	0
ZNF626	199777	broad.mit.edu	37	19	20807979	20807979	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:20807979C>A	uc002npb.1	-	4	854	c.704G>T	c.(703-705)GGC>GTC	p.G235V	ZNF626_uc002npc.1_Missense_Mutation_p.G159V	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	235	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AAAGGCTTTGCCACATTCTTC	0.388			NA											32	32					8.16721e-17	1.31861e-16	0.002096	1	0
ZNF208	7757	broad.mit.edu	37	19	22171598	22171598	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:22171598G>T	uc002nqp.2	-	2	266	c.117C>A	c.(115-117)AAC>AAA	p.N39K	ZNF208_uc002nqo.1_Missense_Mutation_p.N39K|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GGAAGACCAGGTTTCTGTAGT	0.333			NA											28	99					1.06801e-11	1.50579e-11	0.009535	1	0
ZNF676	163223	broad.mit.edu	37	19	22363598	22363598	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:22363598T>C	uc002nqs.1	-	3	1239	c.921A>G	c.(919-921)AAA>AAG	p.K307K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	307					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ACTTGTAGGGTTTCTCTCCAG	0.438			NA											3	70					0	0	0.008291	0	0
ZNF676	163223	broad.mit.edu	37	19	22363718	22363718	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:22363718G>T	uc002nqs.1	-	3	1119	c.801C>A	c.(799-801)ACC>ACA	p.T267T		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	267	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				GTGTATTAAGGGTTGAGACGC	0.388			NA											24	39					1.64293e-13	2.42691e-13	0.00333	1	0
ZNF98	148198	broad.mit.edu	37	19	22574632	22574632	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:22574632T>A	uc002nqt.2	-	4	1527	c.1405A>T	c.(1405-1407)AAA>TAA	p.K469*		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	469	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TTAAAAGCTTTGCCACATTCT	0.368			NA											10	99					0	0	0.001855	0	0
ZNF536	9745	broad.mit.edu	37	19	30936006	30936006	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:30936006G>T	uc002nsu.1	+	2	1675	c.1537G>T	c.(1537-1539)GCG>TCG	p.A513S	ZNF536_uc010edd.1_Missense_Mutation_p.A513S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	513					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TGCCAAGGCTGCGGAGATGGA	0.637			NA											30	47					1.88708e-17	3.11741e-17	0.008361	1	0
GPI	2821	broad.mit.edu	37	19	34868446	34868446	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:34868446G>T	uc002nvg.1	+	5	544	c.441G>T	c.(439-441)AAG>AAT	p.K147N	GPI_uc002nvf.2_Missense_Mutation_p.K186N|GPI_uc010xrv.1_Intron|GPI_uc010xrw.1_Intron|GPI_uc010edl.1_Missense_Mutation_p.K147N	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	147					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					ACACAGGCAAGACCATCACGG	0.597			NA											20	55					1.10923e-09	1.4478e-09	0.00278	1	0
ZNF302	55900	broad.mit.edu	37	19	35175591	35175591	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:35175591A>T	uc002nvr.1	+	6	1044	c.781A>T	c.(781-783)AGT>TGT	p.S261C	ZNF302_uc002nvp.1_Missense_Mutation_p.S217C|ZNF302_uc002nvq.1_Missense_Mutation_p.S217C|ZNF302_uc002nvs.1_Missense_Mutation_p.S217C	NM_018443	NP_060913	Q9NR11	ZN302_HUMAN	zinc finger protein 302	296	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;6.16e-07)|Lung NSC(56;9.71e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			GTCAATCCTCAGTCGCCACTG	0.443			NA											65	77					0	0	0.00361	0	0
NPHS1	4868	broad.mit.edu	37	19	36336385	36336385	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:36336385G>T	uc002oby.2	-	14	1815	c.1815C>A	c.(1813-1815)GCC>GCA	p.A605A		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	605	Ig-like C2-type 6.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGACGCTCCTGGCGGCGGCGG	0.697			NA											22	15					1.28384e-07	1.56122e-07	0.001882	1	0
CLIP3	25999	broad.mit.edu	37	19	36518058	36518058	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:36518058G>T	uc010eeq.1	-	2	564	c.282C>A	c.(280-282)CAC>CAA	p.H94Q	uc002ocy.2_Intron|CLIP3_uc002ocz.1_Missense_Mutation_p.H94Q	NM_015526	NP_056341	Q96DZ5	CLIP3_HUMAN	CAP-GLY domain containing linker protein 3	94					chaperone-mediated protein transport|fat cell differentiation|membrane biogenesis|negative regulation of microtubule polymerization|peptidyl-L-cysteine S-palmitoylation|positive regulation of apoptosis|positive regulation of endocytosis|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose transport|positive regulation of protein phosphorylation	early endosome membrane|Golgi stack|membrane raft|microsome|plasma membrane|recycling endosome membrane|trans-Golgi network membrane	ganglioside binding|microtubule binding			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CGTCTATCTTGTGCTGGACTT	0.607			NA											29	42					3.99451e-17	6.52314e-17	0.009535	1	0
ZNF566	84924	broad.mit.edu	37	19	36940594	36940594	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:36940594C>G	uc002oea.3	-	5	624	c.542G>C	c.(541-543)AGA>ACA	p.R181T	ZNF566_uc010xte.1_Missense_Mutation_p.R181T|ZNF566_uc010xtf.1_Missense_Mutation_p.R182T|ZNF566_uc002oeb.3_Missense_Mutation_p.R181T|ZNF566_uc002oec.3_Missense_Mutation_p.R77T|ZNF566_uc010xtg.1_Missense_Mutation_p.R77T	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	181	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TGAGCCATGTCTAAAGGTTTT	0.378			NA											29	60					0	0	0.00632	0	0
ZNF260	339324	broad.mit.edu	37	19	37005495	37005495	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:37005495C>G	uc002oee.1	-	4	1490	c.646G>C	c.(646-648)GGA>CGA	p.G216R	ZNF260_uc002oed.1_Missense_Mutation_p.G213R|ZNF260_uc010eey.1_Missense_Mutation_p.G213R|ZNF260_uc002oef.1_Missense_Mutation_p.G213R	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	216					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					GGTTTCTCTCCAGTATGGATT	0.403			NA											63	58					0	0	0.00361	0	0
RASGRP4	115727	broad.mit.edu	37	19	38903603	38903603	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:38903603G>T	uc002oir.2	-	12	1717	c.1503C>A	c.(1501-1503)GCC>GCA	p.A501A	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Silent_p.A432A|RASGRP4_uc010xub.1_Silent_p.A467A|RASGRP4_uc010xuc.1_Silent_p.A409A|RASGRP4_uc010xud.1_Silent_p.A404A|RASGRP4_uc010xue.1_Silent_p.A312A|RASGRP4_uc010egb.2_Silent_p.A487A	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	501	EF-hand.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GCCCATGGCAGGCGAAGGGAA	0.562			NA											39	44					1.32136e-16	2.12611e-16	0.00874	1	0
RYR1	6261	broad.mit.edu	37	19	39063883	39063883	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:39063883A>G	uc002oit.2	+	96	14195	c.14065A>G	c.(14065-14067)ATC>GTC	p.I4689V	RYR1_uc002oiu.2_Missense_Mutation_p.I4684V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4689					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGGCCTGTACATCACGGAGCA	0.622			NA											22	30					0	0	0.00278	0	0
CLC	1178	broad.mit.edu	37	19	40224969	40224969	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:40224969C>T	uc002omh.2	-	3	333	c.257G>A	c.(256-258)GGC>GAC	p.G86D		NM_001828	NP_001819	Q05315	LPPL_HUMAN	Charcot-Leyden crystal protein	86	Galectin.				lipid catabolic process|multicellular organismal development		carboxylesterase activity|lysophospholipase activity|sugar binding				0	all_cancers(60;2.99e-06)|all_lung(34;4.7e-08)|Lung NSC(34;5.46e-08)|Ovarian(47;0.06)	Renal(1328;0.000147)|Hepatocellular(1079;0.0202)|Myeloproliferative disorder(2;0.0255)	Epithelial(26;6.43e-25)|OV - Ovarian serous cystadenocarcinoma(5;1.07e-24)|all cancers(26;8.38e-23)	GBM - Glioblastoma multiforme(1328;4.97e-06)|STAD - Stomach adenocarcinoma(1328;0.00655)		AAATTCTTGGCCATCCTGAAA	0.547			NA											36	71					0	0	0.004289	0	0
FCGBP	8857	broad.mit.edu	37	19	40424300	40424300	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:40424300C>A	uc002omp.3	-	4	1911	c.1903G>T	c.(1903-1905)GAG>TAG	p.E635*		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	635	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CTTGCGAACTCCACAGCGTCA	0.602			NA											107	169					2.44514e-32	4.90406e-32	0.00361	1	0
PRX	57716	broad.mit.edu	37	19	40902280	40902280	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:40902280G>A	uc002onr.2	-	7	2248	c.1979C>T	c.(1978-1980)CCG>CTG	p.P660L	PRX_uc002onq.2_Missense_Mutation_p.P521L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	660	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGGGACTTTCGGGAGCTGCAC	0.562			NA											118	113					0	0	0.00361	0	0
ITPKC	80271	broad.mit.edu	37	19	41223332	41223332	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:41223332G>C	uc002oot.2	+	1	325	c.292G>C	c.(292-294)GCG>CCG	p.A98P	ADCK4_uc002ooq.1_5'Flank|ADCK4_uc002oor.2_5'Flank|ADCK4_uc002oos.2_5'Flank	NM_025194	NP_079470	Q96DU7	IP3KC_HUMAN	inositol 1,4,5-trisphosphate 3-kinase C	98						cytoplasm|nucleus	ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			GACTGAGCCCGCGGCAGCTGG	0.652			NA											26	20					0	0	0.004656	0	0
PSG4	5672	broad.mit.edu	37	19	43702180	43702180	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:43702180G>A	uc002ovy.2	-	3	780	c.678C>T	c.(676-678)AGC>AGT	p.S226S	PSG6_uc010xwk.1_Silent_p.S65S|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Intron|PSG4_uc002ovz.2_Silent_p.S226S	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	226	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GGTCACTGCGGCTGGCACTCA	0.522			NA											45	162					0	0	0.00361	0	0
ZNF221	7638	broad.mit.edu	37	19	44470421	44470421	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:44470421G>T	uc002oxx.2	+	6	1095	c.767G>T	c.(766-768)TGT>TTT	p.C256F	ZNF221_uc010ejb.1_Missense_Mutation_p.C256F|ZNF221_uc010xws.1_Missense_Mutation_p.C256F	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	256	C2H2-type 4; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				CCATTCAAATGTGGGCAATGT	0.398			NA											58	83					4.46115e-38	9.19346e-38	0.00361	1	0
TOMM40	10452	broad.mit.edu	37	19	45395673	45395673	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:45395673G>C	uc002ozx.3	+	3	399	c.298G>C	c.(298-300)GGT>CGT	p.G100R	TOMM40_uc002ozy.3_Missense_Mutation_p.G100R|TOMM40_uc002paa.3_Missense_Mutation_p.G100R|TOMM40_uc002ozz.2_Missense_Mutation_p.G100R	NM_006114	NP_006105	O96008	TOM40_HUMAN	translocase of outer mitochondrial membrane 40	100					protein targeting to mitochondrion	integral to membrane of membrane fraction|integral to mitochondrial outer membrane|mitochondrial outer membrane translocase complex|pore complex	porin activity|protein transmembrane transporter activity|voltage-gated anion channel activity				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)			OV - Ovarian serous cystadenocarcinoma(262;0.0033)|Epithelial(262;0.176)		TCAGATGGAGGGTGTCAAGCT	0.552			NA											44	62					0	0	0.00874	0	0
HIF3A	64344	broad.mit.edu	37	19	46832551	46832551	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:46832551A>G	uc002peh.2	+	12	1557	c.1528A>G	c.(1528-1530)AGG>GGG	p.R510G	HIF3A_uc002peg.3_Missense_Mutation_p.R510G|HIF3A_uc002pei.3_Missense_Mutation_p.R454G|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.R454G|HIF3A_uc010xxy.1_Missense_Mutation_p.R441G|HIF3A_uc002pel.2_Missense_Mutation_p.R508G|HIF3A_uc010xxz.1_Missense_Mutation_p.R459G	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	510	ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		GCAGCTACCCAGGGCCTACCA	0.647			NA											44	48					0	0	0.003214	0	0
GLTSCR1	29998	broad.mit.edu	37	19	48179129	48179129	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:48179129G>A	uc002phh.3	+	5	300	c.106G>A	c.(106-108)GAT>AAT	p.D36N		NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	36							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		TGACCTCCTGGATAATCCCGG	0.582			NA											18	8					0	0	0.006122	0	0
C19orf73	55150	broad.mit.edu	37	19	49622182	49622182	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:49622182T>A	uc002pmq.3	-	1	216	c.98A>T	c.(97-99)CAT>CTT	p.H33L	PPFIA3_uc002pmr.2_5'Flank|PPFIA3_uc010yai.1_5'Flank	NM_018111	NP_060581	Q9NVV2	CS073_HUMAN	hypothetical protein LOC55150	33										large_intestine(1)	1						GGGTGCAGAATGAGGTGCCCT	0.682			NA											32	35					0	0	0.002096	0	0
TBC1D17	79735	broad.mit.edu	37	19	50384576	50384576	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:50384576G>T	uc002pqo.2	+	5	523	c.371G>T	c.(370-372)GGG>GTG	p.G124V	TBC1D17_uc010enn.1_RNA|TBC1D17_uc010ybg.1_Missense_Mutation_p.G91V|TBC1D17_uc002pqp.2_5'UTR|TBC1D17_uc002pqq.1_RNA|TBC1D17_uc002pqr.2_5'UTR|TBC1D17_uc002pqs.2_5'Flank	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	124						intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		GTGAGTCTGGGGGAGCTAAAG	0.657			NA											15	23					4.93089e-13	7.2313e-13	0.00245	1	0
GPR32	2854	broad.mit.edu	37	19	51274689	51274689	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:51274689G>C	uc010ycf.1	+	1	832	c.832G>C	c.(832-834)GTC>CTC	p.V278L		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	278	Helical; Name=6; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		GGTGCTGTTGGTCCATCTGTG	0.597	Esophageal Squamous(113;152 1581 5732 15840 44398)		NA											42	48					0	0	0.00874	0	0
KLK3	354	broad.mit.edu	37	19	51359527	51359527	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:51359527G>T	uc002pts.1	+	2	119	c.78G>T	c.(76-78)GTG>GTT	p.V26V	KLK3_uc002ptp.1_Silent_p.V26V|KLK3_uc010ycj.1_Silent_p.V26V|KLK3_uc002ptr.1_Silent_p.V26V|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	26	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		CTCGGATTGTGGGAGGCTGGG	0.627	Colon(185;1767 2023 13025 30120 37630)		NA											64	53					1.72039e-30	3.40255e-30	0.00361	1	0
CD33	945	broad.mit.edu	37	19	51742912	51742912	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:51742912C>A	uc002pwa.2	+	7	1104	c.1064C>A	c.(1063-1065)TCC>TAC	p.S355Y	CD33_uc010eos.1_3'UTR|CD33_uc010eot.1_Missense_Mutation_p.S228Y|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	355	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	AAGGACACCTCCACCGAATAC	0.537			NA											20	36					2.37509e-13	3.5048e-13	0.010504	1	0
SIGLEC8	27181	broad.mit.edu	37	19	51960828	51960828	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:51960828G>T	uc002pwt.2	-	2	687	c.620C>A	c.(619-621)TCA>TAA	p.S207*	SIGLEC8_uc010yda.1_Intron|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Intron	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	207	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GGTGAGCACTGAGGAGCGGGC	0.662			NA											37	38					1.58521e-26	3.0138e-26	0.005524	1	0
FPR2	2358	broad.mit.edu	37	19	52272475	52272475	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:52272475G>A	uc002pxr.2	+	2	609	c.564G>A	c.(562-564)GAG>GAA	p.E188E	FPR2_uc002pxs.3_Silent_p.E188E|FPR2_uc010epf.2_Silent_p.E188E	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	188	Extracellular (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						GCACCCCTGAGGAGAGGCTGA	0.483			NA											40	65					0	0	0.00874	0	0
FPR3	2359	broad.mit.edu	37	19	52327904	52327904	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:52327904C>A	uc002pxt.1	+	2	1087	c.903C>A	c.(901-903)CTC>CTA	p.L301L		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	301	Helical; Name=7; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						ACCCAATTCTCTACGTCTTTA	0.453			NA											52	115					2.5401e-28	4.95493e-28	0.00361	1	0
ZNF616	90317	broad.mit.edu	37	19	52619865	52619865	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:52619865C>G	uc002pym.2	-	4	835	c.552G>C	c.(550-552)ACG>ACC	p.T184T	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	184					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		TACATACATACGTTTTTTCCC	0.363			NA											65	72					0	0	0.00361	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52725455	52725455	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:52725455C>G	uc002pyp.2	+	13	1781	c.1622C>G	c.(1621-1623)GCC>GGC	p.A541G	PPP2R1A_uc010ydk.1_Missense_Mutation_p.A486G|PPP2R1A_uc002pyq.2_Missense_Mutation_p.A362G	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	541	PP2A subunit C binding.|HEAT 14.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		TTCAATGTGGCCAAGTCTCTG	0.577			NA	Mis		clear cell ovarian carcinoma								23	53					0	0	0.002299	0	0
NLRP12	91662	broad.mit.edu	37	19	54297355	54297355	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:54297355C>G	uc002qch.3	-	10	3354	c.3134G>C	c.(3133-3135)AGT>ACT	p.S1045T	NLRP12_uc010eqw.2_Missense_Mutation_p.S271T|NLRP12_uc002qci.3_Missense_Mutation_p.S988T|NLRP12_uc002qcj.3_Missense_Mutation_p.S1046T|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_3'UTR	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	1045	LRR 8.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TGCCAACCTACTGTGGGTCAT	0.443			NA											33	36					0	0	0.00623	0	0
PRKCG	5582	broad.mit.edu	37	19	54403679	54403679	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:54403679C>A	uc002qcq.1	+	13	1662	c.1380C>A	c.(1378-1380)TAC>TAA	p.Y460*	PRKCG_uc010yeg.1_Nonsense_Mutation_p.Y460*|PRKCG_uc010yeh.1_Nonsense_Mutation_p.Y347*	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	460	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CCAGGTTCTACGCGGCAGAAA	0.597			NA											28	15					5.77227e-19	9.83219e-19	0.008361	1	0
LILRB2	10288	broad.mit.edu	37	19	54780277	54780277	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:54780277C>T	uc002qfb.2	-	11	1783	c.1517G>A	c.(1516-1518)GGG>GAG	p.G506E	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Intron|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.G505E|LILRB2_uc010yet.1_Missense_Mutation_p.G390E	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	506	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCCCACAGCCCCTGCAGGATG	0.622			NA											18	23					0	0	0.001882	0	0
LAIR1	3903	broad.mit.edu	37	19	54875929	54875929	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:54875929G>T	uc002qfk.1	-	2	353	c.43C>A	c.(43-45)CTG>ATG	p.L15M	LAIR1_uc002qfl.1_Missense_Mutation_p.L15M|LAIR1_uc002qfm.1_Missense_Mutation_p.L15M|LAIR1_uc002qfn.1_Missense_Mutation_p.L15M|LAIR1_uc010yex.1_Missense_Mutation_p.L9M|LAIR1_uc002qfo.2_Intron	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	15						integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		GTCTGGGCCAGGCAGAGCACT	0.612			NA											35	45					1.04594e-18	1.77735e-18	0.00623	1	0
LAIR2	3904	broad.mit.edu	37	19	55020268	55020268	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:55020268C>A	uc002qgc.2	+	4	510	c.388C>A	c.(388-390)CCG>ACG	p.P130T	LAIR2_uc002qgd.2_Intron|LAIR2_uc010erl.2_Silent_p.P98P	NM_002288	NP_002279	Q6ISS4	LAIR2_HUMAN	leukocyte-associated immunoglobulin-like	130						extracellular region	receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0967)		CCCGGACTCCCCGGACACAGA	0.627			NA											26	37					2.65835e-16	4.23906e-16	0.007291	1	0
KIR3DP1	768329	broad.mit.edu	37	19	55267590	55267590	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:55267590G>A	uc010yfi.1	+	2	60	c.59G>A	c.(58-60)TGG>TAG	p.W20*	KIR2DS4_uc010yfj.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron	NM_001015070	NP_001015070			killer-cell Ig-like receptor												0				GBM - Glioblastoma multiforme(193;0.0192)		CAGGGGGCCTGGCCACATGAG	0.552			NA											230	188					0	0	0.00361	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55341671	55341671	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:55341671A>T	uc002qhk.3	+	9	1339	c.1276A>T	c.(1276-1278)ATC>TTC	p.I426F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.I351F|KIR3DL1_uc010esf.2_Missense_Mutation_p.I331F|KIR3DL1_uc010yfo.1_Missense_Mutation_p.I368F|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_5'Flank|KIR2DS4_uc002qhm.1_5'Flank	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	426	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TACAGATACCATCTTGTACAC	0.517			NA											243	221					0	0	0.00361	0	0
NCR1	9437	broad.mit.edu	37	19	55424185	55424185	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:55424185C>A	uc002qib.2	+	7	899	c.861C>A	c.(859-861)GCC>GCA	p.A287A	NCR1_uc002qic.2_Silent_p.A286A|NCR1_uc002qie.2_Silent_p.A270A|NCR1_uc002qid.2_Silent_p.A192A|NCR1_uc002qif.2_Silent_p.A175A|NCR1_uc010esj.2_Silent_p.A180A	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	287	Cytoplasmic (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		GAGAGCGAGCCAGCAGAGCTT	0.542			NA											20	29					5.35267e-07	6.40521e-07	0.007413	1	0
TMEM190	147744	broad.mit.edu	37	19	55889205	55889205	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:55889205T>A	uc002qkt.1	+	4	274	c.256T>A	c.(256-258)TGG>AGG	p.W86R		NM_139172	NP_631911	Q8WZ59	TM190_HUMAN	transmembrane protein 190 precursor	86	Helical; (Potential).					integral to membrane					0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GGCGCTGGTCTGGACGTGCAG	0.687			NA											14	44					0	0	0.003163	0	0
NLRP4	147945	broad.mit.edu	37	19	56370165	56370165	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:56370165A>T	uc002qmd.3	+	3	1828	c.1406A>T	c.(1405-1407)CAC>CTC	p.H469L	NLRP4_uc002qmf.2_Missense_Mutation_p.H394L|NLRP4_uc010etf.2_Missense_Mutation_p.H300L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	469	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CTCAAGAGCCACCTTGATCAT	0.468			NA											40	97					0	0	0.005524	0	0
PEG3	5178	broad.mit.edu	37	19	57335793	57335793	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:57335793C>G	uc002qnu.2	-	1	582	c.231G>C	c.(229-231)CCG>CCC	p.P77P	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_5'UTR|ZIM2_uc002qnq.2_5'UTR|ZIM2_uc010etp.2_5'UTR|ZIM2_uc010ygs.1_5'UTR|PEG3_uc002qnt.2_Silent_p.P77P|PEG3_uc002qnv.2_Silent_p.P77P|PEG3_uc002qnw.2_5'UTR|PEG3_uc002qnx.2_5'UTR|PEG3_uc010etr.2_Silent_p.P77P	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	77	SCAN box.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TGCGGGTCTCCGGCTGCAACC	0.512			NA											54	12					0	0	0.00361	0	0
USP29	57663	broad.mit.edu	37	19	57642182	57642182	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:57642182T>C	uc002qny.2	+	4	2495	c.2139T>C	c.(2137-2139)AAT>AAC	p.N713N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	713					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGTCCACCAATGGCTTTTATG	0.408			NA											33	3					0	0	0.002445	0	0
ZNF530	348327	broad.mit.edu	37	19	58118528	58118528	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:58118528G>A	uc002qpk.2	+	3	1855	c.1635G>A	c.(1633-1635)AGG>AGA	p.R545R	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	545					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTGGAGAAAGGCCTTATGAGT	0.448			NA											21	46					0	0	0.002299	0	0
ZNF211	10520	broad.mit.edu	37	19	58146122	58146122	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:58146122G>T	uc002qpq.2	+	2	396	c.216G>T	c.(214-216)CTG>CTT	p.L72L	ZNF211_uc010yhb.1_Silent_p.L76L|ZNF211_uc002qpp.2_Silent_p.L85L|ZNF211_uc002qpr.2_Silent_p.L84L|ZNF211_uc002qps.2_Silent_p.L85L|ZNF211_uc002qpt.2_Silent_p.L84L|ZNF211_uc010yhc.1_Silent_p.L84L|ZNF211_uc010yhd.1_Silent_p.L11L|ZNF211_uc010yhe.1_Silent_p.L11L	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	72	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CGTCCTCCCTGGGTAAGGCCC	0.522			NA											40	48					4.00102e-26	7.56633e-26	0.00623	1	0
ZSCAN4	201516	broad.mit.edu	37	19	58189661	58189661	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:58189661T>A	uc002qpu.2	+	5	1387	c.690T>A	c.(688-690)CCT>CCA	p.P230P		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	230					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTCCTAGGCCTGAAGAGGGAG	0.413			NA											19	35					0	0	0.010504	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58190161	58190161	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:58190161C>A	uc002qpu.2	+	5	1887	c.1190C>A	c.(1189-1191)ACA>AAA	p.T397K		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	397	C2H2-type 4.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAGCCTTATACATGTCCCTTT	0.473			NA											94	84					2.68873e-43	5.63052e-43	0.00361	1	0
ZNF776	284309	broad.mit.edu	37	19	58262153	58262153	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:58262153G>T	uc002qpx.2	+	2	257	c.34G>T	c.(34-36)GGC>TGC	p.G12C	ZNF587_uc002qqb.2_5'UTR|ZNF776_uc002qqa.2_Missense_Mutation_p.G12C	NM_173632	NP_775903	Q68DI1	ZN776_HUMAN	zinc finger protein 776	12					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0256)		ATCACGGCAGGGCACTGTGAC	0.493			NA											41	79					5.44703e-19	9.2893e-19	0.009718	1	0
SNTG2	54221	broad.mit.edu	37	2	1251116	1251116	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:1251116G>T	uc002qwq.2	+	12	1034	c.906G>T	c.(904-906)TGG>TGT	p.W302C	SNTG2_uc010ewi.2_Missense_Mutation_p.W175C	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	302	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		ATATGGGGTGGGTAAATGAGA	0.502			NA											8	14					1.06961e-07	1.31304e-07	0.00308	1	0
PXDN	7837	broad.mit.edu	37	2	1652140	1652140	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:1652140C>A	uc002qxa.2	-	17	3476	c.3412G>T	c.(3412-3414)GAG>TAG	p.E1138*		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1138					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TCCGTGAGCTCCGTGTTCAGC	0.652			NA											20	22					4.63292e-17	7.55702e-17	0.008871	1	0
MYT1L	23040	broad.mit.edu	37	2	1926727	1926727	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:1926727G>T	uc002qxe.2	-	10	1641	c.814C>A	c.(814-816)CAC>AAC	p.H272N	MYT1L_uc002qxd.2_Missense_Mutation_p.H272N|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	272					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ACAACACCGTGTCCTTGGGCT	0.423			NA											57	82					1.59911e-31	3.1848e-31	0.00361	1	0
KCNF1	3754	broad.mit.edu	37	2	11053962	11053962	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:11053962C>G	uc002rax.2	+	1	1900	c.1410C>G	c.(1408-1410)CTC>CTG	p.L470L		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	470	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		GGCTGAAGCTCTCCCACAGCG	0.677			NA											9	21					0	0	0.004482	0	0
KCNF1	3754	broad.mit.edu	37	2	11053984	11053984	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:11053984C>T	uc002rax.2	+	1	1922	c.1432C>T	c.(1432-1434)CCC>TCC	p.P478S		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	478	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		CACCTTCATCCCCCTCCTGAC	0.662			NA											7	20					0	0	0.001984	0	0
GREB1	9687	broad.mit.edu	37	2	11716613	11716613	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:11716613G>T	uc002rbk.1	+	5	889	c.589G>T	c.(589-591)GCA>TCA	p.A197S	GREB1_uc002rbl.2_Missense_Mutation_p.A197S|GREB1_uc002rbm.2_Missense_Mutation_p.A87S|GREB1_uc002rbn.1_Missense_Mutation_p.A197S	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	197						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GGTCCGTAATGCACAAGGGAC	0.483	Ovarian(39;850 945 2785 23371 33093)		NA											34	43					2.09667e-21	3.73674e-21	0.003755	1	0
GREB1	9687	broad.mit.edu	37	2	11738826	11738826	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:11738826C>G	uc002rbk.1	+	15	2473	c.2173C>G	c.(2173-2175)CTG>GTG	p.L725V	GREB1_uc002rbo.1_Missense_Mutation_p.L359V	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	725						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GGAGCTTGGTCTGAAGAAAGA	0.388	Ovarian(39;850 945 2785 23371 33093)		NA											34	50					0	0	0.004289	0	0
GREB1	9687	broad.mit.edu	37	2	11780520	11780520	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:11780520C>G	uc002rbk.1	+	33	6090	c.5790C>G	c.(5788-5790)TTC>TTG	p.F1930L	GREB1_uc002rbp.1_Missense_Mutation_p.F928L	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1930						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GCGATGAGTTCCAGACCGCCA	0.602	Ovarian(39;850 945 2785 23371 33093)		NA											20	43					0	0	0.001882	0	0
NBAS	51594	broad.mit.edu	37	2	15359018	15359018	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:15359018C>A	uc002rcc.1	-	48	6337	c.6311G>T	c.(6310-6312)CGG>CTG	p.R2104L	NBAS_uc002rcb.1_Intron|NBAS_uc010exl.1_Missense_Mutation_p.R1176L|NBAS_uc002rcd.1_Intron	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2104										ovary(2)|liver(1)|skin(1)	4						AATGCGGGGCCGCACCGGCCA	0.552			NA											20	34					5.35356e-11	7.37993e-11	0.00278	1	0
NT5C1B	93034	broad.mit.edu	37	2	18767604	18767604	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:18767604G>T	uc002rcz.2	-	4	458	c.354C>A	c.(352-354)CGC>CGA	p.R118R	NT5C1B_uc002rcy.2_Silent_p.R118R|NT5C1B_uc010exr.2_Silent_p.R58R|NT5C1B_uc010yju.1_Silent_p.R58R|NT5C1B_uc002rda.2_Silent_p.R58R|NT5C1B_uc010yjv.1_Silent_p.R135R|NT5C1B_uc010yjw.1_Silent_p.R101R|NT5C1B_uc010exs.2_Silent_p.R118R|NT5C1B_uc002rdb.1_5'Flank	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	118	Ser-rich.				purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				ACCATTGACTGCGCACAAGGT	0.498			NA											48	7					2.24722e-20	3.93609e-20	0.00361	1	0
C2orf16	84226	broad.mit.edu	37	2	27801652	27801652	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:27801652C>T	uc002rkz.3	+	1	2264	c.2213C>T	c.(2212-2214)ACA>ATA	p.T738I		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	738										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCTTCAACCACACTCATTTCA	0.438			NA											24	44					0	0	0.00333	0	0
PLB1	151056	broad.mit.edu	37	2	28855821	28855821	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:28855821C>A	uc002rmb.1	+	56	4013	c.4013C>A	c.(4012-4014)ACT>AAT	p.T1338N	PLB1_uc010ezj.1_Missense_Mutation_p.T1327N|PLB1_uc002rme.1_Missense_Mutation_p.T303N|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1338	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					AGAGGGGACACTGACCTCACC	0.587			NA											12	25					6.31663e-08	7.81484e-08	0.003163	1	0
WDR43	23160	broad.mit.edu	37	2	29164364	29164364	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:29164364A>T	uc002rmo.2	+	15	1690	c.1658A>T	c.(1657-1659)CAG>CTG	p.Q553L		NM_015131	NP_055946	Q15061	WDR43_HUMAN	WD repeat domain 43	553						nucleolus				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					ACACTCTACCAGTTAATGGAA	0.388			NA											12	7					0	0	0.001368	0	0
ALK	238	broad.mit.edu	37	2	30143132	30143132	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:30143132C>A	uc002rmy.2	-	1	1301	c.394G>T	c.(394-396)GTG>TTG	p.V132L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	132	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	AGCTTGCGCACGGAGCCGCCC	0.741			NA	T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				4	1					0.00909568	0.0094611	0.009096	1	0
NLRC4	58484	broad.mit.edu	37	2	32476135	32476135	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:32476135C>G	uc002roi.2	-	4	1044	c.798G>C	c.(796-798)AAG>AAC	p.K266N	NLRC4_uc002roj.1_Missense_Mutation_p.K266N|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	266	LRR 2.|NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GGTGGTTTTCCTTTATCAGGG	0.527			NA											45	41					0	0	0.00361	0	0
BIRC6	57448	broad.mit.edu	37	2	32673862	32673862	+	Splice_Site	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:32673862G>T	uc010ezu.2	+	22	4619	c.4485_splice	c.e22-1	p.R1495_splice		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6						anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TTATTTTTCAGATATGGATTA	0.348	Pancreas(94;175 1509 16028 18060 45422)		NA											23	8					3.83957e-06	4.47793e-06	0.00278	1	0
LTBP1	4052	broad.mit.edu	37	2	33585793	33585793	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:33585793G>T	uc002ros.2	+	27	4133	c.4133G>T	c.(4132-4134)GGC>GTC	p.G1378V	LTBP1_uc002rot.2_Missense_Mutation_p.G1052V|LTBP1_uc002rou.2_Missense_Mutation_p.G1051V|LTBP1_uc002rov.2_Missense_Mutation_p.G998V|LTBP1_uc010ymz.1_Missense_Mutation_p.G1009V|LTBP1_uc010yna.1_Missense_Mutation_p.G956V|LTBP1_uc010ynb.1_Missense_Mutation_p.G275V	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1377	TB 3.				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TGTACATCAGGCGTGGGATGG	0.473			NA											21	39					2.54575e-18	4.28504e-18	0.010504	1	0
LTBP1	4052	broad.mit.edu	37	2	33614329	33614329	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:33614329G>T	uc002ros.2	+	32	4793	c.4793G>T	c.(4792-4794)AGT>ATT	p.S1598I	LTBP1_uc002rot.2_Missense_Mutation_p.S1272I|LTBP1_uc002rou.2_Missense_Mutation_p.S1271I|LTBP1_uc002rov.2_Missense_Mutation_p.S1218I|LTBP1_uc010ymz.1_Missense_Mutation_p.S1229I|LTBP1_uc010yna.1_Missense_Mutation_p.S1176I|LTBP1_uc010ynb.1_Missense_Mutation_p.S495I	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1597					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GTTGACTTCAGTGAACAGTAT	0.473			NA											22	25					8.10497e-08	9.99262e-08	0.010504	1	0
CRIM1	51232	broad.mit.edu	37	2	36691775	36691775	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:36691775G>T	uc002rpd.2	+	5	1007	c.968G>T	c.(967-969)TGT>TTT	p.C323F		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	323	Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				GGAAAGTGCTGTGATGTCTTT	0.517			NA											54	70					1.54043e-34	3.13816e-34	0.00361	1	0
DHX57	90957	broad.mit.edu	37	2	39088829	39088829	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:39088829C>A	uc002rrf.2	-	5	822	c.723G>T	c.(721-723)TTG>TTT	p.L241F	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Missense_Mutation_p.L241F	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	241							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TACACTCATCCAAGCTTATCT	0.443	Melanoma(191;1090 2095 4375 23729 47341)		NA											35	52					1.36161e-19	2.35881e-19	0.004289	1	0
TMEM178	130733	broad.mit.edu	37	2	39944284	39944284	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:39944284T>G	uc002rrt.2	+	4	812	c.787T>G	c.(787-789)TGC>GGC	p.C263G	TMEM178_uc010fam.1_Missense_Mutation_p.C217G	NM_152390	NP_689603	Q8NBL3	TM178_HUMAN	transmembrane protein 178 precursor	263	Helical; (Potential).					integral to membrane					0		all_hematologic(82;0.248)				TTGCGCCTGGTGCAGTTTAGG	0.498			NA											34	54					0	0	0.005524	0	0
ABCG5	64240	broad.mit.edu	37	2	44055222	44055222	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:44055222G>C	uc002rtn.2	-	5	674	c.534C>G	c.(532-534)AGC>AGG	p.S178R	ABCG5_uc002rtm.2_5'UTR|ABCG5_uc002rto.2_Missense_Mutation_p.S97R|ABCG5_uc002rtp.2_5'UTR	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	178	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CTGCCACATGGCTCAGACTCA	0.592			NA											14	19					0	0	0.003163	0	0
ABCG8	64241	broad.mit.edu	37	2	44099212	44099212	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:44099212T>A	uc002rtq.2	+	7	1152	c.1062T>A	c.(1060-1062)CGT>CGA	p.R354R	ABCG8_uc010yoa.1_Silent_p.R354R	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	354	Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				AAAAAGTGCGTGACTTAGATG	0.542			NA											47	9					0	0	0.002852	0	0
EPAS1	2034	broad.mit.edu	37	2	46588229	46588229	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:46588229G>T	uc002ruv.2	+	6	1267	c.779G>T	c.(778-780)AGA>ATA	p.R260I		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	260	PAS 2.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			TGTGATGACAGGTAGGGGGCC	0.537			NA											15	2					4.14922e-12	5.92033e-12	0.004007	1	0
C2orf61	285051	broad.mit.edu	37	2	47382370	47382370	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:47382370G>A	uc002rvs.2	-	1	148	c.21C>T	c.(19-21)GCC>GCT	p.A7A	C2orf61_uc010fbd.2_Intron|C2orf61_uc010yog.1_Silent_p.A7A	NM_173649	NP_775920	Q8N801	CB061_HUMAN	hypothetical protein LOC285051 isoform 2	7								p.0?(2)			0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			TGGAAGCGGTGGCGACGGCTG	0.647			NA											9	16					0	0	0.008291	0	0
CCDC85A	114800	broad.mit.edu	37	2	56420333	56420333	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:56420333G>T	uc002rzn.2	+	2	1500	c.998G>T	c.(997-999)GGA>GTA	p.G333V		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	333	His-rich.									breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AGGCACAGTGGAGGGAGCCCG	0.627			NA											22	43					1.50039e-11	2.10706e-11	0.001882	1	0
BCL11A	53335	broad.mit.edu	37	2	60679770	60679770	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:60679770G>T	uc010ypj.1	-	4	2540	c.2312C>A	c.(2311-2313)CCC>CAC	p.P771H	BCL11A_uc002sab.2_Silent_p.T754T|BCL11A_uc002sac.2_Missense_Mutation_p.P221H|BCL11A_uc010ypi.1_Silent_p.T423T	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	Error:Variant_position_missing_in_Q9H165_after_alignment					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GAGCTCTCTGGGTACTACGCC	0.522			NA	T	IGH@	B-CLL								70	9					6.86016e-32	1.37011e-31	0.00361	1	0
PPP3R1	5534	broad.mit.edu	37	2	68415683	68415683	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:68415683T>C	uc002sei.1	-	3	575	c.183A>G	c.(181-183)ATA>ATG	p.I61M		NM_000945	NP_000936	P63098	CANB1_HUMAN	protein phosphatase 3, regulatory subunit B,	61	EF-hand 2.				activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	calcineurin complex|cytosol	calcium ion binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding				0					Pimecrolimus(DB00337)	CTGTGTCGAATATATCTATTA	0.353			NA											33	52					0	0	0.002836	0	0
AAK1	22848	broad.mit.edu	37	2	69769699	69769699	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:69769699G>A	uc002sfp.2	-	5	995	c.490C>T	c.(490-492)CGC>TGC	p.R164C	AAK1_uc010fdk.2_Missense_Mutation_p.R164C|AAK1_uc010yqm.1_Missense_Mutation_p.R164C	NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	164	Protein kinase.					coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						TGATGCAGGCGGGCAACAGCT	0.488			NA											40	44					0	0	0.00623	0	0
NAGK	55577	broad.mit.edu	37	2	71298852	71298852	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:71298852G>T	uc002shp.3	+	4	656	c.250G>T	c.(250-252)GGG>TGG	p.G84W	NAGK_uc010fea.2_RNA|NAGK_uc002shq.3_5'UTR|NAGK_uc002shr.2_Missense_Mutation_p.G33W	NM_017567	NP_060037	Q9UJ70	NAGK_HUMAN	N-Acetylglucosamine kinase	84					N-acetylglucosamine metabolic process|N-acetylmannosamine metabolic process		ATP binding|N-acetylglucosamine kinase activity|protein binding				0					N-Acetyl-D-glucosamine(DB00141)	GGAGGACGCGGGGAGGATCCT	0.632			NA											6	21					8.12818e-05	8.99342e-05	0.001984	1	0
DYSF	8291	broad.mit.edu	37	2	71797024	71797024	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:71797024G>T	uc002sie.2	+	27	3261	c.2885G>T	c.(2884-2886)GGA>GTA	p.G962V	DYSF_uc010feg.2_Missense_Mutation_p.G993V|DYSF_uc010feh.2_Missense_Mutation_p.G948V|DYSF_uc002sig.3_Missense_Mutation_p.G948V|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.G962V|DYSF_uc010fef.2_Missense_Mutation_p.G979V|DYSF_uc010fei.2_Missense_Mutation_p.G979V|DYSF_uc010fek.2_Missense_Mutation_p.G980V|DYSF_uc010fej.2_Missense_Mutation_p.G949V|DYSF_uc010fel.2_Missense_Mutation_p.G949V|DYSF_uc010feo.2_Missense_Mutation_p.G994V|DYSF_uc010fem.2_Missense_Mutation_p.G963V|DYSF_uc010fen.2_Missense_Mutation_p.G980V|DYSF_uc002sif.2_Missense_Mutation_p.G963V	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	962	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CGGCTTCCCGGAGGCCAGTGG	0.577			NA											7	28					0.00621372	0.00651091	0.006214	1	0
DYSF	8291	broad.mit.edu	37	2	71838723	71838723	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:71838723C>T	uc002sie.2	+	38	4510	c.4134C>T	c.(4132-4134)CCC>CCT	p.P1378P	DYSF_uc010feg.2_Silent_p.P1409P|DYSF_uc010feh.2_Silent_p.P1364P|DYSF_uc002sig.3_Silent_p.P1364P|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.P1378P|DYSF_uc010fef.2_Silent_p.P1395P|DYSF_uc010fei.2_Silent_p.P1395P|DYSF_uc010fek.2_Silent_p.P1396P|DYSF_uc010fej.2_Silent_p.P1365P|DYSF_uc010fel.2_Silent_p.P1365P|DYSF_uc010feo.2_Silent_p.P1410P|DYSF_uc010fem.2_Silent_p.P1379P|DYSF_uc010fen.2_Silent_p.P1396P|DYSF_uc002sif.2_Silent_p.P1379P|DYSF_uc010yqy.1_Silent_p.P259P|DYSF_uc010yqz.1_Silent_p.P118P	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1378	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGAAGAACCCCAACTTTGACA	0.587			NA											11	15					0	0	0.001368	0	0
REG3A	5068	broad.mit.edu	37	2	79386515	79386515	+	Missense_Mutation	SNP	G	G	T	rs147363673		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:79386515G>T	uc002sod.1	-	1	272	c.17C>A	c.(16-18)GCC>GAC	p.A6D	REG3A_uc002soe.1_Missense_Mutation_p.A6D|REG3A_uc002sof.1_Missense_Mutation_p.A6D	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	6					acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding	p.A6V(1)		skin(1)	1						ACTGGGCAGGGCCATGGGAGG	0.532			NA											26	29					2.4375e-19	4.19203e-19	0.007291	1	0
C2orf89	129293	broad.mit.edu	37	2	85049164	85049165	+	Missense_Mutation	DNP	CC	CC	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:85049164_85049165CC>AT	uc010ysl.1	-	7	1483_1484	c.1394_1395GG>AT	c.(1393-1395)CGG>CAT	p.R465H	C2orf89_uc002sou.3_Missense_Mutation_p.R416H	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	465	Extracellular (Potential).					integral to membrane				ovary(1)	1						GGCGAGGGAGCCGCAGTTCAGT	0.594			NA											4	5					0	0	0.004672	0	0
CD8B	926	broad.mit.edu	37	2	87085357	87085357	+	Missense_Mutation	SNP	C	C	A	rs150505433		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:87085357C>A	uc002srz.2	-	2	276	c.226G>T	c.(226-228)GCA>TCA	p.A76S	RMND5A_uc002srs.3_Intron|CD8B_uc002srw.2_Missense_Mutation_p.A76S|CD8B_uc002srx.2_Missense_Mutation_p.A76S|CD8B_uc002sry.2_Missense_Mutation_p.A76S|CD8B_uc010fgt.2_Missense_Mutation_p.A76S|CD8B_uc002ssa.2_Missense_Mutation_p.A76S|CD8B_uc010yto.1_Missense_Mutation_p.A76S	NM_004931	NP_004922	P10966	CD8B_HUMAN	CD8b antigen isoform 5 precursor	76	Ig-like V-type.|Extracellular (Potential).				immune response|regulation of defense response to virus by virus|regulation of immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway|viral reproduction	early endosome|extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			upper_aerodigestive_tract(1)|skin(1)	2						GTCCCTTTTGCGGAATCCCAG	0.547			NA											34	30					2.42023e-17	3.97052e-17	0.003271	1	0
IL1R1	3554	broad.mit.edu	37	2	102792910	102792910	+	Silent	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:102792910A>T	uc002tbq.2	+	12	1719	c.1401A>T	c.(1399-1401)TCA>TCT	p.S467S	IL1R1_uc010fix.2_Silent_p.S436S|IL1R1_uc002tbr.2_Silent_p.S467S	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	467	TIR.|Cytoplasmic (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	TGGGTGGTTCATCTGAAGAGC	0.398			NA											25	5					0	0	0.004656	0	0
SH3RF3	344558	broad.mit.edu	37	2	110065636	110065636	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:110065636T>A	uc010ywt.1	+	8	1839	c.1839T>A	c.(1837-1839)TCT>TCA	p.S613S		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	613							zinc ion binding			ovary(1)	1						CTGCCCACTCTGCAGCCCAGG	0.642			NA											19	3					0	0	0.002299	0	0
GLI2	2736	broad.mit.edu	37	2	121746742	121746742	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:121746742G>C	uc010flp.2	+	13	3282	c.3252G>C	c.(3250-3252)CAG>CAC	p.Q1084H	GLI2_uc002tmq.1_Missense_Mutation_p.Q756H|GLI2_uc002tmr.1_Missense_Mutation_p.Q739H|GLI2_uc002tmt.3_Missense_Mutation_p.Q756H|GLI2_uc002tmu.3_Missense_Mutation_p.Q739H	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1084					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GCACCGGGCAGGTGTATCCCA	0.672			NA											57	10					0	0	0.00361	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125530389	125530389	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:125530389C>A	uc002tno.2	+	17	2908	c.2544C>A	c.(2542-2544)ATC>ATA	p.I848I	CNTNAP5_uc010flu.2_Silent_p.I849I	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	848	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CTTCAGAGATCACCTTTGCCA	0.488			NA											52	5					3.39706e-21	6.03168e-21	0.00361	1	0
MYO7B	4648	broad.mit.edu	37	2	128341834	128341835	+	Missense_Mutation	DNP	CC	CC	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:128341834_128341835CC>AT	uc002top.2	+	13	1534_1535	c.1481_1482CC>AT	c.(1480-1482)CCC>CAT	p.P494H		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	494	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GACAATCGGCCCACCCTGGACC	0.589			NA											34	5					0	0	0.004672	0	0
MYO7B	4648	broad.mit.edu	37	2	128351163	128351163	+	Missense_Mutation	SNP	G	G	T	rs147949489	by1000genomes	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:128351163G>T	uc002top.2	+	18	2241	c.2188G>T	c.(2188-2190)GTG>TTG	p.V730L		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	730						apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CATCACTGACGTGTGGCTGCG	0.617			NA											63	11					2.72615e-36	5.59372e-36	0.00361	1	0
GPR148	344561	broad.mit.edu	37	2	131487177	131487177	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:131487177C>A	uc002trv.1	+	1	455	c.453C>A	c.(451-453)ATC>ATA	p.I151I		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	151	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					TGGCAGTCATCCATCCACTGC	0.592			NA											37	5					1.60099e-16	2.56158e-16	0.004878	1	0
FAM123C	205147	broad.mit.edu	37	2	131520865	131520865	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:131520865C>T	uc002trw.2	+	2	1410	c.1220C>T	c.(1219-1221)ACT>ATT	p.T407I	FAM123C_uc010fmv.2_Missense_Mutation_p.T407I|FAM123C_uc010fms.1_Missense_Mutation_p.T407I|FAM123C_uc010fmt.1_Missense_Mutation_p.T407I|FAM123C_uc010fmu.1_Missense_Mutation_p.T407I	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	407										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		AGCCCAGGCACTCCTGCCGCC	0.617			NA											44	3					0	0	0.00361	0	0
FAM123C	205147	broad.mit.edu	37	2	131521632	131521632	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:131521632G>T	uc002trw.2	+	2	2177	c.1987G>T	c.(1987-1989)GGA>TGA	p.G663*	FAM123C_uc010fmv.2_Nonsense_Mutation_p.G663*|FAM123C_uc010fms.1_Nonsense_Mutation_p.G663*|FAM123C_uc010fmt.1_Nonsense_Mutation_p.G663*|FAM123C_uc010fmu.1_Nonsense_Mutation_p.G663*	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	663										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GCCAGGTCACGGAGGTGACAC	0.652			NA											18	1					7.05477e-17	1.14419e-16	0.00499	1	0
LOC401010	401010	broad.mit.edu	37	2	132201690	132201690	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:132201690C>G	uc002tst.2	-	1	778	c.312G>C	c.(310-312)TCG>TCC	p.S104S		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GCTGTATGACCGAGCCCAGGT	0.612			NA											13	2					0	0	0.001368	0	0
ZRANB3	84083	broad.mit.edu	37	2	135982056	135982056	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:135982056C>A	uc002tum.2	-	15	2307	c.2190G>T	c.(2188-2190)GTG>GTT	p.V730V	ZRANB3_uc002tuk.2_Silent_p.V273V|ZRANB3_uc002tul.2_Silent_p.V728V	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	730						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		AGGTGTCATACACTGGCAAAG	0.363			NA											25	5					1.77063e-15	2.76467e-15	0.005443	1	0
LCT	3938	broad.mit.edu	37	2	136594685	136594685	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:136594685C>G	uc002tuu.1	-	1	66	c.55G>C	c.(55-57)GGG>CGG	p.G19R		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	19					carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CAGTCTGACCCCCAGCATGAA	0.463			NA											75	9					0	0	0.00361	0	0
RIF1	55183	broad.mit.edu	37	2	152320044	152320044	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:152320044G>A	uc002txm.2	+	30	4140	c.4010G>A	c.(4009-4011)TGT>TAT	p.C1337Y	RIF1_uc002txl.2_Missense_Mutation_p.C1337Y|RIF1_uc002txn.2_Missense_Mutation_p.C1337Y|RIF1_uc002txo.2_Missense_Mutation_p.C1337Y|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1337					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		CAAACAGAATGTGTGTCAGAT	0.378			NA											31	4					0	0	0.008361	0	0
NEB	4703	broad.mit.edu	37	2	152534533	152534533	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:152534533C>A	uc010fnx.2	-	33	3615	c.3424G>T	c.(3424-3426)GAT>TAT	p.D1142Y		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1142	Nebulin 28.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTGAACATATCATGGGGCGTG	0.433			NA											37	11					1.49673e-21	2.67757e-21	0.00623	1	0
CCDC148	130940	broad.mit.edu	37	2	159033120	159033120	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:159033120T>C	uc002tzq.2	-	13	1805	c.1542A>G	c.(1540-1542)GCA>GCG	p.A514A	CCDC148_uc002tzr.2_Silent_p.A362A|CCDC148_uc010foh.2_Silent_p.A227A	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	514										ovary(2)	2						TAGCTTTTGATGCCATTGTAT	0.343			NA											19	1					0	0	0.008871	0	0
KCNH7	90134	broad.mit.edu	37	2	163253371	163253371	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:163253371C>A	uc002uch.1	-	11	2704	c.2492G>T	c.(2491-2493)TGT>TTT	p.C831F		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	831	Cytoplasmic (Potential).|cNMP.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	ATGCAAGTCACAGTATGTGAG	0.353	GBM(196;1492 2208 17507 24132 45496)		NA											28	6					3.90053e-15	5.99822e-15	0.002445	1	0
GRB14	2888	broad.mit.edu	37	2	165353977	165353977	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:165353977C>A	uc002ucl.2	-	10	1669	c.1128G>T	c.(1126-1128)CTG>CTT	p.L376L	GRB14_uc010zcv.1_Silent_p.L289L|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	376					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CCATTGCTACCAGGGAATTCT	0.373			NA											41	8					4.80596e-09	6.1544e-09	0.003214	1	0
SCN2A	6326	broad.mit.edu	37	2	166179881	166179881	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:166179881C>A	uc002udc.2	+	12	2177	c.1887C>A	c.(1885-1887)AGC>AGA	p.S629R	SCN2A_uc002udd.2_Missense_Mutation_p.S629R|SCN2A_uc002ude.2_Missense_Mutation_p.S629R	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	629					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GCCAGGCCAGCCGTGCCTCCA	0.602			NA											22	9					6.33239e-15	9.67523e-15	0.010504	1	0
XIRP2	129446	broad.mit.edu	37	2	168104538	168104538	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:168104538T>C	uc002udx.2	+	8	6654	c.6636T>C	c.(6634-6636)CTT>CTC	p.L2212L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.L2037L|XIRP2_uc010fpq.2_Silent_p.L1990L|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2037					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGTGGCAGCTTTTGCCTGTAG	0.353			NA											29	4					0	0	0.00632	0	0
PPIG	9360	broad.mit.edu	37	2	170487403	170487403	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:170487403A>G	uc002uez.2	+	10	887	c.667A>G	c.(667-669)ACT>GCT	p.T223A	PPIG_uc010fpx.2_Missense_Mutation_p.T208A|PPIG_uc010fpy.2_Missense_Mutation_p.T219A|PPIG_uc002ufa.2_Missense_Mutation_p.T223A|PPIG_uc002ufb.2_Missense_Mutation_p.T223A|PPIG_uc002ufc.1_Missense_Mutation_p.T223A|PPIG_uc002ufd.2_Missense_Mutation_p.T223A	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	223	Asp/Glu/Ser-rich.				protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CGAAAGTGCTACTGAAGAGAA	0.373			NA											83	9					0	0	0.00361	0	0
TTN	7273	broad.mit.edu	37	2	179436924	179436924	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:179436924G>T	uc010zfg.1	-	275	66455	c.66231C>A	c.(66229-66231)GGC>GGA	p.G22077G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G15772G|TTN_uc010zfi.1_Silent_p.G15705G|TTN_uc010zfj.1_Silent_p.G15580G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23004							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATTCGGCTGCCTCCATCAT	0.478			NA											39	3					3.09479e-21	5.50184e-21	0.006999	1	0
TTN	7273	broad.mit.edu	37	2	179640216	179640216	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:179640216G>A	uc010zfg.1	-	28	6599	c.6375C>T	c.(6373-6375)TAC>TAT	p.Y2125Y	TTN_uc010zfh.1_Silent_p.Y2079Y|TTN_uc010zfi.1_Silent_p.Y2079Y|TTN_uc010zfj.1_Silent_p.Y2079Y|TTN_uc002unb.2_Silent_p.Y2125Y|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2125							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCAGTACCAGTAGATCCGGT	0.483			NA											24	5					0	0	0.00278	0	0
DNAJC10	54431	broad.mit.edu	37	2	183595774	183595774	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:183595774A>G	uc002uow.1	+	9	1160	c.745A>G	c.(745-747)ATA>GTA	p.I249V	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.I249V|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	249					apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TGTCAACTCCATACAAACTGC	0.318	Pancreas(56;860 1183 25669 35822 48585)		NA											22	9					0	0	0.00333	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800922	185800922	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:185800922G>T	uc002uph.2	+	4	1393	c.799G>T	c.(799-801)GTG>TTG	p.V267L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	267						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ACCAACAGATGTGCTTTTGAG	0.403			NA											33	7					1.30897e-18	2.21638e-18	0.009535	1	0
ZNF804A	91752	broad.mit.edu	37	2	185803644	185803644	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:185803644C>G	uc002uph.2	+	4	4115	c.3521C>G	c.(3520-3522)GCT>GGT	p.A1174G		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1174						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATCATTCCAGCTTCCGTTCTT	0.512			NA											99	12					0	0	0.00361	0	0
TMEFF2	23671	broad.mit.edu	37	2	192818493	192818493	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:192818493G>T	uc002utc.2	-	9	1334	c.940C>A	c.(940-942)CCT>ACT	p.P314T		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	314	Required for shedding.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			AATCGTACAGGACCGGGAACA	0.443	Pancreas(50;1277 1381 28487 47072)		NA											58	5					4.33383e-22	7.78232e-22	0.00361	1	0
HSPD1	3329	broad.mit.edu	37	2	198363430	198363430	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:198363430G>T	uc002uui.2	-	2	280	c.143C>A	c.(142-144)GCC>GAC	p.A48D	HSPD1_uc002uuj.2_Missense_Mutation_p.A48D|HSPD1_uc010zgx.1_Missense_Mutation_p.A48D|HSPD1_uc010fsm.2_5'UTR|HSPD1_uc002uuk.2_Missense_Mutation_p.A48D|HSPD1_uc010zgy.1_Missense_Mutation_p.A48D|HSPE1_uc002uul.2_5'Flank	NM_002156	NP_002147	P10809	CH60_HUMAN	chaperonin	48					'de novo' protein folding|activation of caspase activity|B cell cytokine production|B cell proliferation|chaperone-mediated protein complex assembly|interspecies interaction between organisms|isotype switching to IgG isotypes|MyD88-dependent toll-like receptor signaling pathway|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of interferon-alpha production|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of macrophage activation|positive regulation of T cell activation|positive regulation of T cell mediated immune response to tumor cell|protein maturation|protein refolding|protein stabilization|response to unfolded protein|T cell activation	cell surface|coated pit|coated vesicle|cytosol|early endosome|extracellular space|lipopolysaccharide receptor complex|mitochondrial inner membrane|mitochondrial matrix|stored secretory granule	ATP binding|ATPase activity|cell surface binding|chaperone binding|DNA replication origin binding|lipopolysaccharide binding|p53 binding|single-stranded DNA binding				0			Epithelial(96;0.225)			CACAGCATCGGCTAAAAGGTC	0.423			NA											6	71					4.096e-09	5.27847e-09	0.001168	1	0
PARD3B	117583	broad.mit.edu	37	2	206165394	206165394	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:206165394G>T	uc002var.1	+	17	2533	c.2326G>T	c.(2326-2328)GGC>TGC	p.G776C	PARD3B_uc010fub.1_Missense_Mutation_p.G776C|PARD3B_uc002vao.1_Missense_Mutation_p.G776C|PARD3B_uc002vap.1_Missense_Mutation_p.G714C|PARD3B_uc002vaq.1_Intron	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	776					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TCGAGGCCGAGGCTGCAATGA	0.517			NA											62	14					1.63578e-51	3.47146e-51	0.00361	1	0
ERBB4	2066	broad.mit.edu	37	2	212578300	212578300	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:212578300C>A	uc002veg.1	-	8	1055	c.957G>T	c.(955-957)GGG>GGT	p.G319G	ERBB4_uc002veh.1_Silent_p.G319G|ERBB4_uc010zji.1_Silent_p.G319G|ERBB4_uc010zjj.1_Silent_p.G319G|ERBB4_uc010fut.1_Silent_p.G319G	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	319	Cys-rich.|Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ACATTTTAATCCCATTTTCTT	0.358			NA								TSP Lung(8;0.080)			16	1					2.39187e-15	3.70623e-15	0.008871	1	0
PTPRN	5798	broad.mit.edu	37	2	220167434	220167434	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:220167434C>A	uc002vkz.2	-	5	592	c.503G>T	c.(502-504)GGG>GTG	p.G168V	PTPRN_uc010zlc.1_Missense_Mutation_p.G78V|PTPRN_uc002vla.2_Missense_Mutation_p.G168V	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	168	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GGAGCTGGCCCCAGCTCCACC	0.647			NA											47	7					5.2432e-18	8.77358e-18	0.00361	1	0
GMPPA	29926	broad.mit.edu	37	2	220371037	220371037	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:220371037G>C	uc002vlr.2	+	12	1123	c.1055G>C	c.(1054-1056)CGC>CCC	p.R352P	GMPPA_uc002vls.2_Missense_Mutation_p.R352P|GMPPA_uc002vlt.2_Missense_Mutation_p.R405P|GMPPA_uc002vlu.2_Missense_Mutation_p.R405P|GMPPA_uc002vlv.2_Missense_Mutation_p.R352P|GMPPA_uc002vlw.2_RNA|GMPPA_uc002vlx.2_Missense_Mutation_p.R352P	NM_013335	NP_037467	Q96IJ6	GMPPA_HUMAN	GDP-mannose pyrophosphorylase A	352					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0		Renal(207;0.0183)		Epithelial(149;3.82e-10)|all cancers(144;6.25e-08)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00807)|READ - Rectum adenocarcinoma(5;0.148)		CGCTGGGCCCGCGTGGAGGGT	0.627			NA											47	8					0	0	0.00361	0	0
SLC4A3	6508	broad.mit.edu	37	2	220502304	220502304	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:220502304T>G	uc002vmp.3	+	17	2806	c.2537T>G	c.(2536-2538)GTG>GGG	p.V846G	SLC4A3_uc002vmo.3_Missense_Mutation_p.V873G|SLC4A3_uc010fwm.2_Missense_Mutation_p.V396G|SLC4A3_uc010fwn.1_Missense_Mutation_p.V355G	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	846	Helical; (Potential).|Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CACACACAGGTGTTCACAGAG	0.602			NA											28	4					0	0	0.007291	0	0
SCG2	7857	broad.mit.edu	37	2	224463757	224463757	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:224463757G>C	uc002vnm.2	-	2	377	c.244C>G	c.(244-246)CAA>GAA	p.Q82E		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	82					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		GAGACACCTTGGTAGGGATTA	0.448			NA											70	10					0	0	0.00361	0	0
CUL3	8452	broad.mit.edu	37	2	225378314	225378314	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:225378314C>T	uc002vny.2	-	5	965	c.581G>A	c.(580-582)GGT>GAT	p.G194D	CUL3_uc010zls.1_Missense_Mutation_p.G128D|CUL3_uc010fwy.1_Missense_Mutation_p.G200D	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	194					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		TCCTTCGAGACCTAAAATCAT	0.299			NA											19	2					0	0	0.010504	0	0
IRS1	3667	broad.mit.edu	37	2	227662185	227662185	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:227662185C>T	uc002voh.3	-	1	1322	c.1270G>A	c.(1270-1272)GGT>AGT	p.G424S		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	424	Ser-rich.				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		GAGATGAAACCGCCATCGCTG	0.612			NA									OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	11					0	0	0.00361	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881720	228881720	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:228881720C>A	uc002vpq.2	-	7	3897	c.3850G>T	c.(3850-3852)GGT>TGT	p.G1284C	SPHKAP_uc002vpp.2_Missense_Mutation_p.G1284C|SPHKAP_uc010zlx.1_Missense_Mutation_p.G1284C	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1284						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTGCAGAGACCGGATGAGGAC	0.502			NA											38	5					2.75727e-19	4.71918e-19	0.004878	1	0
SPHKAP	80309	broad.mit.edu	37	2	228882836	228882836	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:228882836C>G	uc002vpq.2	-	7	2781	c.2734G>C	c.(2734-2736)GCT>CCT	p.A912P	SPHKAP_uc002vpp.2_Missense_Mutation_p.A912P|SPHKAP_uc010zlx.1_Missense_Mutation_p.A912P	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	912						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GTGGATTGAGCAGGAAGCAGC	0.473			NA											110	16					0	0	0.00361	0	0
NEU2	4759	broad.mit.edu	37	2	233897540	233897540	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:233897540C>G	uc010zmn.1	+	1	159	c.159C>G	c.(157-159)GTC>GTG	p.V53V		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	53							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		AGCTGATTGTCCTGCGCAGAG	0.632			NA											23	4					0	0	0.001882	0	0
IQCA1	79781	broad.mit.edu	37	2	237308121	237308121	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:237308121T>C	uc002vvz.1	-	9	1327	c.1145A>G	c.(1144-1146)GAA>GGA	p.E382G	IQCA1_uc002vwb.2_Missense_Mutation_p.E389G|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.E341G	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	382	Lys-rich.						ATP binding			ovary(1)	1						TTTCCATTTTTCGTCTTCTTC	0.453			NA											50	16					0	0	0.00361	0	0
COL6A3	1293	broad.mit.edu	37	2	238303482	238303482	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:238303482G>T	uc002vwl.2	-	3	742	c.457C>A	c.(457-459)CAC>AAC	p.H153N	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.H153N	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	153	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCCTTCGAGTGTCCATCAGTT	0.493			NA											65	7					1.72039e-30	3.40255e-30	0.00361	1	0
RBM44	375316	broad.mit.edu	37	2	238727147	238727147	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:238727147G>T	uc002vxi.3	+	3	1720	c.1588G>T	c.(1588-1590)GAT>TAT	p.D530Y		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	529							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		ATACAGTGAAGATTGTATAGA	0.333			NA											4	15					0.00909568	0.0094611	0.009096	1	0
ANO7	50636	broad.mit.edu	37	2	242135200	242135200	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:242135200C>A	uc002wax.2	+	4	514	c.411C>A	c.(409-411)CAC>CAA	p.H137Q	ANO7_uc002waw.2_Missense_Mutation_p.H136Q	NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	137	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						CAGACATGCACAGGACCTGGC	0.612			NA											28	7					7.26314e-15	1.10499e-14	0.007291	1	0
ANO7	50636	broad.mit.edu	37	2	242141710	242141710	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr2:242141710C>A	uc002wax.2	+	8	979	c.876C>A	c.(874-876)CCC>CCA	p.P292P		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	292	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						CCGCCTTCCCCCTGCATGACG	0.647			NA											44	7					8.86878e-18	1.47365e-17	0.00361	1	0
SIRPG	55423	broad.mit.edu	37	20	1629907	1629907	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:1629907C>T	uc002wfm.1	-	2	286	c.221G>A	c.(220-222)CGG>CAG	p.R74Q	SIRPG_uc002wfn.1_Missense_Mutation_p.R74Q|SIRPG_uc002wfo.1_Missense_Mutation_p.R74Q	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	74	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GATTAATTCCCGGCCTGGTCC	0.512			NA											15	43					0	0	0.00245	0	0
ProSAPiP1	9762	broad.mit.edu	37	20	3146898	3146898	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:3146898G>A	uc002wia.1	-	2	1966	c.568C>T	c.(568-570)CGG>TGG	p.R190W	ProSAPiP1_uc002wib.1_Missense_Mutation_p.R190W	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	190						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						GGGCCCTGCCGTCCCTCAGGA	0.617			NA											4	10					0	0	0.009096	0	0
PLCB1	23236	broad.mit.edu	37	20	8720994	8720994	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:8720994A>T	uc002wnb.2	+	22	2315	c.2312A>T	c.(2311-2313)TAT>TTT	p.Y771F	PLCB1_uc010zrb.1_Missense_Mutation_p.Y670F|PLCB1_uc002wna.2_Missense_Mutation_p.Y771F|PLCB1_uc002wnc.1_Missense_Mutation_p.Y670F|PLCB1_uc002wnd.1_Missense_Mutation_p.Y348F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	771					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTTCCAGGCTATCACTATATC	0.398			NA											10	27					0	0	0.001368	0	0
TASP1	55617	broad.mit.edu	37	20	13561609	13561609	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:13561609C>G	uc002woi.2	-	6	540	c.423G>C	c.(421-423)TCG>TCC	p.S141S	TASP1_uc010zri.1_Intron|TASP1_uc002woh.2_Silent_p.S118S|TASP1_uc010zrj.1_RNA	NM_017714	NP_060184	Q9H6P5	TASP1_HUMAN	taspase 1 precursor	141					asparagine catabolic process via L-aspartate|positive regulation of transcription, DNA-dependent|protein maturation		threonine-type endopeptidase activity				0						TGTTGGCAACCGAGACTGGGT	0.418			NA											18	30					0	0	0.007413	0	0
C20orf7	79133	broad.mit.edu	37	20	13775574	13775574	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:13775574G>T	uc002wom.2	+	5	499	c.466G>T	c.(466-468)GTT>TTT	p.V156F	C20orf7_uc002wol.1_Missense_Mutation_p.V156F|C20orf7_uc002won.2_Intron|C20orf7_uc002woo.2_RNA	NM_024120	NP_077025	Q5TEU4	CT007_HUMAN	hypothetical protein LOC79133 isoform 1	156					mitochondrial respiratory chain complex I assembly	extrinsic to mitochondrial inner membrane	methyltransferase activity				0		Myeloproliferative disorder(85;0.00878)				TGACCTGGTGGTTAGCAGTTT	0.299			NA											5	10					0.000602214	0.000642362	0.000602	1	0
CSRP2BP	57325	broad.mit.edu	37	20	18143305	18143305	+	Missense_Mutation	SNP	G	G	T	rs144863968		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:18143305G>T	uc002wqj.2	+	7	2009	c.1387G>T	c.(1387-1389)GTG>TTG	p.V463L	CSRP2BP_uc002wqk.2_Missense_Mutation_p.V335L|CSRP2BP_uc010zru.1_Missense_Mutation_p.V334L	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	463					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						GTATACTCCCGTGAGCATCTA	0.512			NA											16	13					3.45872e-05	3.89345e-05	0.004007	1	0
C20orf79	140856	broad.mit.edu	37	20	18794586	18794586	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:18794586G>C	uc002wrk.2	+	1	217	c.127G>C	c.(127-129)GAG>CAG	p.E43Q	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	43							sterol binding			skin(3)	3						GTCAGAATTTGAGAGCTTCCC	0.502			NA											12	25					0	0	0.001368	0	0
NKX2-2	4821	broad.mit.edu	37	20	21494243	21494243	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:21494243T>A	uc002wsi.2	-	1	422	c.65A>T	c.(64-66)AAC>ATC	p.N22I		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	22					brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						CTCCTCATCGTTGGTGTCCGG	0.612			NA											17	17					0	0	0.00499	0	0
DEFB118	117285	broad.mit.edu	37	20	29960910	29960910	+	Silent	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:29960910T>G	uc002wvr.2	+	2	335	c.309T>G	c.(307-309)GTT>GTG	p.V103V		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	103					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			AAGATATGGTTGAAGAGTCTG	0.458			NA											27	40					0	0	0.004656	0	0
REM1	28954	broad.mit.edu	37	20	30064330	30064330	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:30064330C>G	uc002wwa.2	+	2	366	c.82C>G	c.(82-84)CAC>GAC	p.H28D		NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	28					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CCCACGGGGCCACCAGCCTGG	0.647			NA											33	35					0	0	0.004289	0	0
XKR7	343702	broad.mit.edu	37	20	30584609	30584609	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:30584609C>A	uc002wxe.2	+	3	1263	c.1089C>A	c.(1087-1089)GTC>GTA	p.V363V		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	363	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ACAACATGGTCGTGGGCATCA	0.582			NA											10	17					0.00621372	0.00651091	0.006214	1	0
BPIL3	128859	broad.mit.edu	37	20	31630680	31630680	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:31630680C>A	uc010zuc.1	+	13	1248	c.1248C>A	c.(1246-1248)GTC>GTA	p.V416V	BPIL3_uc010zud.1_Silent_p.V355V	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	416						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TCCCAGTTGTCAATGGTGAGG	0.488			NA											43	18					1.15505e-17	1.917e-17	0.009718	1	0
C20orf185	359710	broad.mit.edu	37	20	31659958	31659958	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:31659958G>C	uc002wym.1	+	13	1309	c.1309G>C	c.(1309-1311)GCA>CCA	p.A437P		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	437					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						GGCAGTGTATGCACCAAAGCT	0.507			NA											17	26					0	0	0.010504	0	0
FAM83C	128876	broad.mit.edu	37	20	33879855	33879855	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:33879855C>A	uc010zux.1	-	1	371	c.253G>T	c.(253-255)GTG>TTG	p.V85L	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	85										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CCCCCGCGCACATGGCTGGTC	0.677			NA											9	23					0.000274275	0.000296559	0.004482	1	0
DLGAP4	22839	broad.mit.edu	37	20	35060954	35060954	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:35060954C>A	uc002xff.2	+	3	1269	c.834C>A	c.(832-834)CCC>CCA	p.P278P	DLGAP4_uc010zvp.1_Silent_p.P278P	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	278					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CCACCTGCCCCAGCCTTGGGG	0.627			NA											13	9					7.03913e-09	8.96576e-09	0.001368	1	0
DSN1	79980	broad.mit.edu	37	20	35386978	35386978	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:35386978C>T	uc010gfr.2	-	7	1006	c.633G>A	c.(631-633)ATG>ATA	p.M211I	DSN1_uc002xfz.2_Missense_Mutation_p.M211I|DSN1_uc002xfy.3_Missense_Mutation_p.M1I|DSN1_uc002xga.2_Missense_Mutation_p.M211I|DSN1_uc010zvs.1_Missense_Mutation_p.M104I|DSN1_uc002xgc.2_Missense_Mutation_p.M195I|DSN1_uc002xgb.2_Missense_Mutation_p.M195I	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	211					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				TGTATTCCTTCATCTCAGCCA	0.303			NA											15	13					0	0	0.004007	0	0
ADIG	149685	broad.mit.edu	37	20	37210018	37210018	+	Splice_Site	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:37210018G>T	uc002xjb.1	+	1	180	c.124_splice	c.e1+1	p.D42_splice		NM_001018082	NP_001018092	Q0VDE8	ADIG_HUMAN	small adipocyte factor 1						brown fat cell differentiation|positive regulation of fat cell differentiation|white fat cell differentiation	cytoplasm|integral to membrane|nucleus					0		Myeloproliferative disorder(115;0.00878)				CTTAGCCAAGGTGAGCTTCTT	0.517			NA											15	50					0.000422831	0.000455111	0.004007	1	0
LPIN3	64900	broad.mit.edu	37	20	39974574	39974575	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:39974574_39974575GG>TT	uc002xjx.2	+	2	222_223	c.131_132GG>TT	c.(130-132)CGG>CTT	p.R44L	LPIN3_uc010ggh.2_Missense_Mutation_p.R44L|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	44	N-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				GGCTCGTTCCGGTGCTCACCCT	0.644			NA											52	40					0	0	0.004672	0	0
CHD6	84181	broad.mit.edu	37	20	40116427	40116427	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:40116427C>A	uc002xka.1	-	14	2057	c.1879G>T	c.(1879-1881)GGA>TGA	p.G627*	CHD6_uc002xkd.2_Nonsense_Mutation_p.G605*	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	627	Helicase ATP-binding.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AAGGGTGTTCCAGTGAGAAGC	0.438			NA											24	31					1.96895e-08	2.46378e-08	0.00278	1	0
PTPRT	11122	broad.mit.edu	37	20	41101007	41101007	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:41101007C>T	uc002xkg.2	-	8	1533	c.1349G>A	c.(1348-1350)CGA>CAA	p.R450Q	PTPRT_uc010ggj.2_Missense_Mutation_p.R450Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	450	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCGCAGGCCTCGCAGGGTGTA	0.602			NA											31	27					0	0	0.009535	0	0
PKIG	11142	broad.mit.edu	37	20	43246994	43246994	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:43246994A>T	uc002xmg.2	+	6	749	c.220A>T	c.(220-222)ACC>TCC	p.T74S	PKIG_uc002xmh.2_Missense_Mutation_p.T74S|PKIG_uc002xmi.2_Missense_Mutation_p.T74S	NM_181805	NP_861521	Q9Y2B9	IPKG_HUMAN	cAMP-dependent protein kinase inhibitor gamma	74							cAMP-dependent protein kinase inhibitor activity|protein binding				0		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.001)|COAD - Colon adenocarcinoma(18;0.00189)			CGATGGGACCACCTCGTCTTG	0.597			NA											48	53					0	0	0.00361	0	0
PCIF1	63935	broad.mit.edu	37	20	44574995	44574995	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:44574995G>A	uc002xqs.2	+	14	1899	c.1585G>A	c.(1585-1587)GAC>AAC	p.D529N	PCIF1_uc002xqt.2_Missense_Mutation_p.D109N|PCIF1_uc002xqu.2_5'Flank	NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	529						nucleus				skin(1)	1						TGCCTTCCCCGACACAGACGG	0.637			NA											32	62					0	0	0.002445	0	0
CDH22	64405	broad.mit.edu	37	20	44845556	44845556	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:44845556G>T	uc002xrm.2	-	4	1148	c.747C>A	c.(745-747)GAC>GAA	p.D249E	CDH22_uc010ghk.1_Missense_Mutation_p.D249E|CDH22_uc002xrn.1_5'UTR	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	249	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				GACCCGCCATGTCTGTGGCCT	0.642			NA											20	34					3.83957e-06	4.47793e-06	0.00278	1	0
ZMYND8	23613	broad.mit.edu	37	20	45853080	45853081	+	Missense_Mutation	DNP	GC	GC	AA			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GC	GC	-	-	GC	GC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:45853080_45853081GC>AA	uc002xta.1	-	19	3339_3340	c.3085_3086GC>TT	c.(3085-3087)GCC>TTC	p.A1029F	ZMYND8_uc010ghq.1_Missense_Mutation_p.A660F|ZMYND8_uc010ghr.1_Missense_Mutation_p.A931F|ZMYND8_uc002xst.1_Missense_Mutation_p.A911F|ZMYND8_uc002xsu.1_Missense_Mutation_p.A902F|ZMYND8_uc002xsv.1_Missense_Mutation_p.A957F|ZMYND8_uc002xsw.1_Missense_Mutation_p.A735F|ZMYND8_uc002xsx.1_Missense_Mutation_p.A735F|ZMYND8_uc002xsy.1_Missense_Mutation_p.A958F|ZMYND8_uc002xsz.1_Missense_Mutation_p.A920F|ZMYND8_uc010zxy.1_Missense_Mutation_p.A1056F|ZMYND8_uc002xtb.1_Missense_Mutation_p.A1003F|ZMYND8_uc002xss.2_Missense_Mutation_p.A1029F|ZMYND8_uc010zxz.1_Missense_Mutation_p.A897F|ZMYND8_uc002xtc.1_Missense_Mutation_p.A1003F|ZMYND8_uc002xtd.1_Missense_Mutation_p.A978F|ZMYND8_uc002xte.1_Missense_Mutation_p.A983F|ZMYND8_uc010zya.1_Missense_Mutation_p.A1029F|ZMYND8_uc002xtf.1_Missense_Mutation_p.A1049F|ZMYND8_uc002xsr.1_Missense_Mutation_p.A128F	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	1029	MYND-type.						protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			CTTGCAGTTGGCGCACCACTGC	0.584			NA											27	91					0	0	0.004672	0	0
ZMYND8	23613	broad.mit.edu	37	20	45853099	45853099	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:45853099T>A	uc002xta.1	-	19	3321	c.3067A>T	c.(3067-3069)AAG>TAG	p.K1023*	ZMYND8_uc010ghq.1_Nonsense_Mutation_p.K654*|ZMYND8_uc010ghr.1_Nonsense_Mutation_p.K925*|ZMYND8_uc002xst.1_Nonsense_Mutation_p.K905*|ZMYND8_uc002xsu.1_Nonsense_Mutation_p.K896*|ZMYND8_uc002xsv.1_Nonsense_Mutation_p.K951*|ZMYND8_uc002xsw.1_Nonsense_Mutation_p.K729*|ZMYND8_uc002xsx.1_Nonsense_Mutation_p.K729*|ZMYND8_uc002xsy.1_Nonsense_Mutation_p.K952*|ZMYND8_uc002xsz.1_Nonsense_Mutation_p.K914*|ZMYND8_uc010zxy.1_Nonsense_Mutation_p.K1050*|ZMYND8_uc002xtb.1_Nonsense_Mutation_p.K997*|ZMYND8_uc002xss.2_Nonsense_Mutation_p.K1023*|ZMYND8_uc010zxz.1_Nonsense_Mutation_p.K891*|ZMYND8_uc002xtc.1_Nonsense_Mutation_p.K997*|ZMYND8_uc002xtd.1_Nonsense_Mutation_p.K972*|ZMYND8_uc002xte.1_Nonsense_Mutation_p.K977*|ZMYND8_uc010zya.1_Nonsense_Mutation_p.K1023*|ZMYND8_uc002xtf.1_Nonsense_Mutation_p.K1043*|ZMYND8_uc002xsr.1_Nonsense_Mutation_p.K122*	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	1023							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			TGCTTCTTCTTGGTCTCATCC	0.602			NA											30	100					0	0	0.006999	0	0
PTPN1	5770	broad.mit.edu	37	20	49195123	49195123	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:49195123G>A	uc002xvl.2	+	6	833	c.659G>A	c.(658-660)GGC>GAC	p.G220D	PTPN1_uc010zys.1_Missense_Mutation_p.G147D	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	220	Tyrosine-protein phosphatase.|Substrate binding (By similarity).				blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	GCAGGCATCGGCAGGTCTGGA	0.592			NA											19	37					0	0	0.006122	0	0
NFATC2	4773	broad.mit.edu	37	20	50048654	50048654	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:50048654C>A	uc002xwd.2	-	9	2892	c.2672G>T	c.(2671-2673)GGG>GTG	p.G891V	NFATC2_uc002xwc.2_Missense_Mutation_p.G891V|NFATC2_uc010zyv.1_Missense_Mutation_p.G672V|NFATC2_uc010zyw.1_Missense_Mutation_p.G672V|NFATC2_uc010zyx.1_Missense_Mutation_p.G871V|NFATC2_uc010zyy.1_Missense_Mutation_p.G672V|NFATC2_uc010zyz.1_Missense_Mutation_p.G672V|NFATC2_uc002xwe.2_Missense_Mutation_p.G871V	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	891					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					AATGGTCACCCCCGCAGGTAA	0.522			NA											35	76					8.73648e-17	1.40892e-16	0.004289	1	0
ATP9A	10079	broad.mit.edu	37	20	50255930	50255930	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:50255930C>G	uc002xwg.1	-	15	1620	c.1620G>C	c.(1618-1620)CAG>CAC	p.Q540H	ATP9A_uc010gih.1_Missense_Mutation_p.Q404H|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	540	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						AAGGGAAGATCTGTAGGATGG	0.522			NA									OREG0026043	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	71					0	0	0.005524	0	0
ZFP64	55734	broad.mit.edu	37	20	50803371	50803371	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:50803371C>A	uc002xwl.2	-	2	635	c.286G>T	c.(286-288)GTT>TTT	p.V96F	ZFP64_uc002xwk.2_Missense_Mutation_p.V96F|ZFP64_uc002xwm.2_Missense_Mutation_p.V94F|ZFP64_uc002xwn.2_Missense_Mutation_p.G96C	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	96					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCAGCTGTACCTGTGATTGTC	0.473			NA											19	26					1.33834e-09	1.73886e-09	0.007413	1	0
ZNF831	128611	broad.mit.edu	37	20	57768079	57768079	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:57768079G>T	uc002yan.2	+	1	2005	c.2005G>T	c.(2005-2007)GGC>TGC	p.G669C		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	669						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGGGAGCTCAGGCACAGTCCC	0.622			NA											19	22					1.67942e-08	2.1089e-08	0.006122	1	0
CDH26	60437	broad.mit.edu	37	20	58564199	58564199	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:58564199G>T	uc002ybe.2	+	9	1564	c.1264G>T	c.(1264-1266)GAT>TAT	p.D422Y	CDH26_uc002ybf.1_Missense_Mutation_p.D2Y|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	422	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			TAATGCCATGGATCCAGACAG	0.527			NA											91	143					9.79205e-48	2.06576e-47	0.00361	1	0
CDH4	1002	broad.mit.edu	37	20	60348060	60348060	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:60348060C>T	uc002ybn.1	+	4	412	c.398C>T	c.(397-399)CCG>CTG	p.P133L	CDH4_uc002ybp.1_Missense_Mutation_p.P59L	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	133					adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CAAATAAAGCCGCAGAAAGGA	0.572			NA											6	18					0	0	0.001984	0	0
DIDO1	11083	broad.mit.edu	37	20	61512609	61512609	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:61512609C>G	uc002ydr.1	-	16	4963	c.4699G>C	c.(4699-4701)GCC>CCC	p.A1567P	DIDO1_uc002yds.1_Missense_Mutation_p.A1567P	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1567					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GTCTCAGTGGCCAGGCGCCTC	0.701	Melanoma(25;381 482 3385 5362 7955 17159 17174 40604 47095)		NA											33	23					0	0	0.002096	0	0
KCNQ2	3785	broad.mit.edu	37	20	62046337	62046337	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:62046337T>G	uc002yey.1	-	13	1621	c.1444A>C	c.(1444-1446)AAG>CAG	p.K482Q	KCNQ2_uc002yez.1_Missense_Mutation_p.K452Q|KCNQ2_uc002yfa.1_Missense_Mutation_p.K464Q|KCNQ2_uc002yfb.1_Missense_Mutation_p.K454Q	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	482	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CTCCAGCTCTTGGGCACCTTG	0.692			NA											33	51					0	0	0.002096	0	0
EEF1A2	1917	broad.mit.edu	37	20	62126425	62126425	+	Silent	SNP	C	C	A	rs143957818		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:62126425C>A	uc002yfd.1	-	3	455	c.354G>T	c.(352-354)GCG>GCT	p.A118A	EEF1A2_uc002yfe.1_Silent_p.A118A|EEF1A2_uc010gkg.1_Silent_p.A118A	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	118						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			CGCCCACGCCCGCCGCCACGA	0.711			NA											26	48					4.4194e-11	6.12182e-11	0.002836	1	0
C20orf195	79025	broad.mit.edu	37	20	62187822	62187822	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:62187822A>T	uc002yfj.2	+	2	898	c.806A>T	c.(805-807)GAC>GTC	p.D269V	C20orf195_uc002yfk.2_Missense_Mutation_p.D269V	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	269											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			TGCACCTTCGACGTCCGAAAC	0.627			NA											37	88					0	0	0.006999	0	0
MYT1	4661	broad.mit.edu	37	20	62863576	62863576	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:62863576G>T	uc002yii.2	+	19	3099	c.2735G>T	c.(2734-2736)AGG>ATG	p.R912M	MYT1_uc002yij.2_Missense_Mutation_p.R571M	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	912	C2HC-type 6.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GCCTCTCACAGGAGCGCATCC	0.632	GBM(59;481 1041 20555 21139 33705)		NA											22	36					7.45023e-12	1.05458e-11	0.010504	1	0
CLDN8	9073	broad.mit.edu	37	21	31588042	31588042	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr21:31588042C>A	uc002ynu.1	-	1	277	c.202G>T	c.(202-204)GAT>TAT	p.D68Y		NM_199328	NP_955360	P56748	CLD8_HUMAN	claudin 8	68	Extracellular (Potential).				calcium-independent cell-cell adhesion	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						AGCAGGGAATCATAGATTTTG	0.488			NA											23	8					9.95505e-16	1.56641e-15	0.002299	1	0
CLIC6	54102	broad.mit.edu	37	21	36088700	36088700	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr21:36088700A>G	uc010gmt.1	+	7	2035	c.2035A>G	c.(2035-2037)AGA>GGA	p.R679G	CLIC6_uc002yuf.1_Missense_Mutation_p.R661G	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	679	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						TGCTTATGCTAGAGATGAGTT	0.373			NA											24	7					0	0	0.00278	0	0
ABCG1	9619	broad.mit.edu	37	21	43711290	43711290	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr21:43711290C>T	uc002zaq.2	+	12	1624	c.1518C>T	c.(1516-1518)GAC>GAT	p.D506D	ABCG1_uc002zan.2_Silent_p.D496D|ABCG1_uc002zam.2_Silent_p.D472D|ABCG1_uc002zao.2_Silent_p.D491D|ABCG1_uc002zap.2_Silent_p.D494D|ABCG1_uc002zar.2_Silent_p.D505D|ABCG1_uc011aev.1_Silent_p.D517D|ABCG1_uc010gpb.1_Missense_Mutation_p.R147C	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	506	ABC transmembrane type-2.|Cytoplasmic (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	CCATGGCAGACGTGCCCTTTC	0.532			NA											12	3					0	0	0.001368	0	0
COL6A2	1292	broad.mit.edu	37	21	47540982	47540982	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr21:47540982G>A	uc002zia.1	+	17	1485	c.1403G>A	c.(1402-1404)CGA>CAA	p.R468Q	COL6A2_uc002zhy.1_Missense_Mutation_p.R468Q|COL6A2_uc002zhz.1_Missense_Mutation_p.R468Q|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	468	Triple-helical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CAGGGAGACCGAGGCTTGCCT	0.637			NA											14	10					0	0	0.003163	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073042	17073042	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:17073042C>A	uc002zlp.1	-	1	659	c.399G>T	c.(397-399)CGG>CGT	p.R133R		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	133					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CGTAGGCCTCCCGGAGCTGCG	0.647			NA											8	21					0.000274275	0.000296559	0.004482	1	0
MICAL3	57553	broad.mit.edu	37	22	18300138	18300138	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:18300138G>A	uc002zng.3	-	26	5642	c.5289C>T	c.(5287-5289)ACC>ACT	p.T1763T	MICAL3_uc011agl.1_Silent_p.T1679T|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1763						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CGCTGGAGGGGGTGCTGGGGC	0.642			NA											3	6					0	0	0.004672	0	0
RTN4R	65078	broad.mit.edu	37	22	20229571	20229571	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:20229571C>A	uc002zrv.2	-	2	1286	c.1085G>T	c.(1084-1086)CGC>CTC	p.R362L	RTN4R_uc002zru.2_Missense_Mutation_p.R134L	NM_023004	NP_075380	Q9BZR6	RTN4R_HUMAN	reticulon 4 receptor precursor	362					axonogenesis|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	anchored to membrane|cell surface|endoplasmic reticulum|plasma membrane	protein binding|receptor activity				0	Colorectal(54;0.0993)					GGGCGGCACGCGTCCCTTCAG	0.672			NA											14	21					0.000219431	0.000240547	0.00245	1	0
MAPK1	5594	broad.mit.edu	37	22	22143003	22143003	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:22143003T>A	uc002zvn.2	-	5	944	c.704A>T	c.(703-705)GAC>GTC	p.D235V	MAPK1_uc002zvo.2_Missense_Mutation_p.D235V|MAPK1_uc010gtk.1_Missense_Mutation_p.D235V	NM_002745	NP_002736	P28482	MK01_HUMAN	mitogen-activated protein kinase 1	235	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|induction of apoptosis|innate immune response|insulin receptor signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleoplasm	ATP binding|DNA binding|MAP kinase activity|phosphatase binding|RNA polymerase II carboxy-terminal domain kinase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	Colorectal(54;0.105)	all_lung(157;3.89e-05)		READ - Rectum adenocarcinoma(21;0.0689)	Arsenic trioxide(DB01169)	GTTCAGCTGGTCAAGATAATG	0.438			NA											16	25					0	0	0.004007	0	0
GSTT2	2953	broad.mit.edu	37	22	24323170	24323170	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:24323170C>T	uc002zzb.3	+	2	219	c.144C>T	c.(142-144)ATC>ATT	p.I48I	DDT_uc002zza.3_5'Flank|GSTT2_uc002zzc.3_Silent_p.I48I	NM_000854	NP_000845	P0CG30	GSTT2_HUMAN	glutathione S-transferase theta 2	48	GST N-terminal.					cytoplasm	glutathione transferase activity				0						TCTTGCAGATCAACAGCCTGG	0.547			NA											33	68					0	0	0.00361	0	0
ADRBK2	157	broad.mit.edu	37	22	26110499	26110499	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:26110499G>T	uc003abx.3	+	18	1763	c.1616G>T	c.(1615-1617)AGG>ATG	p.R539M	ADRBK2_uc003abw.2_Missense_Mutation_p.R426M|ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	539							ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity			lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	ATCGAGGCCAGGAAGAGAGCT	0.383			NA											9	12					3.09899e-07	3.73663e-07	0.004482	1	0
PATZ1	23598	broad.mit.edu	37	22	31741545	31741545	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:31741545T>C	uc003akq.2	-	1	705	c.44A>G	c.(43-45)TAC>TGC	p.Y15C	PATZ1_uc003akp.2_Missense_Mutation_p.Y15C|PATZ1_uc003akr.2_Missense_Mutation_p.Y15C|PATZ1_uc003aks.2_Missense_Mutation_p.Y15C|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	15					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						CTGGTATGTGTAGCAGCCAGA	0.682			NA											10	18					0	0	0.001855	0	0
APOL6	80830	broad.mit.edu	37	22	36055215	36055215	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:36055215A>C	uc003aoe.2	+	3	898	c.604A>C	c.(604-606)AAG>CAG	p.K202Q	APOL6_uc003aod.2_RNA	NM_030641	NP_085144	Q9BWW8	APOL6_HUMAN	apolipoprotein L6	202					lipoprotein metabolic process	cytoplasm|extracellular region	lipid binding|lipid transporter activity				0						CAATGCTACCAAGCGTCTTCT	0.502			NA											21	45					0	0	0.010504	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120968	38120968	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:38120968G>T	uc003atr.2	+	7	2676	c.2405G>T	c.(2404-2406)AGA>ATA	p.R802I	TRIOBP_uc003atu.2_Missense_Mutation_p.R630I|TRIOBP_uc003atq.1_Missense_Mutation_p.R802I|TRIOBP_uc003ats.1_Missense_Mutation_p.R630I	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	802					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GACAATCTCAGAGCCTCCTCT	0.527			NA											26	40					1.55469e-16	2.49311e-16	0.00333	1	0
TRIOBP	11078	broad.mit.edu	37	22	38155203	38155203	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:38155203G>C	uc003atr.2	+	17	6527	c.6256G>C	c.(6256-6258)GGG>CGG	p.G2086R	TRIOBP_uc003atu.2_Missense_Mutation_p.G1914R|TRIOBP_uc003atv.2_Missense_Mutation_p.G373R|TRIOBP_uc003atw.2_Missense_Mutation_p.G373R|TRIOBP_uc003atx.1_5'UTR|TRIOBP_uc010gxh.2_5'UTR	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	2086	Potential.				actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GCGTCTCCAAGGGGAGGCTCC	0.652			NA											7	12					0	0	0.00308	0	0
TRIOBP	11078	broad.mit.edu	37	22	38168672	38168672	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:38168672G>T	uc003atr.2	+	23	7272	c.7001G>T	c.(7000-7002)CGG>CTG	p.R2334L	TRIOBP_uc003atu.2_Missense_Mutation_p.R2162L|TRIOBP_uc003atw.2_Missense_Mutation_p.R621L|TRIOBP_uc003atx.1_3'UTR|TRIOBP_uc010gxh.2_Missense_Mutation_p.R222L	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	2334	Potential.				actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ATCAAGACACGGTCTGAGCGG	0.607			NA											52	67					2.69774e-35	5.5116e-35	0.00361	1	0
GTPBP1	9567	broad.mit.edu	37	22	39125575	39125575	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:39125575G>T	uc003awg.2	+	11	1979	c.1825G>T	c.(1825-1827)GGT>TGT	p.G609C		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	609					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					GGGCCCGTCTGGTGGGCCAGC	0.607			NA											16	8					6.94344e-10	9.1297e-10	0.006122	1	0
CACNA1I	8911	broad.mit.edu	37	22	40060149	40060149	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:40060149C>A	uc003ayc.2	+	20	3651	c.3651C>A	c.(3649-3651)GGC>GGA	p.G1217G	CACNA1I_uc003ayd.2_Silent_p.G1182G|CACNA1I_uc003aye.2_Silent_p.G1132G|CACNA1I_uc003ayf.2_Silent_p.G1097G	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1217	Helical; Name=S2 of repeat III; (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TCTTCGTGGGCGAGATGACAT	0.612			NA											6	9					2.0095e-06	2.3649e-06	0.001984	1	0
EP300	2033	broad.mit.edu	37	22	41566409	41566409	+	Splice_Site	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:41566409G>C	uc003azl.3	+	27	4682	c.4287_splice	c.e27-1	p.G1429_splice		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300						apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						TGTATTGTTAGTTACACAACA	0.383			NA	T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybsyndrome				4	30					0	0	0.009096	0	0
RANGAP1	5905	broad.mit.edu	37	22	41652743	41652743	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:41652743G>A	uc003azs.2	-	7	2330	c.860C>T	c.(859-861)GCC>GTC	p.A287V	RANGAP1_uc003azt.2_Missense_Mutation_p.A287V|RANGAP1_uc003azu.2_Missense_Mutation_p.A287V|RANGAP1_uc011aoz.1_Missense_Mutation_p.A232V	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	287					mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						GCCGCGGATGGCATCTGCAAT	0.542			NA											9	19					0	0	0.004482	0	0
CCDC134	79879	broad.mit.edu	37	22	42204948	42204948	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:42204948G>T	uc003bbh.1	+	2	163	c.54G>T	c.(52-54)ATG>ATT	p.M18I	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|CCDC134_uc011apg.1_Missense_Mutation_p.M18I	NM_024821	NP_079097	Q9H6E4	CC134_HUMAN	coiled-coil domain containing 134 precursor	18						extracellular region				ovary(2)	2						TGTCTGGGATGGGAGCCACAG	0.483			NA											13	32					1.49906e-05	1.70773e-05	0.00245	1	0
UPK3A	7380	broad.mit.edu	37	22	45681845	45681845	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:45681845G>T	uc003bfy.2	+	2	82	c.76G>T	c.(76-78)GCC>TCC	p.A26S	UPK3A_uc010gzy.2_Missense_Mutation_p.A26S	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	26	Lumenal (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		GCCCCAACTGGCCAGTGTGAC	0.537			NA											15	13					0.000422831	0.000455111	0.004007	1	0
SMC1B	27127	broad.mit.edu	37	22	45745638	45745638	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:45745638C>A	uc003bgc.2	-	23	3518	c.3466G>T	c.(3466-3468)GCA>TCA	p.A1156S	SMC1B_uc003bgd.2_Intron	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	1156	Ala/Asp-rich (DA-box).				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TCTAGGGCTGCATCCACTTCA	0.338			NA											10	24					0.00829132	0.00865604	0.008291	1	0
TTC38	55020	broad.mit.edu	37	22	46685307	46685307	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:46685307G>T	uc003bhi.2	+	12	1167	c.1091G>T	c.(1090-1092)GGG>GTG	p.G364V	TTC38_uc011aqx.1_Missense_Mutation_p.G306V	NM_017931	NP_060401	Q5R3I4	TTC38_HUMAN	tetratricopeptide repeat domain 38	364							binding			ovary(1)	1						AGATCCCCAGGGGAGAACTGC	0.667			NA											8	17					0.000274275	0.000296559	0.004482	1	0
PLXNB2	23654	broad.mit.edu	37	22	50722093	50722093	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:50722093C>T	uc003bkv.3	-	15	2614	c.2508G>A	c.(2506-2508)CAG>CAA	p.Q836Q	PLXNB2_uc003bkt.1_5'Flank|PLXNB2_uc003bku.1_5'Flank	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	836	Extracellular (Potential).|IPT/TIG 1.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CAGAGATCCTCTGGATGTCCC	0.647			NA											9	20					0	0	0.004482	0	0
SETD5	55209	broad.mit.edu	37	3	9517764	9517764	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:9517764G>C	uc003brt.2	+	23	4753	c.4318G>C	c.(4318-4320)GGA>CGA	p.G1440R	SETD5_uc003bru.2_Missense_Mutation_p.G1342R|SETD5_uc003brv.2_Missense_Mutation_p.G1329R|SETD5_uc010hck.2_Missense_Mutation_p.G922R|SETD5_uc003brx.2_Missense_Mutation_p.G1109R	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	1440										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		GACTCAGACGGGACTTTCCTA	0.557			NA											12	0					0	0	0.000978	0	0
ATP2B2	491	broad.mit.edu	37	3	10392146	10392146	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:10392146C>A	uc003bvt.2	-	15	2691	c.2252G>T	c.(2251-2253)GGG>GTG	p.G751V	ATP2B2_uc003bvv.2_Missense_Mutation_p.G706V|ATP2B2_uc003bvw.2_Missense_Mutation_p.G706V|ATP2B2_uc010hdo.2_Missense_Mutation_p.G456V	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	751	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						AAAGTCCTCCCCAGGATGGAT	0.602	Ovarian(125;1619 1709 15675 19819 38835)		NA											25	7					1.66031e-10	2.23678e-10	0.003954	1	0
SYN2	6854	broad.mit.edu	37	3	12232106	12232106	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:12232106C>A	uc003bwm.2	+	17	1894	c.1730C>A	c.(1729-1731)GCC>GAC	p.A577D	SYN2_uc003bwn.2_Missense_Mutation_p.A251D	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	577					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AAGTCCTTTGCCAGCCTCTTT	0.527			NA											32	10					1.13719e-10	1.54814e-10	0.008361	1	0
FGD5	152273	broad.mit.edu	37	3	14861949	14861949	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:14861949C>A	uc003bzc.2	+	1	1481	c.1371C>A	c.(1369-1371)GGC>GGA	p.G457G	FGD5_uc011avk.1_Silent_p.G457G	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	457					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GTGGTTATGGCTCGAAAGAAG	0.647			NA											29	5					4.22769e-11	5.86768e-11	0.00632	1	0
FGD5	152273	broad.mit.edu	37	3	14862037	14862037	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:14862037G>T	uc003bzc.2	+	1	1569	c.1459G>T	c.(1459-1461)GGG>TGG	p.G487W	FGD5_uc011avk.1_Missense_Mutation_p.G487W	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	487					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GCCCCACTCTGGGAAGGTGGC	0.632			NA											32	7					3.11337e-16	4.95357e-16	0.002836	1	0
GALNTL2	117248	broad.mit.edu	37	3	16242201	16242201	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:16242201T>A	uc003car.3	+	3	1257	c.782T>A	c.(781-783)CTG>CAG	p.L261Q	GALNTL2_uc003caq.3_5'UTR	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	261	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						AACAAGAGGCTGGGTGCCATC	0.612			NA											22	12					0	0	0.001882	0	0
NEK10	152110	broad.mit.edu	37	3	27216141	27216141	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:27216141C>A	uc010hfk.2	-	6	854	c.625G>T	c.(625-627)GAT>TAT	p.D209Y	NEK10_uc003cds.1_Missense_Mutation_p.D294Y|NEK10_uc010hfj.2_Missense_Mutation_p.D209Y			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	897							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						CTAGCAGTACCTTTCTCAGCA	0.478			NA											50	10					7.34454e-26	1.38709e-25	0.00361	1	0
EOMES	8320	broad.mit.edu	37	3	27759079	27759079	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:27759079G>T	uc003cdx.2	-	6	1543	c.1543C>A	c.(1543-1545)CCC>ACC	p.P515T	EOMES_uc003cdy.3_Missense_Mutation_p.P534T|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Missense_Mutation_p.P239T	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	515					CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						CACCGCTGGGGAGGGTTGGCC	0.522			NA											54	14					4.6707e-30	9.21202e-30	0.00361	1	0
SCN5A	6331	broad.mit.edu	37	3	38603945	38603945	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:38603945G>T	uc003cio.2	-	22	4118	c.3924C>A	c.(3922-3924)CTC>CTA	p.L1308L	SCN5A_uc003cin.2_Silent_p.L1307L|SCN5A_uc003cil.3_Silent_p.L1308L|SCN5A_uc010hhi.2_Silent_p.L1308L|SCN5A_uc010hhk.2_Silent_p.L1307L|SCN5A_uc011ayr.1_Silent_p.L1254L|SCN5A_uc010hhj.1_Silent_p.L918L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1308	Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCAGAGGACGGAGTGCACGCA	0.637			NA											10	0					7.48243e-07	8.9163e-07	0.006214	1	0
CCDC13	152206	broad.mit.edu	37	3	42754701	42754701	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:42754701G>T	uc003cly.3	-	14	1910	c.1826C>A	c.(1825-1827)CCA>CAA	p.P609Q		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	609										ovary(1)	1						TGCCTTCCCTGGCTCCAGGCG	0.493			NA											22	7					2.89027e-11	4.02321e-11	0.002299	1	0
CCR5	1234	broad.mit.edu	37	3	46414426	46414426	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:46414426C>T	uc003cpo.3	+	3	155	c.33C>T	c.(31-33)GAC>GAT	p.D11D	CCR5_uc010hjd.2_Silent_p.D11D	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	11	Extracellular (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	CAATCTATGACATCAATTATT	0.408			NA											42	21					0	0	0.00361	0	0
PTH1R	5745	broad.mit.edu	37	3	46935439	46935439	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:46935439C>T	uc003cqm.2	+	4	321	c.118C>T	c.(118-120)CTG>TTG	p.L40L	PTH1R_uc003cqn.2_Silent_p.L40L	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	40	Extracellular (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						ACAGATCTTCCTGCTGCACCG	0.597			NA							Ollier_disease_/_Maffucsyndrome				17	5					0	0	0.006122	0	0
CELSR3	1951	broad.mit.edu	37	3	48689956	48689956	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:48689956C>A	uc003cul.2	-	11	5946	c.5665G>T	c.(5665-5667)GGC>TGC	p.G1889C	CELSR3_uc003cuf.1_Missense_Mutation_p.G1959C|CELSR3_uc010hkg.2_5'Flank	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1889	Extracellular (Potential).|Laminin G-like 2.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACCTTCAGGCCCTGCAGCTCA	0.647			NA											10	7					0.000442599	0.000474237	0.006214	1	0
USP19	10869	broad.mit.edu	37	3	49153219	49153219	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:49153219T>A	uc003cwd.1	-	10	1482	c.1321A>T	c.(1321-1323)AGT>TGT	p.S441C	USP19_uc003cwa.2_Missense_Mutation_p.S249C|USP19_uc003cvz.3_Missense_Mutation_p.S544C|USP19_uc011bcg.1_Missense_Mutation_p.S532C|USP19_uc003cwb.2_Missense_Mutation_p.S527C|USP19_uc003cwc.1_Missense_Mutation_p.S199C|USP19_uc011bch.1_Missense_Mutation_p.S542C|USP19_uc011bci.1_Missense_Mutation_p.S529C	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	441	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTTGCCACACTGTCTAGCCCT	0.612			NA											12	3					0	0	0.000978	0	0
LAMB2	3913	broad.mit.edu	37	3	49167053	49167053	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:49167053C>A	uc003cwe.2	-	11	1801	c.1502G>T	c.(1501-1503)GGA>GTA	p.G501V	LAMB2_uc003cwf.1_Missense_Mutation_p.G501V	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	501	Laminin EGF-like 4.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GCGGTCACATCCACGTCCAGT	0.567			NA											8	2					5.18039e-06	6.01703e-06	0.00308	1	0
BSN	8927	broad.mit.edu	37	3	49698459	49698459	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:49698459C>T	uc003cxe.3	+	6	9295	c.9181C>T	c.(9181-9183)CCA>TCA	p.P3061S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3061					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GCCTCCAGCCCCACAGTATTC	0.667			NA											14	3					0	0	0.001855	0	0
FOXP1	27086	broad.mit.edu	37	3	71064794	71064794	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:71064794C>T	uc003dol.2	-	8	1203	c.880G>A	c.(880-882)GAG>AAG	p.E294K	FOXP1_uc003dom.2_Missense_Mutation_p.E218K|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.E294K|FOXP1_uc003dop.2_Missense_Mutation_p.E294K|FOXP1_uc003doq.1_Missense_Mutation_p.E293K|FOXP1_uc003doi.2_Missense_Mutation_p.E194K|FOXP1_uc003doj.2_Missense_Mutation_p.E194K|FOXP1_uc003dok.2_Missense_Mutation_p.E107K|FOXP1_uc003dor.1_Missense_Mutation_p.E72K	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	294					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		GGGTGCTCCTCATGGGACAAA	0.473			NA	T	PAX5	ALL								18	5					0	0	0.00499	0	0
CNTN3	5067	broad.mit.edu	37	3	74350699	74350699	+	Splice_Site	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:74350699C>A	uc003dpm.1	-	15	2026	c.1946_splice	c.e15-1	p.V649_splice		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor						cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		ACCTCAGGCACTACAAAGGAA	0.438			NA											27	9					4.22769e-11	5.86768e-11	0.00632	1	0
OR5AC2	81050	broad.mit.edu	37	3	97806084	97806084	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:97806084C>A	uc011bgs.1	+	1	68	c.68C>A	c.(67-69)CCA>CAA	p.P23Q		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGATCGACCATGGCTGCAC	0.423			NA											140	20					8.22345e-67	1.76891e-66	0.00361	1	0
OR5K4	403278	broad.mit.edu	37	3	98072932	98072932	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:98072932C>A	uc011bgv.1	+	1	235	c.235C>A	c.(235-237)CCC>ACC	p.P79T		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TGCTGTTACCCCCAAGATGTT	0.418			NA											298	32					5.49051e-137	1.201e-136	0.00361	1	0
OR5K4	403278	broad.mit.edu	37	3	98073254	98073254	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:98073254G>T	uc011bgv.1	+	1	557	c.557G>T	c.(556-558)AGA>ATA	p.R186I		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CCACTGTATAGACTCTCCTGT	0.328			NA											74	7					1.93348e-29	3.80286e-29	0.00361	1	0
OR5K1	26339	broad.mit.edu	37	3	98189183	98189183	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:98189183C>T	uc003dsm.2	+	1	763	c.763C>T	c.(763-765)CTT>TTT	p.L255F		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						CTATGGATCTCTTTTCTTCAT	0.343			NA											84	7					0	0	0.00361	0	0
TRAT1	50852	broad.mit.edu	37	3	108549564	108549564	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:108549564G>T	uc003dxi.1	+	2	199	c.55G>T	c.(55-57)GGC>TGC	p.G19C	TRAT1_uc010hpx.1_Intron	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	19	Helical; Signal-anchor for type III membrane protein; (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						AGCATTGTTGGGCTTGGCTTT	0.388			NA											90	16					1.14069e-49	2.41e-49	0.00361	1	0
ABHD10	55347	broad.mit.edu	37	3	111705160	111705160	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:111705160A>T	uc003dyk.3	+	3	457	c.376A>T	c.(376-378)ACA>TCA	p.T126S	ABHD10_uc011bhq.1_5'UTR	NM_018394	NP_060864	Q9NUJ1	ABHDA_HUMAN	abhydrolase domain containing 10 precursor	126						mitochondrion	serine-type peptidase activity				0						AGAGGAAAGCACACTGGGGAA	0.358			NA											29	3					0	0	0.009535	0	0
C3orf15	89876	broad.mit.edu	37	3	119451224	119451224	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:119451224G>T	uc003ede.3	+	9	1179	c.1102G>T	c.(1102-1104)GCA>TCA	p.A368S	C3orf15_uc010hqy.1_Missense_Mutation_p.A368S|C3orf15_uc010hqz.2_Missense_Mutation_p.A306S|C3orf15_uc011bjd.1_Missense_Mutation_p.A242S|C3orf15_uc011bje.1_Missense_Mutation_p.A348S|C3orf15_uc010hra.1_Missense_Mutation_p.A129S	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	531						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		TTCTGATTATGCATCACAGGT	0.378			NA											72	7					3.94896e-32	7.89793e-32	0.00361	1	0
ITGB5	3693	broad.mit.edu	37	3	124578287	124578287	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:124578287C>A	uc003eho.2	-	3	460	c.163G>T	c.(163-165)GGA>TGA	p.G55*		NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	55	Extracellular (Potential).|PSI.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		CGTGGGCTTCCGAAGTCCTAG	0.547			NA											35	19					6.29468e-14	9.44534e-14	0.004878	1	0
PLXNA1	5361	broad.mit.edu	37	3	126751248	126751248	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:126751248G>T	uc003ejg.2	+	29	5185	c.5181G>T	c.(5179-5181)TGG>TGT	p.W1727C	PLXNA1_uc003ejh.2_Missense_Mutation_p.W395C	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1750	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		TGCGCTTCTGGGTGAACGTGA	0.597			NA											66	6					5.45122e-27	1.04758e-26	0.00361	1	0
TPRA1	131601	broad.mit.edu	37	3	127294893	127294893	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:127294893C>A	uc003ejl.2	-	6	790	c.499G>T	c.(499-501)GGG>TGG	p.G167W	TPRA1_uc003ejm.2_RNA|TPRA1_uc003ejo.2_Missense_Mutation_p.G167W|TPRA1_uc010hsk.2_Missense_Mutation_p.G167W|TPRA1_uc003ejn.2_Missense_Mutation_p.G167W	NM_016372	NP_057456	Q86W33	TPRA1_HUMAN	G protein-coupled receptor 175 isoform 1	167	Helical; Name=4; (Potential).				aging|lipid metabolic process	integral to membrane	G-protein coupled receptor activity				0						TCCAGGGTCCCCTGCAGGGGC	0.587			NA											23	20					1.28384e-07	1.56122e-07	0.001882	1	0
SEC61A1	29927	broad.mit.edu	37	3	127786902	127786902	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:127786902G>T	uc003ekb.2	+	11	1428	c.1244G>T	c.(1243-1245)CGG>CTG	p.R415L	RUVBL1_uc003eke.2_Intron|RUVBL1_uc003ekf.2_Intron|SEC61A1_uc003ekc.2_Missense_Mutation_p.R362L|SEC61A1_uc003ekd.2_Missense_Mutation_p.R295L|SEC61A1_uc003ekg.2_Missense_Mutation_p.R109L	NM_013336	NP_037468	P61619	S61A1_HUMAN	Sec61 alpha 1 subunit	415	Cytoplasmic (Potential).				protein targeting to ER	integral to endoplasmic reticulum membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|protein binding|ribosome binding			ovary(1)	1						GAACTCAACCGGTGAGTGGTG	0.577			NA									OREG0015775	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	44					1.99824e-07	2.41963e-07	0.00499	1	0
ATP2C1	27032	broad.mit.edu	37	3	130698177	130698177	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:130698177T>C	uc003enl.2	+	19	1877	c.1655T>C	c.(1654-1656)GTG>GCG	p.V552A	ATP2C1_uc011blg.1_Missense_Mutation_p.V586A|ATP2C1_uc011blh.1_Missense_Mutation_p.V547A|ATP2C1_uc011bli.1_Missense_Mutation_p.V586A|ATP2C1_uc003enk.2_Missense_Mutation_p.V536A|ATP2C1_uc003enm.2_Missense_Mutation_p.V552A|ATP2C1_uc003enn.2_Missense_Mutation_p.V536A|ATP2C1_uc003eno.2_Missense_Mutation_p.V552A|ATP2C1_uc003enp.2_Missense_Mutation_p.V552A|ATP2C1_uc003enq.2_Missense_Mutation_p.V552A|ATP2C1_uc003enr.2_Missense_Mutation_p.V552A|ATP2C1_uc003ens.2_Missense_Mutation_p.V552A|ATP2C1_uc003ent.2_Missense_Mutation_p.V552A|ATP2C1_uc003enu.2_Missense_Mutation_p.V230A	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	552	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	AGAACTGGTGTGAAAGAAGCT	0.418	Esophageal Squamous(99;456 1443 27647 34099 42636)		NA							Hailey-Hailey_disease				77	12					0	0	0.00361	0	0
CLSTN2	64084	broad.mit.edu	37	3	139894870	139894870	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:139894870C>A	uc003etn.2	+	2	377	c.187C>A	c.(187-189)CCA>ACA	p.P63T	CLSTN2_uc003etm.2_Missense_Mutation_p.P63T	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	63	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CATTTTGGACCCACCACTGGT	0.463	GBM(45;858 913 3709 36904 37282)		NA								HNSCC(16;0.037)			40	6					1.96642e-18	3.31775e-18	0.006999	1	0
ZIC1	7545	broad.mit.edu	37	3	147128676	147128676	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:147128676G>T	uc003ewe.2	+	1	1496	c.777G>T	c.(775-777)GAG>GAT	p.E259D		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	259	C2H2-type 1; atypical.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TCACCGTGGAGCACGTAGGTG	0.552			NA											66	5					3.13296e-38	6.46571e-38	0.00361	1	0
MED12L	116931	broad.mit.edu	37	3	151148145	151148145	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:151148145G>T	uc003eyp.2	+	42	6400	c.6362G>T	c.(6361-6363)CGG>CTG	p.R2121L	MED12L_uc011bnz.1_Missense_Mutation_p.R1785L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2121	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCCTTGGTGCGGCAGCTCCAG	0.537			NA											60	7					1.72039e-30	3.40255e-30	0.00361	1	0
GPR149	344758	broad.mit.edu	37	3	154146871	154146871	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:154146871C>A	uc003faa.2	-	1	634	c.534G>T	c.(532-534)ACG>ACT	p.T178T		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	178	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			AGCCCCAGGGCGTGCGCACGA	0.667			NA											18	28					5.01169e-05	5.58424e-05	0.00499	1	0
SLITRK3	22865	broad.mit.edu	37	3	164906124	164906124	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:164906124G>A	uc003fej.3	-	2	2939	c.2495C>T	c.(2494-2496)ACG>ATG	p.T832M	SLITRK3_uc003fek.2_Missense_Mutation_p.T832M	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	832	Cytoplasmic (Potential).					integral to membrane		p.T832M(1)		ovary(6)|skin(3)|pancreas(1)	10						GTGATTCACCGTCACTATGGT	0.552			NA								HNSCC(40;0.11)			18	82					0	0	0.00499	0	0
SERPINI1	5274	broad.mit.edu	37	3	167507133	167507133	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:167507133C>T	uc003ffa.3	+	2	415	c.217C>T	c.(217-219)CGC>TGC	p.R73C	SERPINI1_uc003ffb.3_Missense_Mutation_p.R73C	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	73					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						GAAAGAAATCCGCCACTCAAT	0.398			NA											13	26					0	0	0.001855	0	0
LIPH	200879	broad.mit.edu	37	3	185241924	185241925	+	Missense_Mutation	DNP	CC	CC	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:185241924_185241925CC>AT	uc003fpm.2	-	5	762_763	c.652_653GG>AT	c.(652-654)GGA>ATA	p.G218I	LIPH_uc010hyh.2_Missense_Mutation_p.G184I	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	218					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GTCTATGTTTCCTAATGGCTCC	0.391			NA											5	43					0	0	0.004672	0	0
DGKG	1608	broad.mit.edu	37	3	185983091	185983091	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:185983091C>T	uc003fqa.2	-	14	1751	c.1214G>A	c.(1213-1215)AGG>AAG	p.R405K	DGKG_uc003fqb.2_Missense_Mutation_p.R366K|DGKG_uc003fqc.2_Missense_Mutation_p.R405K|DGKG_uc011brx.1_Intron	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	405					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	CTCACCTGGCCTGTCCTGTGA	0.448			NA											11	28					0	0	0.000978	0	0
LRRC15	131578	broad.mit.edu	37	3	194080366	194080366	+	Silent	SNP	G	G	A	rs140618656	by1000genomes	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:194080366G>A	uc003ftu.2	-	2	1493	c.1407C>T	c.(1405-1407)GTC>GTT	p.V469V	LRRC15_uc003ftt.2_Silent_p.V475V	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	469	LRRCT.|Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CAGCAACGTTGACATTGATGA	0.547			NA											27	1					0	0	0.005443	0	0
RGS12	6002	broad.mit.edu	37	4	3432304	3432304	+	Missense_Mutation	SNP	G	G	C	rs150739035		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:3432304G>C	uc003ggw.2	+	17	4640	c.3736G>C	c.(3736-3738)GCC>CCC	p.A1246P	RGS12_uc003ggv.2_Missense_Mutation_p.A1246P|RGS12_uc003ggy.1_3'UTR|RGS12_uc003ggz.2_Missense_Mutation_p.A598P|RGS12_uc011bvs.1_3'UTR|RGS12_uc003gha.2_Missense_Mutation_p.A588P|RGS12_uc010icv.2_Missense_Mutation_p.A445P	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	1246						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CAAGAGAAGCGCCACAGGCAA	0.652			NA											12	5					0	0	0.000978	0	0
LRPAP1	4043	broad.mit.edu	37	4	3521898	3521898	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:3521898C>T	uc003ghi.2	-	3	457	c.372G>A	c.(370-372)CTG>CTA	p.L124L		NM_002337	NP_002328	P30533	AMRP_HUMAN	low density lipoprotein receptor-related protein	124					negative regulation of protein binding|negative regulation of very-low-density lipoprotein particle clearance|protein folding|vesicle-mediated transport	cell surface|integral to membrane|plasma membrane	asialoglycoprotein receptor activity|heparin binding|low-density lipoprotein particle receptor binding|receptor antagonist activity|unfolded protein binding|very-low-density lipoprotein particle receptor binding			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.165)		TCTTTCCGTCCAGACCATACT	0.542			NA											5	27					0	0	0.000602	0	0
SLC2A9	56606	broad.mit.edu	37	4	9922190	9922190	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:9922190T>C	uc003gmc.2	-	7	882	c.821A>G	c.(820-822)CAA>CGA	p.Q274R	SLC2A9_uc003gmd.2_Missense_Mutation_p.Q245R	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	274	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						CAAGAACGTTTGGAAGGCTGC	0.582			NA											6	5					0	0	0.001168	0	0
CD38	952	broad.mit.edu	37	4	15841733	15841733	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:15841733A>G	uc011bxc.1	+	6	851	c.744A>G	c.(742-744)GAA>GAG	p.E248E	CD38_uc003gol.1_Silent_p.E248E	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	248	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						GTGGAAGAGAAGATTCCAGGT	0.413			NA											50	9					0	0	0.00361	0	0
KLF3	51274	broad.mit.edu	37	4	38698816	38698816	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:38698816G>A	uc003gth.3	+	6	1302	c.970G>A	c.(970-972)GAC>AAC	p.D324N		NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	324	C2H2-type 3.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						CCAGTGCCCGGACTGTGACCG	0.512			NA											44	12					0	0	0.003214	0	0
GABRG1	2565	broad.mit.edu	37	4	46066481	46066481	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:46066481G>T	uc003gxb.2	-	5	754	c.602C>A	c.(601-603)TCC>TAC	p.S201Y		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	201	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CAGTGGACAGGAATGTTCATC	0.269			NA											22	11					1.85244e-09	2.40244e-09	0.00333	1	0
PDGFRA	5156	broad.mit.edu	37	4	55133888	55133888	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:55133888G>A	uc003han.3	+	7	1432	c.1101G>A	c.(1099-1101)GTG>GTA	p.V367V	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Silent_p.V261V|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	367	Ig-like C2-type 4.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CCACTGATGTGGAAAAGATTC	0.443	Pancreas(151;208 1913 7310 23853 37092)		NA	Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			9	4					0	0	0.006214	0	0
UBA6	55236	broad.mit.edu	37	4	68539437	68539437	+	Missense_Mutation	SNP	C	C	T	rs147806141	byFrequency	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:68539437C>T	uc003hdg.3	-	7	576	c.524G>A	c.(523-525)CGT>CAT	p.R175H	UBA6_uc003hdi.2_Missense_Mutation_p.R175H|UBA6_uc003hdj.2_Missense_Mutation_p.R175H	NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	175					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						GCACTGAGAACGGCAAAAGTC	0.318			NA											46	8					0	0	0.00361	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885519	69885519	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:69885519G>T	uc011cao.1	-	4	606	c.470C>A	c.(469-471)CCT>CAT	p.P157H	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	194					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CATAACAACAGGTACGTAGGA	0.378	Melanoma(133;755 1763 25578 26334 46021)		NA											42	13					7.63091e-17	1.23342e-16	0.007835	1	0
CSN1S1	1446	broad.mit.edu	37	4	70799955	70799955	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:70799955G>C	uc003hep.1	+	3	126	c.77G>C	c.(76-78)CGC>CCC	p.R26P	CSN1S1_uc003heq.1_Missense_Mutation_p.R26P|CSN1S1_uc003her.1_Missense_Mutation_p.R26P	NM_001890	NP_001881	P47710	CASA1_HUMAN	casein alpha s1 isoform 1	26						extracellular region	protein binding|transporter activity				0						TACCCAGAACGCCTTCAGGTA	0.338			NA											21	6					0	0	0.00333	0	0
HTN1	3346	broad.mit.edu	37	4	70921224	70921224	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:70921224C>A	uc003hex.2	+	5	179	c.112C>A	c.(112-114)CAT>AAT	p.H38N		NM_002159	NP_002150	P15515	HIS1_HUMAN	histatin 1 precursor	38					biomineral tissue development|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			skin(1)	1						GGAAAAGCATCATTCACATCG	0.338			NA											7	2					8.12818e-05	8.99342e-05	0.001984	1	0
ANKRD17	26057	broad.mit.edu	37	4	73979623	73979623	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:73979623C>A	uc003hgp.2	-	24	4404	c.4287G>T	c.(4285-4287)GAG>GAT	p.E1429D	ANKRD17_uc003hgo.2_Missense_Mutation_p.E1316D|ANKRD17_uc003hgq.2_Missense_Mutation_p.E1178D|ANKRD17_uc003hgr.2_Missense_Mutation_p.E1428D|ANKRD17_uc011cbd.1_Missense_Mutation_p.E994D	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1429					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TCTTCAGCATCTCCTATAATG	0.368			NA											44	9					5.20837e-25	9.75884e-25	0.00874	1	0
PPEF2	5470	broad.mit.edu	37	4	76817470	76817470	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:76817470G>T	uc003hix.2	-	2	366	c.9C>A	c.(7-9)AGC>AGA	p.S3R	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.S3R	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	3					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGGAGGTGCCGCTTCCCATAG	0.488	NSCLC(105;1359 1603 15961 44567 47947)		NA									OREG0016229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	38	7					3.38236e-24	6.27963e-24	0.006999	1	0
GK2	2712	broad.mit.edu	37	4	80329142	80329142	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:80329142C>A	uc003hlu.2	-	1	231	c.213G>T	c.(211-213)ACG>ACT	p.T71T		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	71					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GTTTCTCACACGTTCTCGCTA	0.403			NA											73	16					1.1397e-45	2.39371e-45	0.00361	1	0
HNRPDL	9987	broad.mit.edu	37	4	83350672	83350672	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:83350672G>A	uc003hmr.2	-	1	707	c.172C>T	c.(172-174)CAG>TAG	p.Q58*	ENOPH1_uc003hmv.2_5'Flank|ENOPH1_uc003hmw.2_5'Flank|ENOPH1_uc003hmx.2_5'Flank|HNRPDL_uc003hmq.2_RNA|HNRPDL_uc003hms.2_RNA|HNRPDL_uc003hmt.2_Nonsense_Mutation_p.Q58*	NM_031372	NP_112740	O14979	HNRDL_HUMAN	heterogeneous nuclear ribonucleoprotein D-like	58					regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|heterogeneous nuclear ribonucleoprotein complex	double-stranded DNA binding|nucleotide binding|poly(A) RNA binding|protein binding|single-stranded DNA binding			skin(1)	1		Hepatocellular(203;0.114)				ACGTGGCGCTGGGCCCGGCGC	0.657			NA											7	0					0	0	0.00308	0	0
MEPE	56955	broad.mit.edu	37	4	88766836	88766836	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:88766836T>A	uc003hqy.2	+	4	855	c.816T>A	c.(814-816)ACT>ACA	p.T272T	MEPE_uc010ikn.2_Silent_p.T159T	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	272					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		GAGAAGCTACTGGTCCTGACC	0.448			NA											25	7					0	0	0.004656	0	0
ADH5	128	broad.mit.edu	37	4	100002601	100002601	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:100002601C>A	uc003hui.2	-	4	339	c.259G>T	c.(259-261)GAC>TAC	p.D87Y	ADH5_uc003huk.1_Missense_Mutation_p.D87Y|ADH5_uc003huj.2_5'UTR	NM_000671	NP_000662	P11766	ADHX_HUMAN	class III alcohol dehydrogenase, chi subunit	87					ethanol oxidation|response to redox state		alcohol dehydrogenase (NAD) activity|electron carrier activity|fatty acid binding|formaldehyde dehydrogenase activity|S-(hydroxymethyl)glutathione dehydrogenase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;2.5e-07)	NADH(DB00157)	ATGACAGTGTCACCTGGAAAC	0.378			NA											10	1					3.86212e-05	4.31346e-05	0.008291	1	0
PITX2	5308	broad.mit.edu	37	4	111553593	111553593	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:111553593G>T	uc003iad.2	-	3	672	c.90C>A	c.(88-90)TCC>TCA	p.S30S	PITX2_uc003iae.2_Intron|PITX2_uc010iml.2_5'UTR|PITX2_uc003iaf.2_Silent_p.S30S	NM_153426	NP_700475	Q99697	PITX2_HUMAN	paired-like homeodomain transcription factor 2	30					determination of left/right symmetry|organ morphogenesis	transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription factor binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00222)		TTTTGATTTCGGAGTCTTTGG	0.652			NA											34	5					2.19358e-23	4.04095e-23	0.005524	1	0
ANK2	287	broad.mit.edu	37	4	114290745	114290745	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:114290745T>A	uc003ibe.3	+	43	11494	c.11394T>A	c.(11392-11394)CCT>CCA	p.P3798P	ANK2_uc003ibd.3_Silent_p.P1704P|ANK2_uc003ibf.3_Silent_p.P1713P|ANK2_uc011cgc.1_Silent_p.P889P|ANK2_uc003ibg.3_Silent_p.P697P|ANK2_uc003ibh.3_Silent_p.P387P|ANK2_uc011cgd.1_Silent_p.P1100P	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3765					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GCAAGACACCTGAGGAAGTTA	0.527			NA											24	11					0	0	0.00278	0	0
PCDH18	54510	broad.mit.edu	37	4	138442648	138442648	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:138442648C>G	uc003ihe.3	-	4	3330	c.2943G>C	c.(2941-2943)AAG>AAC	p.K981N	PCDH18_uc003ihf.3_Missense_Mutation_p.K973N|PCDH18_uc011cgz.1_Missense_Mutation_p.K192N|PCDH18_uc003ihg.3_Missense_Mutation_p.K760N|PCDH18_uc011cha.1_Missense_Mutation_p.K161N	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	981	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGGAAAAACTCTTCTTCTTTT	0.517			NA											30	8					0	0	0.008361	0	0
INPP4B	8821	broad.mit.edu	37	4	143033733	143033733	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:143033733A>G	uc003iix.3	-	23	2833	c.2238T>C	c.(2236-2238)TTT>TTC	p.F746F	INPP4B_uc003iiw.3_Silent_p.F746F|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Silent_p.F561F|INPP4B_uc011cho.1_RNA	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	746					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					TTCCAACATTAAAAAGTACTG	0.388			NA											51	7					0	0	0.00361	0	0
SMARCA5	8467	broad.mit.edu	37	4	144469250	144469250	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:144469250C>T	uc003ijg.2	+	22	3404	c.2942C>T	c.(2941-2943)CCT>CTT	p.P981L		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	981	SANT 2.				CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					CGCAACTCTCCTCAGTTCAGA	0.383			NA											17	4					0	0	0.006122	0	0
LRBA	987	broad.mit.edu	37	4	151770033	151770033	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:151770033T>A	uc010ipj.2	-	26	4750	c.4276A>T	c.(4276-4278)ACT>TCT	p.T1426S	LRBA_uc003ilt.3_Missense_Mutation_p.T85S|LRBA_uc003ilu.3_Missense_Mutation_p.T1426S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1426						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCAATTTCAGTAAAGCCAAGA	0.403			NA											43	8					0	0	0.002852	0	0
NPY2R	4887	broad.mit.edu	37	4	156135158	156135158	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:156135158G>T	uc003ioq.2	+	2	562	c.67G>T	c.(67-69)GGG>TGG	p.G23W	NPY2R_uc003ior.2_Missense_Mutation_p.G23W	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	23	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GGAACAATACGGGCCACAAAC	0.488			NA											39	3					9.8876e-21	1.74257e-20	0.004878	1	0
NPY1R	4886	broad.mit.edu	37	4	164246718	164246718	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:164246718G>C	uc003iqm.1	-	3	1158	c.892C>G	c.(892-894)CAC>GAC	p.H298D	NPY1R_uc011cjj.1_Missense_Mutation_p.H55D	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	298	Extracellular (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AACAGATTGTGGTTGCAGGTA	0.443			NA											27	6					0	0	0.004656	0	0
TKTL2	84076	broad.mit.edu	37	4	164393480	164393480	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:164393480C>A	uc003iqp.3	-	1	1568	c.1407G>T	c.(1405-1407)AAG>AAT	p.K469N		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	469						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AGCACATTCCCTTGGTATTGG	0.468			NA											52	7					1.34479e-40	2.80377e-40	0.00361	1	0
CPE	1363	broad.mit.edu	37	4	166300615	166300615	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:166300615G>C	uc003irg.3	+	1	519	c.242G>C	c.(241-243)CGC>CCC	p.R81P		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	81					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACGGTGGGGCGCAGCTTCGAG	0.672			NA											4	4					0	0	0.009096	0	0
DDX60L	91351	broad.mit.edu	37	4	169312708	169312708	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:169312708C>A	uc003irq.3	-	29	4119	c.3898G>T	c.(3898-3900)GCT>TCT	p.A1300S	DDX60L_uc003irr.1_Missense_Mutation_p.A1301S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1300	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TAATTTAAAGCATCCAGATAG	0.413			NA											9	0					1.12685e-05	1.28783e-05	0.004482	1	0
PALLD	23022	broad.mit.edu	37	4	169589501	169589501	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:169589501G>T	uc011cjx.1	+	3	1280	c.1069G>T	c.(1069-1071)GCT>TCT	p.A357S	PALLD_uc003iru.2_Missense_Mutation_p.A357S|PALLD_uc003irv.2_5'UTR	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	357	Ig-like C2-type 1.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CACAACATCTGCTGAGGTGTT	0.527	Esophageal Squamous(109;1482 1532 18347 40239 51172)		NA							Pancreatic_Cancer_Familial_Clustering_of				37	14					1.96642e-18	3.31775e-18	0.006999	1	0
WDR17	116966	broad.mit.edu	37	4	177083325	177083325	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:177083325G>T	uc003iuj.2	+	22	3078	c.2922G>T	c.(2920-2922)GAG>GAT	p.E974D	WDR17_uc003iuk.2_Missense_Mutation_p.E950D|WDR17_uc003ium.3_Missense_Mutation_p.E950D|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.E193D	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	974										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		ATAATATTGAGGTACGACATT	0.383			NA											11	3					9.70103e-10	1.27086e-09	0.008291	1	0
ACSL1	2180	broad.mit.edu	37	4	185681540	185681540	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:185681540G>A	uc003iww.2	-	18	2047	c.1753C>T	c.(1753-1755)CAG>TAG	p.Q585*	ACSL1_uc011ckm.1_Nonsense_Mutation_p.Q414*|ACSL1_uc003iwt.1_Nonsense_Mutation_p.Q585*|ACSL1_uc003iwu.1_Nonsense_Mutation_p.Q585*|ACSL1_uc011ckn.1_Nonsense_Mutation_p.Q551*|ACSL1_uc003iws.1_Nonsense_Mutation_p.Q145*	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	585	Cytoplasmic (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	ACAAACACCTGAGCAACAGGC	0.448			NA											160	35					0	0	0.00361	0	0
FAT1	2195	broad.mit.edu	37	4	187518259	187518259	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:187518259C>A	uc003izf.2	-	25	12623	c.12435G>T	c.(12433-12435)ACG>ACT	p.T4145T	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_Silent_p.T36T	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4145	Extracellular (Potential).|EGF-like 5; calcium-binding (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AGGAGCCGTGCGTGTTCTCAC	0.582	Colon(197;1040 2055 4143 4984 49344)		NA								HNSCC(5;0.00058)			17	4					2.48551e-13	3.66014e-13	0.00499	1	0
FRG1	2483	broad.mit.edu	37	4	190876296	190876296	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:190876296T>A	uc003izs.2	+	5	613	c.422T>A	c.(421-423)GTC>GAC	p.V141D		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	141					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		TGGGAACCAGTCTTTCAAAAT	0.343			NA											7	64					0	0	0.006214	0	0
FRG1	2483	broad.mit.edu	37	4	190882991	190882991	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:190882991G>T	uc003izs.2	+	8	835	c.644G>T	c.(643-645)AGC>ATC	p.S215I		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	215					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		AAATTTCAGAGCTTCCAAGAC	0.294			NA											69	15					2.42712e-22	4.39164e-22	0.00361	1	0
SLC6A18	348932	broad.mit.edu	37	5	1232936	1232936	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:1232936G>T	uc003jby.1	+	3	495	c.372G>T	c.(370-372)TGG>TGT	p.W124C		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	124	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGGTGCTGTGGTACCTCCTCA	0.642			NA											23	27					6.21321e-17	1.00885e-16	0.00278	1	0
C5orf38	153571	broad.mit.edu	37	5	2752838	2752838	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:2752838G>T	uc003jdc.2	+	2	420	c.303G>T	c.(301-303)AGG>AGT	p.R101S	C5orf38_uc011cmg.1_Missense_Mutation_p.R101S|C5orf38_uc011cmh.1_RNA|C5orf38_uc011cmi.1_RNA|C5orf38_uc011cmj.1_Intron	NM_178569	NP_848664	Q86SI9	CEI_HUMAN	hypothetical protein LOC153571 precursor	101						extracellular region					0				GBM - Glioblastoma multiforme(108;0.205)		AGGAGCTCAGGTTGGCGCCGC	0.627			NA											18	45					9.16793e-09	1.15737e-08	0.00499	1	0
IRX1	79192	broad.mit.edu	37	5	3599475	3599475	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:3599475G>T	uc003jde.2	+	2	465	c.413G>T	c.(412-414)AGC>ATC	p.S138I		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	138	Homeobox; TALE-type.			S -> N (in Ref. 2; AAB50005).		nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						ACCCGCGAGAGCACCAGCACG	0.647			NA											19	32					1.01871e-10	1.38951e-10	0.008871	1	0
NSUN2	54888	broad.mit.edu	37	5	6625754	6625754	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:6625754T>C	uc003jdu.2	-	4	453	c.388A>G	c.(388-390)AAT>GAT	p.N130D	NSUN2_uc011cmk.1_Missense_Mutation_p.N95D|NSUN2_uc003jdv.2_5'UTR	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	130						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						CGACTTAAATTTGTGTGCCAG	0.343			NA											13	17					0	0	0.001855	0	0
SRD5A1	6715	broad.mit.edu	37	5	6633888	6633888	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:6633888C>G	uc003jdw.2	+	1	389	c.199C>G	c.(199-201)CCG>GCG	p.P67A	NSUN2_uc003jdu.2_5'Flank|NSUN2_uc011cmk.1_5'Flank|NSUN2_uc003jdv.2_5'Flank|SRD5A1_uc011cml.1_RNA|SRD5A1_uc011cmm.1_Missense_Mutation_p.C75W	NM_001047	NP_001038	P18405	S5A1_HUMAN	steroid-5-alpha-reductase 1	67				Missing (in Ref. 4; AAF14869).	androgen biosynthetic process|cell differentiation|sex determination|sex differentiation	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|electron carrier activity				0					Dutasteride(DB01126)|Finasteride(DB01216)	GCTGGCCCTGCCGCTCTACCA	0.711			NA											6	13					0	0	0.001168	0	0
ADCY2	108	broad.mit.edu	37	5	7766897	7766897	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:7766897C>A	uc003jdz.1	+	17	2259	c.2192C>A	c.(2191-2193)GCG>GAG	p.A731E	ADCY2_uc011cmo.1_Missense_Mutation_p.A551E	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	731					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						ATTCTGCGTGCGCAGAATTTA	0.428			NA											31	40					1.36615e-20	2.40172e-20	0.002836	1	0
ADCY2	108	broad.mit.edu	37	5	7766902	7766902	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:7766902A>G	uc003jdz.1	+	17	2264	c.2197A>G	c.(2197-2199)AAT>GAT	p.N733D	ADCY2_uc011cmo.1_Missense_Mutation_p.N553D	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	733					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GCGTGCGCAGAATTTATTTTT	0.428			NA											33	45					0	0	0.003755	0	0
SEMA5A	9037	broad.mit.edu	37	5	9044566	9044566	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:9044566G>T	uc003jek.2	-	22	3736	c.3024C>A	c.(3022-3024)CCC>CCA	p.P1008P		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	1008	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CAGGTGAGACGGGGTGGATGA	0.532			NA											23	57					1.10513e-12	1.60419e-12	0.002299	1	0
TAS2R1	50834	broad.mit.edu	37	5	9629330	9629330	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:9629330C>T	uc003jem.1	-	1	1134	c.815G>A	c.(814-816)GGA>GAA	p.G272E		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	272	Helical; Name=7; (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						GAGAGAGTGTCCAGAAGGGTA	0.373			NA											21	38					0	0	0.010504	0	0
CTNND2	1501	broad.mit.edu	37	5	11082812	11082812	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:11082812G>C	uc003jfa.1	-	16	2929	c.2784C>G	c.(2782-2784)CTC>CTG	p.L928L	CTNND2_uc010itt.2_Silent_p.L837L|CTNND2_uc011cmy.1_Silent_p.L591L|CTNND2_uc011cmz.1_Silent_p.L495L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.L520L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	928					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ACATACCGATGAGCTCCTTAT	0.507			NA											33	54					0	0	0.005524	0	0
CTNND2	1501	broad.mit.edu	37	5	11159798	11159798	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:11159798G>T	uc003jfa.1	-	12	2194	c.2049C>A	c.(2047-2049)ACC>ACA	p.T683T	CTNND2_uc010itt.2_Silent_p.T592T|CTNND2_uc011cmy.1_Silent_p.T346T|CTNND2_uc011cmz.1_Silent_p.T250T|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.T250T	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	683	ARM 5.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TCACCGCGTTGGTCAGTACTG	0.507			NA											36	58					3.33393e-15	5.14358e-15	0.004878	1	0
GUSBP1	728411	broad.mit.edu	37	5	21491452	21491452	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:21491452C>T	uc010iub.2	+	4	278	c.198C>T	c.(196-198)TCC>TCT	p.S66S	GUSBP1_uc011cnn.1_RNA|GUSBP1_uc003jgh.3_Intron	NR_027028				SubName: Full=Putative uncharacterized protein GUSBL2;												0						ACCAGATCTCCGTCAAGTGCA	0.532			NA											6	15					0	0	0.001168	0	0
CDH12	1010	broad.mit.edu	37	5	21765109	21765109	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:21765109C>A	uc010iuc.2	-	9	1951	c.1493G>T	c.(1492-1494)TGT>TTT	p.C498F	CDH12_uc011cno.1_Missense_Mutation_p.C458F|CDH12_uc003jgk.2_Missense_Mutation_p.C498F|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	498	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						GGCATTTTCACACACGGCTGT	0.363			NA								HNSCC(59;0.17)			29	38					1.80694e-10	2.42973e-10	0.009535	1	0
PRDM9	56979	broad.mit.edu	37	5	23526698	23526699	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:23526698_23526699GG>TT	uc003jgo.2	+	11	1683_1684	c.1501_1502GG>TT	c.(1501-1503)GGC>TTC	p.G501F		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	501					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GTCCAGAACAGGCCAGAAAGTG	0.455			NA								HNSCC(3;0.000094)			17	13					0	0	0.004672	0	0
CDH10	1008	broad.mit.edu	37	5	24535880	24535880	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:24535880C>A	uc003jgr.1	-	4	910	c.578G>T	c.(577-579)GGG>GTG	p.G193V	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	193	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GGCGCTGTTCCCATATGAAGG	0.463			NA								HNSCC(23;0.051)			19	21					6.94344e-10	9.1297e-10	0.006122	1	0
CDH9	1007	broad.mit.edu	37	5	26881517	26881517	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:26881517T>A	uc003jgs.1	-	12	2267	c.2098A>T	c.(2098-2100)ATA>TTA	p.I700L	CDH9_uc011cnv.1_Missense_Mutation_p.I293L	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	700	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GTCCTCCTTATCTGAAAAATA	0.403	Melanoma(8;187 585 15745 40864 52829)		NA											33	65					0	0	0.009535	0	0
CDH9	1007	broad.mit.edu	37	5	26885730	26885730	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:26885730T>A	uc003jgs.1	-	11	2044	c.1875A>T	c.(1873-1875)ATA>ATT	p.I625I	CDH9_uc011cnv.1_Silent_p.I218I	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	625	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TACTAAGCAGTATGAGGACAC	0.473	Melanoma(8;187 585 15745 40864 52829)		NA											11	14					0	0	0.008291	0	0
CDH6	1004	broad.mit.edu	37	5	31323360	31323360	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:31323360G>A	uc003jhe.1	+	12	2644	c.2318G>A	c.(2317-2319)CGA>CAA	p.R773Q		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	773	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TGGGGACCTCGATTCAAAAAG	0.463			NA											12	28					0	0	0.00245	0	0
RNASEN	29102	broad.mit.edu	37	5	31526703	31526703	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:31526703C>A	uc003jhg.2	-	4	696	c.337G>T	c.(337-339)GTT>TTT	p.V113F	RNASEN_uc003jhh.2_Missense_Mutation_p.V113F|RNASEN_uc003jhi.2_Missense_Mutation_p.V113F|RNASEN_uc010iui.1_Missense_Mutation_p.V104F	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	113	Pro-rich.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						CAAGGAGGAACTGGGAAGGGG	0.612			NA											11	23					6.40141e-05	7.11046e-05	0.000978	1	0
NPR3	4883	broad.mit.edu	37	5	32780908	32780908	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:32780908G>C	uc003jhv.2	+	5	1494	c.1276G>C	c.(1276-1278)GCG>CCG	p.A426P	NPR3_uc010iuo.2_Missense_Mutation_p.A210P|NPR3_uc011cnz.1_Missense_Mutation_p.A210P|NPR3_uc003jhu.2_Missense_Mutation_p.A426P	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	426	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	TGATGTGGAGGCGGGCACCCA	0.567			NA											49	90					0	0	0.00361	0	0
NPR3	4883	broad.mit.edu	37	5	32784940	32784940	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:32784940G>T	uc003jhv.2	+	7	1683	c.1465G>T	c.(1465-1467)GTG>TTG	p.V489L	NPR3_uc011cnz.1_Missense_Mutation_p.V272L|NPR3_uc003jhu.2_Missense_Mutation_p.V488L	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	489	Helical; (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGGAATTGTCGTGGGGGCTTT	0.453			NA											19	34					2.89027e-11	4.02321e-11	0.002299	1	0
RANBP3L	202151	broad.mit.edu	37	5	36257164	36257164	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:36257164G>T	uc003jkh.2	-	10	1275	c.782C>A	c.(781-783)TCT>TAT	p.S261Y	RANBP3L_uc011cow.1_Missense_Mutation_p.S286Y	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	261					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			ATTTTTAATAGAGTCTGTTCC	0.373			NA											14	21					0.000308642	0.000333212	0.003163	1	0
C7	730	broad.mit.edu	37	5	40979941	40979941	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:40979941G>T	uc003jmh.2	+	17	2394	c.2280G>T	c.(2278-2280)AGG>AGT	p.R760S	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	760	Complement control factor I module 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TTACTGGTAGGGACAGCTGTA	0.468			NA											11	16					9.70103e-10	1.27086e-09	0.008291	1	0
CCL28	56477	broad.mit.edu	37	5	43381982	43381982	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:43381982C>A	uc003jnu.2	-	3	434	c.364G>T	c.(364-366)GGC>TGC	p.G122C	CCL28_uc003jns.2_RNA|CCL28_uc003jnt.2_RNA|CCL28_uc010ivn.2_Missense_Mutation_p.G75C	NM_148672	NP_683513	Q9NRJ3	CCL28_HUMAN	chemokine (C-C motif) ligand 28 precursor	122					chemotaxis|immune response	extracellular space	chemokine activity	p.G122S(1)		ovary(1)|kidney(1)	2						GTTTTATGGCCGTATGTTTCG	0.413	Esophageal Squamous(178;1549 1997 2043 22794 27051)		NA											46	87					6.9144e-35	1.41062e-34	0.00361	1	0
CCL28	56477	broad.mit.edu	37	5	43388480	43388480	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:43388480C>G	uc003jnu.2	-	2	233	c.163G>C	c.(163-165)GAT>CAT	p.D55H	CCL28_uc003jns.2_RNA|CCL28_uc003jnt.2_RNA|CCL28_uc010ivn.2_Missense_Mutation_p.D8H	NM_148672	NP_683513	Q9NRJ3	CCL28_HUMAN	chemokine (C-C motif) ligand 28 precursor	55					chemotaxis|immune response	extracellular space	chemokine activity			ovary(1)|kidney(1)	2						CAATCCCCATCAGCTCTCTGG	0.498	Esophageal Squamous(178;1549 1997 2043 22794 27051)		NA											16	21					0	0	0.006122	0	0
HCN1	348980	broad.mit.edu	37	5	45262443	45262443	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:45262443C>T	uc003jok.2	-	8	2278	c.2253G>A	c.(2251-2253)CCG>CCA	p.P751P		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	751	Gln-rich.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GCTGCGGGGACGgctgctgtg	0.428			NA											17	16					0	0	0.006122	0	0
IL6ST	3572	broad.mit.edu	37	5	55252045	55252045	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:55252045C>T	uc003jqq.2	-	10	1330	c.1075G>A	c.(1075-1077)GCC>ACC	p.A359T	IL6ST_uc010iwb.2_Missense_Mutation_p.A359T|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Missense_Mutation_p.A70T|IL6ST_uc003jqr.2_3'UTR	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	359	Extracellular (Potential).|Fibronectin type-III 3.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				TTTCCATTGGCTTCAAAAGGA	0.274			NA	O		hepatocellular ca								14	4					0	0	0.00245	0	0
F2R	2149	broad.mit.edu	37	5	76028811	76028811	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:76028811G>A	uc003ken.3	+	2	1026	c.761G>A	c.(760-762)TGT>TAT	p.C254Y		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	254	Extracellular (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	ATCACTACCTGTCATGATGTG	0.527			NA											31	10					0	0	0.008361	0	0
CRHBP	1393	broad.mit.edu	37	5	76251618	76251618	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:76251618G>T	uc003ker.2	+	4	754	c.474G>T	c.(472-474)ATG>ATT	p.M158I	CRHBP_uc010izx.2_Missense_Mutation_p.M158I	NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	158					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		ATGTGGCCATGATCTTCTTCC	0.473			NA											21	8					6.33239e-15	9.67523e-15	0.010504	1	0
VCAN	1462	broad.mit.edu	37	5	82786165	82786165	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:82786165C>G	uc003kii.3	+	3	675	c.319C>G	c.(319-321)CCC>GCC	p.P107A	VCAN_uc003kij.3_Missense_Mutation_p.P107A|VCAN_uc010jau.2_Missense_Mutation_p.P107A|VCAN_uc003kik.3_Missense_Mutation_p.P107A|VCAN_uc003kih.3_Missense_Mutation_p.P107A	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	107	Ig-like V-type.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GCCCACACATCCCGAGGCTGT	0.502			NA											24	10					0	0	0.00278	0	0
GPR98	84059	broad.mit.edu	37	5	90107048	90107048	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:90107048G>T	uc003kju.2	+	74	16067	c.15971G>T	c.(15970-15972)GGG>GTG	p.G5324V	GPR98_uc003kjt.2_Missense_Mutation_p.G3030V|GPR98_uc003kjw.2_Missense_Mutation_p.G985V	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5324	Calx-beta 34.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAGCCTGAGGGGCAGGAATTC	0.418			NA											7	2					8.12818e-05	8.99342e-05	0.001984	1	0
FER	2241	broad.mit.edu	37	5	108133938	108133938	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:108133938G>T	uc003kop.1	+	3	439	c.55G>T	c.(55-57)GAC>TAC	p.D19Y	FER_uc011cve.1_Intron|FER_uc011cvf.1_RNA|FER_uc003koq.2_Missense_Mutation_p.D19Y|FER_uc011cvg.1_5'UTR	NM_005246	NP_005237	P16591	FER_HUMAN	fer (fps/fes related) tyrosine kinase	19	Important for interaction with membranes containing phosphoinositides.|FCH.				intracellular signal transduction|peptidyl-tyrosine phosphorylation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|kidney(1)	5		all_cancers(142;2.86e-06)|all_epithelial(76;9.81e-08)|Prostate(80;0.00972)|Lung NSC(167;0.039)|Ovarian(225;0.0448)|all_lung(232;0.0496)|Colorectal(57;0.0986)|Breast(839;0.152)		OV - Ovarian serous cystadenocarcinoma(64;6.77e-10)|Epithelial(69;4.13e-08)|COAD - Colon adenocarcinoma(37;0.0174)		AAAATTGCAAGACTGGGAATT	0.388	Colon(146;1051 1799 9836 27344 47401)		NA											19	5					1.56452e-12	2.25723e-12	0.007413	1	0
FAM170A	340069	broad.mit.edu	37	5	118969798	118969798	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:118969798G>T	uc003ksm.2	+	3	565	c.355G>T	c.(355-357)GTA>TTA	p.V119L	FAM170A_uc003ksl.2_Missense_Mutation_p.V119L|FAM170A_uc003ksn.2_Missense_Mutation_p.V119L|FAM170A_uc003kso.2_Missense_Mutation_p.V72L	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	119						intracellular	zinc ion binding			skin(1)	1						CTCTCTGTGTGTAAACAAAGA	0.483			NA											25	7					2.39556e-15	3.70792e-15	0.00278	1	0
FTMT	94033	broad.mit.edu	37	5	121187974	121187974	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:121187974G>T	uc003kss.2	+	1	325	c.316G>T	c.(316-318)GTG>TTG	p.V106L		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	106	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CCGGGATGACGTGGCCTTGAA	0.592			NA											17	8					1.15088e-07	1.40192e-07	0.004007	1	0
CSNK1G3	1456	broad.mit.edu	37	5	122881511	122881511	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:122881511G>T	uc003ktm.2	+	2	873	c.154G>T	c.(154-156)GGC>TGC	p.G52C	CSNK1G3_uc003ktl.2_Missense_Mutation_p.G52C|CSNK1G3_uc003ktn.2_Missense_Mutation_p.G52C|CSNK1G3_uc003kto.2_Missense_Mutation_p.G52C|CSNK1G3_uc011cwr.1_Intron|CSNK1G3_uc011cws.1_Intron|CSNK1G3_uc010jda.2_Missense_Mutation_p.G52C	NM_004384	NP_004375	Q9Y6M4	KC1G3_HUMAN	casein kinase 1, gamma 3 isoform 1	52	Protein kinase.|ATP (By similarity).				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity				0		all_cancers(142;0.0156)|Prostate(80;0.0322)|Lung NSC(810;0.245)	KIRC - Kidney renal clear cell carcinoma(527;0.165)|Kidney(363;0.229)	OV - Ovarian serous cystadenocarcinoma(64;0.000121)|Epithelial(69;0.000227)|all cancers(49;0.00176)		AATTGGATGTGGCAATTTTGG	0.333	Pancreas(187;2868 2964 4353 6297)		NA											16	5					8.28177e-16	1.30601e-15	0.007413	1	0
FBN2	2201	broad.mit.edu	37	5	127640704	127640704	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:127640704G>A	uc003kuu.2	-	45	6184	c.5745C>T	c.(5743-5745)TAC>TAT	p.Y1915Y		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1915	EGF-like 31; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AGATGCACTGGTAACTTCCTT	0.448			NA											13	3					0	0	0.001368	0	0
RAD50	10111	broad.mit.edu	37	5	131973867	131973867	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:131973867G>T	uc003kxi.2	+	23	3957	c.3570G>T	c.(3568-3570)AAG>AAT	p.K1190N	RAD50_uc003kxh.2_Missense_Mutation_p.K1051N	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	1190					DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGATGCTGAAGGGAGACACAG	0.453			NA						Homologous_recombination					10	3					0.00829132	0.00865604	0.008291	1	0
FSTL4	23105	broad.mit.edu	37	5	132552942	132552942	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:132552942G>C	uc003kyn.1	-	13	1805	c.1587C>G	c.(1585-1587)ATC>ATG	p.I529M	FSTL4_uc003kym.1_Missense_Mutation_p.I178M	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	529						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCTGGGCTTGGATGTCGACCA	0.517			NA											20	7					0	0	0.002299	0	0
NEUROG1	4762	broad.mit.edu	37	5	134870935	134870935	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:134870935C>G	uc003lax.2	-	1	705	c.446G>C	c.(445-447)CGC>CCC	p.R149P		NM_006161	NP_006152	Q92886	NGN1_HUMAN	neurogenin 1	149					positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter	nucleus	chromatin binding|E-box binding|sequence-specific DNA binding transcription factor activity|transcription factor binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATCCGCCAGGCGCAGTGTCTC	0.706			NA											3	5					0	0	0.004672	0	0
NME5	8382	broad.mit.edu	37	5	137465150	137465150	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:137465150T>A	uc003lce.2	-	3	215	c.137A>T	c.(136-138)AAA>ATA	p.K46I	BRD8_uc003lcc.1_Intron	NM_003551	NP_003542	P56597	NDK5_HUMAN	non-metastatic cells 5, protein expressed in	46					anti-apoptosis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatid development|UTP biosynthetic process		ATP binding|nucleoside diphosphate kinase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GAGGCGTAGTTTTCTTCTCTA	0.338			NA											14	0					0	0	0.004007	0	0
PSD2	84249	broad.mit.edu	37	5	139218303	139218303	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:139218303C>G	uc003leu.1	+	13	2119	c.1914C>G	c.(1912-1914)TCC>TCG	p.S638S		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	638	Helical; (Potential).				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGTCAGCTCCATGAAGAAGT	0.607			NA											13	3					0	0	0.001855	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207853	140207853	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140207853G>C	uc003lho.2	+	1	204	c.177G>C	c.(175-177)CTG>CTC	p.L59L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.L59L|PCDHA6_uc011dab.1_Silent_p.L59L	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	59	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCGGAGCTGGTGCCGCGCC	0.627			NA											48	13					0	0	0.00361	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209082	140209082	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140209082C>A	uc003lho.2	+	1	1433	c.1406C>A	c.(1405-1407)CCG>CAG	p.P469Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.P469Q|PCDHA6_uc011dab.1_Missense_Mutation_p.P469Q	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	469	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGAACAACCCGCCGGGCTGC	0.662			NA											26	12					2.65835e-16	4.23906e-16	0.007291	1	0
PCDHB3	56132	broad.mit.edu	37	5	140480990	140480990	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140480990G>T	uc003lio.2	+	1	757	c.757G>T	c.(757-759)GAG>TAG	p.E253*	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	253	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGTTCTAGAGAATACCCC	0.448			NA											28	9					3.69857e-22	6.66678e-22	0.008361	1	0
PCDHB7	56129	broad.mit.edu	37	5	140554148	140554148	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140554148C>A	uc003lit.2	+	1	1906	c.1732C>A	c.(1732-1734)CGG>AGG	p.R578R		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	578	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGTTGCCCCGGGCGGCCGA	0.706			NA											35	10					1.56738e-10	2.13175e-10	0.004289	1	0
PCDHB9	56127	broad.mit.edu	37	5	140568923	140568923	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140568923C>A	uc003liw.1	+	3	2032	c.2032C>A	c.(2032-2034)CCG>ACG	p.P678T		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	678	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAGGCGGCCCCGGCCCAGGC	0.692			NA											42	12					9.57592e-29	1.87052e-28	0.00361	1	0
PCDHB11	56125	broad.mit.edu	37	5	140580953	140580953	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140580953C>A	uc003liy.2	+	1	1606	c.1606C>A	c.(1606-1608)CGC>AGC	p.R536S	PCDHB11_uc011daj.1_Missense_Mutation_p.R171S	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	536	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCCACAGACCGCGGCTCCCC	0.667			NA											29	10					3.17567e-06	3.71277e-06	0.008361	1	0
PCDHB11	56125	broad.mit.edu	37	5	140581353	140581353	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140581353C>A	uc003liy.2	+	1	2006	c.2006C>A	c.(2005-2007)CCC>CAC	p.P669H	PCDHB11_uc011daj.1_Missense_Mutation_p.P304H	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	669	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCTCCCAGCCCTACCTGCCG	0.687			NA											32	12					1.74807e-11	2.45005e-11	0.002096	1	0
PCDHB12	56124	broad.mit.edu	37	5	140590838	140590838	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140590838C>T	uc003liz.2	+	1	2548	c.2359C>T	c.(2359-2361)CCC>TCC	p.P787S	PCDHB12_uc011dak.1_Missense_Mutation_p.P450S|PCDHB13_uc003lja.1_5'Flank	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	787	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGAAGAAAATCCCCCATTTCA	0.378			NA											18	6					0	0	0.006122	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594246	140594246	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140594246G>T	uc003lja.1	+	1	738	c.551G>T	c.(550-552)CGC>CTC	p.R184L		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	184	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTCCTCACCCGCAAACGCAGT	0.488			NA											21	5					7.41877e-09	9.4081e-09	0.001882	1	0
PCDHB18	54660	broad.mit.edu	37	5	140615975	140615975	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140615975G>T	uc003ljc.1	+	1	2038	c.1690G>T	c.(1690-1692)GTG>TTG	p.V564L		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GCTGTTCGGCGTGTGGGCGCA	0.697			NA											33	7					2.87052e-16	4.57228e-16	0.005524	1	0
PCDHGA4	56111	broad.mit.edu	37	5	140736547	140736547	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140736547G>T	uc003ljq.1	+	1	1780	c.1780G>T	c.(1780-1782)GTG>TTG	p.V594L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.V594L	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	594	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTGGTGGCAGTGGACAGAGA	0.607			NA											44	19					1.00001e-27	1.94271e-27	0.009718	1	0
PCDHGB3	56102	broad.mit.edu	37	5	140751907	140751907	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140751907G>T	uc003ljw.1	+	1	1946	c.1946G>T	c.(1945-1947)GGA>GTA	p.G649V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.G649V|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	649	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGCGTGATGGAGGACAGCAG	0.637			NA											15	8					7.93312e-07	9.43756e-07	0.00245	1	0
PCDHGB6	56100	broad.mit.edu	37	5	140788431	140788431	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140788431C>A	uc003lkj.1	+	1	662	c.662C>A	c.(661-663)CCA>CAA	p.P221Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.P221Q	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	221	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGGACCCACCAAGAAGTGCC	0.458			NA											4	2					0.00909568	0.0094611	0.009096	1	0
IL17B	27190	broad.mit.edu	37	5	148754126	148754126	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:148754126G>T	uc003lqo.2	-	3	399	c.349C>A	c.(349-351)CCG>ACG	p.P117T		NM_014443	NP_055258	Q9UHF5	IL17B_HUMAN	interleukin 17B precursor	117					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCCTCCGGCAGGTCCACG	0.627			NA											10	2					7.48243e-07	8.9163e-07	0.006214	1	0
CSF1R	1436	broad.mit.edu	37	5	149460556	149460556	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:149460556G>T	uc003lrl.2	-	2	276	c.81C>A	c.(79-81)GTC>GTA	p.V27V	CSF1R_uc011dcd.1_5'UTR|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.V27V|CSF1R_uc011dce.1_Silent_p.V27V|CSF1R_uc011dcf.1_Silent_p.V27V	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	27	Ig-like C2-type 1.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	CCAGCTCAGGGACACTGGGCT	0.612			NA											6	3					0.00116845	0.00123892	0.001168	1	0
TCOF1	6949	broad.mit.edu	37	5	149747463	149747463	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:149747463A>C	uc003lry.2	+	4	469	c.361A>C	c.(361-363)ATG>CTG	p.M121L	TCOF1_uc003lrw.2_Missense_Mutation_p.M121L|TCOF1_uc011dch.1_Missense_Mutation_p.M121L|TCOF1_uc003lrz.2_Missense_Mutation_p.M121L|TCOF1_uc003lrx.2_Missense_Mutation_p.M121L|TCOF1_uc003lsa.2_Missense_Mutation_p.M121L	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	121					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCATCAAGCATGAAAGAAAA	0.493			NA											9	3					0	0	0.008291	0	0
FAT2	2196	broad.mit.edu	37	5	150920179	150920179	+	Silent	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:150920179A>T	uc003lue.3	-	10	9001	c.8988T>A	c.(8986-8988)ACT>ACA	p.T2996T	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2996	Extracellular (Potential).|Cadherin 26.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGATCTCCACAGTGACCGAAG	0.517			NA											16	2					0	0	0.004007	0	0
HAVCR1	26762	broad.mit.edu	37	5	156482482	156482482	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:156482482G>T	uc010jij.1	-	3	294	c.109C>A	c.(109-111)CAC>AAC	p.H37N	HAVCR1_uc011ddl.1_5'Flank|HAVCR1_uc003lwi.2_Missense_Mutation_p.H37N|HAVCR1_uc011ddm.1_Missense_Mutation_p.H37N	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	37	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	integral to membrane	receptor activity	p.H37Q(1)		ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCACTGTAGTGGCAGGGTAGT	0.483			NA											24	2					7.07758e-08	8.74867e-08	0.004656	1	0
FAM71B	153745	broad.mit.edu	37	5	156589873	156589873	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:156589873C>G	uc003lwn.2	-	2	1503	c.1403G>C	c.(1402-1404)CGG>CCG	p.R468P		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	468						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGATGCGGACCGGTGGGAAGA	0.527			NA											58	16					0	0	0.00361	0	0
NIPAL4	348938	broad.mit.edu	37	5	156898710	156898710	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:156898710G>T	uc003lwx.3	+	5	773	c.657G>T	c.(655-657)CTG>CTT	p.L219L	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Silent_p.L200L	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	219	Helical; (Potential).					integral to membrane	receptor activity				0						TGAACCTGCTGGGGAAGCTGG	0.547			NA									OREG0016979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	1					0.00116845	0.00123892	0.001168	1	0
NIPAL4	348938	broad.mit.edu	37	5	156899633	156899633	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:156899633G>T	uc003lwx.3	+	6	1182	c.1066G>T	c.(1066-1068)GTG>TTG	p.V356L	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Missense_Mutation_p.V337L	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	356	Helical; (Potential).					integral to membrane	receptor activity				0						CACTTCCCTGGTGTTCCCCAT	0.542			NA									OREG0016979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	13					7.26314e-15	1.10499e-14	0.007291	1	0
GABRA6	2559	broad.mit.edu	37	5	161119118	161119118	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:161119118A>T	uc003lyu.2	+	8	1336	c.998A>T	c.(997-999)CAG>CTG	p.Q333L	GABRA6_uc003lyv.2_Missense_Mutation_p.Q104L	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	333	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTTCAGACACAGAAGGCCAAA	0.453			NA								TCGA Ovarian(5;0.080)			17	6					0	0	0.004007	0	0
ODZ2	57451	broad.mit.edu	37	5	167653201	167653201	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:167653201C>A	uc010jjd.2	+	24	5190	c.5190C>A	c.(5188-5190)AAC>AAA	p.N1730K	ODZ2_uc003lzr.3_Missense_Mutation_p.N1500K|ODZ2_uc003lzt.3_Missense_Mutation_p.N1103K|ODZ2_uc010jje.2_Missense_Mutation_p.N994K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AGAACTCCAACCGTGATGATG	0.542			NA											10	2					3.86212e-05	4.31346e-05	0.008291	1	0
DOCK2	1794	broad.mit.edu	37	5	169267785	169267785	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:169267785G>A	uc003maf.2	+	27	2808	c.2728G>A	c.(2728-2730)GAG>AAG	p.E910K	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.E402K	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	910					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCATATCCAGGAGATCATGGT	0.473			NA											6	4					0	0	0.00308	0	0
STC2	8614	broad.mit.edu	37	5	172745123	172745124	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:172745123_172745124GG>TT	uc003mco.1	-	4	1945_1946	c.635_636CC>AA	c.(634-636)ACC>AAA	p.T212K	STC2_uc003mcn.1_Missense_Mutation_p.T127K	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	212					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GGATGGCCGAGGTGCAGAAGCT	0.649			NA											13	9					0	0	0.004672	0	0
SLC34A1	6569	broad.mit.edu	37	5	176812848	176812848	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:176812848C>G	uc003mgk.3	+	2	207	c.106C>G	c.(106-108)CAG>GAG	p.Q36E		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	36	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCCAGCCCTCAGGGTAAGTG	0.682			NA											11	5					0	0	0.001368	0	0
PECI	10455	broad.mit.edu	37	6	4125573	4125573	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:4125573T>A	uc003mwf.2	-	7	743	c.706A>T	c.(706-708)AAG>TAG	p.K236*	C6orf201_uc003mwa.3_Intron|C6orf201_uc003mvz.3_RNA|C6orf201_uc011dhw.1_3'UTR|C6orf201_uc003mwb.3_RNA|PECI_uc003mwc.2_Nonsense_Mutation_p.K69*|PECI_uc003mwd.2_Nonsense_Mutation_p.K206*|PECI_uc003mwe.2_Nonsense_Mutation_p.K83*|PECI_uc010jnr.1_Intron	NM_206836	NP_996667	O75521	ECI2_HUMAN	peroxisomal D3,D2-enoyl-CoA isomerase isoform 2	236	ECH-like.				fatty acid metabolic process	mitochondrion|peroxisomal matrix	dodecenoyl-CoA delta-isomerase activity|fatty-acyl-CoA binding				0	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				ATCAGAGGCTTAGGAAAATCT	0.463			NA											32	5					0	0	0.002445	0	0
FARS2	10667	broad.mit.edu	37	6	5369009	5369009	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:5369009A>T	uc010jnv.1	+	2	542	c.206A>T	c.(205-207)AAG>ATG	p.K69M	FARS2_uc003mwr.2_Missense_Mutation_p.K69M|FARS2_uc003mws.1_Missense_Mutation_p.K69M	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	69					phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	CTCACCCGGAAGGTCCTCACC	0.582			NA											19	6					0	0	0.010504	0	0
LY86	9450	broad.mit.edu	37	6	6649876	6649876	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:6649876G>T	uc003mwy.1	+	4	405	c.371G>T	c.(370-372)GGG>GTG	p.G124V	LY86_uc003mwz.1_RNA	NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	124					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					TACTATGCTGGGCCTGTCAAT	0.249			NA											14	7					4.14922e-12	5.92033e-12	0.004007	1	0
DSP	1832	broad.mit.edu	37	6	7572226	7572226	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:7572226G>T	uc003mxp.1	+	15	2334	c.2055G>T	c.(2053-2055)AGG>AGT	p.R685S	DSP_uc003mxq.1_Missense_Mutation_p.R685S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	685	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GCGAGGGCAGGATGACTCTCA	0.443			NA											28	4					7.41945e-09	9.4081e-09	0.005443	1	0
MYLIP	29116	broad.mit.edu	37	6	16143360	16143360	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:16143360G>T	uc003nbq.2	+	4	811	c.574G>T	c.(574-576)GTG>TTG	p.V192L	MYLIP_uc003nbr.2_Missense_Mutation_p.V11L	NM_013262	NP_037394	Q8WY64	MYLIP_HUMAN	myosin regulatory light chain interacting	192	FERM.				cellular component movement|nervous system development	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1	Breast(50;0.0799)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.241)			ATGGCATTCTGTGCGGGATAG	0.453			NA											32	6					2.20262e-25	4.1379e-25	0.002836	1	0
SLC17A4	10050	broad.mit.edu	37	6	25773795	25773795	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:25773795C>T	uc003nfe.2	+	8	999	c.880C>T	c.(880-882)CTC>TTC	p.L294F	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Missense_Mutation_p.L55F|SLC17A4_uc003nfg.2_Missense_Mutation_p.L231F|SLC17A4_uc010jqa.2_Missense_Mutation_p.L7F	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	294	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						ATCCTTACCACTCTGGGCCAT	0.468			NA											17	2					0	0	0.004007	0	0
BTN3A1	11119	broad.mit.edu	37	6	26413455	26413455	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:26413455G>T	uc003nhv.2	+	10	1445	c.1077G>T	c.(1075-1077)CAG>CAT	p.Q359H	BTN3A1_uc011dkj.1_3'UTR|BTN3A1_uc011dkk.1_Missense_Mutation_p.Q307H|BTN3A1_uc010jqj.2_3'UTR	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	359	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CTGAGGACCAGAGGAGTGTGC	0.493			NA											67	20					7.59065e-32	1.51388e-31	0.00361	1	0
ZNF76	7629	broad.mit.edu	37	6	35260751	35260751	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:35260751A>T	uc003oki.1	+	11	1464	c.1259A>T	c.(1258-1260)CAG>CTG	p.Q420L	ZNF76_uc003okj.1_Missense_Mutation_p.Q420L	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	420					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATCCCAGCCCAGGTGGCGATG	0.622	Esophageal Squamous(52;92 1039 20612 23956 34676)		NA											58	12					0	0	0.00361	0	0
KCNK17	89822	broad.mit.edu	37	6	39271868	39271868	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:39271868G>T	uc003ooo.2	-	4	693	c.553C>A	c.(553-555)CTC>ATC	p.L185I	KCNK17_uc003oop.2_Missense_Mutation_p.L185I	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	185	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						CCCGAGAGGAGGGCGCCAGAG	0.652			NA											19	4					1.22574e-08	1.54465e-08	0.002299	1	0
NFYA	4800	broad.mit.edu	37	6	41058044	41058044	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:41058044G>T	uc003opo.2	+	6	721	c.543G>T	c.(541-543)CAG>CAT	p.Q181H	NFYA_uc003opp.2_Missense_Mutation_p.Q152H|NFYA_uc003opq.2_Missense_Mutation_p.Q152H	NM_002505	NP_002496	P23511	NFYA_HUMAN	nuclear transcription factor Y, alpha isoform 1	181					transcription from RNA polymerase II promoter	CCAAT-binding factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCATTCTCCAGCAAGGTAAGT	0.473			NA											23	4					1.64293e-13	2.42691e-13	0.00333	1	0
PTCRA	171558	broad.mit.edu	37	6	42883861	42883861	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:42883861C>G	uc003osx.2	+	1	135	c.54C>G	c.(52-54)CCC>CCG	p.P18P	PTCRA_uc011duz.1_Missense_Mutation_p.H15D|PTCRA_uc010jxx.1_Silent_p.P18P|PTCRA_uc010jxy.2_Silent_p.P18P|PTCRA_uc010jxz.2_Silent_p.P18P	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	18						integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CAGCCCTACCCACAGGTGAGC	0.642			NA											18	7					0	0	0.010504	0	0
PEX6	5190	broad.mit.edu	37	6	42934080	42934080	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:42934080C>A	uc003otf.2	-	11	2293	c.2200G>T	c.(2200-2202)GGC>TGC	p.G734C	PEX6_uc010jya.2_Intron	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	734					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			CGTCTCAGGCCCAGGCTCAGT	0.622			NA											15	2					6.72482e-11	9.22558e-11	0.003163	1	0
PKHD1	5314	broad.mit.edu	37	6	51503728	51503728	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:51503728C>A	uc003pah.1	-	64	11701	c.11425G>T	c.(11425-11427)GGT>TGT	p.G3809C		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3809	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CTAACATAACCATCTTGAGTT	0.383			NA											45	92					1.32136e-16	2.12611e-16	0.00874	1	0
PKHD1	5314	broad.mit.edu	37	6	51890206	51890206	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:51890206G>A	uc003pah.1	-	32	4678	c.4402C>T	c.(4402-4404)CTA>TTA	p.L1468L	PKHD1_uc003pai.2_Silent_p.L1468L	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1468	IPT/TIG 9.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TCGCTGGTTAGCCCATTGACC	0.547			NA											15	35					0	0	0.00245	0	0
C6orf142	90523	broad.mit.edu	37	6	53989472	53989472	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:53989472G>T	uc003pcg.3	+	3	534	c.421G>T	c.(421-423)GCT>TCT	p.A141S	C6orf142_uc003pcf.2_Missense_Mutation_p.A141S|C6orf142_uc003pch.3_Missense_Mutation_p.A79S|C6orf142_uc011dwz.1_Missense_Mutation_p.A100S|C6orf142_uc011dxa.1_Missense_Mutation_p.A152S	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	141						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					GGAAGATGAGGCTGCAAGCAG	0.512			NA											60	46					7.50695e-29	1.47041e-28	0.00361	1	0
PHF3	23469	broad.mit.edu	37	6	64394326	64394326	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:64394326G>T	uc003pep.1	+	3	729	c.703G>T	c.(703-705)GAT>TAT	p.D235Y	PHF3_uc010kaf.1_Missense_Mutation_p.D235Y|PHF3_uc003pem.2_Missense_Mutation_p.D188Y|PHF3_uc010kag.1_Missense_Mutation_p.D147Y|PHF3_uc010kah.1_Missense_Mutation_p.D49Y|PHF3_uc003pen.2_Missense_Mutation_p.D147Y|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.D235Y	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	235					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			AGATGGATTAGATTCTAAGCA	0.363	GBM(135;136 1820 29512 34071 46235)		NA											21	67					4.35082e-09	5.60177e-09	0.010504	1	0
BAI3	577	broad.mit.edu	37	6	69943233	69943233	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:69943233C>A	uc003pev.3	+	18	2980	c.2532C>A	c.(2530-2532)ACC>ACA	p.T844T	BAI3_uc010kak.2_Silent_p.T844T|BAI3_uc011dxx.1_Silent_p.T50T|BAI3_uc003pex.1_5'Flank	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	844	GPS.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CTGTGCTTACCGATGCATCCC	0.483			NA											46	46					6.31075e-24	1.1686e-23	0.00361	1	0
BAI3	577	broad.mit.edu	37	6	70064220	70064220	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:70064220G>T	uc003pev.3	+	27	4003	c.3555G>T	c.(3553-3555)ATG>ATT	p.M1185I	BAI3_uc010kak.2_Missense_Mutation_p.M1185I|BAI3_uc011dxx.1_Missense_Mutation_p.M391I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1185	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CTCAAATCATGGTGAGTTTTT	0.353			NA											32	5					6.38683e-12	9.06764e-12	0.008361	1	0
RIMS1	22999	broad.mit.edu	37	6	72889554	72889554	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:72889554C>T	uc003pga.2	+	5	825	c.748C>T	c.(748-750)CAA>TAA	p.Q250*	RIMS1_uc011dyb.1_5'Flank|RIMS1_uc003pgc.2_5'Flank|RIMS1_uc003pgb.3_5'Flank	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	250					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GCCCTCGCAGCAAGCCTTGGG	0.572			NA											15	3					0	0	0.00245	0	0
OOEP	441161	broad.mit.edu	37	6	74079001	74079001	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:74079001G>C	uc003pgu.3	-	2	298	c.298C>G	c.(298-300)CCC>GCC	p.P100A	OOEP_uc003pgv.3_Missense_Mutation_p.P45A	NM_001080507	NP_001073976	A6NGQ2	OOEP_HUMAN	oocyte expressed protein homolog	100	KH; atypical.					cytoplasm					0						TGTACACGGGGCCGCCCGAAA	0.562			NA											12	6					0	0	0.00499	0	0
EEF1A1	1915	broad.mit.edu	37	6	74229077	74229077	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:74229077T>G	uc003phi.2	-	2	344	c.307A>C	c.(307-309)ATT>CTT	p.I103L	EEF1A1_uc003phd.2_5'Flank|EEF1A1_uc003phe.2_Missense_Mutation_p.I103L|EEF1A1_uc003phf.2_Missense_Mutation_p.I103L|EEF1A1_uc003phg.2_Missense_Mutation_p.I103L|EEF1A1_uc003phh.2_Intron|EEF1A1_uc003phj.2_Missense_Mutation_p.I103L|EEF1A1_uc003phk.2_Missense_Mutation_p.I103L|EEF1A1_uc003phl.2_Intron|EEF1A1_uc003phm.1_Intron	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	103						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						GTCCCTGTAATCATGTTTTTG	0.398			NA									OREG0003890	type=REGULATORY REGION|Gene=LOC477388|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	3	49					0	0	0.004672	0	0
COL12A1	1303	broad.mit.edu	37	6	75811368	75811368	+	Missense_Mutation	SNP	C	C	A	rs144284766		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:75811368C>A	uc003phs.2	-	58	8637	c.8471G>T	c.(8470-8472)GGA>GTA	p.G2824V	COL12A1_uc003pht.2_Missense_Mutation_p.G1660V	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2824	Triple-helical region (COL2) with 1 imperfection.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength	p.G2824E(1)		ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TCCTGGGGTTCCCTGCACAGA	0.403			NA											20	2					0.000229342	0.000251217	0.001882	1	0
COL12A1	1303	broad.mit.edu	37	6	75847209	75847209	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:75847209C>A	uc003phs.2	-	31	5504	c.5338G>T	c.(5338-5340)GTG>TTG	p.V1780L	COL12A1_uc003pht.2_Missense_Mutation_p.V616L	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1780	Fibronectin type-III 13.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TATTTCTGCACACGACCACTA	0.403			NA											10	3					0.00829132	0.00865604	0.008291	1	0
FILIP1	27145	broad.mit.edu	37	6	76023481	76023481	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:76023481G>T	uc003pia.2	-	5	2440	c.2067C>A	c.(2065-2067)GCC>GCA	p.A689A	FILIP1_uc003phy.1_Silent_p.A689A|FILIP1_uc003phz.2_Silent_p.A590A|FILIP1_uc010kbe.2_Silent_p.A692A|FILIP1_uc003pib.1_Silent_p.A441A	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	689	Potential.									skin(3)|ovary(1)	4						CTTTATTCTTGGCAATTTGGT	0.433			NA											89	22					7.28744e-38	1.49961e-37	0.00361	1	0
SLC22A16	85413	broad.mit.edu	37	6	110778140	110778140	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:110778140C>G	uc003puf.2	-	2	201	c.134G>C	c.(133-135)GGA>GCA	p.G45A	SLC22A16_uc003pue.2_Missense_Mutation_p.G58A|SLC22A16_uc003pug.2_Missense_Mutation_p.G45A	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	45					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		AGGGGTGACTCCCATGAACAC	0.478			NA											31	7					0	0	0.002836	0	0
LAMA4	3910	broad.mit.edu	37	6	112480078	112480078	+	Missense_Mutation	SNP	G	G	T	rs137893207		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:112480078G>T	uc003pvu.2	-	14	1982	c.1673C>A	c.(1672-1674)GCG>GAG	p.A558E	LAMA4_uc003pvv.2_Missense_Mutation_p.A551E|LAMA4_uc003pvt.2_Missense_Mutation_p.A551E	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	558	Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		AATCCCTGACGCATTCTAAAG	0.303			NA											14	3					1.5842e-08	1.99285e-08	0.001855	1	0
GPRC6A	222545	broad.mit.edu	37	6	117121858	117121858	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:117121858C>T	uc003pxj.1	-	4	1459	c.1437G>A	c.(1435-1437)TGG>TGA	p.W479*	GPRC6A_uc003pxk.1_Nonsense_Mutation_p.W304*|GPRC6A_uc003pxl.1_Intron	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	479	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TGATCTCCTTCCAGAGCACAA	0.383			NA											43	10					0	0	0.007835	0	0
HSF2	3298	broad.mit.edu	37	6	122744005	122744005	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:122744005A>T	uc003pyu.2	+	9	1160	c.973A>T	c.(973-975)AGT>TGT	p.S325C	HSF2_uc003pyv.2_Missense_Mutation_p.S325C	NM_004506	NP_004497	Q03933	HSF2_HUMAN	heat shock transcription factor 2 isoform a	325					response to stress|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0				OV - Ovarian serous cystadenocarcinoma(136;0.00371)|all cancers(137;0.0299)|GBM - Glioblastoma multiforme(226;0.0586)		TCTCATGTCTAGTGCTGTCCA	0.463			NA											22	8					0	0	0.001882	0	0
TAAR6	319100	broad.mit.edu	37	6	132891991	132891991	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:132891991G>T	uc011eck.1	+	1	531	c.531G>T	c.(529-531)CTG>CTT	p.L177L		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	177	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		ACGATGGGCTGGAGGAATTAT	0.463			NA											87	10					7.63117e-38	1.56808e-37	0.00361	1	0
EYA4	2070	broad.mit.edu	37	6	133833917	133833917	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:133833917G>T	uc003qec.3	+	15	1798	c.1340G>T	c.(1339-1341)AGT>ATT	p.S447I	EYA4_uc011ecq.1_Missense_Mutation_p.S393I|EYA4_uc011ecr.1_Missense_Mutation_p.S399I|EYA4_uc003qed.3_Missense_Mutation_p.S447I|EYA4_uc003qee.3_Missense_Mutation_p.S424I|EYA4_uc011ecs.1_Missense_Mutation_p.S453I|uc003qeg.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	447					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CAGGACTTAAGGTAAGCTATG	0.338	Melanoma(57;398 1237 3528 4702 7415)		NA											46	13					8.04919e-23	1.462e-22	0.00361	1	0
EYA4	2070	broad.mit.edu	37	6	133844274	133844274	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:133844274G>C	uc003qec.3	+	18	2155	c.1697G>C	c.(1696-1698)GGT>GCT	p.G566A	EYA4_uc011ecq.1_Missense_Mutation_p.G512A|EYA4_uc011ecr.1_Missense_Mutation_p.G518A|EYA4_uc003qed.3_Missense_Mutation_p.G566A|EYA4_uc003qee.3_Missense_Mutation_p.G543A|EYA4_uc011ecs.1_Missense_Mutation_p.G572A|uc003qeg.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	566					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		AGTTTAGGAGGTGCTTTCCCC	0.383	Melanoma(57;398 1237 3528 4702 7415)		NA											42	7					0	0	0.006999	0	0
OLIG3	167826	broad.mit.edu	37	6	137814589	137814589	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:137814589G>T	uc003qhp.1	-	1	943	c.719C>A	c.(718-720)CCC>CAC	p.P240H		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	240					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		GATGGTGCAGGGGCAGGGCAG	0.701			NA											9	2					0.000274275	0.000296559	0.004482	1	0
HECA	51696	broad.mit.edu	37	6	139498103	139498103	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:139498103G>T	uc003qin.2	+	4	1778	c.1493G>T	c.(1492-1494)GGG>GTG	p.G498V		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	498					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		AAGCACTGTGGGAAGCCGGTG	0.537			NA											11	5					3.07112e-06	3.59348e-06	0.000978	1	0
GRM1	2911	broad.mit.edu	37	6	146351269	146351270	+	Missense_Mutation	DNP	CC	CC	AG			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:146351269_146351270CC>AG	uc010khw.1	+	2	1086_1087	c.616_617CC>AG	c.(616-618)CCT>AGT	p.P206S	GRM1_uc010khu.1_Missense_Mutation_p.P206S|GRM1_uc010khv.1_Missense_Mutation_p.P206S|GRM1_uc003qll.2_Missense_Mutation_p.P206S|GRM1_uc011edz.1_Missense_Mutation_p.P206S|GRM1_uc011eea.1_Missense_Mutation_p.P206S	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	206	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GAGGGTTGTCCCTTCTGACACT	0.48			NA											33	5					0	0	0.004672	0	0
ESR1	2099	broad.mit.edu	37	6	152265379	152265379	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:152265379G>T	uc003qom.3	+	6	1202	c.832G>T	c.(832-834)GGT>TGT	p.G278C	ESR1_uc010kin.2_Missense_Mutation_p.G278C|ESR1_uc010kio.2_Missense_Mutation_p.G280C|ESR1_uc010kip.2_Missense_Mutation_p.G277C|ESR1_uc003qon.3_Missense_Mutation_p.G278C|ESR1_uc003qoo.3_Missense_Mutation_p.G278C|ESR1_uc010kiq.2_Intron|ESR1_uc010kir.2_Intron|ESR1_uc011eet.1_Intron|ESR1_uc011eeu.1_Intron|ESR1_uc011eev.1_Intron|ESR1_uc011eew.1_Intron|ESR1_uc010kis.2_Intron|ESR1_uc011eex.1_Missense_Mutation_p.G59C|ESR1_uc010kit.1_Missense_Mutation_p.G15C|ESR1_uc011eey.1_Missense_Mutation_p.G15C	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	278	Interaction with AKAP13.|Hinge.|Mediates interaction with DNTTIP2.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	GGAGGGCAGGGGTGAAGTGGG	0.517			NA											42	5					1.06522e-23	1.96486e-23	0.003214	1	0
SNX9	51429	broad.mit.edu	37	6	158349650	158349650	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:158349650G>T	uc003qqv.1	+	12	1377	c.1204G>T	c.(1204-1206)GTG>TTG	p.V402L		NM_016224	NP_057308	Q9Y5X1	SNX9_HUMAN	sorting nexin 9	402	BAR.				cell communication|intracellular protein transport|lipid tube assembly|positive regulation of GTPase activity|positive regulation of protein oligomerization|receptor-mediated endocytosis	clathrin-coated vesicle|cytoplasmic vesicle membrane|extrinsic to internal side of plasma membrane|ruffle|trans-Golgi network	1-phosphatidylinositol binding|protein homodimerization activity|ubiquitin protein ligase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)|Prostate(117;0.167)		OV - Ovarian serous cystadenocarcinoma(65;8.06e-18)|BRCA - Breast invasive adenocarcinoma(81;4.48e-05)		GTGCGAGGCTGTGGGGAAGTT	0.592			NA											9	4					1.12685e-05	1.28783e-05	0.004482	1	0
FNDC1	84624	broad.mit.edu	37	6	159654110	159654110	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:159654110C>T	uc010kjv.2	+	11	2766	c.2566C>T	c.(2566-2568)CGA>TGA	p.R856*	FNDC1_uc010kjw.1_Nonsense_Mutation_p.R741*	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	856						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TGTGCCCTCCCGAGCCCACCC	0.622			NA											6	1					0	0	0.001984	0	0
FNDC1	84624	broad.mit.edu	37	6	159687132	159687132	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:159687132G>A	uc010kjv.2	+	21	5501	c.5301G>A	c.(5299-5301)TGG>TGA	p.W1767*		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1767						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGCCTATCTGGATCCCATTCG	0.493			NA											16	4					0	0	0.006122	0	0
C6orf118	168090	broad.mit.edu	37	6	165712974	165712974	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:165712974G>T	uc003qum.3	-	4	930	c.894C>A	c.(892-894)TAC>TAA	p.Y298*	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	298											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		GCGTTGCCATGTAGAGTTCAT	0.463			NA											13	4					3.27435e-08	4.07221e-08	0.00245	1	0
TTLL2	83887	broad.mit.edu	37	6	167754962	167754962	+	Missense_Mutation	SNP	C	C	T	rs149385170		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:167754962C>T	uc003qvs.1	+	3	1662	c.1574C>T	c.(1573-1575)GCG>GTG	p.A525V	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	525					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		ATGCCCTACGCGTCCCTCTTC	0.552			NA											37	6					0	0	0.004289	0	0
THBS2	7058	broad.mit.edu	37	6	169648861	169648861	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:169648861G>T	uc003qwt.2	-	4	508	c.260C>A	c.(259-261)ACG>AAG	p.T87K		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	87	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		GAGCTGGGCCGTGAGGAAGAA	0.617	Esophageal Squamous(91;219 1934 18562 44706)		NA											31	8					1.39806e-14	2.12469e-14	0.008361	1	0
SUN1	23353	broad.mit.edu	37	7	891585	891585	+	Splice_Site	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:891585A>T	uc011jvp.1	+	8	837	c.758_splice	c.e8-2	p.G253_splice	GET4_uc003sjj.1_5'Flank|SUN1_uc003sjf.2_Splice_Site_p.W170_splice|SUN1_uc011jvq.1_Splice_Site_p.G151_splice|SUN1_uc003sjg.2_Splice_Site_p.G158_splice|SUN1_uc011jvr.1_Splice_Site_p.W62_splice|SUN1_uc003sji.2_Splice_Site_p.G91_splice|SUN1_uc003sjk.2_5'Flank	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a						cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						TTTCTCTTGTAGGGAAGGCAG	0.428			NA											21	33					0	0	0.002299	0	0
C7orf27	221927	broad.mit.edu	37	7	2583439	2583439	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:2583439C>A	uc003smi.2	-	5	630	c.588G>T	c.(586-588)CAG>CAT	p.Q196H	C7orf27_uc003smh.3_5'Flank|C7orf27_uc003smj.1_Missense_Mutation_p.Q196H	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	196					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		CCATGATCTTCTGGGCACACG	0.667			NA											26	44					2.12542e-12	3.06025e-12	0.00632	1	0
ACTB	60	broad.mit.edu	37	7	5568883	5568883	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:5568883T>C	uc003sos.3	-	2	308	c.272A>G	c.(271-273)TAC>TGC	p.Y91C	ACTB_uc003sor.3_5'UTR|ACTB_uc003sot.3_Missense_Mutation_p.Y91C|ACTB_uc003soq.3_5'UTR|ACTB_uc010ksy.2_Intron	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	91					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		CAGCTCATTGTAGAAGGTGTG	0.617			NA											27	32					0	0	0.004656	0	0
TMEM195	392636	broad.mit.edu	37	7	15599808	15599808	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:15599808G>T	uc003stb.1	-	2	385	c.215C>A	c.(214-216)GCT>GAT	p.A72D		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	72					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						TGACGTTAAAGCATCATCCAG	0.448			NA											34	43					9.8876e-21	1.74257e-20	0.004878	1	0
MEOX2	4223	broad.mit.edu	37	7	15666476	15666476	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:15666476G>T	uc003stc.2	-	2	866	c.585C>A	c.(583-585)ACC>ACA	p.T195T	MEOX2_uc011jxw.1_Silent_p.T195T	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	195	Homeobox.				blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		TTTGCTCTTTGGTAAATGCTG	0.408	Esophageal Squamous(140;197 1769 16409 18257 29929)		NA											11	32					6.40141e-05	7.11046e-05	0.000978	1	0
C7orf46	340277	broad.mit.edu	37	7	23737895	23737895	+	Missense_Mutation	SNP	C	C	T	rs146231988		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:23737895C>T	uc003swo.3	+	5	811	c.722C>T	c.(721-723)TCT>TTT	p.S241F	C7orf46_uc003swq.3_Intron|C7orf46_uc003swr.3_Intron|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_Intron	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	241											0						TCATCTAGTTCTTCTCCAGAA	0.358			NA											27	30					0	0	0.002096	0	0
CCDC129	223075	broad.mit.edu	37	7	31683159	31683159	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:31683159C>A	uc003tcj.1	+	11	3168	c.2175C>A	c.(2173-2175)GCC>GCA	p.A725A	CCDC129_uc011kad.1_Silent_p.A735A|CCDC129_uc003tci.1_Silent_p.A576A|CCDC129_uc011kae.1_Silent_p.A751A|CCDC129_uc003tck.1_Silent_p.A633A	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	725											0						GGGCTGTGGCCTTGGGGACTG	0.507			NA											25	37					4.26978e-12	6.07409e-12	0.00333	1	0
PDE1C	5137	broad.mit.edu	37	7	31917651	31917651	+	Splice_Site	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:31917651T>A	uc003tcm.1	-	5	895	c.426_splice	c.e5-1	p.R142_splice	PDE1C_uc003tcn.1_Splice_Site_p.R142_splice|PDE1C_uc003tco.1_Splice_Site_p.R202_splice|PDE1C_uc003tcr.2_Splice_Site_p.R142_splice|PDE1C_uc003tcs.2_Splice_Site_p.R142_splice	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C						activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CTATACATTCTGAAAAGCCAA	0.348			NA											10	19					0	0	0.008291	0	0
BMPER	168667	broad.mit.edu	37	7	34118554	34118554	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:34118554C>A	uc011kap.1	+	12	1278	c.1164C>A	c.(1162-1164)TAC>TAA	p.Y388*		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	388	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CGTGTCAGTACGTTTTGACAA	0.582			NA											33	37					8.88839e-20	1.54355e-19	0.002096	1	0
AOAH	313	broad.mit.edu	37	7	36655997	36655997	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:36655997G>T	uc003tfh.3	-	11	1236	c.835C>A	c.(835-837)CAG>AAG	p.Q279K	AOAH_uc010kxf.2_Missense_Mutation_p.Q279K|AOAH_uc011kba.1_Missense_Mutation_p.Q247K	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	279					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						AAAGACATCTGCGACGCTGTG	0.463			NA											11	17					0.00829132	0.00865604	0.008291	1	0
ELMO1	9844	broad.mit.edu	37	7	37382250	37382250	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:37382250C>A	uc003tfk.1	-	2	352	c.45G>T	c.(43-45)CCG>CCT	p.P15P	ELMO1_uc010kxg.1_Silent_p.P15P	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	15					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GGTAGGCGCCCGGCCATTCTA	0.478			NA											41	88					2.26627e-22	4.10582e-22	0.007835	1	0
GPR141	353345	broad.mit.edu	37	7	37780648	37780648	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:37780648A>T	uc003tfm.1	+	1	653	c.653A>T	c.(652-654)CAC>CTC	p.H218L	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	218	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						TTACTATCCCACCAGGAGTTC	0.413			NA											39	64					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	7	38282072	38282072	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:38282072G>T	uc003tfu.3	-	4	433	c.198C>A	c.(196-198)GTC>GTA	p.V66V	uc003tfv.2_Silent_p.V66V					SubName: Full=TARP protein;												NA						CCATTGTGATGACATCTAGAA	0.289			NA											49	80					5.13769e-22	9.21419e-22	0.00361	1	0
GCK	2645	broad.mit.edu	37	7	44192931	44192931	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:44192931G>A	uc003tkl.2	-	2	647	c.177C>T	c.(175-177)CCC>CCT	p.P59P	GCK_uc003tkj.1_Silent_p.P58P|GCK_uc003tkk.1_Silent_p.P60P	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	59					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						GCACGTAGGTGGGCAGCATCT	0.607			NA											41	34					0	0	0.00623	0	0
ABCA13	154664	broad.mit.edu	37	7	48522714	48522714	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:48522714C>A	uc003toq.2	+	47	13161	c.13136C>A	c.(13135-13137)GCT>GAT	p.A4379D	ABCA13_uc010kys.1_Missense_Mutation_p.A1454D|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.A109D	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4379					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CCCAGTGAAGCTGGAGGTGCA	0.373			NA											8	8					0.000157383	0.000172794	0.00308	1	0
CDC14C	168448	broad.mit.edu	37	7	48964913	48964913	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:48964913C>A	uc010kyv.1	+	1	757	c.645C>A	c.(643-645)CCC>CCA	p.P215P		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						AACATTCTCCCGAGACTTATA	0.383			NA											13	18					1.00905e-13	1.49675e-13	0.008871	1	0
SEPT14	346288	broad.mit.edu	37	7	55902135	55902135	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:55902135C>G	uc003tqz.2	-	6	820	c.703G>C	c.(703-705)GCG>CCG	p.A235P		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	235					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GAGGAGTTCGCTTGAGCAGCA	0.343			NA											11	8					0	0	0.001368	0	0
ZNF479	90827	broad.mit.edu	37	7	57188163	57188163	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:57188163G>T	uc010kzo.2	-	5	1230	c.959C>A	c.(958-960)ACT>AAT	p.T320N		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	320					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTTCTCTCCAGTATGAATTCT	0.438			NA											15	17					5.3912e-06	6.23645e-06	0.006122	1	0
ZNF479	90827	broad.mit.edu	37	7	57193727	57193727	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:57193727G>T	uc010kzo.2	-	4	531	c.260C>A	c.(259-261)CCA>CAA	p.P87Q		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	87	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TCACCTACCTGGGTGTTTGGC	0.453			NA											33	41					1.99505e-19	3.43941e-19	0.002445	1	0
ZNF716	441234	broad.mit.edu	37	7	57522810	57522810	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:57522810C>A	uc011kdi.1	+	3	310	c.198C>A	c.(196-198)ACC>ACA	p.T66T		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						ACTTGATCACCTGTCTGGAGC	0.378			NA											35	52					2.20474e-14	3.3435e-14	0.003755	1	0
AUTS2	26053	broad.mit.edu	37	7	69364473	69364473	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:69364473G>C	uc003tvw.3	+	2	1254	c.511G>C	c.(511-513)GCA>CCA	p.A171P	AUTS2_uc003tvv.3_Missense_Mutation_p.A171P|AUTS2_uc003tvx.3_Missense_Mutation_p.A171P	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	171										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		AATGCCGAAGGCACTCAGACA	0.517			NA											20	52					0	0	0.010504	0	0
AUTS2	26053	broad.mit.edu	37	7	70246712	70246712	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:70246712G>T	uc003tvw.3	+	15	2859	c.2116G>T	c.(2116-2118)GCA>TCA	p.A706S	AUTS2_uc003tvx.3_Missense_Mutation_p.A682S|AUTS2_uc011keg.1_Missense_Mutation_p.A158S	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	706										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CCATGACCTGGCACGGCCTTC	0.537			NA											30	68					2.2171e-23	4.07901e-23	0.009535	1	0
TYW1B	441250	broad.mit.edu	37	7	72159680	72159680	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:72159680G>C	uc011kej.1	-	14	1662	c.1503C>G	c.(1501-1503)GTC>GTG	p.V501V	TYW1B_uc011keh.1_Silent_p.V339V|TYW1B_uc011kei.1_Silent_p.V127V	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	501					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						TTCTTACCTTGACTGCCAAGG	0.398			NA											11	42					0	0	0.008291	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658435	72658435	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:72658435C>T	uc003txs.1	-	13	1477	c.549G>A	c.(547-549)GAG>GAA	p.E183E	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						catcgaaattctcatcgacac	0			NA											20	45					0	0	0.010504	0	0
FKBP6	8468	broad.mit.edu	37	7	72745759	72745759	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:72745759G>T	uc003tya.2	+	5	700	c.568G>T	c.(568-570)GCC>TCC	p.A190S	FKBP6_uc003twz.2_Missense_Mutation_p.A160S|FKBP6_uc011kew.1_Missense_Mutation_p.A185S|FKBP6_uc010lbe.1_RNA	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	190	TPR 1.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				TTTCTATGATGCCAAAGTGAG	0.403			NA											11	69					5.50884e-06	6.34675e-06	0.001368	1	0
FKBP6	8468	broad.mit.edu	37	7	72754748	72754748	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:72754748G>T	uc003tya.2	+	6	829	c.697G>T	c.(697-699)GAC>TAC	p.D233Y	FKBP6_uc003twz.2_Missense_Mutation_p.D203Y|FKBP6_uc011kew.1_Missense_Mutation_p.D228Y|FKBP6_uc010lbe.1_RNA	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	233	TPR 2.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CCTGAAGCTAGACCGACCCAC	0.567			NA											17	32					9.16793e-09	1.15737e-08	0.00499	1	0
HGF	3082	broad.mit.edu	37	7	81355309	81355309	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:81355309T>A	uc003uhl.2	-	9	1230	c.1065A>T	c.(1063-1065)CGA>CGT	p.R355R	HGF_uc003uhm.2_Silent_p.R350R	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	355	Kringle 3.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						CATCTGGATTTCGGCAGTAAT	0.428			NA											22	46					0	0	0.002299	0	0
PCLO	27445	broad.mit.edu	37	7	82387928	82387928	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:82387928C>A	uc003uhx.2	-	25	15681	c.15392G>T	c.(15391-15393)TGG>TTG	p.W5131L		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	5054					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAGTTTGTGCCAGTTGACTAT	0.393			NA											54	163					1.4374e-25	2.70391e-25	0.00361	1	0
PCLO	27445	broad.mit.edu	37	7	82580282	82580282	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:82580282C>A	uc003uhx.2	-	6	9911	c.9622G>T	c.(9622-9624)GAT>TAT	p.D3208Y	PCLO_uc003uhv.2_Missense_Mutation_p.D3208Y|PCLO_uc010lec.2_Missense_Mutation_p.D173Y	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3139					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTTGTTTATCTTCTTCAGGG	0.473			NA											18	45					3.99206e-14	6.01554e-14	0.007413	1	0
GRM3	2913	broad.mit.edu	37	7	86394875	86394875	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:86394875C>T	uc003uid.2	+	2	1513	c.414C>T	c.(412-414)ATC>ATT	p.I138I	GRM3_uc010lef.2_Silent_p.I136I|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	138	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AAGAAAACATCCCACTTCTCA	0.428	GBM(52;969 1098 3139 52280)		NA											13	45					0	0	0.00245	0	0
ABCB4	5244	broad.mit.edu	37	7	87069682	87069682	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:87069682C>T	uc003uiv.1	-	13	1469	c.1393G>A	c.(1393-1395)GTA>ATA	p.V465I	ABCB4_uc003uiw.1_Missense_Mutation_p.V465I|ABCB4_uc003uix.1_Missense_Mutation_p.V465I	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	465	ABC transporter 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					AGATAGTTTACATTAAAGTTC	0.363			NA											15	18					0	0	0.00499	0	0
SRI	6717	broad.mit.edu	37	7	87838653	87838653	+	Splice_Site	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:87838653C>A	uc003ujq.1	-	6	563	c.511_splice	c.e6+1	p.D171_splice	SRI_uc011khg.1_Splice_Site_p.D131_splice|SRI_uc003ujr.1_Splice_Site_p.D156_splice|SRI_uc011khh.1_Splice_Site_p.D156_splice|SRI_uc010lej.1_Missense_Mutation_p.G171V	NM_003130	NP_003121	P30626	SORCN_HUMAN	sorcin isoform a						heart development|intracellular sequestering of iron ion|muscle organ development|regulation of action potential|regulation of heart contraction|regulation of striated muscle contraction|signal transduction	sarcoplasmic reticulum membrane	calcium channel regulator activity|calcium ion binding|receptor binding			upper_aerodigestive_tract(1)	1	Esophageal squamous(14;0.00202)					ATAGAACTCACCTGTAAGAGC	0.428			NA											34	30					4.31634e-10	5.74436e-10	0.002445	1	0
ZNF804B	219578	broad.mit.edu	37	7	88965012	88965012	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:88965012G>A	uc011khi.1	+	4	3254	c.2716G>A	c.(2716-2718)GGC>AGC	p.G906S		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	906						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CTGTTCCAGTGGCCCTTCAGA	0.458			NA								HNSCC(36;0.09)			41	70					0	0	0.007835	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92821666	92821666	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:92821666C>T	uc003umm.2	-	9	1309	c.1286G>A	c.(1285-1287)AGG>AAG	p.R429K	HEPACAM2_uc003uml.2_Missense_Mutation_p.R417K|HEPACAM2_uc010lff.2_Missense_Mutation_p.G409S|HEPACAM2_uc011khy.1_Missense_Mutation_p.R452K	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	429	Cytoplasmic (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						TGGAACAGACCTGCTTGGGAT	0.403			NA											35	91					0	0	0.004878	0	0
COL1A2	1278	broad.mit.edu	37	7	94059592	94059592	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:94059592G>C	uc003ung.1	+	52	4459	c.3988G>C	c.(3988-3990)GAA>CAA	p.E1330Q	COL1A2_uc011kib.1_Missense_Mutation_p.E182Q	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1330	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GACAATCATTGAATACAAAAC	0.388			NA								HNSCC(75;0.22)			53	40					0	0	0.00361	0	0
DLX5	1749	broad.mit.edu	37	7	96651669	96651669	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:96651669G>T	uc003uon.2	-	2	576	c.368C>A	c.(367-369)ACC>AAC	p.T123N	DLX5_uc011kim.1_Missense_Mutation_p.T123N	NM_005221	NP_005212	P56178	DLX5_HUMAN	distal-less homeobox 5	123					cell proliferation|endochondral ossification|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					CTCGGGCTCGGTCACTTCTTT	0.443			NA											21	52					2.32416e-17	3.82613e-17	0.002299	1	0
TRRAP	8295	broad.mit.edu	37	7	98564763	98564763	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:98564763G>C	uc003upp.2	+	49	7464	c.7255G>C	c.(7255-7257)GAT>CAT	p.D2419H	TRRAP_uc011kis.1_Missense_Mutation_p.D2401H|TRRAP_uc003upr.2_Missense_Mutation_p.D2118H	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2419					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCAGTTTTTAGATCTTGTTAA	0.418			NA											41	89					0	0	0.007835	0	0
TRRAP	8295	broad.mit.edu	37	7	98586464	98586464	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:98586464G>C	uc003upp.2	+	62	9687	c.9478G>C	c.(9478-9480)GGC>CGC	p.G3160R	TRRAP_uc011kis.1_Missense_Mutation_p.G3131R|TRRAP_uc003upr.2_Missense_Mutation_p.G2848R	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3160	FAT.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGCCATGTGGGGCGACTACCT	0.577			NA											14	36					0	0	0.001855	0	0
MEPCE	56257	broad.mit.edu	37	7	100028156	100028156	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:100028156G>C	uc003uuw.2	+	1	628	c.515G>C	c.(514-516)CGG>CCG	p.R172P	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc003uuu.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_Intron	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	172							methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGGCGCAGGCGGGTGAATTCG	0.592			NA											13	61					0	0	0.001855	0	0
ZAN	7455	broad.mit.edu	37	7	100355873	100355873	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:100355873T>C	uc003uwj.2	+	16	3523	c.3358T>C	c.(3358-3360)TGG>CGG	p.W1120R	ZAN_uc003uwk.2_Missense_Mutation_p.W1120R|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1120	VWFC 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TTGCCGCTGCTGGCCCGGCAG	0.577			NA											9	21					0	0	0.004482	0	0
EPHB4	2050	broad.mit.edu	37	7	100421849	100421849	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:100421849C>A	uc003uwn.1	-	2	590	c.99G>T	c.(97-99)GTG>GTT	p.V33V	EPHB4_uc003uwm.1_5'UTR|EPHB4_uc010lhj.1_Silent_p.V33V|EPHB4_uc011kkf.1_Silent_p.V33V|EPHB4_uc011kkg.1_Silent_p.V33V|EPHB4_uc011kkh.1_Silent_p.V33V	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	33	Extracellular (Potential).				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					GAGGGAATGTCACCCACTTCA	0.597	GBM(200;2113 3072 25865 52728)		NA											74	52					6.83469e-46	1.43761e-45	0.00361	1	0
SLC12A9	56996	broad.mit.edu	37	7	100459382	100459383	+	Missense_Mutation	DNP	GG	GG	TT	rs139020194		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:100459382_100459383GG>TT	uc003uwp.2	+	12	1702_1703	c.1560_1561GG>TT	c.(1558-1563)CTGGAC>CTTTAC	p.D521Y	SLC12A9_uc003uwq.2_Missense_Mutation_p.D432Y|SLC12A9_uc011kki.1_Missense_Mutation_p.D52Y|SLC12A9_uc003uwr.2_Missense_Mutation_p.D257Y|SLC12A9_uc003uws.2_Missense_Mutation_p.D52Y|SLC12A9_uc003uwt.2_Missense_Mutation_p.D257Y|SLC12A9_uc003uwv.2_Missense_Mutation_p.D52Y	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	521	Extracellular (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					TGCTTCGGCTGGACGTCCGGAA	0.653			NA											33	84					0	0	0.004672	0	0
MUC17	140453	broad.mit.edu	37	7	100678238	100678238	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:100678238T>A	uc003uxp.1	+	3	3594	c.3541T>A	c.(3541-3543)TCA>ACA	p.S1181T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1181	Extracellular (Potential).|59 X approximate tandem repeats.|17.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TAACACCCTTTCAACAACTCC	0.527			NA											285	438					0	0	0.00361	0	0
MUC17	140453	broad.mit.edu	37	7	100678938	100678938	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:100678938G>C	uc003uxp.1	+	3	4294	c.4241G>C	c.(4240-4242)AGC>ACC	p.S1414T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1414	Extracellular (Potential).|59 X approximate tandem repeats.|21.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCTGAGGCTAGCACCCTTTCA	0.512			NA											126	381					0	0	0.00361	0	0
MUC17	140453	broad.mit.edu	37	7	100687100	100687100	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:100687100T>A	uc003uxp.1	+	3	12456	c.12403T>A	c.(12403-12405)TGC>AGC	p.C4135S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4135	Extracellular (Potential).|EGF-like.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACCACAACATGTAAGTGATT	0.294			NA											25	20					0	0	0.00333	0	0
NAPEPLD	222236	broad.mit.edu	37	7	102760610	102760610	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:102760610C>A	uc003vbc.2	-	3	683	c.355G>T	c.(355-357)GGA>TGA	p.G119*	NAPEPLD_uc003vbd.2_Nonsense_Mutation_p.G119*|NAPEPLD_uc011klj.1_Nonsense_Mutation_p.G192*|NAPEPLD_uc003vbe.2_RNA	NM_198990	NP_945341	Q6IQ20	NAPEP_HUMAN	N-acyl phosphatidylethanolamine phospholipase D	119					phospholipid catabolic process	membrane	metal ion binding			skin(1)	1						TCCCTCACTCCAGCTTCTTCA	0.433			NA											31	71					3.00307e-07	3.63019e-07	0.008361	1	0
RELN	5649	broad.mit.edu	37	7	103155724	103155724	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:103155724C>T	uc003vca.2	-	50	8187	c.8027G>A	c.(8026-8028)AGC>AAC	p.S2676N	RELN_uc010liz.2_Missense_Mutation_p.S2676N	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2676					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TACTGGGGCGCTGCTGAAGGT	0.547	NSCLC(146;835 1944 15585 22231 52158)		NA											12	31					0	0	0.001368	0	0
RELN	5649	broad.mit.edu	37	7	103193922	103193922	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:103193922T>C	uc003vca.2	-	40	6218	c.6058A>G	c.(6058-6060)ATC>GTC	p.I2020V	RELN_uc010liz.2_Missense_Mutation_p.I2020V	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2020					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AATTGTATGATGGTGTTCTCA	0.348	NSCLC(146;835 1944 15585 22231 52158)		NA											7	32					0	0	0.004482	0	0
RELN	5649	broad.mit.edu	37	7	103202352	103202352	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:103202352C>A	uc003vca.2	-	35	5419	c.5259G>T	c.(5257-5259)GGG>GGT	p.G1753G	RELN_uc010liz.2_Silent_p.G1753G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1753					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AGGAATCAGCCCCCACAGTGT	0.478	NSCLC(146;835 1944 15585 22231 52158)		NA											10	18					2.17888e-05	2.46835e-05	0.006214	1	0
RELN	5649	broad.mit.edu	37	7	103275894	103275894	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:103275894A>C	uc003vca.2	-	19	2603	c.2443T>G	c.(2443-2445)TAT>GAT	p.Y815D	RELN_uc010liz.2_Missense_Mutation_p.Y815D	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	815					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TAGCTGAGATATGAATAATGC	0.403	NSCLC(146;835 1944 15585 22231 52158)		NA											43	21					0	0	0.00874	0	0
RELN	5649	broad.mit.edu	37	7	103474000	103474000	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:103474000C>A	uc003vca.2	-	3	617	c.457G>T	c.(457-459)GGC>TGC	p.G153C	RELN_uc010liz.2_Missense_Mutation_p.G153C	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	153	Reelin.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTCACACAGCCTGTGCCCGCA	0.453	NSCLC(146;835 1944 15585 22231 52158)		NA											14	50					5.01169e-05	5.58424e-05	0.00499	1	0
LHFPL3	375612	broad.mit.edu	37	7	103969335	103969335	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:103969335C>T	uc003vce.2	+	1	232	c.108C>T	c.(106-108)ATC>ATT	p.I36I	LHFPL3_uc003vcf.2_Silent_p.I36I	NM_199000	NP_945351	Q86UP9	LHPL3_HUMAN	lipoma HMGIC fusion partner-like 3	22	Helical; (Potential).					integral to membrane					0						CGCGGGCCATCGGCGTGCTGT	0.517			NA											10	29					0	0	0.000978	0	0
LAMB4	22798	broad.mit.edu	37	7	107704242	107704242	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:107704242C>A	uc010ljo.1	-	22	3109	c.3025G>T	c.(3025-3027)GGT>TGT	p.G1009C	LAMB4_uc003vey.2_Missense_Mutation_p.G1009C|LAMB4_uc010ljp.1_Translation_Start_Site	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1009	Laminin EGF-like 10.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CCATAGTGACCTGGTTTGCAG	0.522			NA											36	103					1.47197e-15	2.30592e-15	0.007835	1	0
NRCAM	4897	broad.mit.edu	37	7	107872866	107872866	+	Nonsense_Mutation	SNP	C	C	A	rs140770274	byFrequency	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:107872866C>A	uc003vfb.2	-	7	802	c.331G>T	c.(331-333)GAA>TAA	p.E111*	NRCAM_uc003vfc.2_Nonsense_Mutation_p.E105*|NRCAM_uc011kmk.1_Nonsense_Mutation_p.E106*|NRCAM_uc003vfd.2_Nonsense_Mutation_p.E106*|NRCAM_uc003vfe.2_Nonsense_Mutation_p.E106*	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	111	Ig-like 1.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						GCTTTCCCTTCGCTCATGATG	0.473			NA											37	86					2.05212e-20	3.59879e-20	0.005524	1	0
DOCK4	9732	broad.mit.edu	37	7	111509684	111509684	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:111509684G>T	uc003vfx.2	-	21	2324	c.2055C>A	c.(2053-2055)TAC>TAA	p.Y685*	DOCK4_uc003vfw.2_Nonsense_Mutation_p.Y126*|DOCK4_uc003vfy.2_Nonsense_Mutation_p.Y685*|DOCK4_uc003vga.1_Nonsense_Mutation_p.Y290*	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	685					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TCCGGTCCACGTACCATTTGA	0.423			NA											16	51					3.32936e-07	4.00085e-07	0.006122	1	0
ZNF277	11179	broad.mit.edu	37	7	111926927	111926927	+	Splice_Site	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:111926927G>C	uc003vge.2	+	2	221	c.92_splice	c.e2-1	p.D31_splice	ZNF277_uc003vgd.2_Splice_Site_p.D31_splice|ZNF277_uc003vgf.2_Intron|ZNF277_uc003vgc.2_Splice_Site_p.D31_splice	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277							nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						GTCTATTCCAGACAGTAAGGA	0.388			NA											5	12					0	0	0.000602	0	0
TMEM168	64418	broad.mit.edu	37	7	112407276	112407276	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:112407276T>A	uc003vgn.2	-	5	2462	c.2070A>T	c.(2068-2070)CAA>CAT	p.Q690H	TMEM168_uc010lju.2_Missense_Mutation_p.Q690H|TMEM168_uc011kmr.1_Missense_Mutation_p.Q306H	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	690						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						GTTTGAAGCCTTGTCCTGTGT	0.373			NA											12	40					0	0	0.001368	0	0
C7orf60	154743	broad.mit.edu	37	7	112462099	112462099	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:112462099C>A	uc003vgo.1	-	5	1045	c.918G>T	c.(916-918)AAG>AAT	p.K306N	C7orf60_uc011kms.1_Missense_Mutation_p.K332N	NM_152556	NP_689769	Q1RMZ1	CG060_HUMAN	hypothetical protein LOC154743	306										ovary(2)|skin(1)	3						ATTTTGAGTACTTGAAGCGTT	0.388			NA											38	20					1.07637e-12	1.56883e-12	0.004878	1	0
PPP1R3A	5506	broad.mit.edu	37	7	113520171	113520171	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:113520171G>T	uc010ljy.1	-	4	1007	c.976C>A	c.(976-978)CAC>AAC	p.H326N		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	326					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTTATTAAGTGTTGATTTATC	0.303			NA											16	41					1.37285e-15	2.1554e-15	0.004007	1	0
TES	26136	broad.mit.edu	37	7	115890435	115890435	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:115890435G>T	uc003vho.2	+	4	768	c.587G>T	c.(586-588)TGT>TTT	p.C196F	TES_uc011kmy.1_Intron|TES_uc003vhp.2_Missense_Mutation_p.C187F|uc003vhq.1_5'Flank	NM_015641	NP_056456	Q9UGI8	TES_HUMAN	testin isoform 1	196	PET.				negative regulation of cell proliferation	cytoplasm|focal adhesion|nucleus|protein complex	zinc ion binding				0	Lung NSC(10;0.0137)|all_lung(10;0.0148)	Breast(660;0.0602)	STAD - Stomach adenocarcinoma(10;0.00878)			AAACTTCCCTGTGAGATGGAT	0.517			NA											26	51					1.55469e-16	2.49311e-16	0.00333	1	0
ST7	7982	broad.mit.edu	37	7	116869938	116869938	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:116869938A>C	uc011knn.1	+	14	1470	c.1465A>C	c.(1465-1467)ACC>CCC	p.T489P	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CACTCACCTCACCCGCCGCTG	0.507			NA											6	25					0	0	0.00361	0	0
KCND2	3751	broad.mit.edu	37	7	119915317	119915317	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:119915317T>A	uc003vjj.1	+	1	1596	c.631T>A	c.(631-633)TCA>ACA	p.S211T		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	211					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GCCGTGCGGATCAAGCCCAGG	0.547			NA											17	48					0	0	0.006122	0	0
WASL	8976	broad.mit.edu	37	7	123334896	123334896	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:123334896C>T	uc003vkz.2	-	8	1027	c.699G>A	c.(697-699)AAG>AAA	p.K233K		NM_003941	NP_003932	O00401	WASL_HUMAN	Wiskott-Aldrich syndrome gene-like protein	233					actin polymerization or depolymerization|axon guidance|cellular component movement|nitric oxide metabolic process|protein complex assembly|regulation of nitric-oxide synthase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|cytosol|nucleolus|plasma membrane	actin binding|small GTPase regulator activity				0						CGAAAAGATTCTTCAATTCTG	0.299			NA											104	78					0	0	0.00361	0	0
WASL	8976	broad.mit.edu	37	7	123388756	123388756	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:123388756C>A	uc003vkz.2	-	1	361	c.33G>T	c.(31-33)CCG>CCT	p.P11P	uc003vla.2_5'Flank	NM_003941	NP_003932	O00401	WASL_HUMAN	Wiskott-Aldrich syndrome gene-like protein	11					actin polymerization or depolymerization|axon guidance|cellular component movement|nitric oxide metabolic process|protein complex assembly|regulation of nitric-oxide synthase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|cytosol|nucleolus|plasma membrane	actin binding|small GTPase regulator activity				0						TGACCCTCCGCGGCGGCGGCG	0.672			NA											9	11					0.000274275	0.000296559	0.004482	1	0
HYAL4	23553	broad.mit.edu	37	7	123516864	123516864	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:123516864C>A	uc003vlc.2	+	5	1739	c.1101C>A	c.(1099-1101)GCC>GCA	p.A367A	HYAL4_uc011knz.1_3'UTR	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	367	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						GCTACATAGCCAATGTGACCA	0.468			NA											16	48					1.3612e-06	1.61261e-06	0.003163	1	0
GRM8	2918	broad.mit.edu	37	7	126173616	126173616	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:126173616C>A	uc003vlr.2	-	8	2131	c.1820G>T	c.(1819-1821)CGC>CTC	p.R607L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.R607L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	607	Helical; Name=1; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GTCATTATAGCGGACAAAGGT	0.453			NA								HNSCC(24;0.065)			18	41					0.000958276	0.00101835	0.007413	1	0
SND1	27044	broad.mit.edu	37	7	127338952	127338952	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:127338952G>T	uc003vmi.2	+	4	599	c.373G>T	c.(373-375)GAA>TAA	p.E125*		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	125	TNase-like 1.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						AAACATTGCAGAATCACTGGT	0.473			NA											18	21					8.10497e-08	9.99262e-08	0.010504	1	0
FLNC	2318	broad.mit.edu	37	7	128494600	128494601	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:128494600_128494601GG>TT	uc003vnz.3	+	41	7070_7071	c.6861_6862GG>TT	c.(6859-6864)ACGGTC>ACTTTC	p.V2288F	FLNC_uc003voa.3_Missense_Mutation_p.V2255F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2288	Filamin 20.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGCCCCATACGGTCGCTGTCAA	0.668			NA											4	7					0	0	0.004672	0	0
FAM40B	57464	broad.mit.edu	37	7	129093097	129093097	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:129093097G>T	uc011koy.1	+	5	479	c.439G>T	c.(439-441)GAT>TAT	p.D147Y	FAM40B_uc003vow.2_Missense_Mutation_p.D147Y	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	147											0						TTCAGAGGTCGATGTGCTACA	0.517			NA											33	37					4.65686e-17	7.58738e-17	0.003755	1	0
KLHDC10	23008	broad.mit.edu	37	7	129765756	129765756	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:129765756C>T	uc003vpj.1	+	7	1051	c.916C>T	c.(916-918)CCC>TCC	p.P306S	KLHDC10_uc003vpk.1_Missense_Mutation_p.P277S|KLHDC10_uc010lmb.1_Missense_Mutation_p.P203S	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	306	Kelch 4.										0						TGCAACAAAACCCCATGAAAA	0.269			NA											10	10					0	0	0.001368	0	0
TSGA13	114960	broad.mit.edu	37	7	130353886	130353886	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:130353886A>T	uc003vqi.2	-	8	1253	c.796T>A	c.(796-798)TGG>AGG	p.W266R	COPG2_uc003vqh.1_5'Flank|TSGA13_uc003vqj.2_Missense_Mutation_p.W266R	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	266										ovary(2)	2	Melanoma(18;0.0435)					TTGATAATCCACTGCGGGGCC	0.622			NA											86	101					0	0	0.00361	0	0
CHCHD3	54927	broad.mit.edu	37	7	132709316	132709316	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:132709316C>T	uc003vre.2	-	3	377	c.241G>A	c.(241-243)GAT>AAT	p.D81N	CHCHD3_uc010lmi.2_RNA|CHCHD3_uc003vrf.2_Missense_Mutation_p.D81N|CHCHD3_uc010lmj.2_5'UTR|CHCHD3_uc011kpn.1_Missense_Mutation_p.D81N	NM_017812	NP_060282	Q9NX63	CHCH3_HUMAN	coiled-coil-helix-coiled-coil-helix domain	81					inner mitochondrial membrane organization|mitochondrial fusion	mitochondrial inner membrane	protein complex scaffold				0						CGTTTCTGATCTTCGGATTCT	0.383			NA											47	70					0	0	0.00361	0	0
EXOC4	60412	broad.mit.edu	37	7	132959880	132959880	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:132959880A>G	uc003vrk.2	+	2	265	c.230A>G	c.(229-231)CAG>CGG	p.Q77R	EXOC4_uc011kpo.1_5'UTR|EXOC4_uc003vri.2_Missense_Mutation_p.Q77R|EXOC4_uc003vrj.2_Missense_Mutation_p.Q77R	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	77	Potential.				vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				CGCACATACCAGAGCATCACA	0.468			NA											22	21					0	0	0.001882	0	0
TAS2R4	50832	broad.mit.edu	37	7	141478657	141478657	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:141478657G>T	uc003vwq.1	+	1	369	c.369G>T	c.(367-369)CGG>CGT	p.R123R		NM_016944	NP_058640	Q9NYW5	TA2R4_HUMAN	taste receptor T2R4	123	Cytoplasmic (Potential).				sensory perception of taste	cilium membrane	taste receptor activity				0	Melanoma(164;0.0171)			BRCA - Breast invasive adenocarcinoma(188;0.196)		TGCTGAAGCGGAATATCTCCC	0.483			NA											45	61					2.47872e-24	4.62003e-24	0.002522	1	0
MGAM	8972	broad.mit.edu	37	7	141719006	141719006	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:141719006G>A	uc003vwy.2	+	4	389	c.335G>A	c.(334-336)TGT>TAT	p.C112Y		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	112	P-type 1.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CAGGCCACATGTGACCAACGT	0.423			NA											100	13					0	0	0.00361	0	0
EPHB6	2051	broad.mit.edu	37	7	142562421	142562421	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:142562421G>T	uc011kst.1	+	7	1650	c.863G>T	c.(862-864)GGG>GTG	p.G288V	EPHB6_uc011ksu.1_Missense_Mutation_p.G288V|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_5'UTR|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	288	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CACTGCAACGGGGAGGGCAAG	0.667			NA											17	36					1.5739e-10	2.13247e-10	0.004007	1	0
TRPV6	55503	broad.mit.edu	37	7	142574921	142574921	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:142574921C>T	uc003wbx.1	-	4	677	c.461G>A	c.(460-462)CGT>CAT	p.R154H	TRPV6_uc003wbw.1_5'Flank|TRPV6_uc010lou.1_Missense_Mutation_p.R25H	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	154	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GCAGGGACTACGGCGGAAGGC	0.388			NA											23	22					0	0	0.001882	0	0
FAM131B	9715	broad.mit.edu	37	7	143056081	143056081	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:143056081G>A	uc003wct.2	-	4	1927	c.221C>T	c.(220-222)CCC>CTC	p.P74L	FAM131B_uc010loz.2_Missense_Mutation_p.P42L|FAM131B_uc003wcu.3_Missense_Mutation_p.P74L|FAM131B_uc010lpa.2_Missense_Mutation_p.P102L|ZYX_uc011ktd.1_5'Flank	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	74											0	Melanoma(164;0.205)					CATGGCTGTGGGCTTTGTCAC	0.577			NA											14	5					0	0	0.00245	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175250	143175250	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:143175250C>A	uc003wdc.1	+	1	285	c.285C>A	c.(283-285)GCC>GCA	p.A95A	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	95	Helical; Name=3; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					TGAACTCAGCCACCTTCTGGT	0.542			NA											30	36					9.65021e-13	1.40798e-12	0.002096	1	0
NOBOX	135935	broad.mit.edu	37	7	144096938	144096938	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:144096938G>T	uc011kue.1	-	6	1066	c.1066C>A	c.(1066-1068)CGG>AGG	p.R356R		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	356	Homeobox.				cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					CACTTGGCCCGGCGATTCTGG	0.537			NA											8	5					0.000157383	0.000172794	0.00308	1	0
NOBOX	135935	broad.mit.edu	37	7	144098525	144098525	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:144098525G>T	uc011kue.1	-	4	458	c.458C>A	c.(457-459)GCT>GAT	p.A153D		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	153					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					CCCAGCATCAGCCCCGGTGGC	0.637			NA											9	10					5.50884e-06	6.34675e-06	0.001368	1	0
CNTNAP2	26047	broad.mit.edu	37	7	146536876	146536876	+	Missense_Mutation	SNP	G	G	C	rs142185444		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:146536876G>C	uc003weu.1	+	3	798	c.282G>C	c.(280-282)CAG>CAC	p.Q94H		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	94	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATCGGAAGCAGATCAGTGCCA	0.517			NA								HNSCC(39;0.1)			25	30					0	0	0.00333	0	0
ZNF786	136051	broad.mit.edu	37	7	148769333	148769333	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:148769333C>A	uc003wfh.2	-	4	668	c.531G>T	c.(529-531)TGG>TGT	p.W177C	ZNF786_uc011kuk.1_Missense_Mutation_p.W140C|ZNF786_uc003wfi.2_Missense_Mutation_p.W91C	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CGGGGACGTCCCACAAACCAG	0.577			NA											12	1					1.08611e-07	1.32871e-07	0.000978	1	0
ZNF862	643641	broad.mit.edu	37	7	149559330	149559330	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:149559330C>T	uc010lpn.2	+	7	3273	c.3081C>T	c.(3079-3081)GCC>GCT	p.A1027A	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	1027					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						AGCTCATGGCCGTGGTGGTCT	0.602			NA											12	23					0	0	0.000978	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269499	150269499	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:150269499C>T	uc003whl.2	+	3	423	c.341C>T	c.(340-342)CCT>CTT	p.P114L	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Missense_Mutation_p.P128L	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	114							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCCCAGGGCCTCATGCTCTG	0.512			NA											40	5					0	0	0.00874	0	0
KCNH2	3757	broad.mit.edu	37	7	150643995	150643995	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:150643995G>T	uc003wic.2	-	14	3313	c.3300C>A	c.(3298-3300)CTC>CTA	p.L1100L	KCNH2_uc003wib.2_Silent_p.L760L|KCNH2_uc011kux.1_Silent_p.L1004L	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	1100	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TGAGGGTGGGGAGGGGGCTGA	0.642	GBM(137;110 1844 13671 20123 45161)		NA											53	9					1.11015e-26	2.11627e-26	0.00361	1	0
AGAP3	116988	broad.mit.edu	37	7	150815701	150815701	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:150815701G>T	uc003wjg.1	+	7	954	c.951G>T	c.(949-951)CCG>CCT	p.P317P	AGAP3_uc003wje.1_Silent_p.P89P|AGAP3_uc003wjf.1_Silent_p.P317P|AGAP3_uc010lpy.1_Silent_p.P317P|AGAP3_uc003wjh.1_Silent_p.P497P|AGAP3_uc003wji.1_5'Flank	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	281	Small GTPase-like.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						CCTCCATCCCGGCCGTGCACA	0.657			NA											28	38					1.99505e-19	3.43941e-19	0.002445	1	0
MLL3	58508	broad.mit.edu	37	7	151927028	151927028	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:151927028G>T	uc003wla.2	-	18	3175	c.2956C>A	c.(2956-2958)CCA>ACA	p.P986T	MLL3_uc003wkz.2_Missense_Mutation_p.P47T	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	986	PHD-type 4.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ACACAGTATGGATGGTAACAC	0.368	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								6	185					6.72482e-11	9.22558e-11	0.003163	1	0
ARHGEF10	9639	broad.mit.edu	37	8	1842738	1842738	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:1842738G>T	uc003wpr.2	+	13	1618	c.1440G>T	c.(1438-1440)TCG>TCT	p.S480S	ARHGEF10_uc003wpq.1_Silent_p.S505S|ARHGEF10_uc003wps.2_Silent_p.S442S|ARHGEF10_uc003wpt.2_Silent_p.S356S|ARHGEF10_uc003wpv.2_Silent_p.S213S|ARHGEF10_uc010lre.2_Silent_p.S160S	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	505	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TCGTGGCTTCGGTAATTAAGC	0.552			NA											11	1					2.80697e-09	3.62059e-09	0.000978	1	0
MYOM2	9172	broad.mit.edu	37	8	2017574	2017574	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:2017574G>A	uc003wpx.3	+	8	889	c.751G>A	c.(751-753)GGA>AGA	p.G251R	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	251					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AGGGTTCCGGGGAGACGAGGA	0.522			NA											35	57					0	0	0.004289	0	0
C8orf74	203076	broad.mit.edu	37	8	10555224	10555225	+	Missense_Mutation	DNP	CC	CC	TA	rs138937646	by1000genomes	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:10555224_10555225CC>TA	uc003wtd.1	+	3	386_387	c.357_358CC>TA	c.(355-360)ATCCGC>ATTAGC	p.R120S	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	120											0				COAD - Colon adenocarcinoma(149;0.0811)		ACACCTTCATCCGCCACTACAA	0.594			NA											23	18					0	0	0.004672	0	0
PINX1	54984	broad.mit.edu	37	8	10623065	10623065	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:10623065C>A	uc003wth.2	-	7	866	c.833G>T	c.(832-834)GGG>GTG	p.G278V	SOX7_uc011kwz.1_Intron|PINX1_uc003wti.2_3'UTR	NM_017884	NP_060354	Q96BK5	PINX1_HUMAN	PIN2-interacting protein 1	278	Telomerase inhibitory domain (TID).				mitotic metaphase plate congression|negative regulation of cell proliferation	chromosome, telomeric region|condensed chromosome kinetochore|mitochondrion|nuclear chromosome|nucleolus|spindle	protein binding|telomerase inhibitor activity|telomeric RNA binding			lung(1)|kidney(1)|skin(1)	3				Kidney(29;0.0595)|COAD - Colon adenocarcinoma(149;0.105)|KIRC - Kidney renal clear cell carcinoma(542;0.201)		CACATGGTCCCCTGCATCCTG	0.597			NA											6	8					3.59834e-05	4.03785e-05	0.001168	1	0
SCARA3	51435	broad.mit.edu	37	8	27528514	27528514	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:27528514G>C	uc003xga.1	+	6	1608	c.1467G>C	c.(1465-1467)TTG>TTC	p.L489F	SCARA3_uc003xgb.1_Intron	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	489	Collagen-like 1.|Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		CCGGCAGCTTGGGCCCCCTGG	0.677			NA											7	6					0	0	0.001984	0	0
PURG	29942	broad.mit.edu	37	8	30890256	30890256	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:30890256G>T	uc003xin.2	-	1	62	c.43C>A	c.(43-45)CGC>AGC	p.R15S	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.R15S	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	15	Poly-Gly.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		TTGCCTccgcggccgcggccg	0.527			NA											4	0					0.00024832	0.000270549	0.009096	1	0
ADAM2	2515	broad.mit.edu	37	8	39695667	39695667	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:39695667C>A	uc003xnj.2	-	1	113	c.38G>T	c.(37-39)GGG>GTG	p.G13V	ADAM2_uc003xnk.2_Missense_Mutation_p.G13V|ADAM2_uc011lck.1_Missense_Mutation_p.G13V|ADAM2_uc003xnl.2_Missense_Mutation_p.G13V	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	13					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CATCCGCAGCCCGCCGAGCCC	0.572			NA											6	111					0.00307968	0.00324849	0.00308	1	0
GINS4	84296	broad.mit.edu	37	8	41387778	41387778	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:41387778G>T	uc003xnx.2	+	2	267	c.57G>T	c.(55-57)GTG>GTT	p.V19V	GINS4_uc003xny.2_Silent_p.V19V	NM_032336	NP_115712	Q9BRT9	SLD5_HUMAN	GINS complex subunit 4	19					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				skin(1)	1	Ovarian(28;0.014)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.00732)|Lung NSC(58;0.0207)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	Colorectal(10;0.0014)|OV - Ovarian serous cystadenocarcinoma(14;0.00329)|LUSC - Lung squamous cell carcinoma(45;0.0137)|COAD - Colon adenocarcinoma(11;0.0147)			GTGAGGAAGTGGTCCTAACTC	0.468			NA											25	31					2.41591e-17	3.97052e-17	0.004656	1	0
PXDNL	137902	broad.mit.edu	37	8	52232462	52232462	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:52232462C>T	uc003xqu.3	-	23	4482	c.4381G>A	c.(4381-4383)GAG>AAG	p.E1461K	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1461					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TAGCGCTTCTCTGGGGAATCA	0.473			NA											12	3					0	0	0.004007	0	0
PXDNL	137902	broad.mit.edu	37	8	52232505	52232505	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:52232505G>T	uc003xqu.3	-	23	4439	c.4338C>A	c.(4336-4338)TGC>TGA	p.C1446*	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1446	VWFC.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AAACTGGACAGCAGGTTCCTT	0.512			NA											9	5					9.31168e-06	1.06762e-05	0.001855	1	0
PXDNL	137902	broad.mit.edu	37	8	52287226	52287226	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:52287226C>G	uc003xqu.3	-	18	3724	c.3623G>C	c.(3622-3624)GGT>GCT	p.G1208A	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1208					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CACTCTTGTACCAGGAATCAG	0.478			NA											29	10					0	0	0.008361	0	0
PXDNL	137902	broad.mit.edu	37	8	52412259	52412259	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:52412259A>T	uc003xqu.3	-	5	553	c.452T>A	c.(451-453)CTA>CAA	p.L151Q		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	151	LRR 5.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CAACACTTACAGTCGCTCTAA	0.423			NA											28	69					0	0	0.007291	0	0
PENK	5179	broad.mit.edu	37	8	57354422	57354422	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:57354422C>A	uc003xsz.2	-	2	294	c.213G>T	c.(211-213)CTG>CTT	p.L71L	PENK_uc003xta.3_Silent_p.L71L	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	71					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CTGGTTTGGACAGCTGCAGGA	0.463			NA											39	9					1.02591e-13	1.52018e-13	0.002522	1	0
CLVS1	157807	broad.mit.edu	37	8	62289231	62289231	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:62289231C>A	uc003xuh.2	+	3	847	c.523C>A	c.(523-525)CTT>ATT	p.L175I	CLVS1_uc003xug.2_3'UTR|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.L175I	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	175	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						AGATCCGGAGCTTCAGATAAA	0.448			NA											32	7					9.65021e-13	1.40798e-12	0.002096	1	0
PREX2	80243	broad.mit.edu	37	8	69020436	69020436	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:69020436C>T	uc003xxv.1	+	24	2835	c.2808C>T	c.(2806-2808)ACC>ACT	p.T936T	PREX2_uc011lez.1_Silent_p.T871T	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	936					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TCTGCCCTACCAACTGCCATG	0.433			NA											19	4					0	0	0.008871	0	0
LACTB2	51110	broad.mit.edu	37	8	71581315	71581315	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:71581315C>A	uc011lfd.1	-	1	133	c.41G>T	c.(40-42)CGA>CTA	p.R14L	LACTB2_uc003xyp.2_Missense_Mutation_p.R14L|XKR9_uc003xyq.2_5'Flank|XKR9_uc010lze.2_5'Flank|XKR9_uc010lzd.2_5'Flank	NM_016027	NP_057111	Q53H82	LACB2_HUMAN	lactamase, beta 2	14							hydrolase activity|metal ion binding			ovary(1)	1	Breast(64;0.0716)		Epithelial(68;0.00319)|all cancers(69;0.0175)|OV - Ovarian serous cystadenocarcinoma(28;0.0628)|BRCA - Breast invasive adenocarcinoma(89;0.166)			ACGCACGACTCGATTGGACAG	0.647			NA									OREG0018822	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	4					1.61879e-10	2.18706e-10	0.001368	1	0
PSKH2	85481	broad.mit.edu	37	8	87081748	87081748	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:87081748C>G	uc011lfy.1	-	1	104	c.104G>C	c.(103-105)GGG>GCG	p.G35A		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	35							ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			CGCCTCGGGCCCAGGCCCCGC	0.716			NA											13	6					0	0	0.00245	0	0
CPNE3	8895	broad.mit.edu	37	8	87570585	87570585	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:87570585A>G	uc003ydv.2	+	17	1723	c.1561A>G	c.(1561-1563)ACA>GCA	p.T521A	CPNE3_uc003ydw.1_Missense_Mutation_p.T237A	NM_003909	NP_003900	O75131	CPNE3_HUMAN	copine III	521					lipid metabolic process|vesicle-mediated transport	cytosol	calcium-dependent phospholipid binding|protein serine/threonine kinase activity|transporter activity			ovary(1)|skin(1)	2						CTACTTCAATACATACAAACT	0.438			NA											16	54					0	0	0.00499	0	0
RUNX1T1	862	broad.mit.edu	37	8	93023228	93023228	+	Splice_Site	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:93023228A>G	uc003yfd.2	-	4	642	c.558_splice	c.e4+1	p.K186_splice	RUNX1T1_uc003yfc.1_Splice_Site_p.K159_splice|RUNX1T1_uc003yfe.1_Splice_Site_p.K149_splice|RUNX1T1_uc010mao.2_Splice_Site_p.K159_splice|RUNX1T1_uc011lgi.1_Splice_Site_p.K197_splice|RUNX1T1_uc003yfh.1_Missense_Mutation_p.V150A|RUNX1T1_uc003yfb.1_Splice_Site_p.K149_splice|RUNX1T1_uc003yff.1_Splice_Site_p.K149_splice|RUNX1T1_uc003yfg.1_Missense_Mutation_p.V150A	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1						generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			ACTGTGCAATACCTTCAAAAA	0.358			NA											14	44					0	0	0.00245	0	0
CDH17	1015	broad.mit.edu	37	8	95158220	95158220	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:95158220G>A	uc003ygh.2	-	15	2228	c.2103C>T	c.(2101-2103)CCC>CCT	p.P701P	CDH17_uc011lgo.1_Silent_p.P487P|CDH17_uc011lgp.1_Silent_p.P701P	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	701	Cadherin 7.|Extracellular (Potential).					integral to membrane	calcium ion binding	p.P701T(1)		ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			ATGTAAAATGGGGACCCCGAA	0.448			NA											30	21					0	0	0.008361	0	0
MTERFD1	51001	broad.mit.edu	37	8	97256192	97256192	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:97256192G>A	uc003yhs.1	-	7	1092	c.1014C>T	c.(1012-1014)CAC>CAT	p.H338H	MTERFD1_uc003yhr.1_Silent_p.H217H|MTERFD1_uc010mbd.1_Silent_p.H338H	NM_015942	NP_057026	Q96E29	MTER1_HUMAN	MTERF domain containing 1 precursor	338					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion	transcription regulatory region DNA binding			ovary(1)	1	Breast(36;5.16e-05)					TCATCACATTGTGCACAAAAT	0.413			NA											56	28					0	0	0.00361	0	0
GRHL2	79977	broad.mit.edu	37	8	102656453	102656453	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:102656453G>T	uc010mbu.2	+	13	1942	c.1612G>T	c.(1612-1614)GTG>TTG	p.V538L		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	538						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			GACAAAGCGAGGTATCTCTCC	0.562			NA											9	3					2.17888e-05	2.46835e-05	0.006214	1	0
UBR5	51366	broad.mit.edu	37	8	103293656	103293656	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:103293656C>T	uc003ykr.1	-	41	5821	c.5788G>A	c.(5788-5790)GAT>AAT	p.D1930N	UBR5_uc003yks.1_Missense_Mutation_p.D1930N	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1930					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			GAATGCTCATCATTATGAGAC	0.413	Ovarian(131;96 1741 5634 7352 27489)		NA											14	49					0	0	0.00245	0	0
ATP6V1C1	528	broad.mit.edu	37	8	104053095	104053095	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:104053095G>T	uc003ykz.3	+	2	276	c.31G>T	c.(31-33)GGG>TGG	p.G11W	ATP6V1C1_uc010mbz.2_Intron|ATP6V1C1_uc003yla.2_Missense_Mutation_p.G11W|ATP6V1C1_uc011lhl.1_Intron	NM_001695	NP_001686	P21283	VATC1_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit	11					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism				0	Lung NSC(17;0.000427)|all_lung(17;0.000533)		OV - Ovarian serous cystadenocarcinoma(57;3.57e-05)|STAD - Stomach adenocarcinoma(118;0.133)			ATCTGCTCCTGGGGAGAAAAC	0.358			NA											21	11					3.8784e-16	6.14332e-16	0.001882	1	0
TRHR	7201	broad.mit.edu	37	8	110131617	110131617	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:110131617T>A	uc003ymz.3	+	2	1146	c.1130T>A	c.(1129-1131)CTG>CAG	p.L377Q		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	377	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GACACTTACCTGTCTGCCACA	0.418			NA											41	29					0	0	0.006999	0	0
CSMD3	114788	broad.mit.edu	37	8	113241120	113241120	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:113241120C>A	uc003ynu.2	-	70	10988	c.10829G>T	c.(10828-10830)GGA>GTA	p.G3610V	CSMD3_uc003yns.2_Missense_Mutation_p.G2812V|CSMD3_uc003ynt.2_Missense_Mutation_p.G3570V|CSMD3_uc011lhx.1_Missense_Mutation_p.G3441V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3610	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CATATTCAGTCCTACaaaata	0.279			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	2					6.40141e-05	7.11046e-05	0.000978	1	0
CSMD3	114788	broad.mit.edu	37	8	113253976	113253976	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:113253976G>T	uc003ynu.2	-	66	10600	c.10441C>A	c.(10441-10443)CTG>ATG	p.L3481M	CSMD3_uc003yns.2_Missense_Mutation_p.L2683M|CSMD3_uc003ynt.2_Missense_Mutation_p.L3441M|CSMD3_uc011lhx.1_Missense_Mutation_p.L3312M	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3481	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGTGTTCCCAGTGCAGGTCTA	0.308			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			41	32					6.07928e-31	1.20738e-30	0.009718	1	0
CSMD3	114788	broad.mit.edu	37	8	113347615	113347615	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:113347615G>C	uc003ynu.2	-	45	7267	c.7108C>G	c.(7108-7110)CTA>GTA	p.L2370V	CSMD3_uc003yns.2_Missense_Mutation_p.L1572V|CSMD3_uc003ynt.2_Missense_Mutation_p.L2330V|CSMD3_uc011lhx.1_Missense_Mutation_p.L2266V|CSMD3_uc003ynw.1_Missense_Mutation_p.L81V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2370	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AATTTGATTAGAATCTGATTT	0.398			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	12					0	0	0.00245	0	0
CSMD3	114788	broad.mit.edu	37	8	113418917	113418917	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:113418917G>T	uc003ynu.2	-	35	5804	c.5645C>A	c.(5644-5646)CCT>CAT	p.P1882H	CSMD3_uc003yns.2_Missense_Mutation_p.P1084H|CSMD3_uc003ynt.2_Missense_Mutation_p.P1842H|CSMD3_uc011lhx.1_Missense_Mutation_p.P1778H	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1882	Sushi 10.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCTTGGTTCAGGCACAGAACT	0.338			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	31					5.18039e-06	6.01703e-06	0.00308	1	0
CSMD3	114788	broad.mit.edu	37	8	113697935	113697935	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:113697935G>T	uc003ynu.2	-	15	2341	c.2182C>A	c.(2182-2184)CCA>ACA	p.P728T	CSMD3_uc003yns.2_5'UTR|CSMD3_uc003ynt.2_Missense_Mutation_p.P688T|CSMD3_uc011lhx.1_Missense_Mutation_p.P624T	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	728	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTTCCCATTGGTGCAGTAAAG	0.353			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			16	44					4.7546e-09	6.0996e-09	0.004007	1	0
CSMD3	114788	broad.mit.edu	37	8	114185950	114185950	+	Splice_Site	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:114185950C>A	uc003ynu.2	-	4	868	c.709_splice	c.e4+1	p.A237_splice	CSMD3_uc003ynt.2_Splice_Site_p.A197_splice|CSMD3_uc011lhx.1_Splice_Site_p.A237_splice|CSMD3_uc010mcx.1_Splice_Site_p.A237_splice	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1							integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTTCATTTTACCTCTACAGAT	0.393			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			35	13					2.42023e-17	3.97052e-17	0.003271	1	0
C8orf85	441376	broad.mit.edu	37	8	117950633	117950633	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:117950633G>A	uc003yof.2	+	1	170	c.151G>A	c.(151-153)GCC>ACC	p.A51T		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	51											0						GGAGGCCCTCGCCGCCAGCCC	0.672			NA											13	7					0	0	0.00245	0	0
SLC30A8	169026	broad.mit.edu	37	8	118147573	118147573	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:118147573T>A	uc003yoh.2	+	1	237	c.7T>A	c.(7-9)TTT>ATT	p.F3I	SLC30A8_uc010mcz.2_Intron|SLC30A8_uc011lia.1_5'UTR|SLC30A8_uc003yog.2_5'UTR	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	3	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CGTCATGGAGTTTCTTGAAAG	0.418	Ovarian(162;1202 1922 6011 16223 52092)		NA											23	120					0	0	0.00333	0	0
COLEC10	10584	broad.mit.edu	37	8	120114614	120114614	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:120114614G>T	uc003yoo.2	+	4	417	c.320G>T	c.(319-321)GGA>GTA	p.G107V		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	107	Collagen-like.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			GGTTTGCTTGGAATACCTGGA	0.249			NA											13	9					3.45872e-05	3.89345e-05	0.004007	1	0
FER1L6	654463	broad.mit.edu	37	8	125072822	125072822	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:125072822G>T	uc003yqw.2	+	24	3225	c.3019G>T	c.(3019-3021)GTG>TTG	p.V1007L	uc003yqy.1_RNA	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1007	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AATGAAGAAGGTGCAGCTCCT	0.562			NA											33	16					5.60225e-13	8.19056e-13	0.009535	1	0
WISP1	8840	broad.mit.edu	37	8	134225300	134225300	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:134225300C>A	uc003yub.2	+	2	339	c.263C>A	c.(262-264)ACG>AAG	p.T88K	WISP1_uc003yuc.2_Missense_Mutation_p.T88K|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Missense_Mutation_p.T88K|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_RNA	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	88	IGFBP N-terminal.				cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			GACAACTGCACGGAGGCTGCC	0.637			NA											29	11					3.73988e-18	6.2654e-18	0.00632	1	0
COL22A1	169044	broad.mit.edu	37	8	139629171	139629171	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:139629171C>A	uc003yvd.2	-	54	4303	c.3856G>T	c.(3856-3858)GCA>TCA	p.A1286S	COL22A1_uc011ljo.1_Missense_Mutation_p.A566S	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1286	Pro-rich.|Gly-rich.|Collagen-like 12.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGACCGGGTGCACCAGAATCG	0.577			NA								HNSCC(7;0.00092)			6	45					0.000274275	0.000296559	0.004482	1	0
FLJ43860	389690	broad.mit.edu	37	8	142458055	142458055	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:142458055G>T	uc003ywi.2	-	21	2852	c.2771C>A	c.(2770-2772)CCC>CAC	p.P924H	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	924							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CTTGGGCTAGGGCTCGCTGGG	0.647			NA											14	7					1.3612e-06	1.61261e-06	0.003163	1	0
CYP11B1	1584	broad.mit.edu	37	8	143956654	143956654	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:143956654G>C	uc003yxi.2	-	7	1203	c.1196C>G	c.(1195-1197)GCT>GGT	p.A399G	CYP11B1_uc010mex.2_Missense_Mutation_p.A98G|CYP11B1_uc003yxh.2_Missense_Mutation_p.A115G|CYP11B1_uc003yxj.2_Missense_Mutation_p.A399G|CYP11B1_uc010mey.2_Missense_Mutation_p.A470G	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	399					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	ACTCACCCCAGCTGGGATGTG	0.607			NA							Familial_Hyperaldosteronism_type_I				6	19					0	0	0.001168	0	0
KCNV2	169522	broad.mit.edu	37	9	2717905	2717905	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:2717905G>A	uc003zho.1	+	1	380	c.166G>A	c.(166-168)GAG>AAG	p.E56K		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	56	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		CTACTACATCGAGGAAGACGA	0.647			NA											17	27					0	0	0.006122	0	0
GLDC	2731	broad.mit.edu	37	9	6556225	6556225	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:6556225G>C	uc003zkc.2	-	18	2323	c.2130C>G	c.(2128-2130)ATC>ATG	p.I710M		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	710					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	ACACGTCACTGATGTTCTCTT	0.488			NA											14	26					0	0	0.003163	0	0
PTPRD	5789	broad.mit.edu	37	9	8319965	8319965	+	Missense_Mutation	SNP	C	C	T	rs141403124	by1000genomes	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:8319965C>T	uc003zkk.2	-	44	6247	c.5536G>A	c.(5536-5538)GCG>ACG	p.A1846T	PTPRD_uc003zkp.2_Missense_Mutation_p.A1440T|PTPRD_uc003zkq.2_Missense_Mutation_p.A1439T|PTPRD_uc003zkr.2_Missense_Mutation_p.A1430T|PTPRD_uc003zks.2_Missense_Mutation_p.A1439T|PTPRD_uc003zkl.2_Missense_Mutation_p.A1837T|PTPRD_uc003zkm.2_Missense_Mutation_p.A1833T|PTPRD_uc003zkn.2_Missense_Mutation_p.A1435T|PTPRD_uc003zko.2_Missense_Mutation_p.A1436T	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1846	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CCAACGCCCGCGCTGCCACAA	0.453			NA								TSP Lung(15;0.13)			13	16					0	0	0.001855	0	0
PTPRD	5789	broad.mit.edu	37	9	8507430	8507430	+	Silent	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:8507430T>C	uc003zkk.2	-	21	2259	c.1548A>G	c.(1546-1548)CCA>CCG	p.P516P	PTPRD_uc003zkp.2_Silent_p.P516P|PTPRD_uc003zkq.2_Silent_p.P516P|PTPRD_uc003zkr.2_Silent_p.P510P|PTPRD_uc003zks.2_Silent_p.P506P|PTPRD_uc003zkl.2_Silent_p.P516P|PTPRD_uc003zkm.2_Silent_p.P503P|PTPRD_uc003zkn.2_Silent_p.P516P|PTPRD_uc003zko.2_Silent_p.P513P	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	516	Fibronectin type-III 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTGGCTGCCCTGGTACTAAAA	0.433			NA								TSP Lung(15;0.13)			29	33					0	0	0.008361	0	0
PTPRD	5789	broad.mit.edu	37	9	8528597	8528597	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:8528597G>T	uc003zkk.2	-	14	1246	c.535C>A	c.(535-537)CGA>AGA	p.R179R	PTPRD_uc003zkp.2_Silent_p.R179R|PTPRD_uc003zkq.2_Silent_p.R179R|PTPRD_uc003zkr.2_Silent_p.R179R|PTPRD_uc003zks.2_Silent_p.R179R|PTPRD_uc003zkl.2_Silent_p.R179R|PTPRD_uc003zkm.2_Silent_p.R179R|PTPRD_uc003zkn.2_Silent_p.R179R|PTPRD_uc003zko.2_Silent_p.R179R|PTPRD_uc003zkt.1_Silent_p.R179R	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	179	Extracellular (Potential).|Ig-like C2-type 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTACCTGATCGTAACTGCTTA	0.303			NA								TSP Lung(15;0.13)			20	38					1.96292e-10	2.63698e-10	0.010504	1	0
PLIN2	123	broad.mit.edu	37	9	19126234	19126235	+	Missense_Mutation	DNP	CT	CT	AA			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	CT	CT	-	-	CT	CT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:19126234_19126235CT>AA	uc003zno.2	-	3	282_283	c.103_104AG>TT	c.(103-105)AGT>TTT	p.S35F	PLIN2_uc011lna.1_Missense_Mutation_p.S7F|PLIN2_uc011lnb.1_Missense_Mutation_p.S35F	NM_001122	NP_001113	Q99541	PLIN2_HUMAN	adipose differentiation-related protein	35					cellular lipid metabolic process	endoplasmic reticulum|extracellular region|lipid particle				ovary(2)	2						GTCCTTTGTACTGAGATAGGCT	0.54			NA											18	40					0	0	0.004672	0	0
LRRC19	64922	broad.mit.edu	37	9	26998035	26998035	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:26998035G>T	uc003zqh.2	-	3	397	c.286C>A	c.(286-288)CTC>ATC	p.L96I	IFT74_uc010mja.2_Intron|IFT74_uc010mjb.2_Intron|IFT74_uc003zqf.3_Intron|IFT74_uc003zqg.3_Intron	NM_022901	NP_075052	Q9H756	LRC19_HUMAN	leucine rich repeat containing 19 precursor	96	Extracellular (Potential).					integral to membrane					0		all_neural(11;1.81e-09)		Lung(218;1.06e-05)|LUSC - Lung squamous cell carcinoma(38;0.0001)		AGACTGGAGAGGTTACCAAAA	0.328			NA											29	55					1.38854e-25	2.61545e-25	0.008361	1	0
C9orf25	203259	broad.mit.edu	37	9	34402709	34402709	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:34402709C>A	uc011lok.1	-	3	564	c.257G>T	c.(256-258)CGA>CTA	p.R86L	C9orf25_uc003zuj.2_Missense_Mutation_p.R69L|C9orf25_uc003zuk.2_Missense_Mutation_p.R58L|C9orf25_uc011lol.1_Missense_Mutation_p.R75L|C9orf25_uc003zul.2_Missense_Mutation_p.R58L	NM_147202	NP_671735	Q8IW50	CI025_HUMAN	hypothetical protein LOC203259	86											0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.0858)		CTACCTTGTTCGGGCCATGAC	0.622			NA											21	37					2.70639e-06	3.17717e-06	0.002299	1	0
FAM75A5	727905	broad.mit.edu	37	9	65508168	65508168	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:65508168G>T	uc004adx.3	-	2	244	c.215C>A	c.(214-216)CCC>CAC	p.P72H		NM_015667	NP_056482	Q5VU36	F75A5_HUMAN	hypothetical protein LOC26165	72						integral to membrane					0						CCTGCCTCTGGGCCTCCGCCT	0.522			NA											64	108					1.46168e-27	2.83188e-27	0.00361	1	0
PGM5	5239	broad.mit.edu	37	9	71144537	71144537	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:71144537A>G	uc004agr.2	+	11	1898	c.1669A>G	c.(1669-1671)AGA>GGA	p.R557G		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	557					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						GATTCATGAGAGAACTGGCCG	0.502			NA											6	5					0	0	0.001168	0	0
GDA	9615	broad.mit.edu	37	9	74838109	74838109	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:74838109G>T	uc004aiq.2	+	7	863	c.680G>T	c.(679-681)GGC>GTC	p.G227V	GDA_uc011lse.1_Missense_Mutation_p.G153V|GDA_uc011lsf.1_Missense_Mutation_p.G153V|GDA_uc004air.2_Missense_Mutation_p.G227V|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Intron|GDA_uc004ait.1_Missense_Mutation_p.G153V	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	227					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		GGTGAACTGGGCAACATTGCT	0.418			NA											35	4					2.75727e-19	4.71918e-19	0.004878	1	0
PRUNE2	158471	broad.mit.edu	37	9	79325653	79325653	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:79325653C>A	uc010mpk.2	-	8	1661	c.1537G>T	c.(1537-1539)GCA>TCA	p.A513S		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	513					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GAGTAGTCTGCAGAATGAGAA	0.542			NA											6	2					3.59834e-05	4.03785e-05	0.001168	1	0
FLJ46321	389763	broad.mit.edu	37	9	84603853	84603853	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:84603853G>T	uc004amn.2	+	1	167	c.120G>T	c.(118-120)CTG>CTT	p.L40L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	40	Helical; (Potential).					integral to membrane					0						TGTTTATACTGTACTTGTTCT	0.458			NA											25	7					5.35356e-11	7.37993e-11	0.00278	1	0
FLJ46321	389763	broad.mit.edu	37	9	84607299	84607299	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:84607299C>A	uc004amn.2	+	4	1961	c.1914C>A	c.(1912-1914)GGC>GGA	p.G638G		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	638						integral to membrane					0						GTTTGTGGGGCTTACCCTCTG	0.478			NA											23	10					1.10513e-12	1.60419e-12	0.002299	1	0
NAA35	60560	broad.mit.edu	37	9	88635851	88635851	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:88635851G>T	uc004aoi.3	+	22	2222	c.2085G>T	c.(2083-2085)AAG>AAT	p.K695N	NAA35_uc004aoj.3_Missense_Mutation_p.K695N	NM_024635	NP_078911	Q5VZE5	NAA35_HUMAN	corneal wound healing-related protein	695					smooth muscle cell proliferation	cytoplasm|nucleus|plasma membrane				skin(2)|central_nervous_system(1)	3						TGGTTATGAAGTTATTGGCAG	0.308			NA											11	8					2.27111e-07	2.74772e-07	0.001368	1	0
BICD2	23299	broad.mit.edu	37	9	95482728	95482728	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:95482728C>A	uc004aso.1	-	4	973	c.916G>T	c.(916-918)GGC>TGC	p.G306C	BICD2_uc004asp.1_Missense_Mutation_p.G306C	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	306					microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						GCCAGGCCGCCGTGCTCAAAG	0.637			NA											22	4					7.41877e-09	9.4081e-09	0.001882	1	0
WNK2	65268	broad.mit.edu	37	9	96024316	96024316	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:96024316C>G	uc004ati.1	+	12	3287	c.3287C>G	c.(3286-3288)CCA>CGA	p.P1096R	WNK2_uc011lud.1_Missense_Mutation_p.P1096R|WNK2_uc004atj.2_Missense_Mutation_p.P1096R|WNK2_uc004atk.2_Missense_Mutation_p.P733R	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1096					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCAGCAAACCCACCGCTGCCT	0.672			NA											5	3					0	0	0.000602	0	0
PHF2	5253	broad.mit.edu	37	9	96429477	96429477	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:96429477T>G	uc004aub.2	+	17	2450	c.2303T>G	c.(2302-2304)CTG>CGG	p.L768R	PHF2_uc011lug.1_Missense_Mutation_p.L651R|PHF2_uc004auc.2_Missense_Mutation_p.L188R	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	768					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		TTGGACCTGCTGCAGGCCAGT	0.667			NA											10	2					0	0	0.006214	0	0
TEX10	54881	broad.mit.edu	37	9	103111484	103111484	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:103111484A>T	uc004bas.2	-	2	377	c.162T>A	c.(160-162)AAT>AAA	p.N54K	TEX10_uc011lvf.1_5'Flank|TEX10_uc011lvg.1_Missense_Mutation_p.N57K|TEX10_uc011lvh.1_Intron|TEX10_uc004bat.2_Missense_Mutation_p.N54K	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	54						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		TAAGTTTTCTATTGTTTGTTG	0.303			NA											11	16					0	0	0.001855	0	0
BAAT	570	broad.mit.edu	37	9	104133567	104133567	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:104133567G>A	uc010mtd.2	-	2	229	c.120C>T	c.(118-120)AAC>AAT	p.N40N	BAAT_uc004bbd.3_Silent_p.N40N	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	40					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	ACATGTCTCCGTTTTCATCTT	0.483			NA											10	41					0	0	0.008291	0	0
RNF20	56254	broad.mit.edu	37	9	104317070	104317070	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:104317070G>A	uc004bbn.2	+	15	2204	c.2114G>A	c.(2113-2115)CGG>CAG	p.R705Q		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	705	Potential.				histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		AGGAAGATCCGGGCAGTGGAG	0.408			NA											8	13					0	0	0.006214	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449437	104449437	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:104449437C>A	uc004bbp.1	-	2	1346	c.745G>T	c.(745-747)GAT>TAT	p.D249Y	GRIN3A_uc004bbq.1_Missense_Mutation_p.D249Y	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	249	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	ACATCAGCATCAGAACTTAAT	0.388			NA											26	31					4.26978e-12	6.07409e-12	0.00333	1	0
OR13C8	138802	broad.mit.edu	37	9	107331522	107331522	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:107331522C>G	uc011lvo.1	+	1	74	c.74C>G	c.(73-75)ACA>AGA	p.T25R		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAGCTCCAGACAGTTTTCTTC	0.443			NA											51	61					0	0	0.00361	0	0
ABCA1	19	broad.mit.edu	37	9	107574976	107574976	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:107574976C>A	uc004bcl.2	-	28	4242	c.3929G>T	c.(3928-3930)GGG>GTG	p.G1310V		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1310					Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GCCATCCATCCCACTGAGCAA	0.488			NA											35	56					2.75727e-19	4.71918e-19	0.004878	1	0
KLF4	9314	broad.mit.edu	37	9	110249774	110249774	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:110249774C>A	uc004bdh.2	-	3	1495	c.874G>T	c.(874-876)GCT>TCT	p.A292S	KLF4_uc004bdf.1_Missense_Mutation_p.A251S|KLF4_uc004bdg.2_Missense_Mutation_p.A301S	NM_004235	NP_004226	O43474	KLF4_HUMAN	Kruppel-like factor 4 (gut)	301	Pro-rich.				fat cell differentiation|mesodermal cell fate determination|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|stem cell maintenance|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(2)|lung(1)	3						TCGTGTGCAGCCGGCCGGTGG	0.697			NA											6	9					2.7689e-08	3.45869e-08	0.001984	1	0
SUSD1	64420	broad.mit.edu	37	9	114820804	114820804	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:114820804T>C	uc004bfu.2	-	14	2054	c.2013A>G	c.(2011-2013)ATA>ATG	p.I671M	SUSD1_uc010mui.2_Missense_Mutation_p.I671M|SUSD1_uc010muj.2_Missense_Mutation_p.I671M	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	671	Extracellular (Potential).					integral to membrane	calcium ion binding				0						GCCTGTCTCCTATAGGTATCT	0.438			NA											37	40					0	0	0.004878	0	0
ZFP37	7539	broad.mit.edu	37	9	115805811	115805811	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:115805811C>A	uc004bgm.1	-	4	1115	c.1087G>T	c.(1087-1089)GCA>TCA	p.A363S	ZFP37_uc011lwz.1_Missense_Mutation_p.A378S|ZFP37_uc011lxa.1_Missense_Mutation_p.A364S	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	363	C2H2-type 3; atypical.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCAGTGAGTGCATGTTTATGA	0.413			NA											31	32					3.99451e-17	6.52314e-17	0.009535	1	0
COL27A1	85301	broad.mit.edu	37	9	117028854	117028854	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:117028854G>T	uc011lxl.1	+	33	3403	c.3403G>T	c.(3403-3405)GGA>TGA	p.G1135*	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1135	Pro-rich.|Collagen-like 9.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GGGCCCTCAGGGACCCCAGGG	0.602			NA											17	28					2.94398e-08	3.67417e-08	0.007413	1	0
DEC1	50514	broad.mit.edu	37	9	118164403	118164403	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:118164403G>A	uc004bjk.1	+	8	731	c.212G>A	c.(211-213)TGA>TAA	p.*71*	DEC1_uc004bjl.1_RNA	NM_017418	NP_059114	Q9P2X7	DEC1_HUMAN	deleted in esophageal cancer 1	71					negative regulation of cell proliferation					ovary(1)	1						ccagcagattgaatgtaagtg	0.085			NA											12	27					0	0	0.001855	0	0
PAPPA	5069	broad.mit.edu	37	9	118969867	118969867	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:118969867C>A	uc004bjn.2	+	3	1992	c.1611C>A	c.(1609-1611)GCC>GCA	p.A537A	PAPPA_uc011lxp.1_Silent_p.A330A|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	537	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ACAAGGAGGCCCTGATGCACT	0.433			NA											15	30					0.000308642	0.000333212	0.003163	1	0
ASTN2	23245	broad.mit.edu	37	9	119738981	119738981	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:119738981C>T	uc004bjs.1	-	8	1776	c.1675G>A	c.(1675-1677)GGA>AGA	p.G559R	ASTN2_uc004bjr.1_Missense_Mutation_p.G559R|ASTN2_uc004bjt.1_Missense_Mutation_p.G508R	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	559	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCCACTCACCCTTCACTCTGT	0.537			NA											18	21					0	0	0.007413	0	0
MRRF	92399	broad.mit.edu	37	9	125075536	125075536	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:125075536G>T	uc004bmb.2	+	6	697	c.582G>T	c.(580-582)GTG>GTT	p.V194V	MRRF_uc004bmc.2_Intron|MRRF_uc010mvz.1_RNA|MRRF_uc010mwa.2_Silent_p.V194V|MRRF_uc011lyr.1_Silent_p.V142V|MRRF_uc004bmd.2_Silent_p.V194V|MRRF_uc004bme.2_RNA	NM_138777	NP_620132	Q96E11	RRFM_HUMAN	mitochondrial ribosome recycling factor isoform	194					ribosome disassembly|translation	mitochondrion	sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						AAATGCTGGTGAAACTGGCCA	0.403			NA											11	11					5.16669e-11	7.13614e-11	0.000978	1	0
PTGS1	5742	broad.mit.edu	37	9	125154553	125154553	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:125154553G>A	uc004bmg.1	+	11	1665	c.1530G>A	c.(1528-1530)AAG>AAA	p.K510K	PTGS1_uc011lys.1_Silent_p.K448K|PTGS1_uc010mwb.1_Silent_p.K364K|PTGS1_uc004bmf.1_Silent_p.K473K|PTGS1_uc004bmh.1_Silent_p.K401K|PTGS1_uc011lyt.1_Silent_p.K401K	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	510					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	TTCTTGAAAAGTGCCATCCAA	0.483			NA											34	53					0	0	0.002836	0	0
CRB2	286204	broad.mit.edu	37	9	126133229	126133229	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:126133229C>G	uc004bnx.1	+	7	1989	c.1897C>G	c.(1897-1899)CGG>GGG	p.R633G	CRB2_uc004bnw.1_Missense_Mutation_p.R633G	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	633	Extracellular (Potential).|EGF-like 10.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CGACTGTGCCCGGCCCCATAG	0.637			NA											17	32					0	0	0.008871	0	0
ODF2	4957	broad.mit.edu	37	9	131262530	131262530	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:131262530C>G	uc011mbd.1	+	21	2797	c.2486C>G	c.(2485-2487)GCC>GGC	p.A829G	ODF2_uc004bvb.2_Missense_Mutation_p.A805G|ODF2_uc011mbe.1_Missense_Mutation_p.A824G|ODF2_uc004bvc.2_Missense_Mutation_p.A805G|ODF2_uc004bvd.3_Missense_Mutation_p.A829G|ODF2_uc004bvh.2_Missense_Mutation_p.A235G	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	829					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						TCTCCTCCTGCCTGAGGCCAC	0.552			NA											22	50					0	0	0.002299	0	0
LAMC3	10319	broad.mit.edu	37	9	133932507	133932507	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:133932507C>A	uc004caa.1	+	12	2229	c.2131C>A	c.(2131-2133)CAG>AAG	p.Q711K		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	711	Laminin EGF-like 6.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CACCTGTAACCAGCATGGCAC	0.587			NA											23	27					1.85244e-09	2.40244e-09	0.00333	1	0
LAMC3	10319	broad.mit.edu	37	9	133942388	133942388	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:133942388C>A	uc004caa.1	+	14	2487	c.2389C>A	c.(2389-2391)CCG>ACG	p.P797T		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	797	Laminin EGF-like 7.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		TTTTGGGGACCCGCTGGGGCT	0.647			NA											20	26					1.33834e-09	1.73886e-09	0.007413	1	0
OBP2B	29989	broad.mit.edu	37	9	136083520	136083520	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:136083520A>T	uc004ccz.2	-	3	319	c.277T>A	c.(277-279)TAT>AAT	p.Y93N	OBP2B_uc010nad.2_RNA|OBP2B_uc011mcy.1_Missense_Mutation_p.Y25N	NM_014581	NP_055396	Q9NPH6	OBP2B_HUMAN	odorant binding protein 2B precursor	93					chemosensory behavior|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.41e-06)|Epithelial(140;1.88e-05)		aggggCTCACAGGCGCTGTAT	0.468			NA											10	11					0	0	0.008291	0	0
BRD3	8019	broad.mit.edu	37	9	136915621	136915621	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:136915621C>A	uc004cew.2	-	5	777	c.589G>T	c.(589-591)GCT>TCT	p.A197S	BRD3_uc004cex.2_Missense_Mutation_p.A197S	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	197						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		GGGGTGGCAGCGATGACGGGC	0.657			NA	T	NUT|C15orf55	lethal midline carcinoma of young people								35	41					4.11147e-13	6.03581e-13	0.003755	1	0
KCNT1	57582	broad.mit.edu	37	9	138656922	138656922	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:138656922G>T	uc011mdq.1	+	12	1155	c.1081G>T	c.(1081-1083)GGC>TGC	p.G361C	KCNT1_uc011mdr.1_Missense_Mutation_p.G188C|KCNT1_uc010nbf.2_Missense_Mutation_p.G316C|KCNT1_uc004cgo.1_Missense_Mutation_p.G110C	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	361						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		GAAGTCAGGGGGCAACTACAG	0.607			NA											14	22					9.31168e-06	1.06762e-05	0.001855	1	0
QSOX2	169714	broad.mit.edu	37	9	139100583	139100583	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:139100583C>A	uc010nbi.2	-	12	2126	c.2088G>T	c.(2086-2088)CCG>CCT	p.P696P		NM_181701	NP_859052	Q6ZRP7	QSOX2_HUMAN	quiescin Q6 sulfhydryl oxidase 2 precursor	696					cell redox homeostasis	extracellular region|integral to membrane|nuclear membrane|plasma membrane	thiol oxidase activity			ovary(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;7.78e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.55e-07)		CTCACACGGCCGGGTGGTGGT	0.597			NA											18	15					8.00594e-06	9.20134e-06	0.007413	1	0
GPSM1	26086	broad.mit.edu	37	9	139233111	139233111	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:139233111G>T	uc004chd.2	+	7	1138	c.918G>T	c.(916-918)GAG>GAT	p.E306D	GPSM1_uc004chc.2_Missense_Mutation_p.E306D	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	306	TPR 8.|Mediates association with membranes (By similarity).				cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		AGGACTACGAGCGCGCGGCCG	0.701			NA											7	6					2.7689e-08	3.45869e-08	0.001984	1	0
NOTCH1	4851	broad.mit.edu	37	9	139401182	139401182	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:139401182C>A	uc004chz.2	-	23	3887	c.3887G>T	c.(3886-3888)CGT>CTT	p.R1296L	NOTCH1_uc004cia.1_Missense_Mutation_p.R526L	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1296	Extracellular (Potential).|EGF-like 33.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GTGACCAGCACGGCACTCGCA	0.687			NA	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			4	2					0.00909568	0.0094611	0.009096	1	0
MAN1B1	11253	broad.mit.edu	37	9	139990738	139990738	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:139990738C>A	uc004cld.2	+	4	550	c.515C>A	c.(514-516)CCC>CAC	p.P172H	MAN1B1_uc004clc.2_Missense_Mutation_p.P73H|MAN1B1_uc011meo.1_Missense_Mutation_p.P73H|MAN1B1_uc011mep.1_Missense_Mutation_p.P172H|MAN1B1_uc010ncc.2_RNA	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	172	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		CAGATTAGACCCCCAAGCCAA	0.582			NA											14	21					4.3838e-07	5.25466e-07	0.001855	1	0
CACNA1B	774	broad.mit.edu	37	9	141016023	141016023	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:141016023C>A	uc004cog.2	+	46	6737	c.6592C>A	c.(6592-6594)CGC>AGC	p.R2198S	CACNA1B_uc004coi.2_Missense_Mutation_p.R1410S	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2198	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CCTGACTCCCCGCCCCAGCAT	0.687			NA											11	8					3.86212e-05	4.31346e-05	0.008291	1	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597			NA											3	60					0	0	0.004672	0	0
DHRSX	207063	broad.mit.edu	37	X	2184953	2184953	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:2184953C>A	uc004cqf.3	-	5	473	c.424G>T	c.(424-426)GAT>TAT	p.D142Y		NM_145177	NP_660160	Q8N5I4	DHRSX_HUMAN	dehydrogenase/reductase (SDR family) X-linked	142							binding|oxidoreductase activity				0		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TCGAATCCATCTCTGGTTTTC	0.507			NA											63	16					1.12612e-26	2.14384e-26	0.00361	1	0
GYG2	8908	broad.mit.edu	37	X	2772127	2772127	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:2772127C>T	uc004cqs.1	+	5	631	c.349C>T	c.(349-351)CTC>TTC	p.L117F	GYG2_uc004cqt.1_Missense_Mutation_p.L86F|GYG2_uc004cqu.1_Missense_Mutation_p.L86F|GYG2_uc004cqv.1_5'UTR|GYG2_uc004cqw.1_Missense_Mutation_p.L77F|GYG2_uc004cqx.1_Missense_Mutation_p.L86F|GYG2_uc010ndc.1_5'Flank	NM_003918	NP_003909	O15488	GLYG2_HUMAN	glycogenin 2 isoform b	117					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|soluble fraction	glycogenin glucosyltransferase activity			ovary(1)|kidney(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGGCTCACCCTCACCAAGCT	0.502			NA											10	2					0	0	0.008291	0	0
MXRA5	25878	broad.mit.edu	37	X	3240313	3240313	+	Missense_Mutation	SNP	G	G	T	rs140078324	byFrequency	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:3240313G>T	uc004crg.3	-	5	3570	c.3413C>A	c.(3412-3414)CCG>CAG	p.P1138Q		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1138						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGTGGATGACGGAGCAACTTT	0.527			NA											31	6					3.1745e-13	4.66992e-13	0.008361	1	0
GLRA2	2742	broad.mit.edu	37	X	14625390	14625390	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:14625390G>A	uc010nep.2	+	7	1047	c.715G>A	c.(715-717)GGA>AGA	p.G239R	GLRA2_uc010neq.2_Missense_Mutation_p.G239R|GLRA2_uc004cwe.3_Missense_Mutation_p.G239R|GLRA2_uc011mio.1_Missense_Mutation_p.G150R|GLRA2_uc011mip.1_Missense_Mutation_p.G217R	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	239	Extracellular (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CTACAACACTGGTAAGTTTCT	0.388			NA											16	8					0	0	0.010504	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627341	21627341	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:21627341C>A	uc004czx.1	+	20	2334	c.2298C>A	c.(2296-2298)CGC>CGA	p.R766R	CNKSR2_uc004czw.2_Silent_p.R766R|CNKSR2_uc011mjn.1_Silent_p.R717R|CNKSR2_uc011mjo.1_Silent_p.R736R|CNKSR2_uc004czy.2_Silent_p.R358R	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	766					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						GTCAGCGCCGCTCCTGGCAGG	0.542			NA											51	9					5.57489e-27	1.06846e-26	0.00361	1	0
DMD	1756	broad.mit.edu	37	X	32827656	32827656	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:32827656G>T	uc004dda.1	-	7	847	c.603C>A	c.(601-603)AAC>AAA	p.N201K	DMD_uc004dcz.2_Missense_Mutation_p.N78K|DMD_uc004dcy.1_Missense_Mutation_p.N197K|DMD_uc004ddb.1_Missense_Mutation_p.N193K|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.N193K|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron|DMD_uc010ngr.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	201	CH 2.|Actin-binding.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ATCTGGCGATGTTGAATGCAT	0.408			NA											17	4					0.000422831	0.000455111	0.004007	1	0
DMD	1756	broad.mit.edu	37	X	32834669	32834669	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:32834669C>A	uc004dda.1	-	6	690	c.446G>T	c.(445-447)CGT>CTT	p.R149L	DMD_uc004dcz.2_Missense_Mutation_p.R26L|DMD_uc004dcy.1_Missense_Mutation_p.R145L|DMD_uc004ddb.1_Missense_Mutation_p.R141L|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.R141L|DMD_uc010ngp.1_Missense_Mutation_p.R26L|DMD_uc010ngq.1_Intron|DMD_uc010ngr.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	149	CH 2.|Actin-binding.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGGATAATTACGAGTTGATTG	0.408			NA											38	14					6.05902e-23	1.10333e-22	0.003755	1	0
FAM47A	158724	broad.mit.edu	37	X	34150258	34150258	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:34150258C>A	uc004ddg.2	-	1	171	c.138G>T	c.(136-138)CAG>CAT	p.Q46H		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	46										ovary(4)|central_nervous_system(1)	5						ATACCCAGTTCTGGGTGTCCA	0.572			NA											29	9					7.38237e-10	9.69787e-10	0.00632	1	0
SRPX	8406	broad.mit.edu	37	X	38031232	38031232	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:38031232C>A	uc004ddy.1	-	4	514	c.428G>T	c.(427-429)TGT>TTT	p.C143F	SRPX_uc004ddz.1_Missense_Mutation_p.C123F|SRPX_uc011mkh.1_Intron|SRPX_uc011mki.1_Missense_Mutation_p.C143F	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	143	Sushi 2.				cell adhesion	cell surface|membrane					0						ATAATACTCACACCGGGAGTT	0.502			NA											19	1					1.56452e-12	2.25723e-12	0.007413	1	0
GPR82	27197	broad.mit.edu	37	X	41586807	41586807	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:41586807C>A	uc004dfs.1	+	3	768	c.528C>A	c.(526-528)GTC>GTA	p.V176V	CASK_uc004dfl.3_Intron|CASK_uc004dfm.3_Intron|CASK_uc004dfn.3_Intron|GPR82_uc004dft.2_Silent_p.V176V|GPR82_uc004dfu.1_RNA	NM_080817	NP_543007	Q96P67	GPR82_HUMAN	G protein-coupled receptor 82	176	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						ACTACTCAGTCATAGAGGCTA	0.428			NA											29	7					1.17739e-12	1.70734e-12	0.005443	1	0
EFHC2	80258	broad.mit.edu	37	X	44107589	44107589	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:44107589C>G	uc004dgb.3	-	8	1130	c.1040G>C	c.(1039-1041)TGG>TCG	p.W347S		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	347	DM10 2.						calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						TTTTCTTCCCCACACATTGAT	0.353			NA											2	0					0	0	0.004672	0	0
SYN1	6853	broad.mit.edu	37	X	47466569	47466569	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:47466569G>T	uc004die.2	-	2	535	c.406C>A	c.(406-408)CAT>AAT	p.H136N	SYN1_uc004did.2_Missense_Mutation_p.H136N	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	136	C; actin-binding and synaptic-vesicle binding.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						ATTTCTCCATGGATCTTTTTC	0.428			NA											8	5					1.06961e-07	1.31304e-07	0.00308	1	0
ZNF630	57232	broad.mit.edu	37	X	47920238	47920238	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:47920238C>G	uc004div.3	-	3	354	c.102G>C	c.(100-102)AGG>AGC	p.R34S	ZNF630_uc010nhz.1_RNA|ZNF630_uc004diw.2_5'UTR	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	34	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						GCATCACATCCCTATGCAGGG	0.493			NA											11	3					0	0	0.008291	0	0
PCSK1N	27344	broad.mit.edu	37	X	48689804	48689804	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:48689804G>A	uc004dkz.2	-	3	675	c.649C>T	c.(649-651)CGC>TGC	p.R217C		NM_013271	NP_037403	Q9UHG2	PCSK1_HUMAN	proprotein convertase subtilisin/kexin type 1	217					neuropeptide signaling pathway	extracellular space|soluble fraction	receptor binding				0						CGGCGGAGGCGGCGCGGGGCT	0.726			NA											3	4					0	0	0.004672	0	0
AKAP4	8852	broad.mit.edu	37	X	49955701	49955701	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:49955701G>T	uc004dow.1	-	6	2591	c.2467C>A	c.(2467-2469)CAA>AAA	p.Q823K	AKAP4_uc004dov.1_Missense_Mutation_p.Q440K|AKAP4_uc010njp.1_Missense_Mutation_p.Q645K|AKAP4_uc004dou.1_Missense_Mutation_p.Q814K	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	823					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					ATGACCTCTTGAAGAAGACCT	0.512			NA											43	12					3.61848e-18	6.08349e-18	0.007835	1	0
ITIH5L	347365	broad.mit.edu	37	X	54777568	54777568	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:54777568G>C	uc004dtj.2	-	12	3628	c.3598C>G	c.(3598-3600)CGC>GGC	p.R1200G		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	1200					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						GGCCCAAGGCGGAGGGTAAGG	0.642			NA											6	3					0	0	0.001168	0	0
MAGED2	10916	broad.mit.edu	37	X	54838685	54838685	+	Splice_Site	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:54838685G>T	uc004dtk.1	+	7	1179	c.1085_splice	c.e7+1	p.T362_splice	MAGED2_uc004dtl.1_Splice_Site_p.T362_splice|MAGED2_uc004dtm.1_Splice_Site_p.T277_splice|MAGED2_uc010nkc.1_Splice_Site_p.T362_splice|MAGED2_uc004dtn.1_Splice_Site_p.T362_splice|MAGED2_uc004dto.1_Splice_Site_p.T336_splice|SNORA11_uc004dtp.1_5'Flank	NM_177433	NP_803182	Q9UNF1	MAGD2_HUMAN	melanoma antigen family D, 2											ovary(2)|breast(1)	3						TACTGGGAACGTAAGCTGGGA	0.493			NA											11	4					1.58986e-06	1.87881e-06	0.008291	1	0
TRO	7216	broad.mit.edu	37	X	54954192	54954192	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:54954192A>G	uc004dtq.2	+	11	1963	c.1856A>G	c.(1855-1857)AAA>AGA	p.K619R	TRO_uc004dts.2_Missense_Mutation_p.K619R|TRO_uc004dtr.2_Missense_Mutation_p.K619R|TRO_uc004dtt.2_RNA|TRO_uc004dtu.2_RNA|TRO_uc004dtv.2_Missense_Mutation_p.K222R|TRO_uc011mok.1_Missense_Mutation_p.K150R|TRO_uc004dtw.2_Missense_Mutation_p.K222R|TRO_uc004dtx.2_Missense_Mutation_p.K2R	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	619	MAGE.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						AGCAAGATGAAAGTCCTCAAG	0.527			NA											14	3					0	0	0.00245	0	0
USP51	158880	broad.mit.edu	37	X	55513782	55513782	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:55513782C>A	uc004dun.1	-	2	1670	c.1591G>T	c.(1591-1593)GAG>TAG	p.E531*	USP51_uc011moo.1_Nonsense_Mutation_p.E235*	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	531					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						TCAGCCCTCTCTGGGTTCTGG	0.522			NA											14	4					4.3838e-07	5.25466e-07	0.001855	1	0
FAM123B	139285	broad.mit.edu	37	X	63412928	63412928	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:63412928C>A	uc004dvo.2	-	2	512	c.239G>T	c.(238-240)GGT>GTT	p.G80V		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	80					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						TTTCCCAGAACCTTTGCTCCG	0.532			NA											29	5					3.73988e-18	6.2654e-18	0.00632	1	0
HEPH	9843	broad.mit.edu	37	X	65411974	65411974	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:65411974G>A	uc011moz.1	+	7	1135	c.1075G>A	c.(1075-1077)GGC>AGC	p.G359S	HEPH_uc004dwn.2_Missense_Mutation_p.G359S|HEPH_uc004dwo.2_Missense_Mutation_p.G89S|HEPH_uc010nkr.2_Missense_Mutation_p.G359S|HEPH_uc011mpa.1_Missense_Mutation_p.G359S	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	356	Extracellular (Potential).|Plastocyanin-like 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TCCTTCAGATGGCATGCAGGC	0.502			NA											18	8					0	0	0.007413	0	0
HEPH	9843	broad.mit.edu	37	X	65480040	65480040	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:65480040C>A	uc011moz.1	+	19	3204	c.3144C>A	c.(3142-3144)CAC>CAA	p.H1048Q	HEPH_uc004dwn.2_Missense_Mutation_p.H1048Q|HEPH_uc004dwo.2_Missense_Mutation_p.H778Q|HEPH_uc010nkr.2_Missense_Mutation_p.H856Q|HEPH_uc011mpa.1_Missense_Mutation_p.H1048Q	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	1045	Extracellular (Potential).|Plastocyanin-like 6.	Copper 3; type 3 (By similarity).			cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						GGCTGATGCACTGCCATGTGA	0.507			NA											32	2					1.06801e-11	1.50579e-11	0.009535	1	0
OTUD6A	139562	broad.mit.edu	37	X	69282386	69282386	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:69282386G>T	uc004dxu.1	+	1	46	c.12G>T	c.(10-12)CCG>CCT	p.P4P		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	4										lung(1)|skin(1)	2						TGGATGATCCGAAGAGTGAAC	0.557			NA											7	6					0.000274275	0.000296559	0.004482	1	0
MED12	9968	broad.mit.edu	37	X	70341558	70341558	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:70341558C>A	uc004dyy.2	+	7	1192	c.993C>A	c.(991-993)ACC>ACA	p.T331T	MED12_uc011mpq.1_Silent_p.T331T|MED12_uc004dyz.2_Silent_p.T331T|MED12_uc004dza.2_Silent_p.T178T	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	331					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					TACCCACCACCCCTGCTCCTC	0.567			NA											36	26					6.84511e-11	9.38156e-11	0.003271	1	0
MED12	9968	broad.mit.edu	37	X	70352234	70352234	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:70352234G>T	uc004dyy.2	+	31	4460	c.4261G>T	c.(4261-4263)GAG>TAG	p.E1421*	MED12_uc011mpq.1_Nonsense_Mutation_p.E1421*|MED12_uc004dyz.2_Nonsense_Mutation_p.E1421*|MED12_uc004dza.2_Nonsense_Mutation_p.E1268*|MED12_uc010nla.2_Nonsense_Mutation_p.E47*	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1421					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CAGCTCTCTAGAGCGCTCTGG	0.562			NA											13	21					4.36969e-10	5.78294e-10	0.001855	1	0
MED12	9968	broad.mit.edu	37	X	70352315	70352315	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:70352315G>T	uc004dyy.2	+	31	4541	c.4342G>T	c.(4342-4344)GGG>TGG	p.G1448W	MED12_uc011mpq.1_Missense_Mutation_p.G1448W|MED12_uc004dyz.2_Missense_Mutation_p.G1448W|MED12_uc004dza.2_Missense_Mutation_p.G1295W|MED12_uc010nla.2_Missense_Mutation_p.G74W	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1448					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					AAAGGCTGCTGGGGAAGAATT	0.542			NA											9	9					2.17888e-05	2.46835e-05	0.006214	1	0
NONO	4841	broad.mit.edu	37	X	70517785	70517786	+	Missense_Mutation	DNP	TG	TG	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:70517785_70517786TG>AT	uc004dzo.2	+	10	1838_1839	c.1128_1129TG>AT	c.(1126-1131)GATGCG>GAATCG	p.376_377DA>ES	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Missense_Mutation_p.376_377DA>ES|NONO_uc004dzp.2_Missense_Mutation_p.376_377DA>ES|NONO_uc011mpv.1_Missense_Mutation_p.287_288DA>ES|NONO_uc004dzq.2_Missense_Mutation_p.245_246DA>ES	NM_001145408	NP_001138880	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	376_377		Breakpoint for translocation to form NONO-TFE3.			DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	ovary(2)|kidney(2)	4	Renal(35;0.156)					CCTTCCCTGATGCGGTATATCT	0.53			NA	T	TFE3	papillary renal cancer								5	15					0	0	0.004672	0	0
OGT	8473	broad.mit.edu	37	X	70784509	70784509	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:70784509G>T	uc004eaa.1	+	19	2712	c.2495G>T	c.(2494-2496)CGT>CTT	p.R832L	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.R822L|OGT_uc004eac.2_Missense_Mutation_p.R693L|OGT_uc004ead.2_Missense_Mutation_p.R451L	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	832					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					GTAACCACCCGTTCTCAGTAC	0.398			NA											33	18					2.61193e-14	3.9568e-14	0.009535	1	0
NHSL2	340527	broad.mit.edu	37	X	71360077	71360077	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:71360077G>T	uc011mqa.1	+	6	2679	c.2679G>T	c.(2677-2679)GAG>GAT	p.E893D	NHSL2_uc004eak.1_Missense_Mutation_p.E527D|NHSL2_uc010nli.2_Missense_Mutation_p.E662D	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	893											0	Renal(35;0.156)					CTGTTCCTGAGGAGTATGCAC	0.557			NA											7	75					5.18039e-06	6.01703e-06	0.00308	1	0
CDX4	1046	broad.mit.edu	37	X	72673480	72673480	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:72673480G>T	uc011mqk.1	+	2	630	c.630G>T	c.(628-630)CTG>CTT	p.L210L		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	210	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					CAGTTAACCTGGGCCTTTCCG	0.398			NA											20	12					1.01871e-10	1.38951e-10	0.008871	1	0
RLIM	51132	broad.mit.edu	37	X	73811407	73811407	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:73811407G>T	uc004ebu.2	-	5	2033	c.1743C>A	c.(1741-1743)AAC>AAA	p.N581K	RLIM_uc004ebw.2_Missense_Mutation_p.N581K	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	581	RING-type.				random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						TACGAAGTTTGTTGCCTTCTG	0.403	Esophageal Squamous(169;1899 1923 14997 18818 32118)		NA											27	36					6.04164e-23	1.10299e-22	0.002096	1	0
KIAA2022	340533	broad.mit.edu	37	X	73963343	73963343	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:73963343G>T	uc004eby.2	-	3	1666	c.1049C>A	c.(1048-1050)TCT>TAT	p.S350Y		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	350					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CCCACTCTTAGACTCTCGCTT	0.468			NA											57	40					2.17126e-26	4.117e-26	0.00361	1	0
MAGEE2	139599	broad.mit.edu	37	X	75003851	75003851	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:75003851C>A	uc004ecj.1	-	1	1221	c.1036G>T	c.(1036-1038)GAG>TAG	p.E346*		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	346	MAGE 2.									ovary(1)|skin(1)	2						AACACATCCTCAAATTCTTTG	0.418			NA											43	35					8.16277e-20	1.421e-19	0.006999	1	0
MAGEE1	57692	broad.mit.edu	37	X	75650314	75650314	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:75650314C>A	uc004ecm.1	+	1	2198	c.1991C>A	c.(1990-1992)ACC>AAC	p.T664N		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	664	MAGE 1.		T -> N (in a breast cancer sample; somatic mutation).			dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane		p.T664N(1)		breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CTAGAAACCACCAAGATGAAA	0.433			NA											16	14					5.3912e-06	6.23645e-06	0.006122	1	0
ATRX	546	broad.mit.edu	37	X	76938803	76938803	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:76938803C>A	uc004ecp.3	-	9	2177	c.1945G>T	c.(1945-1947)GAG>TAG	p.E649*	ATRX_uc004ecq.3_Nonsense_Mutation_p.E611*|ATRX_uc004eco.3_Nonsense_Mutation_p.E434*|ATRX_uc004ecr.2_Nonsense_Mutation_p.E581*|ATRX_uc010nlx.1_Nonsense_Mutation_p.E620*|ATRX_uc010nly.1_Nonsense_Mutation_p.E594*	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	649					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TCAGATTCCTCTAAAAGTAAT	0.393			NA	Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						199	142					2.00895e-71	4.34103e-71	0.00361	1	0
MAGT1	84061	broad.mit.edu	37	X	77109424	77109424	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:77109424G>A	uc004fof.2	-	7	958	c.896C>T	c.(895-897)GCT>GTT	p.A299V	MAGT1_uc004fog.3_Intron	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	267					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						GTGTGTTTCAGCTACAAACTG	0.348			NA											76	54					0	0	0.00361	0	0
ATP7A	538	broad.mit.edu	37	X	77267028	77267028	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:77267028C>A	uc004ecx.3	+	9	2189	c.2029C>A	c.(2029-2031)CAC>AAC	p.H677N	ATP7A_uc004ecw.2_3'UTR	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	677	Extracellular (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						TATGGACCACCACTTTGCAAC	0.378			NA											161	127					9.9684e-85	2.16387e-84	0.00361	1	0
ATP7A	538	broad.mit.edu	37	X	77298190	77298190	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:77298190C>A	uc004ecx.3	+	20	4069	c.3909C>A	c.(3907-3909)ATC>ATA	p.I1303I		NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	1303	Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						GAGATGGAATCAATGACTCCC	0.463			NA											144	91					2.29838e-65	4.93648e-65	0.00361	1	0
TAF9B	51616	broad.mit.edu	37	X	77387130	77387130	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:77387130C>A	uc004eda.2	-	7	804	c.733G>T	c.(733-735)GAT>TAT	p.D245Y		NM_015975	NP_057059	Q9HBM6	TAF9B_HUMAN	transcription associated factor 9B	245	Poly-Asp.				negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell growth|transcription initiation, DNA-dependent	transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding				0						TTGTCATCATCATCTTCATGT	0.358			NA											105	87					6.17869e-53	1.3132e-52	0.00361	1	0
CYSLTR1	10800	broad.mit.edu	37	X	77528599	77528599	+	Silent	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:77528599G>C	uc004edb.2	-	3	1045	c.645C>G	c.(643-645)ACC>ACG	p.T215T	CYSLTR1_uc010nma.2_Silent_p.T215T|CYSLTR1_uc010nmb.2_Silent_p.T215T	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	215	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	TTTTTAGTAAGGTCAAAATGA	0.323			NA											21	9					0	0	0.008871	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913990	77913990	+	Translation_Start_Site	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:77913990C>A	uc004edc.1	-	2	224	c.-72G>T	c.(-74--70)CAGGA>CATGA			NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5								nucleic acid binding|zinc ion binding			ovary(1)	1						GAGATCCTTCCTGAAAGCTGC	0.493			NA											3	8					0.004672	0.00490267	0.004672	1	0
GPR174	84636	broad.mit.edu	37	X	78427217	78427217	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:78427217T>A	uc004edg.1	+	1	749	c.713T>A	c.(712-714)GTA>GAA	p.V238E		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	238	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						TGTGCAGGGGTATTCCTAATT	0.408			NA								HNSCC(63;0.18)			32	63					0	0	0.009535	0	0
ITM2A	9452	broad.mit.edu	37	X	78622629	78622629	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:78622629C>T	uc004edh.2	-	1	419	c.84G>A	c.(82-84)ACG>ACA	p.T28T	ITM2A_uc011mqr.1_Silent_p.T28T	NM_004867	NP_004858	O43736	ITM2A_HUMAN	integral membrane protein 2A	28						integral to membrane	protein binding			lung(2)	2						GAGTTCTGACCGTGCGGCTCA	0.587			NA											6	10					0	0	0.001168	0	0
TBX22	50945	broad.mit.edu	37	X	79286260	79286260	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:79286260C>A	uc010nmg.1	+	9	1347	c.1213C>A	c.(1213-1215)CCA>ACA	p.P405T	TBX22_uc004edi.1_Missense_Mutation_p.P285T|TBX22_uc004edj.1_Missense_Mutation_p.P405T	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	405					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						GTCTTTAGCCCCACTCATGAT	0.443			NA											133	85					1.13993e-56	2.43367e-56	0.00361	1	0
FAM46D	169966	broad.mit.edu	37	X	79698120	79698120	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:79698120C>A	uc004edl.1	+	5	416	c.82C>A	c.(82-84)CAT>AAT	p.H28N	FAM46D_uc004edm.1_Missense_Mutation_p.H28N	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	28										lung(2)	2						AATTCCAATTCATGGAAAGGG	0.373			NA											10	30					9.70103e-10	1.27086e-09	0.008291	1	0
BRWD3	254065	broad.mit.edu	37	X	79952243	79952243	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:79952243G>A	uc004edt.2	-	26	3326	c.3063C>T	c.(3061-3063)TCC>TCT	p.S1021S	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Silent_p.S617S|BRWD3_uc004edp.2_Silent_p.S850S|BRWD3_uc004edq.2_Silent_p.S617S|BRWD3_uc010nmj.1_Silent_p.S617S|BRWD3_uc004edr.2_Silent_p.S691S|BRWD3_uc004eds.2_Silent_p.S617S|BRWD3_uc004edu.2_Silent_p.S691S|BRWD3_uc004edv.2_Silent_p.S617S|BRWD3_uc004edw.2_Silent_p.S617S|BRWD3_uc004edx.2_Silent_p.S617S|BRWD3_uc004edy.2_Silent_p.S617S|BRWD3_uc004edz.2_Silent_p.S691S|BRWD3_uc004eea.2_Silent_p.S691S|BRWD3_uc004eeb.2_Silent_p.S617S	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1021										ovary(4)	4						CTCACTTAATGGAAAAAGATT	0.388			NA											9	20					0	0	0.008291	0	0
BRWD3	254065	broad.mit.edu	37	X	79960191	79960191	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:79960191G>T	uc004edt.2	-	23	2970	c.2707C>A	c.(2707-2709)CAG>AAG	p.Q903K	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.Q499K|BRWD3_uc004edp.2_Missense_Mutation_p.Q732K|BRWD3_uc004edq.2_Missense_Mutation_p.Q499K|BRWD3_uc010nmj.1_Missense_Mutation_p.Q499K|BRWD3_uc004edr.2_Missense_Mutation_p.Q573K|BRWD3_uc004eds.2_Missense_Mutation_p.Q499K|BRWD3_uc004edu.2_Missense_Mutation_p.Q573K|BRWD3_uc004edv.2_Missense_Mutation_p.Q499K|BRWD3_uc004edw.2_Missense_Mutation_p.Q499K|BRWD3_uc004edx.2_Missense_Mutation_p.Q499K|BRWD3_uc004edy.2_Missense_Mutation_p.Q499K|BRWD3_uc004edz.2_Missense_Mutation_p.Q573K|BRWD3_uc004eea.2_Missense_Mutation_p.Q573K|BRWD3_uc004eeb.2_Missense_Mutation_p.Q499K	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	903										ovary(4)	4						TTTCTAGTCTGCTTAGGTTTC	0.318			NA											32	23					4.62619e-21	8.20385e-21	0.004289	1	0
CYLC1	1538	broad.mit.edu	37	X	83128432	83128432	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:83128432C>A	uc004eei.1	+	4	737	c.716C>A	c.(715-717)TCA>TAA	p.S239*	CYLC1_uc004eeh.1_Nonsense_Mutation_p.S238*	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	239					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						GAGATTTGCTCAGAAAATAGT	0.333			NA											11	28					4.68919e-08	5.81656e-08	0.008291	1	0
RPS6KA6	27330	broad.mit.edu	37	X	83371266	83371266	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:83371266G>A	uc004eej.1	-	12	1056	c.979C>T	c.(979-981)CAT>TAT	p.H327Y	RPS6KA6_uc011mqt.1_Missense_Mutation_p.H327Y|RPS6KA6_uc011mqu.1_Missense_Mutation_p.H224Y	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	327	Protein kinase 1.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						AAAAACAGATGTCTTTTGATT	0.284			NA											4	26					0	0	0.009096	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83411147	83411147	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:83411147T>A	uc004eej.1	-	3	271	c.194A>T	c.(193-195)TAT>TTT	p.Y65F	RPS6KA6_uc011mqt.1_Missense_Mutation_p.Y65F|RPS6KA6_uc011mqu.1_5'UTR|RPS6KA6_uc010nmo.1_RNA	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	65					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						TGCTTTCTCATAGCCTTCCTT	0.368			NA											11	30					0	0	0.000978	0	0
HDX	139324	broad.mit.edu	37	X	83723981	83723981	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:83723981A>G	uc004eek.1	-	3	859	c.750T>C	c.(748-750)ATT>ATC	p.I250I	HDX_uc011mqv.1_Silent_p.I250I|HDX_uc004eel.1_Silent_p.I192I	NM_144657	NP_653258	Q7Z353	HDX_HUMAN	highly divergent homeobox	250						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)	2						AAGGGTCTCTAATAGTTGGCT	0.438	Pancreas(53;231 1169 36156 43751 51139)		NA											97	58					0	0	0.00361	0	0
SATL1	340562	broad.mit.edu	37	X	84363299	84363299	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:84363299G>A	uc011mqx.1	-	1	676	c.676C>T	c.(676-678)CCA>TCA	p.P226S	SATL1_uc004een.2_Missense_Mutation_p.P226S	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	39	Gln-rich.						N-acetyltransferase activity			breast(2)	2						CTTATGCCTGGTTGGCTGGGG	0.517			NA											80	57					0	0	0.00361	0	0
ZNF711	7552	broad.mit.edu	37	X	84510740	84510740	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:84510740T>A	uc004eeo.2	+	4	902	c.555T>A	c.(553-555)ACT>ACA	p.T185T	ZNF711_uc004eep.2_Silent_p.T185T|ZNF711_uc004eeq.2_Silent_p.T185T	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	185					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						CTACAGTTACTATAAAAACCG	0.388			NA											24	46					0	0	0.00333	0	0
KLHL4	56062	broad.mit.edu	37	X	86772993	86772993	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:86772993G>T	uc004efb.2	+	1	279	c.97G>T	c.(97-99)GGA>TGA	p.G33*	KLHL4_uc004efa.2_Nonsense_Mutation_p.G33*	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	33						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CACCAACACTGGAAGCTGTCT	0.493			NA											34	98					1.76533e-06	2.08443e-06	0.003755	1	0
CPXCR1	53336	broad.mit.edu	37	X	88008905	88008905	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:88008905G>T	uc004efd.3	+	3	749	c.490G>T	c.(490-492)GCT>TCT	p.A164S	CPXCR1_uc004efc.3_Missense_Mutation_p.A164S	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	164						intracellular	zinc ion binding			ovary(3)	3						TTTCTCTCAGGCTGCAGGGTG	0.388			NA											16	32					1.33834e-09	1.73886e-09	0.007413	1	0
TGIF2LX	90316	broad.mit.edu	37	X	89177276	89177276	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:89177276C>G	uc004efe.2	+	2	241	c.192C>G	c.(190-192)ATC>ATG	p.I64M		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	64	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						CCGTTAAGATCCTCCGCGACT	0.463			NA											46	33					0	0	0.00361	0	0
TGIF2LX	90316	broad.mit.edu	37	X	89177530	89177530	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:89177530G>A	uc004efe.2	+	2	495	c.446G>A	c.(445-447)AGT>AAT	p.S149N		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	149						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TCAGGGCCCAGTGGTCCAGAC	0.602			NA											20	60					0	0	0.001882	0	0
PCDH11X	27328	broad.mit.edu	37	X	91133695	91133695	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:91133695C>A	uc004efk.1	+	2	3301	c.2456C>A	c.(2455-2457)GCT>GAT	p.A819D	PCDH11X_uc004efl.1_Missense_Mutation_p.A819D|PCDH11X_uc004efo.1_Missense_Mutation_p.A819D|PCDH11X_uc010nmv.1_Missense_Mutation_p.A819D|PCDH11X_uc004efm.1_Missense_Mutation_p.A819D|PCDH11X_uc004efn.1_Missense_Mutation_p.A819D|PCDH11X_uc004efh.1_Missense_Mutation_p.A819D|PCDH11X_uc004efj.1_Missense_Mutation_p.A819D	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	819	Helical; (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GCAGCTGTTGCTGGCACCATA	0.463	NSCLC(38;925 1092 2571 38200 45895)		NA											42	69					5.85753e-14	8.80794e-14	0.00361	1	0
PCDH11X	27328	broad.mit.edu	37	X	91133962	91133962	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:91133962C>G	uc004efk.1	+	2	3568	c.2723C>G	c.(2722-2724)CCT>CGT	p.P908R	PCDH11X_uc004efl.1_Missense_Mutation_p.P908R|PCDH11X_uc004efo.1_Missense_Mutation_p.P908R|PCDH11X_uc010nmv.1_Missense_Mutation_p.P908R|PCDH11X_uc004efm.1_Missense_Mutation_p.P908R|PCDH11X_uc004efn.1_Missense_Mutation_p.P908R|PCDH11X_uc004efh.1_Missense_Mutation_p.P908R|PCDH11X_uc004efj.1_Missense_Mutation_p.P908R	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	908	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CTAGACCTTCCTATTGATCTA	0.413	NSCLC(38;925 1092 2571 38200 45895)		NA											50	114					0	0	0.00361	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873433	91873433	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:91873433G>T	uc004efk.1	+	7	4383	c.3538G>T	c.(3538-3540)GCC>TCC	p.A1180S	PCDH11X_uc004efl.1_Missense_Mutation_p.A1170S|PCDH11X_uc004efo.1_Missense_Mutation_p.A1143S|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Missense_Mutation_p.A1172S|PCDH11X_uc004efn.1_Missense_Mutation_p.A1162S	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1180	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ACTGTCACAGGCCTCTACTCA	0.592	NSCLC(38;925 1092 2571 38200 45895)		NA											39	96					4.92203e-23	8.99739e-23	0.00623	1	0
FAM133A	286499	broad.mit.edu	37	X	92964479	92964479	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:92964479G>T	uc004efr.1	+	4	374	c.61G>T	c.(61-63)GGC>TGC	p.G21C		NM_173698	NP_775969	Q8N9E0	F133A_HUMAN	hypothetical protein LOC286499	21											0						CAGATGGAGAGGCCCAACTCA	0.458			NA											16	19					9.16793e-09	1.15737e-08	0.00499	1	0
DIAPH2	1730	broad.mit.edu	37	X	96212929	96212929	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:96212929G>C	uc004efu.3	+	16	2113	c.1717G>C	c.(1717-1719)GGA>CGA	p.G573R	DIAPH2_uc004eft.3_Missense_Mutation_p.G573R	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	573	FH1.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						ACCTCTACCCGGAGGAGCTCC	0.592			NA											19	16					0	0	0.006122	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911707	100911707	+	Silent	SNP	G	G	T	rs143836164	byFrequency	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:100911707G>T	uc004eid.2	-	3	1223	c.868C>A	c.(868-870)CGG>AGG	p.R290R	ARMCX2_uc004eie.3_Silent_p.R290R|ARMCX2_uc004eif.3_Silent_p.R290R|ARMCX2_uc004eig.3_Silent_p.R290R|ARMCX2_uc010nnt.2_Silent_p.R290R	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	290						integral to membrane	binding			ovary(6)	6						CCCCCATTCCGGGACCTGGTT	0.592			NA											47	118					8.48111e-28	1.64988e-27	0.00361	1	0
ARMCX5	64860	broad.mit.edu	37	X	101857907	101857907	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:101857907G>T	uc004ejg.2	+	6	1719	c.838G>T	c.(838-840)GAG>TAG	p.E280*	ARMCX5_uc004ejh.2_Nonsense_Mutation_p.E280*	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	280							binding			ovary(1)	1						GACCTTAGCTGAGATCAAAAA	0.458			NA											63	63					6.12789e-21	1.08264e-20	0.00361	1	0
ARMCX5	64860	broad.mit.edu	37	X	101857943	101857943	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:101857943G>T	uc004ejg.2	+	6	1755	c.874G>T	c.(874-876)GGG>TGG	p.G292W	ARMCX5_uc004ejh.2_Missense_Mutation_p.G292W	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	292							binding			ovary(1)	1						GGAAAAGTATGGGCCTAATCC	0.443			NA											61	54					6.60958e-23	1.20205e-22	0.00361	1	0
GLRA4	441509	broad.mit.edu	37	X	102968568	102968568	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:102968568C>A	uc011mse.1	-	8	1384	c.963G>T	c.(961-963)TGG>TGT	p.W321C	TMEM31_uc004elh.2_Missense_Mutation_p.S50Y	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	321	Cytoplasmic (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						ACACAGCCATCCAGATGTCGA	0.463			NA											25	61					7.87624e-14	1.17689e-13	0.00278	1	0
TMEM31	203562	broad.mit.edu	37	X	102968923	102968923	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:102968923C>A	uc004elh.2	+	3	695	c.504C>A	c.(502-504)TTC>TTA	p.F168L	GLRA4_uc011mse.1_Intron	NM_182541	NP_872347	Q5JXX7	TMM31_HUMAN	transmembrane protein 31	168	Helical; (Potential).					integral to membrane					0						tgatcttcttctgattctttt	0.129			NA											8	7					1.06961e-07	1.31304e-07	0.00308	1	0
ESX1	80712	broad.mit.edu	37	X	103495214	103495214	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:103495214A>C	uc004ely.2	-	4	974	c.916T>G	c.(916-918)TGG>GGG	p.W306G		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	306	7.|15 X 9 AA tandem repeats of P-P-x-x-P-x- P-P-x.				negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATGGGCGGCCAGGGTGGCACA	0.766	Pancreas(200;1705 2227 25194 28471 45274)		NA											5	15					0	0	0.000602	0	0
ESX1	80712	broad.mit.edu	37	X	103495217	103495217	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:103495217G>T	uc004ely.2	-	4	971	c.913C>A	c.(913-915)CCC>ACC	p.P305T		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	305	7.|15 X 9 AA tandem repeats of P-P-x-x-P-x- P-P-x.				negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCGGCCAGGGTGGCACAGGC	0.761	Pancreas(200;1705 2227 25194 28471 45274)		NA											7	17					8.12818e-05	8.99342e-05	0.001984	1	0
COL4A6	1288	broad.mit.edu	37	X	107402958	107402958	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:107402958G>T	uc004enw.3	-	44	4652	c.4549C>A	c.(4549-4551)CCC>ACC	p.P1517T	COL4A6_uc004env.3_Missense_Mutation_p.P1516T|COL4A6_uc011msn.1_Missense_Mutation_p.P1492T|COL4A6_uc010npk.2_Missense_Mutation_p.P1459T|COL4A6_uc011msm.1_Missense_Mutation_p.P51T|COL4A6_uc010npj.2_5'UTR	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1517	Collagen IV NC1.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CTGAAGCGGGGCAGACAGGAG	0.567	Melanoma(87;1895 1945 2589 7165)		NA							Alport_syndrome_with_Diffuse_Leiomyomatosis				46	130					2.47872e-24	4.62003e-24	0.002522	1	0
COL4A6	1288	broad.mit.edu	37	X	107422547	107422547	+	Silent	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:107422547G>A	uc004enw.3	-	26	2359	c.2256C>T	c.(2254-2256)GAC>GAT	p.D752D	COL4A6_uc004env.3_Silent_p.D751D|COL4A6_uc011msn.1_Silent_p.D751D|COL4A6_uc010npk.2_Silent_p.D751D	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	752	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CACCAAAGATGTCACCAGTGG	0.547	Melanoma(87;1895 1945 2589 7165)		NA							Alport_syndrome_with_Diffuse_Leiomyomatosis				19	60					0	0	0.001882	0	0
COL4A5	1287	broad.mit.edu	37	X	107909782	107909782	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:107909782C>A	uc004enz.1	+	39	3713	c.3511C>A	c.(3511-3513)CAA>AAA	p.Q1171K	COL4A5_uc011mso.1_Missense_Mutation_p.Q1171K	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1171	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CAAACCCGGTCAAGATGGTAT	0.443			NA							Alport_syndrome_with_Diffuse_Leiomyomatosis				11	10					2.80697e-09	3.62059e-09	0.000978	1	0
ZCCHC12	170261	broad.mit.edu	37	X	117959831	117959831	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:117959831C>T	uc004equ.2	+	4	1097	c.624C>T	c.(622-624)AAC>AAT	p.N208N		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						GGCTTCCCAACTTTCTGGAGT	0.458			NA											57	52					0	0	0.00361	0	0
LONRF3	79836	broad.mit.edu	37	X	118109535	118109535	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:118109535C>G	uc004eqw.2	+	1	823	c.792C>G	c.(790-792)CTC>CTG	p.L264L	LONRF3_uc004eqx.2_Silent_p.L264L|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_5'Flank	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	264	TPR 2.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						CGGCACTGCTCAAGTACAACG	0.667			NA											14	6					0	0	0.00499	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221720	118221720	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:118221720G>T	uc004era.3	-	11	3473	c.3473C>A	c.(3472-3474)GCT>GAT	p.A1158D		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1158										ovary(4)|skin(1)	5						GAACTGGGTAGCATATTGGGG	0.468			NA											39	26					3.33393e-15	5.14358e-15	0.004878	1	0
KIAA1210	57481	broad.mit.edu	37	X	118223080	118223080	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:118223080G>T	uc004era.3	-	11	2113	c.2113C>A	c.(2113-2115)CAA>AAA	p.Q705K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	705										ovary(4)|skin(1)	5						AAAGCTTCTTGATCTTCTAAC	0.433			NA											52	28					1.27334e-21	2.28079e-21	0.00361	1	0
GRIA3	2892	broad.mit.edu	37	X	122551485	122551485	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:122551485C>A	uc004etq.3	+	12	2026	c.1733C>A	c.(1732-1734)CCT>CAT	p.P578H	GRIA3_uc004etr.3_Missense_Mutation_p.P578H|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.P562H	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	578	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AGGTTCAGTCCTTATGAATGG	0.418			NA											102	233					5.10254e-61	1.09099e-60	0.00361	1	0
THOC2	57187	broad.mit.edu	37	X	122760512	122760512	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:122760512G>T	uc004etu.2	-	24	2791	c.2759C>A	c.(2758-2760)CCC>CAC	p.P920H		NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	920	Potential.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TTTATTTGGGGGCTACAAAGA	0.338			NA											18	36					3.62473e-10	4.82846e-10	0.001882	1	0
XIAP	331	broad.mit.edu	37	X	123041011	123041011	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:123041011C>A	uc010nqu.2	+	7	1600	c.1474C>A	c.(1474-1476)CAA>AAA	p.Q492K	XIAP_uc004etx.2_Missense_Mutation_p.Q492K|XIAP_uc010nqv.2_Missense_Mutation_p.Q118K	NM_001167	NP_001158	P98170	XIAP_HUMAN	baculoviral IAP repeat-containing protein 4	492					anti-apoptosis|apoptosis|induction of apoptosis by intracellular signals|response to DNA damage stimulus	cytosol	caspase inhibitor activity|ligase activity|protein binding|zinc ion binding			ovary(1)|lung(1)	2						TACTTTCAAGCAAAAAATTTT	0.353			NA							X-linked_Lymphoproliferative_syndrome				18	13					6.94344e-10	9.1297e-10	0.006122	1	0
ODZ1	10178	broad.mit.edu	37	X	123554363	123554363	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:123554363C>A	uc004euj.2	-	24	4823	c.4759G>T	c.(4759-4761)GTG>TTG	p.V1587L	ODZ1_uc011muj.1_Missense_Mutation_p.V1593L|ODZ1_uc010nqy.2_Missense_Mutation_p.V1594L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1587	YD 2.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CGAATGTGCACTGAATTGCCA	0.493			NA											21	42					0.000132079	0.000145686	0.008871	1	0
SMARCA1	6594	broad.mit.edu	37	X	128624153	128624153	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:128624153A>C	uc004eun.3	-	15	1945	c.1832T>G	c.(1831-1833)ATT>AGT	p.I611S	SMARCA1_uc004eup.3_Missense_Mutation_p.I599S|SMARCA1_uc011muk.1_Missense_Mutation_p.I611S|SMARCA1_uc011mul.1_Missense_Mutation_p.I599S	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	611	Helicase C-terminal.				ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						CTTCTGACCAATACGATGTGC	0.353			NA											40	15					0	0	0.006999	0	0
SMARCA1	6594	broad.mit.edu	37	X	128652416	128652416	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:128652416A>G	uc004eun.3	-	2	296	c.183T>C	c.(181-183)GTT>GTC	p.V61V	SMARCA1_uc004eup.3_Silent_p.V61V|SMARCA1_uc011muk.1_Silent_p.V61V|SMARCA1_uc011mul.1_Silent_p.V61V	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	61					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						GAAATGAAGAAACGTTTTTCT	0.308			NA											28	18					0	0	0.005443	0	0
SMARCA1	6594	broad.mit.edu	37	X	128657242	128657242	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:128657242C>T	uc004eun.3	-	1	219	c.106G>A	c.(106-108)GAG>AAG	p.E36K	SMARCA1_uc004eup.3_Missense_Mutation_p.E36K|SMARCA1_uc011muk.1_Missense_Mutation_p.E36K|SMARCA1_uc011mul.1_Missense_Mutation_p.E36K	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	36					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						GCTCCCTCCTCCTGAGAGGTG	0.677			NA											34	105					0	0	0.002445	0	0
ZDHHC9	51114	broad.mit.edu	37	X	128957772	128957772	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:128957772G>T	uc004euv.2	-	4	739	c.370C>A	c.(370-372)CCT>ACT	p.P124T	ZDHHC9_uc004euw.2_Missense_Mutation_p.P124T|ZDHHC9_uc004eux.1_Missense_Mutation_p.P124T|ZDHHC9_uc004euy.1_Missense_Mutation_p.P51T	NM_001008222	NP_001008223	Q9Y397	ZDHC9_HUMAN	zinc finger, DHHC domain containing 9	124	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)	1						TTGATACGAGGCGGTGGTCGC	0.483			NA											71	71					2.28164e-27	4.40252e-27	0.00361	1	0
UTP14A	10813	broad.mit.edu	37	X	129055513	129055513	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:129055513G>T	uc004euz.2	+	11	1326	c.1298G>T	c.(1297-1299)AGA>ATA	p.R433I	UTP14A_uc011mup.1_Missense_Mutation_p.R381I|UTP14A_uc011muq.1_Missense_Mutation_p.R379I|UTP14A_uc004eva.1_Missense_Mutation_p.R139I	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	433					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						CTTAGAAAAAGATCTGAGCTC	0.463			NA											22	23					2.89027e-11	4.02321e-11	0.002299	1	0
AIFM1	9131	broad.mit.edu	37	X	129281788	129281788	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:129281788C>A	uc004evg.2	-	4	591	c.413G>T	c.(412-414)GGT>GTT	p.G138V	AIFM1_uc011mus.1_Missense_Mutation_p.G138V|AIFM1_uc004evh.2_Missense_Mutation_p.G134V|AIFM1_uc004evi.2_Intron|AIFM1_uc004evk.2_RNA	NM_004208	NP_004199	O95831	AIFM1_HUMAN	programmed cell death 8 isoform 1	138	FAD.|FAD-dependent oxidoreductase (By similarity).				activation of caspase activity|apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytosol|mitochondrial inner membrane|mitochondrial intermembrane space|nucleus|perinuclear region of cytoplasm	DNA binding|electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			ovary(4)|central_nervous_system(1)	5						TGTGCCTCCACCAATTAGCAG	0.517			NA											100	73					1.90545e-35	3.89851e-35	0.00361	1	0
SLC25A14	9016	broad.mit.edu	37	X	129506898	129506898	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:129506898G>T	uc004evn.1	+	11	1165	c.952G>T	c.(952-954)GAG>TAG	p.E318*	SLC25A14_uc004evo.1_Nonsense_Mutation_p.E139*|SLC25A14_uc004evp.1_Nonsense_Mutation_p.E318*|SLC25A14_uc004evq.1_Nonsense_Mutation_p.E315*|SLC25A14_uc004evr.1_Nonsense_Mutation_p.E346*	NM_003951	NP_003942	O95258	UCP5_HUMAN	solute carrier family 25, member 14 isoform	318	Solcar 3.				aerobic respiration|mitochondrial transport	integral to plasma membrane|mitochondrial inner membrane	binding			ovary(1)	1						TATTACATACGAGCAGCTAAA	0.393			NA											165	130					2.18507e-80	4.73598e-80	0.00361	1	0
MST4	51765	broad.mit.edu	37	X	131202555	131202555	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:131202555G>A	uc004ewk.1	+	6	856	c.555G>A	c.(553-555)TGG>TGA	p.W185*	MST4_uc004ewl.1_Nonsense_Mutation_p.W108*|MST4_uc011mux.1_Nonsense_Mutation_p.W207*|MST4_uc010nrj.1_Nonsense_Mutation_p.W185*|MST4_uc004ewm.1_Nonsense_Mutation_p.W185*	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	185	Protein kinase.				cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					CTCCATTTTGGATGGCTCCTG	0.368			NA											35	70					0	0	0.006999	0	0
FRMD7	90167	broad.mit.edu	37	X	131212529	131212529	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:131212529G>T	uc004ewn.2	-	12	1694	c.1516C>A	c.(1516-1518)CCC>ACC	p.P506T	FRMD7_uc011muy.1_Missense_Mutation_p.P491T	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	506					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GACCATCTGGGCACCTGGGGT	0.493			NA											66	169					9.61844e-40	1.9966e-39	0.00361	1	0
MBNL3	55796	broad.mit.edu	37	X	131526362	131526362	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:131526362C>A	uc004ewv.3	-	3	422	c.343G>T	c.(343-345)GGT>TGT	p.G115C	uc004ewr.1_Intron|MBNL3_uc004eww.2_Missense_Mutation_p.G19C|MBNL3_uc004ews.2_Missense_Mutation_p.G19C|MBNL3_uc004ewt.2_Missense_Mutation_p.G65C|MBNL3_uc011muz.1_Missense_Mutation_p.G19C|MBNL3_uc004ewu.3_Missense_Mutation_p.G115C|MBNL3_uc004ewx.1_Missense_Mutation_p.G65C	NM_018388	NP_060858	Q9NUK0	MBNL3_HUMAN	muscleblind-like 3 isoform G	115					mRNA processing|multicellular organismal development|regulation of RNA splicing|RNA splicing	Golgi apparatus|nucleus	nucleic acid binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					GGAAAAGAACCCTGTATGTTT	0.388			NA											16	21					2.23348e-06	2.62416e-06	0.004007	1	0
SAGE1	55511	broad.mit.edu	37	X	134993903	134993903	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:134993903G>T	uc004ezh.2	+	18	2479	c.2312G>T	c.(2311-2313)AGC>ATC	p.S771I	SAGE1_uc010nry.1_Missense_Mutation_p.S740I|SAGE1_uc011mvv.1_Missense_Mutation_p.S395I	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	771										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					ACAAGTCTCAGCAAAGATGAG	0.423			NA											63	160					1.12357e-39	2.32892e-39	0.00361	1	0
MAP7D3	79649	broad.mit.edu	37	X	135322608	135322608	+	Silent	SNP	C	C	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:135322608C>T	uc004ezt.2	-	6	664	c.573G>A	c.(571-573)CAG>CAA	p.Q191Q	MAP7D3_uc004ezs.2_Intron|MAP7D3_uc011mwc.1_Silent_p.Q173Q|MAP7D3_uc010nsa.1_Silent_p.Q190Q	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	191						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					CAGAAGTACCCTGTTCAAGTT	0.338			NA											43	34					0	0	0.003214	0	0
MAP7D3	79649	broad.mit.edu	37	X	135323319	135323319	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:135323319C>A	uc004ezt.2	-	5	626	c.535G>T	c.(535-537)GCC>TCC	p.A179S	MAP7D3_uc004ezs.2_Missense_Mutation_p.G178W|MAP7D3_uc011mwc.1_Missense_Mutation_p.A161S|MAP7D3_uc010nsa.1_Missense_Mutation_p.A178S	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	179						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					TATTAATTACCAGTTTTGCTC	0.358			NA											32	31					2.08457e-15	3.2371e-15	0.002096	1	0
GPR112	139378	broad.mit.edu	37	X	135431007	135431007	+	Silent	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:135431007T>A	uc004ezu.1	+	6	5433	c.5142T>A	c.(5140-5142)ACT>ACA	p.T1714T	GPR112_uc010nsb.1_Silent_p.T1509T|GPR112_uc010nsc.1_Silent_p.T1481T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1714	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGGCTACAACTTTGGGCATAT	0.433			NA											88	59					0	0	0.00361	0	0
BRS3	680	broad.mit.edu	37	X	135572419	135572419	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:135572419G>A	uc004ezv.1	+	2	711	c.562G>A	c.(562-564)GTA>ATA	p.V188I		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	188	Extracellular (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					ATTTTCAAATGTATACACTTT	0.408			NA											47	31					0	0	0.003214	0	0
FGF13	2258	broad.mit.edu	37	X	137715101	137715101	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:137715101G>T	uc004fam.2	-	5	1310	c.648C>A	c.(646-648)TCC>TCA	p.S216S	FGF13_uc004fan.2_Silent_p.S163S|FGF13_uc011mwi.1_Silent_p.S197S|FGF13_uc004faq.2_Silent_p.S226S|FGF13_uc004far.2_Silent_p.S197S|FGF13_uc011mwj.1_Silent_p.S226S|FGF13_uc011mwk.1_Silent_p.S170S	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	216					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TTCCAGATCGGGAGAACTCCG	0.517			NA											27	85					2.12542e-12	3.06025e-12	0.00632	1	0
FGF13	2258	broad.mit.edu	37	X	137939743	137939743	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:137939743C>G	uc004faq.2	-	2	324	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FGF13_uc011mwi.1_Missense_Mutation_p.A21P|FGF13_uc004far.2_Missense_Mutation_p.A21P|FGF13_uc011mwj.1_Missense_Mutation_p.A50P|FGF13_uc011mwk.1_Intron	NM_001139502	NP_001132974	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 3	Error:Variant_position_missing_in_Q92913_after_alignment					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGACACTTAGCACGAAAGGGG	0.488			NA											55	115					0	0	0.00361	0	0
MCF2	4168	broad.mit.edu	37	X	138679702	138679702	+	Silent	SNP	A	A	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:138679702A>G	uc004fau.2	-	18	2266	c.1972T>C	c.(1972-1974)TTG>CTG	p.L658L	MCF2_uc004fav.2_Silent_p.L674L|MCF2_uc011mwl.1_Silent_p.L635L|MCF2_uc010nsh.1_Silent_p.L658L|MCF2_uc011mwm.1_Silent_p.L619L|MCF2_uc011mwn.1_Silent_p.L803L|MCF2_uc004faw.2_Silent_p.L718L|MCF2_uc011mwo.1_Silent_p.L734L	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	658	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					GCCTTCTTCAACAGAGCAGAT	0.323			NA											44	30					0	0	0.00361	0	0
MCF2	4168	broad.mit.edu	37	X	138708385	138708385	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:138708385C>A	uc004fau.2	-	6	948	c.654G>T	c.(652-654)CTG>CTT	p.L218L	MCF2_uc004fav.2_Silent_p.L218L|MCF2_uc011mwl.1_Silent_p.L179L|MCF2_uc010nsh.1_Silent_p.L218L|MCF2_uc011mwm.1_Silent_p.L179L|MCF2_uc011mwn.1_Silent_p.L363L|MCF2_uc004faw.2_Silent_p.L278L|MCF2_uc011mwo.1_Silent_p.L278L	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	218					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TCCATAGTTGCAGATACTGCT	0.338			NA											49	35					3.21987e-24	5.98577e-24	0.00361	1	0
CXorf66	347487	broad.mit.edu	37	X	139038471	139038471	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:139038471C>G	uc004fbb.2	-	3	692	c.670G>C	c.(670-672)GAA>CAA	p.E224Q		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	224	Cytoplasmic (Potential).					integral to membrane					0						GGTGAGATTTCATTTTGTGGA	0.443			NA											94	62					0	0	0.00361	0	0
LDOC1	23641	broad.mit.edu	37	X	140271183	140271183	+	Silent	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:140271183C>A	uc004fbj.2	-	1	128	c.24G>T	c.(22-24)CTG>CTT	p.L8L		NM_012317	NP_036449	O95751	LDOC1_HUMAN	leucine zipper, down-regulated in cancer 1	8					negative regulation of cell proliferation	nucleus	protein binding				0	Acute lymphoblastic leukemia(192;7.65e-05)					GCGCGTGCAGCAGCAGCACCA	0.667			NA											14	18					4.36969e-10	5.78294e-10	0.001855	1	0
SPANXN3	139067	broad.mit.edu	37	X	142605142	142605142	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:142605142C>A	uc004fbw.2	-	1	166	c.78G>T	c.(76-78)GAG>GAT	p.E26D		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	26										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					acaATCTTACCTCATCATTTT	0.229			NA											12	147					6.40141e-05	7.11046e-05	0.000978	1	0
SLITRK2	84631	broad.mit.edu	37	X	144904214	144904214	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:144904214C>A	uc004fcd.2	+	5	1261	c.271C>A	c.(271-273)CTT>ATT	p.L91I	SLITRK2_uc010nsp.2_Missense_Mutation_p.L91I|SLITRK2_uc010nso.2_Missense_Mutation_p.L91I|SLITRK2_uc011mwq.1_Missense_Mutation_p.L91I|SLITRK2_uc011mwr.1_Missense_Mutation_p.L91I|SLITRK2_uc011mws.1_Missense_Mutation_p.L91I|SLITRK2_uc004fcg.2_Missense_Mutation_p.L91I|SLITRK2_uc011mwt.1_Missense_Mutation_p.L91I	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	91	Extracellular (Potential).|LRR 2.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					CGCGGTGACTCTTCACCTAGG	0.463			NA											30	59					1.30897e-18	2.21638e-18	0.009535	1	0
FMR1	2332	broad.mit.edu	37	X	147011491	147011491	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:147011491G>T	uc010nst.2	+	6	633	c.444G>T	c.(442-444)AAG>AAT	p.K148N	FMR1_uc011mwz.1_Missense_Mutation_p.K148N|FMR1_uc004fcj.2_Missense_Mutation_p.K148N|FMR1_uc004fck.3_Missense_Mutation_p.K148N|FMR1_uc004fcl.3_Missense_Mutation_p.K9N|FMR1_uc011mxa.1_5'Flank	NM_002024	NP_002015	Q06787	FMR1_HUMAN	fragile X mental retardation 1	148					mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGGCACATAAGGATTTTAAAA	0.313			NA							Fragile_X_syndrome				33	20					1.22384e-17	2.0288e-17	0.002836	1	0
FMR1	2332	broad.mit.edu	37	X	147026523	147026524	+	Missense_Mutation	DNP	GG	GG	AT			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:147026523_147026524GG>AT	uc010nst.2	+	15	1795_1796	c.1606_1607GG>AT	c.(1606-1608)GGG>ATG	p.G536M	FMR1_uc004fcj.2_Missense_Mutation_p.G513M|FMR1_uc004fck.3_Missense_Mutation_p.G490M|FMR1_uc004fcl.3_Missense_Mutation_p.G376M|FMR1_uc011mxa.1_Missense_Mutation_p.G183M	NM_002024	NP_002015	Q06787	FMR1_HUMAN	fragile X mental retardation 1	536	Interaction with RANBP9.|RNA-binding RGG-box.				mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCGGCGTggagggggaggaaga	0.371			NA							Fragile_X_syndrome				24	8					0	0	0.004672	0	0
AFF2	2334	broad.mit.edu	37	X	147743550	147743550	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:147743550C>A	uc004fcp.2	+	3	781	c.302C>A	c.(301-303)TCT>TAT	p.S101Y	AFF2_uc004fco.2_Missense_Mutation_p.S97Y|AFF2_uc004fcq.2_Missense_Mutation_p.S97Y|AFF2_uc004fcr.2_Missense_Mutation_p.S97Y|AFF2_uc011mxb.1_Missense_Mutation_p.S101Y|AFF2_uc004fcs.2_Missense_Mutation_p.S97Y	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	101					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAAGAATTCTGTGCCCCAG	0.403			NA											270	110					2.256e-115	4.91967e-115	0.00361	1	0
AFF2	2334	broad.mit.edu	37	X	148037572	148037572	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:148037572C>A	uc004fcp.2	+	11	2476	c.1997C>A	c.(1996-1998)CCA>CAA	p.P666Q	AFF2_uc004fcq.2_Missense_Mutation_p.P656Q|AFF2_uc004fcr.2_Missense_Mutation_p.P627Q|AFF2_uc011mxb.1_Missense_Mutation_p.P631Q|AFF2_uc004fcs.2_Missense_Mutation_p.P633Q|AFF2_uc011mxc.1_Missense_Mutation_p.P307Q	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	666					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CTTCATGACCCACCAAGAGGC	0.498			NA											139	63					1.95558e-62	4.18759e-62	0.00361	1	0
AFF2	2334	broad.mit.edu	37	X	148038108	148038108	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:148038108G>C	uc004fcp.2	+	11	3012	c.2533G>C	c.(2533-2535)GAG>CAG	p.E845Q	AFF2_uc004fcq.2_Missense_Mutation_p.E835Q|AFF2_uc004fcr.2_Missense_Mutation_p.E806Q|AFF2_uc011mxb.1_Missense_Mutation_p.E810Q|AFF2_uc004fcs.2_Missense_Mutation_p.E812Q|AFF2_uc011mxc.1_Missense_Mutation_p.E486Q	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	845					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CACAGCTGTGGAGAAACCAGC	0.527			NA											70	45					0	0	0.00361	0	0
TMEM185A	84548	broad.mit.edu	37	X	148690348	148690348	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:148690348C>G	uc011mxq.1	-	4	700	c.389G>C	c.(388-390)TGC>TCC	p.C130S	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|TMEM185A_uc011mxp.1_Missense_Mutation_p.C71S|TMEM185A_uc004fdo.2_Intron|TMEM185A_uc004fdp.3_Missense_Mutation_p.C47S	NM_032508	NP_115897	Q8NFB2	T185A_HUMAN	transmembrane protein 185A	130	Helical; (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GCCCCAAACGCAAGCTGCAAC	0.378			NA											63	219					0	0	0.00361	0	0
GPR50	9248	broad.mit.edu	37	X	150345294	150345294	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:150345294C>A	uc010ntg.1	+	1	236	c.101C>A	c.(100-102)GCG>GAG	p.A34E	uc004fes.1_RNA|GPR50_uc011myc.1_Missense_Mutation_p.A34E	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	34	Helical; Name=1; (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					ATGTTCTGCGCGATGGTTATC	0.522			NA											137	71					2.67552e-55	5.69497e-55	0.00361	1	0
GPR50	9248	broad.mit.edu	37	X	150349445	150349445	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:150349445T>A	uc010ntg.1	+	2	1525	c.1390T>A	c.(1390-1392)TCT>ACT	p.S464T		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	464	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CAAGCCTGACTCTGTTCATTT	0.547			NA											495	198					0	0	0.00361	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092786	151092786	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:151092786C>A	uc004fez.2	+	3	806	c.650C>A	c.(649-651)GCC>GAC	p.A217D	MAGEA4_uc004ffa.2_Missense_Mutation_p.A217D|MAGEA4_uc004ffb.2_Missense_Mutation_p.A217D|MAGEA4_uc004ffc.2_Missense_Mutation_p.A217D|MAGEA4_uc004ffd.2_Missense_Mutation_p.A217D	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	217	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGCGACAGCGCCTCTGAGGAG	0.547			NA											150	80					1.30846e-95	2.849e-95	0.00361	1	0
HAUS7	55559	broad.mit.edu	37	X	152721042	152721042	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:152721042G>T	uc004fho.1	-	8	1476	c.918C>A	c.(916-918)CCC>CCA	p.P306P	HAUS7_uc004fhl.2_RNA|HAUS7_uc004fhm.2_RNA|HAUS7_uc004fhn.1_Silent_p.P306P|HAUS7_uc004fhp.1_RNA	NM_017518	NP_059988	Q99871	HAUS7_HUMAN	HAUS augmin-like complex subunit 7	306					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleolus|plasma membrane|spindle	thioesterase binding				0						CCTGGATGATGGGGCCGCACG	0.622			NA											42	29					7.66079e-34	1.55398e-33	0.002522	1	0
ATP2B3	492	broad.mit.edu	37	X	152815537	152815537	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:152815537T>C	uc004fht.1	+	10	1742	c.1616T>C	c.(1615-1617)GTG>GCG	p.V539A	ATP2B3_uc004fhs.1_Missense_Mutation_p.V539A	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	539	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCACGCCAGGTGGGCAATAAG	0.637			NA											44	17					0	0	0.00874	0	0
SLC6A8	6535	broad.mit.edu	37	X	152959710	152959710	+	Silent	SNP	C	C	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:152959710C>G	uc004fib.3	+	9	1658	c.1380C>G	c.(1378-1380)TCC>TCG	p.S460S	SLC6A8_uc004fic.3_Silent_p.S450S|SLC6A8_uc011myx.1_Silent_p.S345S|SLC6A8_uc010nuj.2_RNA	NM_005629	NP_005620	P48029	SC6A8_HUMAN	solute carrier family 6 member 8 isoform 1	460	Helical; (Potential).				creatine metabolic process|muscle contraction	integral to plasma membrane	creatine:sodium symporter activity|neurotransmitter:sodium symporter activity			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Creatine(DB00148)	TCGATCTCTCCATGGTGACTG	0.622			NA											139	73					0	0	0.00361	0	0
ABCD1	215	broad.mit.edu	37	X	153001804	153001804	+	Silent	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:153001804G>T	uc004fif.2	+	4	1629	c.1230G>T	c.(1228-1230)ACG>ACT	p.T410T	ABCD1_uc004fig.2_5'Flank	NM_000033	NP_000024	P33897	ABCD1_HUMAN	ATP-binding cassette, sub-family D (ALD), member	410					fatty acid beta-oxidation using acyl-CoA oxidase|peroxisomal membrane transport|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|identical protein binding|peroxisomal fatty-acyl-CoA transporter activity				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTCAGGTGACGGAGCTGGCTG	0.622			NA											20	67					2.54575e-18	4.28504e-18	0.010504	1	0
ARHGAP4	393	broad.mit.edu	37	X	153176039	153176039	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:153176039C>A	uc004fjk.1	-	16	1885	c.1843G>T	c.(1843-1845)GAG>TAG	p.E615*	ARHGAP4_uc004fjj.1_5'UTR|ARHGAP4_uc011mzf.1_Nonsense_Mutation_p.E592*|ARHGAP4_uc004fjl.1_Nonsense_Mutation_p.E655*|ARHGAP4_uc010nup.1_Intron	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	615	Rho-GAP.				apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTCACGTGCTCCACCCTCTCC	0.697			NA											13	26					4.7546e-09	6.0996e-09	0.004007	1	0
FLNA	2316	broad.mit.edu	37	X	153587460	153587460	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:153587460G>T	uc004fkk.2	-	26	4615	c.4366C>A	c.(4366-4368)CCC>ACC	p.P1456T	FLNA_uc011mzn.1_5'Flank|FLNA_uc010nuu.1_Missense_Mutation_p.P1456T	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1456	Filamin 13.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTCAGGCCGGGCCCAGAGCAC	0.597			NA											181	116					3.54974e-74	7.68212e-74	0.00361	1	0
FLNA	2316	broad.mit.edu	37	X	153590134	153590134	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:153590134T>G	uc004fkk.2	-	20	3097	c.2848A>C	c.(2848-2850)ACT>CCT	p.T950P	FLNA_uc010nuu.1_Missense_Mutation_p.T950P	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	950	Filamin 7.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCTCCATAAGTGACATTGACG	0.557			NA											52	53					0	0	0.00361	0	0
EMD	2010	broad.mit.edu	37	X	153608666	153608666	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:153608666C>A	uc004fkl.2	+	4	586	c.338C>A	c.(337-339)CCG>CAG	p.P113Q		NM_000117	NP_000108	P50402	EMD_HUMAN	emerin	113	Interaction with F-actin (Probable).				cellular response to growth factor stimulus|muscle contraction|muscle organ development|negative regulation of catenin import into nucleus|negative regulation of fibroblast proliferation|positive regulation of protein export from nucleus|regulation of canonical Wnt receptor signaling pathway	endoplasmic reticulum|integral to membrane|microtubule|nuclear inner membrane|nuclear outer membrane	actin binding|beta-tubulin binding				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCTGCCGGCCCGTCCAGGGCT	0.592			NA											84	37					1.67174e-50	3.53724e-50	0.00361	1	0
F8	2157	broad.mit.edu	37	X	154158167	154158167	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:154158167C>A	uc004fmt.2	-	14	4069	c.3898G>T	c.(3898-3900)GGA>TGA	p.G1300*		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1300	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GTTTGATTTCCCAAGCCTTCC	0.373			NA											45	138					9.9191e-30	1.95364e-29	0.00874	1	0
SPRY3	10251	broad.mit.edu	37	X	155004198	155004198	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:155004198G>T	uc004fnq.1	+	2	1119	c.665G>T	c.(664-666)TGG>TTG	p.W222L	SPRY3_uc010nvl.1_Missense_Mutation_p.W123L	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	222	SPR.|Cys-rich.				multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TTTGTCCGCTGGGCAGCCATG	0.567			NA											42	185					1.48646e-12	2.15333e-12	0.002522	1	0
TGFBR3	7049	broad.mit.edu	37	1	92181945	92181945	+	Frame_Shift_Del	DEL	A	A	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:92181945delA	uc001doh.2	-	12	2180	c.1714delT	c.(1714-1716)TGCfs	p.C572fs	TGFBR3_uc009wde.2_Frame_Shift_Del_p.C349fs|TGFBR3_uc010osy.1_Frame_Shift_Del_p.C530fs|TGFBR3_uc001doi.2_Frame_Shift_Del_p.C571fs|TGFBR3_uc001doj.2_Frame_Shift_Del_p.C571fs	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	572	ZP.|Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		TGAAGGCTGCAATTAAACTGG	0.448			NA											28	4	---	---	---	---	NA	NA	NA	NA	NA
RBM15	64783	broad.mit.edu	37	1	110884751	110884751	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:110884751delG	uc001dzl.1	+	1	2807	c.2724delG	c.(2722-2724)GTGfs	p.V908fs	RBM15_uc001dzm.1_Frame_Shift_Del_p.V908fs|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	908	SPOC.				interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		GCCTCCCTGTGGGGGGCAACA	0.557			NA	T	MKL1	acute megakaryocytic leukemia								41	10	---	---	---	---	NA	NA	NA	NA	NA
ADAM30	11085	broad.mit.edu	37	1	120436750	120436750	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:120436750delG	uc001eij.2	-	1	2364	c.2210delC	c.(2209-2211)ACAfs	p.T737fs		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	737	5 X 9 AA approximate repeats.|Cytoplasmic (Potential).|1.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TACAGTTTTTGTTTTAGATTC	0.363			NA											85	30	---	---	---	---	NA	NA	NA	NA	NA
NMNAT2	23057	broad.mit.edu	37	1	183255865	183255865	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:183255865delC	uc001gqc.1	-	5	715	c.380delG	c.(379-381)GGAfs	p.G127fs	NMNAT2_uc001gqb.1_Frame_Shift_Del_p.G122fs|NMNAT2_uc001gqd.2_Frame_Shift_Del_p.G22fs	NM_015039	NP_055854	Q9BZQ4	NMNA2_HUMAN	nicotinamide mononucleotide adenylyltransferase	127					water-soluble vitamin metabolic process	Golgi membrane|nucleus	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity			skin(1)	1						TTGTGGCTGTCCGATCACAGG	0.488			NA											35	49	---	---	---	---	NA	NA	NA	NA	NA
OR2T34	127068	broad.mit.edu	37	1	248737718	248737718	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr1:248737718delC	uc001iep.1	-	1	341	c.341delG	c.(340-342)GGAfs	p.G114fs		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AACCTCAGCTCCAGCCAGGGT	0.562			NA											27	65	---	---	---	---	NA	NA	NA	NA	NA
HNRNPA3P1	10151	broad.mit.edu	37	10	44285625	44285625	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:44285625delG	uc010qfe.1	-	1	241	c.211delC	c.(211-213)CAAfs	p.Q71fs		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						CGTTTTGTTTGGGGGTCTCTC	0.443			NA											20	22	---	---	---	---	NA	NA	NA	NA	NA
ZNF488	118738	broad.mit.edu	37	10	48371143	48371143	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:48371143delG	uc001jex.2	+	2	773	c.611delG	c.(610-612)TGGfs	p.W204fs	ZNF488_uc001jey.2_Frame_Shift_Del_p.W97fs	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTCGCTTGTTGGGGTCGACTT	0.542			NA											11	38	---	---	---	---	NA	NA	NA	NA	NA
SORCS3	22986	broad.mit.edu	37	10	106802834	106802834	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr10:106802834delG	uc001kyi.1	+	5	1203	c.976delG	c.(976-978)GGAfs	p.G326fs		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	326	BNR 3.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CATGGACTTTGGAAGACGGTG	0.433	NSCLC(116;1497 1690 7108 13108 14106)		NA											31	41	---	---	---	---	NA	NA	NA	NA	NA
STIM1	6786	broad.mit.edu	37	11	4045158	4045159	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:4045158_4045159insT	uc001lyv.2	+	3	894_895	c.326_327insT	c.(325-327)CATfs	p.H109fs	STIM1_uc009yef.2_Frame_Shift_Ins_p.H109fs	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	109	Extracellular (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		AGCACCTTCCATGGTGAGGATA	0.485			NA											14	27	---	---	---	---	NA	NA	NA	NA	NA
AHNAK	79026	broad.mit.edu	37	11	62297223	62297224	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:62297223_62297224insA	uc001ntl.2	-	5	4965_4966	c.4665_4666insT	c.(4663-4668)CTTGAAfs	p.L1555fs	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1555_1556					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCTGGAGCTTCAAGATTCACAT	0.46			NA											56	141	---	---	---	---	NA	NA	NA	NA	NA
FAM55A	120400	broad.mit.edu	37	11	114401102	114401103	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr11:114401102_114401103insA	uc001ppa.2	-	3	618_619	c.201_202insT	c.(199-204)TTTGTTfs	p.F67fs	FAM55A_uc010rxd.1_5'UTR|FAM55A_uc001ppb.1_Frame_Shift_Ins_p.F209fs	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	209_210						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		GTGCCATTAACAAATTTGCCTT	0.47			NA											13	45	---	---	---	---	NA	NA	NA	NA	NA
SOX5	6660	broad.mit.edu	37	12	23728652	23728652	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:23728652delG	uc001rfw.2	-	10	1387	c.1285delC	c.(1285-1287)CTCfs	p.L429fs	SOX5_uc001rfx.2_Frame_Shift_Del_p.L416fs|SOX5_uc001rfy.2_Intron|SOX5_uc001rfv.2_Frame_Shift_Del_p.L43fs|SOX5_uc010siv.1_Frame_Shift_Del_p.L416fs|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Frame_Shift_Del_p.L381fs	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	429					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						GAGGCTTTGAGGGGGCCTGCC	0.488			NA											31	15	---	---	---	---	NA	NA	NA	NA	NA
ZNF10	7556	broad.mit.edu	37	12	133727739	133727739	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr12:133727739delG	uc009zzb.2	+	3	606	c.159delG	c.(157-159)TTGfs	p.L53fs	ZNF268_uc010tbv.1_5'UTR|ZNF10_uc001ulq.2_Frame_Shift_Del_p.L53fs	NM_015394	NP_056209	P21506	ZNF10_HUMAN	zinc finger protein 10	53	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;1.28e-06)|all_epithelial(31;0.0051)|Lung NSC(355;0.00948)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		TGGTTTCCTTGGGTAAGACTA	0.463			NA											11	38	---	---	---	---	NA	NA	NA	NA	NA
DHRS12	79758	broad.mit.edu	37	13	52364174	52364174	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr13:52364174delC	uc001vfq.2	-	5	469	c.421delG	c.(421-423)GAAfs	p.E141fs	DHRS12_uc001vfr.1_Frame_Shift_Del_p.E92fs|DHRS12_uc001vfs.1_Frame_Shift_Del_p.E92fs			A0PJE2	DHR12_HUMAN	RecName: Full=Dehydrogenase/reductase SDR family member 12;          EC=1.1.-.-;	141							binding|oxidoreductase activity				0		Breast(56;0.00173)|Prostate(109;0.00899)|Lung NSC(96;0.0199)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.81e-08)		AAGTTTTTTTCAAGTCCATCT	0.303			NA											11	29	---	---	---	---	NA	NA	NA	NA	NA
SERPINA6	866	broad.mit.edu	37	14	94770871	94770871	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr14:94770871delG	uc001ycv.2	-	5	1206	c.1102delC	c.(1102-1104)CTAfs	p.L368fs	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	368					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	GTCAGGTTTAGGGTGACCCCA	0.522			NA											35	4	---	---	---	---	NA	NA	NA	NA	NA
HERC2	8924	broad.mit.edu	37	15	28377876	28377876	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:28377876delC	uc001zbj.2	-	80	12437	c.12331delG	c.(12331-12333)GACfs	p.D4111fs		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4111	RCC1 16.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GTGTAGAGGTCCCCGGCTGCT	0.642			NA											35	50	---	---	---	---	NA	NA	NA	NA	NA
MGA	23269	broad.mit.edu	37	15	42021366	42021366	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:42021366delG	uc010ucy.1	+	11	3843	c.3662delG	c.(3661-3663)CGGfs	p.R1221fs	MGA_uc010ucz.1_Frame_Shift_Del_p.R1221fs	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1221						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TTACAGATTCGGGAAGAGGAC	0.363			NA											9	10	---	---	---	---	NA	NA	NA	NA	NA
MORF4L1	10933	broad.mit.edu	37	15	79189377	79189378	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr15:79189377_79189378insT	uc002bel.2	+	13	1245_1246	c.1057_1058insT	c.(1057-1059)GCTfs	p.A353fs	MORF4L1_uc002bem.2_Frame_Shift_Ins_p.A314fs|MORF4L1_uc010une.1_Frame_Shift_Ins_p.A226fs	NM_206839	NP_996670	Q9UBU8	MO4L1_HUMAN	MORF-related gene 15 isoform 2	353					double-strand break repair via homologous recombination|histone deacetylation|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Sin3 complex	protein N-terminus binding				0						TTATGAAGTGGCTCCTCCTGAG	0.376			NA											13	29	---	---	---	---	NA	NA	NA	NA	NA
ZFHX3	463	broad.mit.edu	37	16	72829861	72829862	+	Frame_Shift_Ins	INS	-	-	C			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr16:72829861_72829862insC	uc002fck.2	-	9	7392_7393	c.6719_6720insG	c.(6718-6720)GGAfs	p.G2240fs	ZFHX3_uc002fcl.2_Frame_Shift_Ins_p.G1326fs	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2240					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				ACCTCTTGCTTCCCCAGTACTC	0.515			NA											45	61	---	---	---	---	NA	NA	NA	NA	NA
DNAH9	1770	broad.mit.edu	37	17	11645507	11645507	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:11645507delG	uc002gne.2	+	30	6056	c.5988delG	c.(5986-5988)GTGfs	p.V1996fs	DNAH9_uc010coo.2_Frame_Shift_Del_p.V1290fs	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1996	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GTGCAATGGTGGTTCCAGACT	0.453			NA											61	15	---	---	---	---	NA	NA	NA	NA	NA
LRRC37B	114659	broad.mit.edu	37	17	30380301	30380301	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:30380301delG	uc002hgu.2	+	12	2809	c.2798delG	c.(2797-2799)AGGfs	p.R933fs	LRRC37B_uc010wbx.1_Frame_Shift_Del_p.R851fs|LRRC37B_uc010csu.2_Frame_Shift_Del_p.R882fs	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	933	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				TCACATAAAAGGGCATCAGAA	0.338			NA											15	41	---	---	---	---	NA	NA	NA	NA	NA
USH1G	124590	broad.mit.edu	37	17	72916480	72916480	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr17:72916480delC	uc002jme.1	-	2	634	c.451delG	c.(451-453)GCCfs	p.A151fs	USH1G_uc010wro.1_Frame_Shift_Del_p.A48fs	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	151					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					TGCAGCTTGGCGCACTCGCGG	0.677			NA											14	65	---	---	---	---	NA	NA	NA	NA	NA
TMEM149	79713	broad.mit.edu	37	19	36230358	36230358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:36230358delG	uc002obc.2	-	5	992	c.891delC	c.(889-891)ACCfs	p.T297fs	TMEM149_uc002obb.2_Frame_Shift_Del_p.T109fs|TMEM149_uc002obd.3_Frame_Shift_Del_p.T297fs|TMEM149_uc010xsy.1_RNA|TMEM149_uc010eej.2_Frame_Shift_Del_p.T377fs	NM_024660	NP_078936	Q9H665	IGFR1_HUMAN	transmembrane protein 149 precursor	297	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AATAGGCAAAGGTGGACCAGG	0.647			NA											26	26	---	---	---	---	NA	NA	NA	NA	NA
SCAF1	58506	broad.mit.edu	37	19	50158112	50158113	+	Frame_Shift_Ins	INS	-	-	G			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:50158112_50158113insG	uc002poq.2	+	9	3727_3728	c.3603_3604insG	c.(3601-3606)CGTGGGfs	p.R1201fs		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	1201_1202	Necessary for interaction with the CTD domain of POLR2A.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		CTGAGGGCCGTGGGGACACAGA	0.663			NA											8	19	---	---	---	---	NA	NA	NA	NA	NA
SIGLEC8	27181	broad.mit.edu	37	19	51961617	51961619	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GCA	GCA	-	-	GCA	GCA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:51961617_51961619delGCA	uc002pwt.2	-	1	90_92	c.23_25delTGC	c.(22-27)CTGCCC>CCC	p.L8del	SIGLEC8_uc010yda.1_In_Frame_Del_p.L8del|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_In_Frame_Del_p.L8del	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	8					cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CAGagcaggggcagcagcagcag	0.493			NA											7	103	---	---	---	---	NA	NA	NA	NA	NA
PRKCG	5582	broad.mit.edu	37	19	54401359	54401360	+	Frame_Shift_Ins	INS	-	-	G	rs142359778		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:54401359_54401360insG	uc002qcq.1	+	10	1368_1369	c.1086_1087insG	c.(1084-1089)TTTGGGfs	p.F362fs	PRKCG_uc010yef.1_3'UTR|PRKCG_uc010yeg.1_Frame_Shift_Ins_p.F362fs|PRKCG_uc010yeh.1_Frame_Shift_Ins_p.F249fs	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	362_363	ATP (By similarity).|Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		AAGGCAGTTTTGGGAAGGTTGG	0.564			NA											14	19	---	---	---	---	NA	NA	NA	NA	NA
TNNI3	7137	broad.mit.edu	37	19	55665575	55665576	+	Splice_Site	INS	-	-	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr19:55665575_55665576insA	uc002qjg.3	-	7	373	c.373_splice	c.e7-1	p.I125_splice	TNNI3_uc010yft.1_Splice_Site_p.I117_splice	NM_000363	NP_000354	P19429	TNNI3_HUMAN	troponin I, cardiac						cardiac muscle contraction|cellular calcium ion homeostasis|muscle filament sliding|negative regulation of ATPase activity|regulation of systemic arterial blood pressure by ischemic conditions|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|calcium channel inhibitor activity|calcium-dependent protein binding|protein domain specific binding|protein kinase binding|troponin C binding|troponin T binding			lung(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		GATCTGCAATCTGGGGGCAAAC	0.53			NA											26	29	---	---	---	---	NA	NA	NA	NA	NA
SSTR4	6754	broad.mit.edu	37	20	23016582	23016582	+	Frame_Shift_Del	DEL	G	G	-	rs35140595		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:23016582delG	uc002wsr.2	+	1	526	c.462delG	c.(460-462)GCGfs	p.A154fs		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	154	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CTCTGCGCGCGGCGACCTACC	0.657	Esophageal Squamous(15;850 1104 16640)		NA											20	27	---	---	---	---	NA	NA	NA	NA	NA
PABPC1L	80336	broad.mit.edu	37	20	43561038	43561038	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:43561038delC	uc010ggv.1	+	9	1377	c.1295delC	c.(1294-1296)GCCfs	p.A432fs	PABPC1L_uc010zwq.1_Intron|PABPC1L_uc002xmv.2_Intron|PABPC1L_uc002xmw.2_5'UTR|PABPC1L_uc002xmx.2_5'UTR	NM_001124756	NP_001118228	Q4VXU2	PAP1L_HUMAN	poly(A)-binding protein, cytoplasmic 1-like	432	Pro-rich.						nucleotide binding|RNA binding			ovary(1)	1						ACCCAGCCTGCCCCCAGGTGG	0.632			NA											15	38	---	---	---	---	NA	NA	NA	NA	NA
PI3	5266	broad.mit.edu	37	20	43804522	43804522	+	Frame_Shift_Del	DEL	A	A	-	rs2664581	byFrequency	TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:43804522delA	uc002xng.2	+	2	124	c.100delA	c.(100-102)ACTfs	p.T34fs		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	34	SVP-1 clotting 1.|2 X tandem repeats of SVP-1 like motif.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				AGGTCAAGACACTGTCAAAGG	0.453			NA											30	71	---	---	---	---	NA	NA	NA	NA	NA
WFDC8	90199	broad.mit.edu	37	20	44187578	44187578	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:44187578delC	uc002xow.2	-	3	269	c.190delG	c.(190-192)GACfs	p.D64fs	WFDC8_uc002xox.2_Frame_Shift_Del_p.D64fs	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	64	WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TTACATGAGTCCGGAAGTTCA	0.448			NA											48	75	---	---	---	---	NA	NA	NA	NA	NA
UBE2C	11065	broad.mit.edu	37	20	44441431	44441431	+	Frame_Shift_Del	DEL	A	A	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr20:44441431delA	uc002xpm.2	+	1	177	c.97delA	c.(97-99)AAAfs	p.K33fs	UBE2C_uc002xpl.2_Frame_Shift_Del_p.K33fs|UBE2C_uc002xpn.2_5'UTR|UBE2C_uc002xpo.2_Frame_Shift_Del_p.K33fs|UBE2C_uc002xpp.2_Frame_Shift_Del_p.K33fs|UBE2C_uc002xpq.2_5'Flank	NM_007019	NP_008950	O00762	UBE2C_HUMAN	ubiquitin-conjugating enzyme E2C isoform 1	33					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|exit from mitosis|free ubiquitin chain polymerization|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|positive regulation of exit from mitosis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|protein K48-linked ubiquitination|spindle organization	anaphase-promoting complex|cytosol|nucleoplasm	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Myeloproliferative disorder(115;0.0122)				TCCGGTGGGCAAAAGGTGAGT	0.692			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
TTLL12	23170	broad.mit.edu	37	22	43570312	43570312	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:43570312delC	uc003bdq.2	-	8	1164	c.1132delG	c.(1132-1134)GCAfs	p.A378fs	TTLL12_uc003bdr.1_Frame_Shift_Del_p.A378fs	NM_015140	NP_055955	Q14166	TTL12_HUMAN	tubulin tyrosine ligase-like family, member 12	378	TTL.				protein modification process		tubulin-tyrosine ligase activity			central_nervous_system(1)	1		Ovarian(80;0.221)|Glioma(61;0.222)				GGGCCACCTGCCCGGCGCGCG	0.652			NA											22	47	---	---	---	---	NA	NA	NA	NA	NA
MAPK8IP2	23542	broad.mit.edu	37	22	51041769	51041771	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	GAG	GAG	-	-	GAG	GAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr22:51041769_51041771delGAG	uc003bmx.2	+	3	406_408	c.289_291delGAG	c.(289-291)GAGdel	p.E103del	MAPK8IP2_uc003bmy.2_In_Frame_Del_p.E76del|MAPK8IP2_uc011asc.1_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	103	Asp/Glu-rich (acidic).				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ggacgaggaagaggaggaggagg	0.483			NA											3	4	---	---	---	---	NA	NA	NA	NA	NA
CNTN4	152330	broad.mit.edu	37	3	2967431	2967431	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:2967431delG	uc003bpc.2	+	12	1547	c.1326delG	c.(1324-1326)AAGfs	p.K442fs	CNTN4_uc003bpb.1_Frame_Shift_Del_p.K114fs|CNTN4_uc003bpd.1_Frame_Shift_Del_p.K442fs|CNTN4_uc003bpe.2_Frame_Shift_Del_p.K114fs|CNTN4_uc003bpf.2_Frame_Shift_Del_p.K114fs	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	442	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ACACCTGGAAGAAAGGAAGGG	0.338			NA											46	9	---	---	---	---	NA	NA	NA	NA	NA
SLC6A1	6529	broad.mit.edu	37	3	11059079	11059079	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:11059079delC	uc010hdq.2	+	3	593	c.182delC	c.(181-183)GCCfs	p.A61fs		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	61	Helical; Name=1; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GTGGGCTATGCCATCGGCCTG	0.632			NA											35	6	---	---	---	---	NA	NA	NA	NA	NA
IMPG2	50939	broad.mit.edu	37	3	100988399	100988400	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr3:100988399_100988400insA	uc003duq.1	-	8	1049_1050	c.846_847insT	c.(844-849)ACTGGGfs	p.T282fs	IMPG2_uc011bhe.1_Frame_Shift_Ins_p.T145fs	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	282_283	Extracellular (Potential).|SEA 1.				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CCTGGTAACCCAGTAAATGCAT	0.262			NA											15	43	---	---	---	---	NA	NA	NA	NA	NA
NEIL3	55247	broad.mit.edu	37	4	178262723	178262723	+	Frame_Shift_Del	DEL	T	T	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr4:178262723delT	uc003iut.2	+	6	913	c.796delT	c.(796-798)TTTfs	p.F266fs	NEIL3_uc010irs.2_Intron	NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	266	FPG-type.				base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		TGTGTGCCGCTTTGGGGACAA	0.393			NA						BER_DNA_glycosylases					29	9	---	---	---	---	NA	NA	NA	NA	NA
PCDHA2	56146	broad.mit.edu	37	5	140175318	140175319	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:140175318_140175319insT	uc003lhd.2	+	1	875_876	c.769_770insT	c.(769-771)AATfs	p.N257fs	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Frame_Shift_Ins_p.N257fs|PCDHA2_uc011czy.1_Frame_Shift_Ins_p.N257fs	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	257	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAATACGGCAAATGGGACCTTA	0.396			NA											31	11	---	---	---	---	NA	NA	NA	NA	NA
DRD1	1812	broad.mit.edu	37	5	174869713	174869713	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr5:174869713delC	uc003mcz.2	-	2	1335	c.390delG	c.(388-390)CGGfs	p.R130fs		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	130	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	TTCTCTCATACCGGAAAGGGC	0.537			NA											22	12	---	---	---	---	NA	NA	NA	NA	NA
ZNF318	24149	broad.mit.edu	37	6	43306801	43306801	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:43306801delG	uc003oux.2	-	10	5013	c.4935delC	c.(4933-4935)CCCfs	p.P1645fs	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1645					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TTTTTGCAATGGGCTTTTCAG	0.488			NA											66	29	---	---	---	---	NA	NA	NA	NA	NA
GPR110	266977	broad.mit.edu	37	6	46979916	46979917	+	Frame_Shift_Ins	INS	-	-	A	rs149395001		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:46979916_46979917insA	uc003oyt.2	-	10	1141_1142	c.942_943insT	c.(940-945)ATTGTAfs	p.I314fs	GPR110_uc011dwl.1_Frame_Shift_Ins_p.I2fs	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	314_315	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GCATTGCCTACAATCATACTGA	0.411			NA											27	63	---	---	---	---	NA	NA	NA	NA	NA
GCLC	2729	broad.mit.edu	37	6	53373448	53373449	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:53373448_53373449insA	uc003pbw.1	-	8	1277_1278	c.889_890insT	c.(889-891)TGGfs	p.W297fs	GCLC_uc003pbv.1_Frame_Shift_Ins_p.W21fs	NM_001498	NP_001489	P48506	GSH1_HUMAN	glutamate-cysteine ligase, catalytic subunit	297					anti-apoptosis|cell redox homeostasis|cysteine metabolic process|glutamate metabolic process|glutathione biosynthetic process|negative regulation of transcription, DNA-dependent|regulation of blood vessel size|response to heat|response to hormone stimulus|response to oxidative stress|xenobiotic metabolic process	cytosol	ADP binding|ATP binding|coenzyme binding|glutamate binding|glutamate-cysteine ligase activity|magnesium ion binding			ovary(1)|central_nervous_system(1)	2	Lung NSC(77;0.0137)				L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	AATCACTCCCCAGCGACAATCA	0.446			NA											22	85	---	---	---	---	NA	NA	NA	NA	NA
PHF3	23469	broad.mit.edu	37	6	64422676	64422676	+	Frame_Shift_Del	DEL	C	C	-	rs149370303		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr6:64422676delC	uc003pep.1	+	15	5218	c.5192delC	c.(5191-5193)TCTfs	p.S1731fs	PHF3_uc003pen.2_Frame_Shift_Del_p.S1643fs|PHF3_uc011dxs.1_Frame_Shift_Del_p.S1000fs	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1731					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			ATACAGACTTCTCAAGCAGAA	0.393	GBM(135;136 1820 29512 34071 46235)		NA											15	16	---	---	---	---	NA	NA	NA	NA	NA
HOXA13	3209	broad.mit.edu	37	7	27238965	27238965	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:27238965delC	uc003szb.1	-	1	761	c.732delG	c.(730-732)CAGfs	p.Q244fs	uc003szc.1_5'Flank	NM_000522	NP_000513	P31271	HXA13_HUMAN	homeobox A13	244					skeletal system development	nucleus	sequence-specific DNA binding			breast(1)	1						CAGGCATGGGCTGATGGTGGT	0.667			NA	T	NUP98	AML								22	23	---	---	---	---	NA	NA	NA	NA	NA
PON2	5445	broad.mit.edu	37	7	95039225	95039225	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:95039225delG	uc003unv.2	-	6	804	c.683delC	c.(682-684)TCAfs	p.S228fs	PON2_uc003unu.2_Frame_Shift_Del_p.S216fs|PON2_uc010lfk.2_Intron|PON2_uc003unw.2_Frame_Shift_Del_p.S141fs	NM_000305	NP_000296	Q15165	PON2_HUMAN	paraoxonase 2 isoform 1	228					aromatic compound catabolic process	extracellular region|plasma membrane	arylesterase activity|identical protein binding|metal ion binding				0	all_cancers(62;9.35e-11)|all_epithelial(64;3.37e-09)		STAD - Stomach adenocarcinoma(171;0.0151)			ATCATCAGGTGAAATATTGAT	0.353	GBM(42;803 823 13649 23368 31463)		NA											40	111	---	---	---	---	NA	NA	NA	NA	NA
NAPEPLD	222236	broad.mit.edu	37	7	102769241	102769242	+	Splice_Site	INS	-	-	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:102769241_102769242insA	uc003vbc.2	-	2	313	c.-15_splice	c.e2-1		NAPEPLD_uc003vbd.2_Splice_Site|NAPEPLD_uc011klj.1_Splice_Site_p.S68_splice|NAPEPLD_uc003vbe.2_Splice_Site|NAPEPLD_uc003vbf.2_Intron	NM_198990	NP_945341	Q6IQ20	NAPEP_HUMAN	N-acyl phosphatidylethanolamine phospholipase D						phospholipid catabolic process	membrane	metal ion binding			skin(1)	1						GGTGAAGAACTAAAAAAAACAA	0.337			NA											16	51	---	---	---	---	NA	NA	NA	NA	NA
LAMB4	22798	broad.mit.edu	37	7	107745057	107745057	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:107745057delC	uc010ljo.1	-	9	962	c.878delG	c.(877-879)GGTfs	p.G293fs	LAMB4_uc003vey.2_Frame_Shift_Del_p.G293fs	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	293	Laminin EGF-like 1.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CACACACTGACCGTGAACCTG	0.502			NA											62	178	---	---	---	---	NA	NA	NA	NA	NA
EPHA1	2041	broad.mit.edu	37	7	143096462	143096462	+	Frame_Shift_Del	DEL	A	A	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr7:143096462delA	uc003wcz.2	-	5	967	c.880delT	c.(880-882)TGTfs	p.C294fs		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	294	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CACGTGAGACAATGGGGTGTG	0.602			NA											10	20	---	---	---	---	NA	NA	NA	NA	NA
DCAF4L2	138009	broad.mit.edu	37	8	88885757	88885757	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:88885757delC	uc003ydz.2	-	1	540	c.443delG	c.(442-444)GGAfs	p.G148fs		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	148										ovary(1)	1						ATCTGCAAGTCCCACGAAGCA	0.547			NA											9	56	---	---	---	---	NA	NA	NA	NA	NA
ABRA	137735	broad.mit.edu	37	8	107782411	107782411	+	Frame_Shift_Del	DEL	G	G	-	rs149782926		TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr8:107782411delG	uc003ymm.3	-	1	62	c.8delC	c.(7-9)CCGfs	p.P3fs		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	3					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			CTTTTCGCCCGGAGCCATGCT	0.592			NA											37	13	---	---	---	---	NA	NA	NA	NA	NA
RANBP6	26953	broad.mit.edu	37	9	6012689	6012690	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:6012689_6012690insT	uc003zjr.2	-	1	2929_2930	c.2918_2919insA	c.(2917-2919)AATfs	p.N973fs	RANBP6_uc011lmf.1_Frame_Shift_Ins_p.N621fs|RANBP6_uc003zjs.2_Frame_Shift_Ins_p.N561fs	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	973	HEAT 7.				protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		TAGCAATGACATTTTTTTTGGT	0.356			NA											13	27	---	---	---	---	NA	NA	NA	NA	NA
FGD3	89846	broad.mit.edu	37	9	95738685	95738685	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:95738685delG	uc004asw.2	+	3	775	c.147delG	c.(145-147)CTGfs	p.L49fs	FGD3_uc004asx.2_Frame_Shift_Del_p.L49fs|FGD3_uc004asz.2_Frame_Shift_Del_p.L49fs	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	49					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						CTGTCAGCCTGGCTGCAGCAG	0.647			NA											7	5	---	---	---	---	NA	NA	NA	NA	NA
OR13C8	138802	broad.mit.edu	37	9	107331774	107331774	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:107331774delC	uc011lvo.1	+	1	326	c.326delC	c.(325-327)GCCfs	p.A109fs		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCCATGGGGGCCACGGAGTGC	0.498			NA											23	50	---	---	---	---	NA	NA	NA	NA	NA
ACTL7B	10880	broad.mit.edu	37	9	111617354	111617354	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chr9:111617354delC	uc004bdi.2	-	1	922	c.857delG	c.(856-858)GGCfs	p.G286fs		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	286						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						GATGAGTTTGCCGTCCGGGAG	0.647			NA											24	47	---	---	---	---	NA	NA	NA	NA	NA
IRS4	8471	broad.mit.edu	37	X	107976481	107976482	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:107976481_107976482insA	uc004eoc.2	-	1	3126_3127	c.3093_3094insT	c.(3091-3096)CTTGCTfs	p.L1031fs		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1031_1032						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GCACTGTCAGCAAGAGCCATGG	0.485			NA											59	56	---	---	---	---	NA	NA	NA	NA	NA
GRIA3	2892	broad.mit.edu	37	X	122616661	122616661	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:122616661delC	uc004etq.3	+	16	2744	c.2451delC	c.(2449-2451)AGCfs	p.S817fs	GRIA3_uc004etr.3_Frame_Shift_Del_p.S817fs|GRIA3_uc004ets.3_RNA	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	817	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	ACAAGACCAGCGCTCTGAGCC	0.433			NA											107	71	---	---	---	---	NA	NA	NA	NA	NA
TMLHE	55217	broad.mit.edu	37	X	154754199	154754200	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7043-01A-11D-1945-08	TCGA-95-7043-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	86040fdc-caa7-4c13-af9c-c3f78b79930f	7a16b2f7-cb45-4f60-a779-4455e89b1f1e	g.chrX:154754199_154754200insT	uc004fnn.2	-	3	441_442	c.275_276insA	c.(274-276)CAGfs	p.Q92fs	TMLHE_uc004fno.2_Frame_Shift_Ins_p.Q92fs|TMLHE_uc004fnp.3_Frame_Shift_Ins_p.Q92fs	NM_018196	NP_060666	Q9NVH6	TMLH_HUMAN	trimethyllysine hydroxylase, epsilon	92					carnitine biosynthetic process	mitochondrial matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|trimethyllysine dioxygenase activity			ovary(1)	1	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Succinic acid(DB00139)|Vitamin C(DB00126)	CCAGGCTGCGCTGGTGAGTCTT	0.49			NA											232	101	---	---	---	---	NA	NA	NA	NA	NA
