Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CHD5	26038	broad.mit.edu	37	1	6186638	6186638	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:6186638C>A	uc001amb.1	-	26	4172	c.4072G>T	c.(4072-4074)GAC>TAC	p.D1358Y	CHD5_uc001alz.1_Missense_Mutation_p.D215Y|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1358					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCACCCTGGTCCTCCTGGGAG	0.672			NA											29	44					1.22384e-17	1.48857e-17	0.002836	1	0
CLSTN1	22883	broad.mit.edu	37	1	9790694	9790694	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:9790694C>T	uc001aqh.2	-	19	3577	c.2818G>A	c.(2818-2820)GAA>AAA	p.E940K	CLSTN1_uc001aqi.2_Missense_Mutation_p.E930K|CLSTN1_uc010oag.1_Missense_Mutation_p.E921K|CLSTN1_uc001aqf.2_Missense_Mutation_p.E204K	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	940	Glu-rich (highly acidic).|Cytoplasmic (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		TCCTCTTCTTCGCCGTCCTCG	0.532			NA											16	40					0	0	0.008871	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12252977	12252977	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:12252977G>T	uc001att.2	+	6	698	c.609G>T	c.(607-609)ACG>ACT	p.T203T	TNFRSF1B_uc001atu.2_Silent_p.T8T|TNFRSF1B_uc009vnk.2_RNA	NM_001066	NP_001057	P20333	TNR1B_HUMAN	tumor necrosis factor receptor 2 precursor	203	Extracellular (Potential).				apoptosis	extracellular region|integral to membrane|membrane raft|plasma membrane	tumor necrosis factor receptor activity			liver(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.72e-05)|all_lung(284;9.92e-05)|Renal(390;0.000147)|Colorectal(325;0.000584)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;5.52e-07)|COAD - Colon adenocarcinoma(227;0.000345)|BRCA - Breast invasive adenocarcinoma(304;0.000353)|Kidney(185;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00302)|STAD - Stomach adenocarcinoma(313;0.00815)|READ - Rectum adenocarcinoma(331;0.0284)	Etanercept(DB00005)|Infliximab(DB00065)	GCACGTCCACGTCCCCCACCC	0.622			NA											16	44					6.44725e-10	7.25052e-10	0.002299	1	0
SYF2	25949	broad.mit.edu	37	1	25549784	25549784	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:25549784C>G	uc001bjt.1	-	7	760	c.705G>C	c.(703-705)CAG>CAC	p.Q235H	SYF2_uc001bju.1_Missense_Mutation_p.Q193H	NM_015484	NP_056299	O95926	SYF2_HUMAN	SYF2 homolog, RNA splicing factor isoform 1	235						catalytic step 2 spliceosome					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-26)|Colorectal(126;2.54e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000455)|STAD - Stomach adenocarcinoma(196;0.000766)|KIRC - Kidney renal clear cell carcinoma(1967;0.00145)|GBM - Glioblastoma multiforme(114;0.00443)|READ - Rectum adenocarcinoma(331;0.0936)|Lung(427;0.201)		TTTCCAAATTCTGTTTAATTT	0.338			NA											28	77					0	0	0.008361	0	0
KIAA1522	57648	broad.mit.edu	37	1	33237907	33237907	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:33237907C>G	uc001bvv.2	+	6	3086	c.2950C>G	c.(2950-2952)CGA>GGA	p.R984G	KIAA1522_uc001bvu.1_Missense_Mutation_p.R1043G|KIAA1522_uc010ohm.1_Missense_Mutation_p.R995G|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	984	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				CAGTTACCCTCGAGCTGAGCC	0.662			NA											20	77					0	0	0.00278	0	0
CSMD2	114784	broad.mit.edu	37	1	34190196	34190197	+	Missense_Mutation	DNP	CG	CG	GA			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:34190196_34190197CG>GA	uc001bxn.1	-	18	2713_2714	c.2684_2685CG>TC	c.(2683-2685)TCG>TTC	p.S895F	CSMD2_uc001bxm.1_Missense_Mutation_p.S935F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	895	Sushi 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATGTGTAGCCCGAGTCACAGCT	0.589			NA											24	64					0	0	0.004672	0	0
CSF3R	1441	broad.mit.edu	37	1	36939405	36939405	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:36939405C>G	uc001caw.1	-	5	623	c.445G>C	c.(445-447)GAG>CAG	p.E149Q	CSF3R_uc009vvc.1_5'Flank|CSF3R_uc001cau.1_5'Flank|CSF3R_uc001cav.1_Missense_Mutation_p.E149Q|CSF3R_uc001cax.1_Missense_Mutation_p.E149Q|CSF3R_uc001cay.1_Missense_Mutation_p.E149Q	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	149	Fibronectin type-III 1.|Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	AGGTGGGTCTCAGGTCCTGGC	0.597			NA											20	54					0	0	0.008871	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37947399	37947399	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:37947399G>A	uc001cbb.3	+	4	931	c.781G>A	c.(781-783)GAG>AAG	p.E261K	ZC3H12A_uc001cbc.1_5'UTR	NM_025079	NP_079355	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	261					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GCGCTTCATCGAGGAGCGGCT	0.572			NA											14	22					0	0	0.003163	0	0
MACF1	23499	broad.mit.edu	37	1	39888568	39888568	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:39888568A>C	uc010oiu.1	+	24	11596	c.11465A>C	c.(11464-11466)CAG>CCG	p.Q3822P	MACF1_uc010ois.1_Missense_Mutation_p.Q3320P|MACF1_uc001cda.1_Missense_Mutation_p.Q3207P|MACF1_uc001cdc.1_Missense_Mutation_p.Q2386P	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	5387	Spectrin 7.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATCCAAGAACAGAAGGTAAGT	0.448			NA											12	27					0	0	0.001855	0	0
CCDC17	149483	broad.mit.edu	37	1	46085982	46085982	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:46085982G>A	uc010olt.1	-	13	1982	c.1834C>T	c.(1834-1836)CAC>TAC	p.H612Y	CCDC17_uc009vxy.2_Missense_Mutation_p.H580Y|CCDC17_uc010ols.1_Missense_Mutation_p.H603Y|CCDC17_uc001com.3_Missense_Mutation_p.H433Y|CCDC17_uc001con.3_RNA|CCDC17_uc009vxz.2_Missense_Mutation_p.H100Y	NM_001114938	NP_001108410	Q96LX7	CCD17_HUMAN	coiled-coil domain containing 17	612										ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GAACTGTGGTGAGGGCCCAAA	0.552			NA											7	24					0	0	0.004482	0	0
GLIS1	148979	broad.mit.edu	37	1	54060371	54060371	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:54060371C>A	uc001cvr.1	-	3	772	c.205G>T	c.(205-207)GGC>TGC	p.G69C		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	69					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGGGGTAGGCCCAAGACGCAG	0.667			NA											7	16					0.00198382	0.00204955	0.001984	1	0
IL23R	149233	broad.mit.edu	37	1	67635043	67635043	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:67635043G>T	uc001ddo.2	+	3	174	c.89G>T	c.(88-90)TGC>TTC	p.C30F	IL23R_uc009waz.2_5'UTR|IL23R_uc001ddp.2_RNA|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_5'UTR|IL23R_uc010opk.1_5'UTR|IL23R_uc010opl.1_5'UTR|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_5'UTR|IL23R_uc010opn.1_5'UTR|IL23R_uc001ddr.2_RNA	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	30	Extracellular (Potential).				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						AATATAAACTGCTCTGGCCAC	0.313			NA											13	42					1.49906e-05	1.58452e-05	0.00245	1	0
DIRAS3	9077	broad.mit.edu	37	1	68512795	68512795	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:68512795G>A	uc001ded.2	-	2	481	c.186C>T	c.(184-186)TTC>TTT	p.F62F	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	62					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						ACTCATGACGGAAGTTGCCGC	0.582			NA											44	103					0	0	0.00361	0	0
C1orf173	127254	broad.mit.edu	37	1	75037590	75037590	+	Silent	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:75037590T>A	uc001dgg.2	-	14	4023	c.3804A>T	c.(3802-3804)CTA>CTT	p.L1268L		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1268	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCTGGGTCCTTAGCACGACAT	0.572			NA											49	98					0	0	0.00361	0	0
LPHN2	23266	broad.mit.edu	37	1	82450289	82450289	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:82450289G>C	uc001dit.3	+	19	3435	c.3254G>C	c.(3253-3255)TGC>TCC	p.C1085S	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.C1085S|LPHN2_uc001div.2_Missense_Mutation_p.C1085S|LPHN2_uc009wcd.2_Missense_Mutation_p.C1085S|LPHN2_uc001diw.2_Missense_Mutation_p.C669S	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1098	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TATGGCAAGTGCTTCAGACAC	0.453			NA											35	76					0	0	0.005524	0	0
CLCA1	1179	broad.mit.edu	37	1	86959282	86959282	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:86959282G>C	uc001dlt.2	+	10	1809	c.1680G>C	c.(1678-1680)AAG>AAC	p.K560N	CLCA1_uc001dls.1_Missense_Mutation_p.K499N	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	560					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		GCATTGCTAAGGTATGGAGTC	0.388			NA											15	19					0	0	0.004007	0	0
ZNF326	284695	broad.mit.edu	37	1	90478797	90478797	+	Splice_Site	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:90478797G>T	uc001dnq.2	+	7	1065	c.926_splice	c.e7+1	p.R309_splice	ZNF326_uc009wda.1_Splice_Site_p.R220_splice|ZNF326_uc001dnr.2_Splice_Site_p.R103_splice	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		ATGGATACAGGTTTGTACTTA	0.348			NA											10	10					0.000442599	0.000460733	0.006214	1	0
SLC44A3	126969	broad.mit.edu	37	1	95290143	95290143	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:95290143C>A	uc001dqv.3	+	3	337	c.230C>A	c.(229-231)TCC>TAC	p.S77Y	SLC44A3_uc001dqx.3_Missense_Mutation_p.S77Y|SLC44A3_uc010otq.1_Missense_Mutation_p.S41Y|SLC44A3_uc010otr.1_Missense_Mutation_p.S41Y|SLC44A3_uc001dqw.3_Missense_Mutation_p.S29Y|SLC44A3_uc010ots.1_Missense_Mutation_p.S29Y|SLC44A3_uc009wds.2_5'UTR|SLC44A3_uc010ott.1_Missense_Mutation_p.S29Y|SLC44A3_uc010otu.1_5'Flank	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	77						integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	AAGAAGAACTCCCCCGTGGAA	0.507			NA											34	89					3.38236e-24	4.27311e-24	0.006999	1	0
VCAM1	7412	broad.mit.edu	37	1	101186295	101186295	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:101186295G>T	uc001dti.2	+	2	448	c.328G>T	c.(328-330)GTG>TTG	p.V110L	VCAM1_uc001dtj.2_Missense_Mutation_p.V110L|VCAM1_uc010ouj.1_Intron	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	110	Ig-like C2-type 2.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	AGGAATCCAGGTGGAGATCTA	0.308			NA											16	38					4.54149e-19	5.63374e-19	0.002299	1	0
COL11A1	1301	broad.mit.edu	37	1	103404613	103404613	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:103404613C>T	uc001dul.2	-	44	3734	c.3416G>A	c.(3415-3417)AGC>AAC	p.S1139N	COL11A1_uc001duk.2_Missense_Mutation_p.S335N|COL11A1_uc001dum.2_Missense_Mutation_p.S1151N|COL11A1_uc001dun.2_Missense_Mutation_p.S1100N|COL11A1_uc009weh.2_Missense_Mutation_p.S1023N	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1139	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GTCACCCTTGCTGCCTTTTTG	0.328			NA											40	85					0	0	0.00361	0	0
AMY2B	280	broad.mit.edu	37	1	104120463	104120463	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:104120463G>T	uc001duq.2	+	11	1958	c.1342G>T	c.(1342-1344)GAC>TAC	p.D448Y	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.D448Y|AMY2B_uc001dus.1_RNA	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	448					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		CAACAATGATGACTGGTAAGT	0.338			NA											63	110					1.15062e-32	1.50062e-32	0.00361	1	0
WDR77	79084	broad.mit.edu	37	1	111986713	111986713	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:111986713G>A	uc001ebb.2	-	5	566	c.527C>T	c.(526-528)TCT>TTT	p.S176F	WDR77_uc010owd.1_RNA|WDR77_uc010owe.1_Missense_Mutation_p.S112F	NM_024102	NP_077007	Q9BQA1	MEP50_HUMAN	WD repeat domain 77	176	WD 3.				ncRNA metabolic process|spliceosomal snRNP assembly	cytosol|nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding				0		all_cancers(81;0.000902)|all_epithelial(167;0.00056)|all_lung(203;0.00277)|Lung NSC(277;0.0043)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		CTTGTGAGGAGAGGCAGCAAC	0.468			NA											12	68					0	0	0.001855	0	0
LOC647121	647121	broad.mit.edu	37	1	121310581	121310581	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:121310581T>C	uc009wht.1	+	4	385	c.356T>C	c.(355-357)CTG>CCG	p.L119P	LOC647121_uc001eiu.1_RNA					Homo sapiens cDNA FLJ46881 fis, clone UTERU3015647, moderately similar to Embigin precursor.												0						CAGGAGTCTCTGGGCCAGTGA	0.333			NA											9	22					0	0	0.001882	0	0
SEC22B	9554	broad.mit.edu	37	1	145115793	145115793	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:145115793G>A	uc001eml.1	+	7	692	c.552G>A	c.(550-552)GCG>GCA	p.A184A	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	184	v-SNARE coiled-coil homology.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						GCCAGGATGCGAAGTACTTGA	0.398			NA											22	238					0	0	0.005443	0	0
BCL9	607	broad.mit.edu	37	1	147084819	147084819	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:147084819G>T	uc001epq.2	+	5	931	c.191G>T	c.(190-192)TGT>TTT	p.C64F	BCL9_uc010ozr.1_Intron	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	64					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCATCCCCCTGTGACTCCAAG	0.597			NA	T	IGH@|IGL@	B-ALL								7	29					8.12818e-05	8.53895e-05	0.001984	1	0
RFX5	5993	broad.mit.edu	37	1	151318730	151318730	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:151318730C>G	uc001exv.1	-	3	281	c.67G>C	c.(67-69)GAG>CAG	p.E23Q	RFX5_uc001exw.1_Missense_Mutation_p.E23Q|RFX5_uc009wmr.1_Missense_Mutation_p.E23Q|RFX5_uc010pcx.1_Missense_Mutation_p.E23Q	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	23						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCCCCAGCCTCAGCACCACCT	0.567			NA											90	100					0	0	0.00361	0	0
TCHH	7062	broad.mit.edu	37	1	152082320	152082320	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:152082320T>C	uc001ezp.2	-	2	3373	c.3373A>G	c.(3373-3375)AGA>GGA	p.R1125G	TCHH_uc009wne.1_Missense_Mutation_p.R1125G	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1125	4-8.|10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			cgttcctctctcagcagctgc	0.224			NA											4	153					0	0	0.009096	0	0
FLG2	388698	broad.mit.edu	37	1	152324674	152324674	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:152324674C>G	uc001ezw.3	-	3	5661	c.5588G>C	c.(5587-5589)GGA>GCA	p.G1863A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1863							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGGACTGTCCATGACCAGA	0.493			NA											164	198					0	0	0.00361	0	0
GATAD2B	57459	broad.mit.edu	37	1	153789011	153789011	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:153789011C>T	uc001fdb.3	-	7	1198	c.954G>A	c.(952-954)ATG>ATA	p.M318I		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	318						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AAGCAAGGTTCATATAGATGG	0.507			NA											37	41					0	0	0.009718	0	0
FCRL4	83417	broad.mit.edu	37	1	157555986	157555986	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:157555986C>A	uc001fqw.2	-	6	1243	c.1107G>T	c.(1105-1107)CAG>CAT	p.Q369H	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	369	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GCACCATGCTCTGGACAGGGC	0.448			NA									OREG0007229	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=FCRL4|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	32	114					6.03168e-27	7.69096e-27	0.004878	1	0
CD5L	922	broad.mit.edu	37	1	157803231	157803231	+	Missense_Mutation	SNP	C	C	G	rs146902396		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:157803231C>G	uc001frk.3	-	5	933	c.790G>C	c.(790-792)GTA>CTA	p.V264L		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	264	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GAGCCCCATACGCCCTTGTGC	0.567			NA											40	180					0	0	0.00361	0	0
OR10T2	128360	broad.mit.edu	37	1	158368962	158368962	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:158368962C>T	uc010pih.1	-	1	295	c.295G>A	c.(295-297)GCC>ACC	p.A99T		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AGCTGGGTGGCACAGGCCATG	0.498			NA											19	27					0	0	0.008871	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517795	158517795	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:158517795G>A	uc010pil.1	-	1	101	c.101C>T	c.(100-102)TCC>TTC	p.S34F		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CAGGAAAATGGAGAAAAAGAG	0.443			NA											23	18					0	0	0.00333	0	0
CADM3	57863	broad.mit.edu	37	1	159170669	159170669	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:159170669G>A	uc001ftl.2	+	9	1296	c.1154G>A	c.(1153-1155)GGC>GAC	p.G385D	CADM3_uc001ftk.2_Missense_Mutation_p.G419D|uc001ftm.1_RNA	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	385	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					AATGCAGAAGGCGGGCAGTCA	0.607			NA											55	80					0	0	0.00361	0	0
SLAMF8	56833	broad.mit.edu	37	1	159803054	159803054	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:159803054C>A	uc001fue.3	+	4	886	c.676C>A	c.(676-678)CCA>ACA	p.P226T		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	226	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					ATGTTCAGCACCAGGGAAGGC	0.572			NA											175	206					4.17301e-93	5.58029e-93	0.00361	1	0
CCDC19	25790	broad.mit.edu	37	1	159850455	159850455	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:159850455C>A	uc001fui.2	-	8	951	c.933G>T	c.(931-933)ATG>ATT	p.M311I	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.M226I|CCDC19_uc001ful.2_Missense_Mutation_p.M226I|CCDC19_uc009wtc.1_Missense_Mutation_p.M297I	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	311	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TCTCAGCTTGCATCTTCAGTT	0.473			NA											13	57					1.05317e-09	1.18245e-09	0.00245	1	0
IGSF8	93185	broad.mit.edu	37	1	160064708	160064708	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:160064708G>A	uc001fva.2	-	2	438	c.393C>T	c.(391-393)TCC>TCT	p.S131S	IGSF8_uc001fuz.2_Silent_p.S131S|IGSF8_uc009wtf.2_Silent_p.S131S	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	131	Ig-like C2-type 1.|Extracellular (Potential).				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GGGTATCAGTGGAGGGGGTGT	0.622			NA											20	73					0	0	0.00278	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161024435	161024435	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:161024435C>T	uc001fxl.2	-	4	752	c.406G>A	c.(406-408)GAA>AAA	p.E136K	ARHGAP30_uc001fxk.2_Missense_Mutation_p.E136K|ARHGAP30_uc001fxm.2_5'UTR|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_5'UTR	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	136	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ACAGGGAGTTCCCGAAGCACC	0.522			NA											33	127					0	0	0.009718	0	0
NUF2	83540	broad.mit.edu	37	1	163298026	163298026	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:163298026G>C	uc001gcq.1	+	4	507	c.207G>C	c.(205-207)GTG>GTC	p.V69V	NUF2_uc001gcp.2_Silent_p.V69V|NUF2_uc001gcr.1_Silent_p.V69V|NUF2_uc009wvc.1_Silent_p.V69V	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	69	Interaction with the N-terminus of NDC80.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					AGATGCCAGTGAACTCTGAAG	0.323			NA											50	49					0	0	0.00361	0	0
C1orf129	80133	broad.mit.edu	37	1	170967360	170967360	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:170967360T>A	uc001ghg.2	+	15	1671	c.1541T>A	c.(1540-1542)GTA>GAA	p.V514E	C1orf129_uc009wvy.2_Missense_Mutation_p.V321E|C1orf129_uc010plz.1_Missense_Mutation_p.V514E	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	514							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AAGCTCTCAGTAGAAGGTCCT	0.398			NA											23	85					0	0	0.001882	0	0
C1orf9	51430	broad.mit.edu	37	1	172579007	172579007	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:172579007G>C	uc001giq.3	+	24	3689	c.3373G>C	c.(3373-3375)GAA>CAA	p.E1125Q	C1orf9_uc009wwd.2_Missense_Mutation_p.E1081Q|C1orf9_uc010pmn.1_Missense_Mutation_p.E754Q|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	1125					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		AAAGCCTGAAGAACCATTGCA	0.368	Colon(43;174 953 11768 38880 47057)		NA											40	37					0	0	0.00361	0	0
TNR	7143	broad.mit.edu	37	1	175332847	175332847	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:175332847G>T	uc001gkp.1	-	11	2785	c.2704C>A	c.(2704-2706)CAA>AAA	p.Q902K	TNR_uc009wwu.1_Missense_Mutation_p.Q902K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	902	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TTGTTACCTTGGGTGGGTCGA	0.453			NA											52	125					4.60343e-24	5.79441e-24	0.00361	1	0
PAPPA2	60676	broad.mit.edu	37	1	176659359	176659359	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:176659359T>C	uc001gkz.2	+	5	3388	c.2224T>C	c.(2224-2226)TAC>CAC	p.Y742H	PAPPA2_uc001gky.1_Missense_Mutation_p.Y742H|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	742	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCTGGGACTCTACCATGTCTT	0.522			NA											53	142					0	0	0.00361	0	0
FAM5B	57795	broad.mit.edu	37	1	177199193	177199193	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:177199193G>T	uc001glf.2	+	2	493	c.181G>T	c.(181-183)GAC>TAC	p.D61Y		NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	61						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCTGCTCACAGACCGGGGCCC	0.642			NA											31	82					4.11147e-13	4.78046e-13	0.003755	1	0
SEC16B	89866	broad.mit.edu	37	1	177902413	177902413	+	Missense_Mutation	SNP	G	G	A	rs77169763		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:177902413G>A	uc001gli.1	-	22	2849	c.2759C>T	c.(2758-2760)TCG>TTG	p.S920L	SEC16B_uc001glk.1_Missense_Mutation_p.S597L|SEC16B_uc009wwy.1_Missense_Mutation_p.S475L|SEC16B_uc001glh.1_Missense_Mutation_p.S579L|SEC16B_uc009wwz.1_Missense_Mutation_p.S579L|SEC16B_uc001glj.1_Missense_Mutation_p.S921L	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	920					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						GGTGGGCTTCGATCGAAACCA	0.577			NA											11	7					0	0	0.001368	0	0
C1orf26	54823	broad.mit.edu	37	1	185143850	185143850	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:185143850A>T	uc001grg.3	+	5	685	c.571A>T	c.(571-573)AAC>TAC	p.N191Y	C1orf26_uc001grh.3_Missense_Mutation_p.N191Y	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	191											0						GAAAGGAAGAAACAGTAAATT	0.348			NA											20	18					0	0	0.001882	0	0
TRAF5	7188	broad.mit.edu	37	1	211529722	211529722	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:211529722A>G	uc001hih.2	+	4	350	c.290A>G	c.(289-291)AAT>AGT	p.N97S	TRAF5_uc001hii.2_Missense_Mutation_p.N97S|TRAF5_uc010psx.1_Missense_Mutation_p.N97S|TRAF5_uc010psy.1_Missense_Mutation_p.N97S|TRAF5_uc001hij.2_Missense_Mutation_p.N97S	NM_004619	NP_004610	O00463	TRAF5_HUMAN	TNF receptor-associated factor 5	97					apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis	CD40 receptor complex|centrosome|internal side of plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(2)|ovary(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00946)|all cancers(67;0.0808)|Epithelial(68;0.144)		TTTAAAGACAATTGTTGCAAA	0.358			NA											34	50					0	0	0.003755	0	0
USH2A	7399	broad.mit.edu	37	1	215848206	215848206	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:215848206G>T	uc001hku.1	-	63	13434	c.13047C>A	c.(13045-13047)ATC>ATA	p.I4349I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4349	Fibronectin type-III 28.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CCAGAGTTGTGATGCTGGTGG	0.512			NA								HNSCC(13;0.011)			34	32					3.33393e-15	3.95005e-15	0.004878	1	0
USH2A	7399	broad.mit.edu	37	1	216062108	216062108	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:216062108G>T	uc001hku.1	-	41	8270	c.7883C>A	c.(7882-7884)CCA>CAA	p.P2628Q		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2628	Extracellular (Potential).|Fibronectin type-III 13.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTCTGGACTTGGGATCCCTTC	0.498			NA								HNSCC(13;0.011)			35	28					6.00712e-18	7.31951e-18	0.002445	1	0
USH2A	7399	broad.mit.edu	37	1	216246500	216246500	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:216246500G>A	uc001hku.1	-	28	6102	c.5715C>T	c.(5713-5715)TCC>TCT	p.S1905S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1905	Fibronectin type-III 5.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AAACCAGGATGGAGTCATTTC	0.473			NA								HNSCC(13;0.011)			20	23					0	0	0.008871	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220327347	220327347	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:220327347C>T	uc010puk.1	-	32	3772	c.3608G>A	c.(3607-3609)GGG>GAG	p.G1203E	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Missense_Mutation_p.G783E|RAB3GAP2_uc001hmh.2_Missense_Mutation_p.G147E	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	1203					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		ATCCATTTCCCCACTAGGTAA	0.308			NA											5	195					0	0	0.001168	0	0
SRP9	6726	broad.mit.edu	37	1	225976981	225976981	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:225976981A>G	uc001hpg.2	+	3	309	c.181A>G	c.(181-183)AAG>GAG	p.K61E	SRP9_uc001hpf.3_RNA|SRP9_uc001hph.2_3'UTR|SRP9_uc001hpi.3_RNA	NM_003133	NP_003124	P49458	SRP09_HUMAN	signal recognition particle 9kDa isoform 2	61					negative regulation of translational elongation|SRP-dependent cotranslational protein targeting to membrane	cytosol|signal recognition particle receptor complex|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|signal recognition particle binding				0						AGATGTAAAGAAGATTGAGAA	0.348			NA											17	12					0	0	0.008361	0	0
LEFTY1	10637	broad.mit.edu	37	1	226076613	226076613	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:226076613C>A	uc001hpo.2	-	1	224	c.154G>T	c.(154-156)GTC>TTC	p.V52F	LEFTY1_uc010pvj.1_Intron|LEFTY1_uc009xej.1_Missense_Mutation_p.V52F	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	52					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					GTGGGGATGACCAGCTCCTCC	0.701			NA											4	33					1.23904e-05	1.3117e-05	0.000602	1	0
SIPA1L2	57568	broad.mit.edu	37	1	232577108	232577108	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:232577108G>A	uc001hvg.2	-	12	3729	c.3571C>T	c.(3571-3573)CTG>TTG	p.L1191L	SIPA1L2_uc001hvf.2_Silent_p.L265L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1191					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TAGGAACCCAGGACTTTGGAA	0.408			NA											88	280					0	0	0.00361	0	0
TARBP1	6894	broad.mit.edu	37	1	234546274	234546274	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:234546274C>T	uc001hwd.2	-	23	3709	c.3709G>A	c.(3709-3711)GAA>AAA	p.E1237K		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1237					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			AGATTTTCTTCACCCTGAAAA	0.348			NA											9	44					0	0	0.004482	0	0
RBM34	23029	broad.mit.edu	37	1	235324524	235324524	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:235324524C>T	uc001hwn.2	-	1	48	c.18G>A	c.(16-18)ATG>ATA	p.M6I	RBM34_uc001hwo.2_RNA|ARID4B_uc001hwp.2_RNA|RBM34_uc010pxp.1_Missense_Mutation_p.M6I	NM_015014	NP_055829	P42696	RBM34_HUMAN	RNA binding motif protein 34 isoform 1	6						nucleolus	nucleotide binding|RNA binding			central_nervous_system(1)	1	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;5.43e-05)|Epithelial(3;0.000121)			TCCGTTTGCTCATCCCTTCCA	0.622			NA											77	120					0	0	0.00361	0	0
RYR2	6262	broad.mit.edu	37	1	237780642	237780642	+	Silent	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:237780642C>A	uc001hyl.1	+	38	5892	c.5772C>A	c.(5770-5772)GCC>GCA	p.A1924A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1924	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGATAGAAGCCATTGTAGCCT	0.433			NA											8	30					3.09899e-07	3.35846e-07	0.004482	1	0
CNST	163882	broad.mit.edu	37	1	246784876	246784876	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:246784876A>G	uc001ibp.2	+	3	903	c.525A>G	c.(523-525)TCA>TCG	p.S175S	CNST_uc001ibo.3_Silent_p.S175S	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	175					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						CTCTGTTTTCACTTATACGAG	0.453			NA											52	170					0	0	0.00361	0	0
OR2G2	81470	broad.mit.edu	37	1	247752236	247752236	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:247752236G>T	uc010pyy.1	+	1	575	c.575G>T	c.(574-576)TGT>TTT	p.C192F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AAGCTGGCTTGTGTGGGCACC	0.537			NA											54	78					1.0442e-30	1.35924e-30	0.00361	1	0
OR14C36	127066	broad.mit.edu	37	1	248512673	248512673	+	Silent	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:248512673C>A	uc010pzl.1	+	1	597	c.597C>A	c.(595-597)GTC>GTA	p.V199V		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGATTGTTGTCTCTGCTCTGG	0.483			NA											26	86					3.73988e-18	4.57319e-18	0.00632	1	0
LARP4B	23185	broad.mit.edu	37	10	871104	871104	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:871104G>A	uc001ifs.1	-	12	1426	c.1385C>T	c.(1384-1386)ACA>ATA	p.T462I		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	462							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						TTGAATCCGTGTTCTAGTTTG	0.493			NA											54	86					0	0	0.00361	0	0
FBXO18	84893	broad.mit.edu	37	10	5965635	5965635	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:5965635C>T	uc001iis.2	+	16	2469	c.2374C>T	c.(2374-2376)CAG>TAG	p.Q792*	FBXO18_uc001iir.2_Nonsense_Mutation_p.Q718*|FBXO18_uc009xig.2_Nonsense_Mutation_p.Q718*|FBXO18_uc001iit.2_Nonsense_Mutation_p.Q843*	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	792					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GATCCTTCTTCAGCCAGAGGA	0.418			NA											17	52					0	0	0.008871	0	0
PHYH	5264	broad.mit.edu	37	10	13337539	13337539	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:13337539C>G	uc001imf.2	-	3	290	c.202G>C	c.(202-204)GTA>CTA	p.V68L	PHYH_uc001ime.2_5'UTR|PHYH_uc001img.2_Missense_Mutation_p.V49L	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	68					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	TTTTTGATTACTAGAAACCCA	0.323			NA											13	64					0	0	0.001855	0	0
KIF5B	3799	broad.mit.edu	37	10	32329346	32329346	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:32329346C>T	uc001iwe.3	-	3	724	c.254G>A	c.(253-255)GGA>GAA	p.G85E		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	85	Kinesin-motor.|ATP.				stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				GGATGTTTGTCCATATGCAAA	0.323			NA											10	54					0	0	0.008291	0	0
C10orf68	79741	broad.mit.edu	37	10	33137593	33137593	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:33137593C>T	uc001iwn.3	+	19	2044	c.1571C>T	c.(1570-1572)ACA>ATA	p.T524I	C10orf68_uc001iwl.1_Missense_Mutation_p.T483I|C10orf68_uc001iwm.1_Missense_Mutation_p.T528I|C10orf68_uc010qei.1_Missense_Mutation_p.T500I|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	524										skin(2)|ovary(1)	3						AGGAGCATTACACCAAGTAAA	0.279			NA											11	50					0	0	0.000978	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49662178	49662178	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:49662178C>T	uc001jgt.2	-	7	1116	c.819G>A	c.(817-819)GTG>GTA	p.V273V	ARHGAP22_uc001jgs.2_Silent_p.V183V|ARHGAP22_uc001jgu.2_Silent_p.V289V|ARHGAP22_uc010qgl.1_Silent_p.V230V|ARHGAP22_uc010qgm.1_Silent_p.V279V|ARHGAP22_uc001jgv.2_5'UTR|ARHGAP22_uc001jgr.2_5'Flank	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	273	Rho-GAP.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GAAGGTTGCTCACTTGTTTAG	0.527			NA											41	80					0	0	0.00361	0	0
OGDHL	55753	broad.mit.edu	37	10	50957830	50957830	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:50957830C>A	uc001jie.2	-	8	1071	c.929G>T	c.(928-930)CGC>CTC	p.R310L	OGDHL_uc009xog.2_Missense_Mutation_p.R337L|OGDHL_uc010qgt.1_Missense_Mutation_p.R253L|OGDHL_uc010qgu.1_Missense_Mutation_p.R101L|OGDHL_uc009xoh.2_Missense_Mutation_p.R101L	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	310					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CAGGTCCTTGCGGATCACGTT	0.672			NA											11	14					1.08611e-07	1.18831e-07	0.000978	1	0
A1CF	29974	broad.mit.edu	37	10	52575818	52575818	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:52575818G>C	uc001jjj.2	-	9	1277	c.1089C>G	c.(1087-1089)GCC>GCG	p.A363A	A1CF_uc010qhn.1_Silent_p.A371A|A1CF_uc001jji.2_Silent_p.A363A|A1CF_uc001jjh.2_Silent_p.A371A|A1CF_uc010qho.1_Silent_p.A371A|A1CF_uc009xov.2_Silent_p.A363A	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	363	Required for nuclear localization.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GTCCTTTGGTGGCTGGGAAAT	0.483			NA											17	51					0	0	0.008871	0	0
PCDH15	65217	broad.mit.edu	37	10	55591228	55591228	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:55591228C>T	uc001jju.1	-	30	4444	c.4049G>A	c.(4048-4050)CGC>CAC	p.R1350H	PCDH15_uc010qhq.1_Missense_Mutation_p.R1355H|PCDH15_uc010qhr.1_Missense_Mutation_p.R1350H|PCDH15_uc010qhs.1_Missense_Mutation_p.R1362H|PCDH15_uc010qht.1_Missense_Mutation_p.R1357H|PCDH15_uc010qhu.1_Missense_Mutation_p.R1350H|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R1350H|PCDH15_uc010qhw.1_Missense_Mutation_p.R1313H|PCDH15_uc010qhx.1_Missense_Mutation_p.R1279H|PCDH15_uc010qhy.1_Missense_Mutation_p.R1355H|PCDH15_uc010qhz.1_Missense_Mutation_p.R1350H|PCDH15_uc010qia.1_Missense_Mutation_p.R1328H|PCDH15_uc010qib.1_Missense_Mutation_p.R1328H	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1350	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTCCAGAATGCGTCCTCCTTC	0.418			NA								HNSCC(58;0.16)			11	49					0	0	0.001855	0	0
IPMK	253430	broad.mit.edu	37	10	60027344	60027344	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:60027344G>A	uc001jkb.2	-	1	351	c.28C>T	c.(28-30)CGG>TGG	p.R10W	CISD1_uc001jkc.3_5'Flank	NM_152230	NP_689416	Q8NFU5	IPMK_HUMAN	inositol polyphosphate multikinase	10						nucleus	ATP binding|inositol trisphosphate 6-kinase activity			ovary(1)	1						GCCTCGACCCGGAGGGGGGAT	0.677			NA											5	5					0	0	0.00308	0	0
ANK3	288	broad.mit.edu	37	10	61932732	61932732	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:61932732C>T	uc001jky.2	-	20	2500	c.2308G>A	c.(2308-2310)GCA>ACA	p.A770T	ANK3_uc001jkx.2_5'Flank|ANK3_uc010qih.1_Missense_Mutation_p.A753T|ANK3_uc001jkz.3_Missense_Mutation_p.A764T|ANK3_uc001jlb.1_Missense_Mutation_p.A299T|ANK3_uc001jlc.1_Missense_Mutation_p.A431T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	770	ANK 22.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGCTGTGCTGCTTGATGTAAT	0.428			NA											16	80					0	0	0.008871	0	0
MYPN	84665	broad.mit.edu	37	10	69926080	69926080	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:69926080C>A	uc001jnm.3	+	11	1815	c.1630C>A	c.(1630-1632)CTT>ATT	p.L544I	MYPN_uc001jnl.1_Missense_Mutation_p.L544I|MYPN_uc001jnn.3_Missense_Mutation_p.L269I|MYPN_uc001jno.3_Missense_Mutation_p.L544I|MYPN_uc009xps.2_Missense_Mutation_p.L544I|MYPN_uc009xpt.2_Missense_Mutation_p.L544I|MYPN_uc010qit.1_Missense_Mutation_p.L250I|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	544						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CAACGGGTCTCTTCACTCAGC	0.552			NA											39	37					8.94452e-30	1.15773e-29	0.00361	1	0
DDX50	79009	broad.mit.edu	37	10	70706177	70706177	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:70706177G>C	uc001jou.2	+	15	2112	c.2005G>C	c.(2005-2007)GAT>CAT	p.D669H	DDX50_uc010qjc.1_Intron	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	669						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						AGAATATTATGATGGAAACAC	0.488			NA											14	49					0	0	0.003163	0	0
C10orf27	219793	broad.mit.edu	37	10	72539364	72539364	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:72539364G>A	uc001jrj.1	-	5	802	c.412C>T	c.(412-414)CCC>TCC	p.P138S	C10orf27_uc010qjm.1_Missense_Mutation_p.P138S|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Missense_Mutation_p.P138S|C10orf27_uc009xqi.1_Intron|C10orf27_uc010qjo.1_Missense_Mutation_p.P127S|C10orf27_uc009xqj.1_Silent_p.T132T|C10orf27_uc010qjp.1_Missense_Mutation_p.P127S	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	138					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						GAAAGCTGGGGGTTCCGATTA	0.582			NA											20	30					0	0	0.001882	0	0
GRID1	2894	broad.mit.edu	37	10	87615890	87615890	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:87615890T>C	uc001kdl.1	-	7	1110	c.1009A>G	c.(1009-1011)AAG>GAG	p.K337E	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	337	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TCCTCCAGCTTCCTGTGAAAG	0.512			NA								Multiple Myeloma(13;0.14)			27	47					0	0	0.009535	0	0
BMPR1A	657	broad.mit.edu	37	10	88659610	88659610	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:88659610C>G	uc001kdy.2	+	6	941	c.393C>G	c.(391-393)AAC>AAG	p.N131K		NM_004329	NP_004320	P36894	BMR1A_HUMAN	bone morphogenetic protein receptor, type IA	131	Extracellular (Potential).				BMP signaling pathway|immune response|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	integral to membrane|plasma membrane	ATP binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta receptor activity			lung(3)|large_intestine(1)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	8						ATTTATGTAACCAGTATTTGC	0.413	Ovarian(190;603 2086 22044 30335 47971)		NA	Mis|N|F			gastrointestinal polyps			Hereditary_Mixed_Polyposis_syndrome_type_2|Juvenile_Polyposis				3	104					0	0	0.000602	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98380131	98380131	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:98380131G>A	uc001kmq.2	-	12	2047	c.1919C>T	c.(1918-1920)TCG>TTG	p.S640L	PIK3AP1_uc001kmo.2_Missense_Mutation_p.S239L|PIK3AP1_uc001kmp.2_Missense_Mutation_p.S462L	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	640						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		AAAGGACTCCGATCGTTTCTT	0.368			NA											72	127					0	0	0.00361	0	0
SORCS1	114815	broad.mit.edu	37	10	108412183	108412183	+	Missense_Mutation	SNP	G	G	T	rs150967356	byFrequency	TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:108412183G>T	uc001kym.2	-	18	2440	c.2432C>A	c.(2431-2433)GCG>GAG	p.A811E	SORCS1_uc001kyl.2_Missense_Mutation_p.A811E|SORCS1_uc009xxs.2_Missense_Mutation_p.A811E|SORCS1_uc001kyn.1_Missense_Mutation_p.A811E|SORCS1_uc001kyo.2_Missense_Mutation_p.A811E	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	811	Lumenal (Potential).|PKD.					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TCCTTGTTCCGCTGTCAGCTT	0.522			NA											3	89					0.00909568	0.00929901	0.009096	1	0
SMC3	9126	broad.mit.edu	37	10	112337194	112337194	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:112337194C>T	uc001kze.2	+	5	340	c.214C>T	c.(214-216)CGT>TGT	p.R72C		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	72					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		TACTGGTCCTCGTGTTATTTC	0.299			NA											10	18					0	0	0.001855	0	0
TDRD1	56165	broad.mit.edu	37	10	115986915	115986915	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:115986915C>T	uc001lbg.1	+	23	3413	c.3260C>T	c.(3259-3261)TCT>TTT	p.S1087F	TDRD1_uc001lbf.2_Missense_Mutation_p.S964F|TDRD1_uc001lbh.1_Missense_Mutation_p.S1074F|TDRD1_uc001lbi.1_Missense_Mutation_p.S1078F|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.S796F	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	1087					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		GTAATGCTTTCTGTGAAAGGA	0.328			NA											13	24					0	0	0.001855	0	0
ATRNL1	26033	broad.mit.edu	37	10	117607396	117607396	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:117607396C>T	uc001lcg.2	+	28	4298	c.3912C>T	c.(3910-3912)CCC>CCT	p.P1304P	ATRNL1_uc010qsm.1_Silent_p.P433P|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1304	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AGGGGGCACCCAAGCCAATTG	0.458			NA											12	18					0	0	0.001368	0	0
PNLIPRP2	5408	broad.mit.edu	37	10	118386379	118386379	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:118386379T>A	uc001lcq.2	+	7	361	c.338T>A	c.(337-339)ATG>AAG	p.M113K	PNLIPRP2_uc009xyu.1_RNA|PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	112					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		CCCCAGAAAATGTTTGAAGTG	0.522			NA											10	12					0	0	0.001855	0	0
ATE1	11101	broad.mit.edu	37	10	123662043	123662043	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:123662043C>A	uc001lfp.2	-	6	758	c.676G>T	c.(676-678)GCT>TCT	p.A226S	ATE1_uc001lfq.2_Missense_Mutation_p.A226S|ATE1_uc010qtr.1_Missense_Mutation_p.A111S|ATE1_uc010qts.1_Missense_Mutation_p.A130S|ATE1_uc010qtt.1_Missense_Mutation_p.A219S|ATE1_uc001lfr.2_Intron|ATE1_uc009xzu.2_Intron	NM_007041	NP_008972	O95260	ATE1_HUMAN	arginyltransferase 1 isoform 2	226					protein arginylation	cytoplasm|nucleus	acyltransferase activity|arginyltransferase activity				0		all_neural(114;0.061)|Lung NSC(174;0.095)|all_lung(145;0.124)|Breast(234;0.212)				AGTTCTCCAGCTGGGTTCTGC	0.433			NA											16	37					0.000308642	0.000321776	0.003163	1	0
TACC2	10579	broad.mit.edu	37	10	123970110	123970110	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:123970110C>T	uc001lfv.2	+	9	6530	c.6170C>T	c.(6169-6171)TCA>TTA	p.S2057L	TACC2_uc001lfw.2_Missense_Mutation_p.S203L|TACC2_uc009xzx.2_Missense_Mutation_p.S2012L|TACC2_uc010qtv.1_Missense_Mutation_p.S2061L|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.S135L|TACC2_uc001lga.2_Missense_Mutation_p.S135L|TACC2_uc009xzy.2_Missense_Mutation_p.S135L|TACC2_uc001lgb.2_Missense_Mutation_p.S92L|TACC2_uc010qtw.1_Missense_Mutation_p.S152L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2057						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CCTCGTGCCTCAGACGCTAAG	0.522			NA											27	58					0	0	0.008361	0	0
C10orf137	26098	broad.mit.edu	37	10	127414318	127414318	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:127414318G>C	uc001liq.1	+	6	996	c.703G>C	c.(703-705)GAT>CAT	p.D235H	C10orf137_uc001lin.2_Missense_Mutation_p.D235H|C10orf137_uc001lio.1_Missense_Mutation_p.D235H|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	235					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GTCCAGTTCAGATCAGACAAA	0.483			NA											13	31					0	0	0.001368	0	0
MMP21	118856	broad.mit.edu	37	10	127460821	127460821	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:127460821G>C	uc001liu.2	-	4	945	c.945C>G	c.(943-945)GAC>GAG	p.D315E		NM_147191	NP_671724	Q8N119	MMP21_HUMAN	matrix metalloproteinase 21 preproprotein	315					proteolysis	extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				TGTCTGACCAGTCCAACTCAA	0.517			NA											22	74					0	0	0.00278	0	0
EBF3	253738	broad.mit.edu	37	10	131761712	131761712	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:131761712G>T	uc001lki.1	-	2	269	c.210C>A	c.(208-210)TTC>TTA	p.F70L	EBF3_uc010qur.1_Missense_Mutation_p.F56L	NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	70					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GCGCCAGCACGAAGTGGAAGA	0.582			NA											15	65					6.31663e-08	6.93313e-08	0.003163	1	0
C10orf91	170393	broad.mit.edu	37	10	134261355	134261355	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:134261355G>A	uc001llm.2	+	3	268	c.228G>A	c.(226-228)ACG>ACA	p.T76T		NM_173541	NP_775812	Q5T1B1	CJ091_HUMAN	hypothetical protein LOC170393	76										ovary(1)	1		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;6.95e-05)|Epithelial(32;0.000142)|all cancers(32;0.000162)		CCCAGACCACGAGAGCGCTTT	0.627			NA											51	167					0	0	0.00361	0	0
OR51F1	256892	broad.mit.edu	37	11	4790238	4790238	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:4790238C>A	uc010qyl.1	-	1	910	c.910G>T	c.(910-912)GCT>TCT	p.A304S		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	304						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		CTGAGCATAGCCTTGCGGATT	0.428			NA											26	76					5.45727e-16	6.54491e-16	0.008361	1	0
OR51B2	79345	broad.mit.edu	37	11	5345279	5345279	+	Silent	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:5345279T>C	uc001mao.1	-	1	304	c.249A>G	c.(247-249)CTA>CTG	p.L83L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATTCACCCATAGGATGCCCA	0.507			NA											18	68					0	0	0.007413	0	0
OR10A2	341276	broad.mit.edu	37	11	6891617	6891617	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:6891617C>A	uc001meu.1	+	1	632	c.632C>A	c.(631-633)GCC>GAC	p.A211D		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	211	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ATTGCTGCTGCCATCCTCAAG	0.453			NA											46	82					4.88482e-21	6.09271e-21	0.00361	1	0
NLRP14	338323	broad.mit.edu	37	11	7064056	7064056	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:7064056G>T	uc001mfb.1	+	4	1122	c.799G>T	c.(799-801)GCC>TCC	p.A267S		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	267	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ACTGAACTTTGCCTTTGAAGA	0.468			NA											30	65					4.02929e-09	4.50178e-09	0.002096	1	0
PPFIBP2	8495	broad.mit.edu	37	11	7662787	7662787	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:7662787C>A	uc001mfj.3	+	16	1841	c.1453C>A	c.(1453-1455)CCT>ACT	p.P485T	PPFIBP2_uc010rbb.1_Missense_Mutation_p.P408T|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Missense_Mutation_p.P419T|PPFIBP2_uc010rbd.1_Missense_Mutation_p.P327T|PPFIBP2_uc010rbe.1_Missense_Mutation_p.P373T|PPFIBP2_uc001mfl.3_Missense_Mutation_p.P342T|PPFIBP2_uc009yfj.1_Missense_Mutation_p.P129T	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	485					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		TGAATCAGGTCCTCAGTCTCC	0.473			NA											28	69					1.12875e-08	1.25295e-08	0.00632	1	0
OVCH2	341277	broad.mit.edu	37	11	7718041	7718041	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:7718041G>A	uc010rbf.1	-	10	1112	c.1112C>T	c.(1111-1113)TCA>TTA	p.S371L		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		AGAATACATTGACAGGTAACT	0.453			NA											20	39					0	0	0.001882	0	0
SERGEF	26297	broad.mit.edu	37	11	17981053	17981053	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:17981053C>T	uc001mnm.2	-	9	1055	c.975G>A	c.(973-975)ATG>ATA	p.M325I	SERGEF_uc009yhd.2_RNA|SERGEF_uc001mnn.2_Intron|SERGEF_uc010rcz.1_Intron|SERGEF_uc001mno.1_Missense_Mutation_p.M211I	NM_012139	NP_036271	Q9UGK8	SRGEF_HUMAN	deafness locus associated putative guanine	325	RCC1 6.				negative regulation of protein secretion|signal transduction	cytoplasm|nucleus	protein binding|Ran guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1						GAGACGAAGGCATGCTGTTCG	0.418			NA											20	53					0	0	0.00278	0	0
NAV2	89797	broad.mit.edu	37	11	20129313	20129313	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:20129313C>T	uc001mpr.3	+	36	7315	c.6954C>T	c.(6952-6954)GTC>GTT	p.V2318V	NAV2_uc001mpp.2_Silent_p.V2251V|NAV2_uc009yhx.2_Silent_p.V1379V|NAV2_uc009yhz.2_Silent_p.V960V|NAV2_uc001mpu.2_Silent_p.V753V|NAV2_uc001mpv.2_Silent_p.V77V	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2374						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						TGGAAGCCGTCAGAGAAGGAC	0.552			NA											63	117					0	0	0.00361	0	0
PRMT3	10196	broad.mit.edu	37	11	20483592	20483592	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:20483592T>C	uc001mqb.2	+	12	1356	c.1139T>C	c.(1138-1140)ATT>ACT	p.I380T	PRMT3_uc001mqc.2_Missense_Mutation_p.I303T|PRMT3_uc010rdn.1_Missense_Mutation_p.I318T	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	380							zinc ion binding				0						GCTGATAGAATTGCTTTTTGG	0.388			NA											36	77					0	0	0.004878	0	0
C11orf74	119710	broad.mit.edu	37	11	36657643	36657643	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:36657643G>T	uc001mwy.1	+	4	407	c.334G>T	c.(334-336)GAG>TAG	p.E112*	C11orf74_uc010rfd.1_Intron|C11orf74_uc001mww.1_Intron|C11orf74_uc001mwx.1_Intron|C11orf74_uc001mwz.1_Intron|C11orf74_uc010rfe.1_RNA	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	112											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				CATGGATGAAGAGATTAAACC	0.328			NA											15	20					3.99206e-14	4.6733e-14	0.007413	1	0
OR4A5	81318	broad.mit.edu	37	11	51412202	51412202	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:51412202G>T	uc001nhi.1	-	1	194	c.194C>A	c.(193-195)TCA>TAA	p.S65*		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				ATCTATAAATGACAGGCAGGC	0.443			NA											17	52					4.63292e-17	5.61517e-17	0.008871	1	0
OR4A16	81327	broad.mit.edu	37	11	55111087	55111088	+	Missense_Mutation	DNP	GG	GG	CT			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:55111087_55111088GG>CT	uc010rie.1	+	1	411_412	c.411_412GG>CT	c.(409-414)CTGGTT>CTCTTT	p.V138F		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	138	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TGAATCGACTGGTTTGCATCCT	0.47			NA											29	60					0	0	0.004672	0	0
OR5D13	390142	broad.mit.edu	37	11	55541372	55541372	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:55541372G>T	uc010ril.1	+	1	459	c.459G>T	c.(457-459)TGG>TGT	p.W153C		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				CCTATACATGGGGGATAGTGT	0.408			NA											40	122					1.61572e-30	2.09922e-30	0.002522	1	0
OR5AS1	219447	broad.mit.edu	37	11	55798703	55798703	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:55798703C>A	uc010riw.1	+	1	809	c.809C>A	c.(808-810)ACT>AAT	p.T270N		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TCCCTAGACACTGATAAGGTG	0.398			NA											15	45					7.93312e-07	8.52997e-07	0.00245	1	0
OR5J2	282775	broad.mit.edu	37	11	55944812	55944812	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:55944812C>A	uc010rjb.1	+	1	719	c.719C>A	c.(718-720)ACC>AAC	p.T240N		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					GCCTTCTCCACCTGTGCCTCT	0.468			NA											32	68					2.52637e-11	2.89331e-11	0.005524	1	0
OR5T2	219464	broad.mit.edu	37	11	55999647	55999647	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:55999647A>T	uc010rjc.1	-	1	1015	c.1015T>A	c.(1015-1017)TCA>ACA	p.S339T		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	339	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTTTTCATTGAGTCTTTTACA	0.333			NA											25	45					0	0	0.004656	0	0
LRRC55	219527	broad.mit.edu	37	11	56949704	56949704	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:56949704C>A	uc001njl.1	+	1	484	c.337C>A	c.(337-339)CTC>ATC	p.L113I		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	83	LRR 1.					integral to membrane					0						CACCCGAAACCTCAGCCTGGC	0.587			NA											23	41					1.80694e-10	2.04886e-10	0.009535	1	0
CLP1	10978	broad.mit.edu	37	11	57428873	57428873	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:57428873C>T	uc001nkw.2	+	3	1382	c.1243C>T	c.(1243-1245)CTC>TTC	p.L415F	CLP1_uc010rjw.1_Missense_Mutation_p.L351F|CLP1_uc009yml.2_Missense_Mutation_p.L415F	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	415					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						GAACTTCCTTCTCATCATGGA	0.527			NA											4	138					0	0	0.009096	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958095	57958095	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:57958095A>G	uc010rka.1	+	1	133	c.133A>G	c.(133-135)ATG>GTG	p.M45V		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				GAACACAGGCATGATCCTCCT	0.498			NA											11	19					0	0	0.000978	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995839	57995839	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:57995839A>G	uc010rkd.1	-	1	509	c.509T>C	c.(508-510)CTG>CCG	p.L170P		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				GCAAAAGGGCAGGGTGAAGAT	0.652			NA											13	24					0	0	0.00245	0	0
OSBP	5007	broad.mit.edu	37	11	59367987	59367987	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:59367987G>C	uc001noc.1	-	7	1773	c.1293C>G	c.(1291-1293)CTC>CTG	p.L431L	OSBP_uc009ymr.1_RNA	NM_002556	NP_002547	P22059	OSBP1_HUMAN	oxysterol binding protein	431	Sterol binding (By similarity).				lipid transport	Golgi membrane	oxysterol binding			large_intestine(1)	1		all_epithelial(135;0.000236)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		GGATCTTAGAGAGTTCTTTTC	0.478			NA											7	158					0	0	0.008291	0	0
CCDC86	79080	broad.mit.edu	37	11	60610191	60610191	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:60610191A>G	uc001nqa.2	+	1	763	c.594A>G	c.(592-594)CCA>CCG	p.P198P	CCDC86_uc001nqb.2_5'UTR	NM_024098	NP_077003	Q9H6F5	CCD86_HUMAN	coiled-coil domain containing 86	198	Pro-rich.				interspecies interaction between organisms	nucleus					0						CGAGCAAGCCACCTCCAGCTG	0.637			NA											3	15					0	0	0.000602	0	0
SYT7	9066	broad.mit.edu	37	11	61295611	61295611	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:61295611C>G	uc001nrv.2	-	5	404	c.398G>C	c.(397-399)CGA>CCA	p.R133P	SYT7_uc009ynr.2_Missense_Mutation_p.R208P	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	133	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						CAGGTTCTCTCGGCTGCAACC	0.647			NA											40	71					0	0	0.00361	0	0
AHNAK	79026	broad.mit.edu	37	11	62287401	62287401	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:62287401C>T	uc001ntl.2	-	5	14788	c.14488G>A	c.(14488-14490)GCA>ACA	p.A4830T	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4830				A -> P (in Ref. 2; AAA69898).	nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTCAGTTTTGCGTCTGGACCT	0.488			NA											46	99					0	0	0.00361	0	0
LGALS12	85329	broad.mit.edu	37	11	63283785	63283785	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:63283785A>T	uc001nxa.2	+	9	1272	c.931A>T	c.(931-933)AGC>TGC	p.S311C	LGALS12_uc001nxb.2_Missense_Mutation_p.S302C|LGALS12_uc001nxc.2_Missense_Mutation_p.S312C|LGALS12_uc001nxd.2_Missense_Mutation_p.S250C|LGALS12_uc001nxe.2_Missense_Mutation_p.S241C|LGALS12_uc009yot.2_Missense_Mutation_p.S271C	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	311	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GGGGGCCACCAGCATGAACCA	0.622			NA											28	44					0	0	0.009535	0	0
PLCB3	5331	broad.mit.edu	37	11	64023072	64023072	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:64023072G>T	uc001nzb.2	+	7	581	c.581G>T	c.(580-582)GGC>GTC	p.G194V	PLCB3_uc009ypg.1_Missense_Mutation_p.G194V|PLCB3_uc009yph.1_Missense_Mutation_p.G127V|PLCB3_uc009ypi.2_Missense_Mutation_p.G194V	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	194					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						GAATCCTGTGGCCTCAAATTC	0.637			NA											50	83					2.48254e-18	3.04655e-18	0.00361	1	0
PLCB3	5331	broad.mit.edu	37	11	64033811	64033811	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:64033811C>G	uc001nzb.2	+	28	3291	c.3291C>G	c.(3289-3291)ATC>ATG	p.I1097M	PLCB3_uc009ypg.1_Missense_Mutation_p.I1097M|PLCB3_uc009yph.1_Missense_Mutation_p.I1030M|PLCB3_uc009ypi.2_Missense_Mutation_p.I1097M	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	1097				REKKELQKILDRKRHNSISEAKMRDKHKKEA -> SWPSWP RSVRSSGRGSPRRSAGACWARCRRG (in Ref. 2; CAA85776).	intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						TGCAGAAGATCCTGGACAGAA	0.587			NA											10	56					0	0	0.00245	0	0
CATSPER1	117144	broad.mit.edu	37	11	65788969	65788969	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:65788969G>C	uc001ogt.2	-	4	1827	c.1689C>G	c.(1687-1689)CTC>CTG	p.L563L		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	563	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CCACTGACCTGAGCCTCCGCA	0.617			NA											14	34					0	0	0.00499	0	0
RBM14	10432	broad.mit.edu	37	11	66392840	66392840	+	Missense_Mutation	SNP	A	A	G	rs144272368		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:66392840A>G	uc001oit.2	+	2	1632	c.1493A>G	c.(1492-1494)TAT>TGT	p.Y498C	RBM14_uc009yrh.2_Intron|RBM14_uc009yri.2_Intron|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	498	Ala-rich.				DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						ACTGGCTCCTATGGTGCCGCA	0.622			NA											14	46					0	0	0.004007	0	0
LRP5	4041	broad.mit.edu	37	11	68193529	68193529	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:68193529G>T	uc001ont.2	+	16	3586	c.3511G>T	c.(3511-3513)GAC>TAC	p.D1171Y	LRP5_uc009ysg.2_Missense_Mutation_p.D581Y	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1171	LDL-receptor class B 20.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CTACTGGATCGACCGCCAGCA	0.642			NA											52	124					3.7469e-33	4.90529e-33	0.00361	1	0
ANO1	55107	broad.mit.edu	37	11	69950235	69950235	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:69950235T>A	uc001opj.2	+	4	976	c.671T>A	c.(670-672)TTC>TAC	p.F224Y	ANO1_uc001opk.1_Missense_Mutation_p.F196Y|ANO1_uc001opl.1_RNA	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	224	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						TCCTATCCCTTCTCCCGGGAG	0.522			NA											7	13					0	0	0.004482	0	0
C2CD3	26005	broad.mit.edu	37	11	73801966	73801966	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:73801966C>A	uc001ouu.2	-	20	3760	c.3533G>T	c.(3532-3534)GGC>GTC	p.G1178V		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1178	C2 1.					centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GTACCTTAGGCCCACATCCAG	0.488			NA											12	26					1.5842e-08	1.75567e-08	0.001855	1	0
TYR	7299	broad.mit.edu	37	11	88911070	88911070	+	Translation_Start_Site	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:88911070C>A	uc001pcs.2	+	1	31	c.-51C>A	c.(-53--49)ATCTG>ATATG			NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor						eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	AAAGAGAAATCTGTGACTCCA	0.458			NA							Oculocutaneous_Albinism				5	15					0.000602214	0.000625938	0.000602	1	0
CNTN5	53942	broad.mit.edu	37	11	99690455	99690455	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:99690455C>G	uc001pga.2	+	4	575	c.236C>G	c.(235-237)CCC>CGC	p.P79R	CNTN5_uc009ywv.1_Missense_Mutation_p.P79R|CNTN5_uc001pfz.2_Missense_Mutation_p.P79R|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	79					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TATTATTCCCCCATCAATCTT	0.333			NA											6	12					0	0	0.001168	0	0
TRPC6	7225	broad.mit.edu	37	11	101347075	101347075	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:101347075C>A	uc001pgk.3	-	6	2126	c.1701G>T	c.(1699-1701)TTG>TTT	p.L567F	TRPC6_uc009ywy.2_Missense_Mutation_p.L451F|TRPC6_uc009ywz.1_Missense_Mutation_p.L512F	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	567	Extracellular (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		TTACTTTCGTCAAGTCCTTCA	0.363	Colon(166;1315 1927 11094 12848 34731)		NA											16	48					8.28177e-16	9.89773e-16	0.007413	1	0
DYNC2H1	79659	broad.mit.edu	37	11	103153800	103153800	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:103153800G>A	uc001pho.2	+	73	11020	c.10876G>A	c.(10876-10878)GTG>ATG	p.V3626M	DYNC2H1_uc001phn.1_Missense_Mutation_p.V3633M|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3626					cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AAGCTGGGCCGTGGCAACATT	0.353			NA											9	24					0	0	0.008291	0	0
SIK2	23235	broad.mit.edu	37	11	111592583	111592583	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:111592583C>T	uc001plt.2	+	13	2092	c.1974C>T	c.(1972-1974)GTC>GTT	p.V658V		NM_015191	NP_056006	Q9H0K1	SIK2_HUMAN	SNF1-like kinase 2	658					intracellular protein kinase cascade|regulation of insulin receptor signaling pathway	Golgi apparatus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|skin(1)	3						AGGAAAGCGTCTCCACTCTCC	0.567			NA											28	42					0	0	0.004289	0	0
PIH1D2	120379	broad.mit.edu	37	11	111941400	111941400	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:111941400G>C	uc001pmq.3	-	5	655	c.573C>G	c.(571-573)AGC>AGG	p.S191R	PIH1D2_uc009yyl.2_Missense_Mutation_p.S191R|PIH1D2_uc001pmp.3_Missense_Mutation_p.S191R|PIH1D2_uc010rws.1_Missense_Mutation_p.S191R	NM_138789	NP_620144	Q8WWB5	PIHD2_HUMAN	PIH1 domain containing 2 isoform 1	191										ovary(1)	1		all_cancers(61;1.09e-14)|all_epithelial(67;7.64e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.19e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;6.18e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0508)		TCATAGTACTGCTTCGTATCT	0.363			NA											4	75					0	0	0.001168	0	0
TTC12	54970	broad.mit.edu	37	11	113194080	113194080	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:113194080G>C	uc001pnu.2	+	3	234	c.129G>C	c.(127-129)AAG>AAC	p.K43N	TTC12_uc001pnv.2_Missense_Mutation_p.K43N|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_5'UTR	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	43							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		AGACAGAAAAGAGACTACTGC	0.433			NA											37	68					0	0	0.005524	0	0
APOA1	335	broad.mit.edu	37	11	116707841	116707841	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:116707841C>T	uc001ppu.1	-	3	155	c.76G>A	c.(76-78)GAA>AAA	p.E26K	APOA1_uc001ppv.1_Missense_Mutation_p.E26K	NM_000039	NP_000030	P02647	APOA1_HUMAN	apolipoprotein A-I preproprotein	26					Cdc42 protein signal transduction|cholesterol efflux|cholesterol homeostasis|cholesterol import|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|negative regulation of cytokine secretion involved in immune response|negative regulation of interleukin-1 beta secretion|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid efflux|platelet activation|platelet degranulation|positive regulation of cholesterol esterification|positive regulation of hydrolase activity|protein stabilization|reverse cholesterol transport	endocytic vesicle|endoplasmic reticulum lumen|plasma membrane|spherical high-density lipoprotein particle|stored secretory granule|very-low-density lipoprotein particle	apolipoprotein A-I receptor binding|beta-amyloid binding|cholesterol binding|cholesterol transporter activity|enzyme binding|high-density lipoprotein particle receptor binding|identical protein binding|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding				0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.59e-05)|all cancers(92;0.000162)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		TGGGGGGGTTCATCTTGCTGC	0.602			NA											21	74					0	0	0.010504	0	0
HYOU1	10525	broad.mit.edu	37	11	118926253	118926253	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:118926253C>G	uc001puu.2	-	4	409	c.216G>C	c.(214-216)GTG>GTC	p.V72V	HYOU1_uc001put.2_Silent_p.V37V|HYOU1_uc010ryu.1_Silent_p.V92V|HYOU1_uc010ryv.1_Intron|HYOU1_uc001pux.3_Silent_p.V72V|HYOU1_uc010ryw.1_RNA|HYOU1_uc001puw.1_Silent_p.V72V	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	72						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		CTTTCAGGGTCACGATCACCG	0.532			NA											20	81					0	0	0.003954	0	0
TRIM29	23650	broad.mit.edu	37	11	119989012	119989012	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:119989012C>A	uc001pwz.2	-	7	1670	c.1546G>T	c.(1546-1548)GTC>TTC	p.V516F	TRIM29_uc001pwx.2_RNA|TRIM29_uc001pwy.2_Missense_Mutation_p.V49F|TRIM29_uc010rzi.1_Missense_Mutation_p.V255F|TRIM29_uc010rzj.1_Missense_Mutation_p.V249F|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	516					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		TACTCCCAGACCCGGGAGGTG	0.602			NA											20	29					7.41877e-09	8.24843e-09	0.001882	1	0
TMEM225	338661	broad.mit.edu	37	11	123753962	123753962	+	Silent	SNP	A	A	G	rs148160664		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:123753962A>G	uc001pzi.2	-	4	769	c.561T>C	c.(559-561)TCT>TCC	p.S187S		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	187						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TATCTTCGATAGAATTCTCAG	0.433			NA											6	38					0	0	0.003163	0	0
OR8G2	26492	broad.mit.edu	37	11	124096005	124096006	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:124096005_124096006CC>AA	uc010saf.1	+	1	608_609	c.608_609CC>AA	c.(607-609)TCC>TAA	p.S203*		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	203						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CTCTCCTGCTCCAGCACCTACA	0.421			NA											41	78					0	0	0.004672	0	0
OR8B8	26493	broad.mit.edu	37	11	124310488	124310488	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:124310488C>T	uc010sal.1	-	1	494	c.494G>A	c.(493-495)GGT>GAT	p.G165D		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.G165R(1)		ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GAAGGTCACACCCATCATGCA	0.512			NA											11	35					0	0	0.008291	0	0
ST14	6768	broad.mit.edu	37	11	130064080	130064080	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr11:130064080C>T	uc001qfw.2	+	8	1105	c.912C>T	c.(910-912)ACC>ACT	p.T304T	ST14_uc010sca.1_Silent_p.T114T	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	304	Extracellular (Potential).|CUB 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	ACAACCTGACCTTCCACTCCT	0.577			NA											78	159					0	0	0.00361	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1910245	1910245	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:1910245C>T	uc001qjp.2	-	31	3063	c.2832G>A	c.(2830-2832)TCG>TCA	p.S944S	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc001qjo.2_Silent_p.S89S|CACNA2D4_uc001qjs.1_Silent_p.S11S|CACNA2D4_uc010sdw.1_Silent_p.S74S|CACNA2D4_uc009zdr.1_RNA	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	944	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		GGTGGTGACTCGAGGGTTTGC	0.607	Colon(2;101 179 21030 23310 28141)		NA									OREG0021569	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	84					0	0	0.003214	0	0
TPI1	7167	broad.mit.edu	37	12	6978853	6978853	+	Silent	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:6978853T>C	uc001qrk.2	+	5	497	c.459T>C	c.(457-459)GAT>GAC	p.D153D	TPI1_uc010sfo.1_Silent_p.D71D	NM_000365	NP_000356	P60174	TPIS_HUMAN	triosephosphate isomerase 1 isoform 1	153					fatty acid biosynthetic process|gluconeogenesis|glycolysis|pentose-phosphate shunt	cytosol	triose-phosphate isomerase activity				0						GCCCTGCAGATAACGTGAAGG	0.577			NA									OREG0021638	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	63	128					0	0	0.00361	0	0
LRRC23	10233	broad.mit.edu	37	12	7015087	7015087	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:7015087C>G	uc001qrt.3	+	3	597	c.205C>G	c.(205-207)CAT>GAT	p.H69D	LRRC23_uc001qrn.1_Missense_Mutation_p.H69D|LRRC23_uc009zfg.2_Intron|LRRC23_uc001qrp.2_Missense_Mutation_p.H69D|LRRC23_uc001qrq.2_Missense_Mutation_p.H69D|LRRC23_uc001qrr.2_Intron|LRRC23_uc001qrs.2_Intron|LRRC23_uc009zfh.2_Missense_Mutation_p.H69D	NM_001135217	NP_001128689	Q53EV4	LRC23_HUMAN	leucine rich repeat containing 23 isoform a	69										ovary(1)	1						TGGGCTGGCTCATGCTTATGT	0.542			NA											23	55					0	0	0.00632	0	0
ACSM4	341392	broad.mit.edu	37	12	7480967	7480967	+	Nonstop_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:7480967T>C	uc001qsx.1	+	13	1741	c.1741T>C	c.(1741-1743)TAG>CAG	p.*581Q		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	581					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GAGAGGAAGATAGTTTGATAA	0.348			NA											5	8					0	0	0.001168	0	0
C3AR1	719	broad.mit.edu	37	12	8211415	8211415	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:8211415G>C	uc001qtv.1	-	2	1459	c.1367C>G	c.(1366-1368)GCA>GGA	p.A456G		NM_004054	NP_004045	Q16581	C3AR_HUMAN	complement component 3a receptor 1	456	Cytoplasmic (Potential).				blood circulation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response	integral to plasma membrane	C3a anaphylatoxin receptor activity|complement component C3a receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)	1				Kidney(36;0.0893)		ACTGAAGGCTGCCTCCAGAAT	0.458			NA											28	44					0	0	0.008361	0	0
KLRD1	3824	broad.mit.edu	37	12	10462274	10462274	+	Silent	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:10462274A>T	uc001qxw.3	+	4	347	c.150A>T	c.(148-150)ATA>ATT	p.I50I	KLRD1_uc001qxx.3_Silent_p.I50I|KLRD1_uc001qxy.3_Silent_p.I19I|KLRD1_uc009zhh.2_Intron|KLRD1_uc009zhi.2_Silent_p.I50I|KLRD1_uc001qxz.3_Silent_p.I50I	NM_001114396	NP_001107868	Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D,	50	Extracellular (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity				0						GACCCAACATAGAACTCCAGA	0.333			NA											18	12					0	0	0.005443	0	0
PDE3A	5139	broad.mit.edu	37	12	20522876	20522876	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:20522876G>C	uc001reh.1	+	1	680	c.658G>C	c.(658-660)GCG>CCG	p.A220P		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	220	Helical; (Potential).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CTTGACTAGCGCGGTCAGGAC	0.657			NA											15	27					0	0	0.00499	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20885847	20885847	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:20885847C>T	uc001rej.3	+	11	1546	c.1191C>T	c.(1189-1191)CTC>CTT	p.L397L	SLCO1C1_uc010sii.1_Silent_p.L397L|SLCO1C1_uc010sij.1_Silent_p.L348L|SLCO1C1_uc009zip.2_Silent_p.L231L|SLCO1C1_uc001rei.2_Silent_p.L397L|SLCO1C1_uc010sik.1_Silent_p.L279L	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	397	Helical; Name=8; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TCTCAGGGCTCATCAACATTC	0.353			NA											24	17					0	0	0.007291	0	0
KIAA0528	9847	broad.mit.edu	37	12	22646262	22646262	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:22646262T>A	uc001rfq.2	-	11	1385	c.1157A>T	c.(1156-1158)GAA>GTA	p.E386V	KIAA0528_uc010sir.1_Missense_Mutation_p.E201V|KIAA0528_uc010sis.1_Missense_Mutation_p.E386V|KIAA0528_uc010sit.1_Missense_Mutation_p.E388V|KIAA0528_uc010siu.1_Missense_Mutation_p.E386V|KIAA0528_uc001rfr.2_Missense_Mutation_p.E377V|KIAA0528_uc009ziy.1_Missense_Mutation_p.E388V	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	386							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						ATCTCGAGTTTCTGGTTCATC	0.328			NA											34	45					0	0	0.005524	0	0
C12orf71	728858	broad.mit.edu	37	12	27234319	27234319	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:27234319C>T	uc001rhq.2	-	2	637	c.598G>A	c.(598-600)GAC>AAC	p.D200N		NM_001080406	NP_001073875	A8MTZ7	CL071_HUMAN	hypothetical protein LOC728858	200											0						GAAGGAGTGTCATCCTTCTCT	0.562			NA											38	34					0	0	0.006999	0	0
CNTN1	1272	broad.mit.edu	37	12	41353010	41353010	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:41353010C>T	uc001rmm.1	+	15	1891	c.1778C>T	c.(1777-1779)TCA>TTA	p.S593L	CNTN1_uc009zjy.1_Missense_Mutation_p.S593L|CNTN1_uc001rmn.1_Missense_Mutation_p.S582L|CNTN1_uc001rmo.2_Missense_Mutation_p.S593L	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	593	Ig-like C2-type 6.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GACAATTCTTCAGCTTCAGCT	0.383			NA											16	36					0	0	0.00499	0	0
ARID2	196528	broad.mit.edu	37	12	46245869	46245869	+	Silent	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:46245869A>T	uc001ros.1	+	15	3963	c.3963A>T	c.(3961-3963)CTA>CTT	p.L1321L	ARID2_uc001ror.2_Silent_p.L1321L|ARID2_uc009zkg.1_Silent_p.L777L|ARID2_uc009zkh.1_Silent_p.L948L|ARID2_uc001rou.1_Silent_p.L655L	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1321					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGTGCTCACTAATCAGTAATG	0.393			NA											15	57					0	0	0.010504	0	0
SMARCD1	6602	broad.mit.edu	37	12	50483734	50483734	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:50483734T>A	uc001rvx.3	+	7	1009	c.839T>A	c.(838-840)GTA>GAA	p.V280E	SMARCD1_uc001rvy.3_Missense_Mutation_p.V280E|SMARCD1_uc009zlp.2_Missense_Mutation_p.V239E	NM_003076	NP_003067	Q96GM5	SMRD1_HUMAN	SWI/SNF-related matrix-associated	280	Necessary for GR/NR3C1-mediated remodeling and transcription from chromatin; required for GR/NR3C1 interaction with the BRG1/SMARCA4 complex in vivo.|Interaction with SMARCC1 and SMARCC2.				chromatin-mediated maintenance of transcription|nervous system development|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	protein complex scaffold|transcription coactivator activity			ovary(1)	1						GACGTGAATGTACGGTGTACT	0.557			NA											25	56					0	0	0.002836	0	0
SLC4A8	9498	broad.mit.edu	37	12	51865142	51865142	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:51865142T>C	uc001rys.1	+	14	1908	c.1730T>C	c.(1729-1731)CTT>CCT	p.L577P	SLC4A8_uc010sni.1_Missense_Mutation_p.L524P|SLC4A8_uc001rym.2_Missense_Mutation_p.L524P|SLC4A8_uc001ryn.2_Missense_Mutation_p.L524P|SLC4A8_uc001ryo.2_Missense_Mutation_p.L524P|SLC4A8_uc010snj.1_Missense_Mutation_p.L604P|SLC4A8_uc001ryq.3_Missense_Mutation_p.L577P|SLC4A8_uc001ryr.2_Missense_Mutation_p.L577P|SLC4A8_uc010snk.1_Missense_Mutation_p.L524P	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	577	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TGTATTGTCCTTGTGGCAACT	0.438			NA											40	77					0	0	0.00623	0	0
SLC4A8	9498	broad.mit.edu	37	12	51865208	51865208	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:51865208C>T	uc001rys.1	+	14	1974	c.1796C>T	c.(1795-1797)TCC>TTC	p.S599F	SLC4A8_uc010sni.1_Missense_Mutation_p.S546F|SLC4A8_uc001rym.2_Missense_Mutation_p.S546F|SLC4A8_uc001ryn.2_Missense_Mutation_p.S546F|SLC4A8_uc001ryo.2_Missense_Mutation_p.S546F|SLC4A8_uc010snj.1_Missense_Mutation_p.S626F|SLC4A8_uc001ryq.3_Missense_Mutation_p.S599F|SLC4A8_uc001ryr.2_Missense_Mutation_p.S599F|SLC4A8_uc010snk.1_Missense_Mutation_p.S546F	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	599	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GCATTTGCCTCCCTAATTTGC	0.468			NA											24	83					0	0	0.004656	0	0
KRT75	9119	broad.mit.edu	37	12	52827669	52827670	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:52827669_52827670GG>TT	uc001saj.2	-	1	441_442	c.419_420CC>AA	c.(418-420)CCC>CAA	p.P140Q		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	140	Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GCTGGATGGTGGGGTCGATTTG	0.599			NA											42	113					0	0	0.004672	0	0
KRT3	3850	broad.mit.edu	37	12	53189278	53189278	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:53189278G>T	uc001say.2	-	1	615	c.549C>A	c.(547-549)CTC>CTA	p.L183L		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	183	Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						TCTCCACATTGAGGGGCTGCA	0.547			NA											19	35					5.35267e-07	5.78257e-07	0.007413	1	0
SP1	6667	broad.mit.edu	37	12	53776438	53776438	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:53776438T>C	uc001scw.2	+	3	804	c.707T>C	c.(706-708)GTC>GCC	p.V236A	SP1_uc010sog.1_Missense_Mutation_p.V229A	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	236	Transactivation domain A (Gln-rich).				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		CAGCAGGCTGTCCCCCTCCAA	0.488			NA											3	136					0	0	0.009096	0	0
MAP3K12	7786	broad.mit.edu	37	12	53875980	53875980	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:53875980C>G	uc001sdm.1	-	14	2324	c.2226G>C	c.(2224-2226)CTG>CTC	p.L742L	MAP3K12_uc001sdn.1_Silent_p.L775L	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	742					histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)|skin(1)	5						GGCGCATGTTCAGGCTCTGAG	0.498			NA									OREG0021873	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	64	126					0	0	0.00361	0	0
PPP1R1A	5502	broad.mit.edu	37	12	54975868	54975868	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:54975868C>T	uc001sgg.2	-	5	466	c.295G>A	c.(295-297)GAG>AAG	p.E99K		NM_006741	NP_006732	Q13522	PPR1A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	99					glycogen metabolic process|signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity				0						TCAGGTTCCTCTCCTTGCTGC	0.597			NA											10	32					0	0	0.000978	0	0
ANKRD52	283373	broad.mit.edu	37	12	56638527	56638527	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:56638527C>T	uc001skm.3	-	24	2721	c.2631G>A	c.(2629-2631)CTG>CTA	p.L877L		NM_173595	NP_775866	Q8NB46	ANR52_HUMAN	ankyrin repeat domain 52	877	ANK 25.						protein binding			ovary(2)	2						GATGCTGCAGCAGCATCCGGA	0.597			NA											20	56					0	0	0.002299	0	0
GLS2	27165	broad.mit.edu	37	12	56872853	56872853	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:56872853C>T	uc001slj.2	-	4	796	c.517G>A	c.(517-519)GAG>AAG	p.E173K	GLS2_uc009zos.2_RNA|GLS2_uc001slk.2_Intron|GLS2_uc009zot.2_Intron	NM_013267	NP_037399	Q9UI32	GLSL_HUMAN	glutaminase 2 precursor	173					cellular amino acid biosynthetic process|glutamate secretion|glutamine metabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity|protein binding			ovary(1)|central_nervous_system(1)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CCAGTGAGCTCTTTGACATCC	0.428			NA											50	97					0	0	0.00361	0	0
NAB2	4665	broad.mit.edu	37	12	57485106	57485106	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:57485106C>T	uc001smz.2	+	2	660	c.282C>T	c.(280-282)CTC>CTT	p.L94L		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	94	NCD1.				cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CCAAGCCCCTCCATGTCCGGC	0.622			NA											56	95					0	0	0.00361	0	0
LRP1	4035	broad.mit.edu	37	12	57559724	57559724	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:57559724C>G	uc001snd.2	+	16	3133	c.2667C>G	c.(2665-2667)CTC>CTG	p.L889L	LRP1_uc009zph.1_5'Flank|LRP1_uc009zpi.1_5'Flank	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	889	LDL-receptor class A 3.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCCCAGCCCTCTGCCGTGAGT	0.647			NA											23	42					0	0	0.007291	0	0
LRP1	4035	broad.mit.edu	37	12	57572344	57572344	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:57572344C>T	uc001snd.2	+	27	5030	c.4564C>T	c.(4564-4566)CCC>TCC	p.P1522S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1522	LDL-receptor class B 12.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CAACACCCAGCCCTTTGACCT	0.622			NA											55	128					0	0	0.00361	0	0
GRIP1	23426	broad.mit.edu	37	12	66765480	66765480	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:66765480C>T	uc001stk.2	-	22	3091	c.2850G>A	c.(2848-2850)CTG>CTA	p.L950L	GRIP1_uc010sta.1_Silent_p.L894L|GRIP1_uc001stj.2_Silent_p.L717L|GRIP1_uc001stl.1_Silent_p.L827L|GRIP1_uc001stm.2_Silent_p.L935L	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	1002					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		TGACCTTGTGCAGCTCCACAG	0.468			NA											30	80					0	0	0.008361	0	0
RAB21	23011	broad.mit.edu	37	12	72167776	72167776	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:72167776G>T	uc001swt.2	+	4	617	c.365G>T	c.(364-366)GGA>GTA	p.G122V		NM_014999	NP_055814	Q9UL25	RAB21_HUMAN	RAB21, member RAS oncogene family	122					protein transport|small GTPase mediated signal transduction	cleavage furrow|cytoplasmic vesicle membrane|early endosome membrane|endoplasmic reticulum membrane|Golgi membrane	GDP binding|GTP binding|GTPase activity|protein binding				0						AAAATGTTGGGAAATGAAATC	0.289			NA											18	56					2.39556e-15	2.84811e-15	0.00278	1	0
E2F7	144455	broad.mit.edu	37	12	77426850	77426850	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:77426850C>T	uc001sym.3	-	9	1598	c.1362G>A	c.(1360-1362)CAG>CAA	p.Q454Q	E2F7_uc009zse.2_5'Flank	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	454					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						CTTCTATTTTCTGTCTATAGA	0.373			NA											19	29					0	0	0.003954	0	0
GALNT4	8693	broad.mit.edu	37	12	89918168	89918168	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:89918168C>T	uc001tbd.2	-	1	368	c.159G>A	c.(157-159)CAG>CAA	p.Q53Q	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Silent_p.Q50Q|GALNT4_uc010suo.1_Intron	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	53	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						CCGTATTTTTCTGGAGGTCTG	0.562			NA									OREG0022018	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	12					0	0	0.008291	0	0
PLXNC1	10154	broad.mit.edu	37	12	94642146	94642146	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:94642146C>G	uc001tdc.2	+	14	2985	c.2736C>G	c.(2734-2736)ATC>ATG	p.I912M		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	912	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TTAAAGGCATCAAGACTGCAA	0.393			NA											33	45					0	0	0.007835	0	0
PAH	5053	broad.mit.edu	37	12	103238149	103238149	+	Missense_Mutation	SNP	C	C	T	rs62508679		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:103238149C>T	uc001tjq.1	-	11	1502	c.1030G>A	c.(1030-1032)GGT>AGT	p.G344S		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	344			G -> V (in PKU).|G -> R (in PKU).		catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	AGCCCAGCACCATATGCCTTT	0.423			NA											10	12					0	0	0.004007	0	0
STAB2	55576	broad.mit.edu	37	12	104056698	104056698	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:104056698G>A	uc001tjw.2	+	18	2130	c.1944G>A	c.(1942-1944)CTG>CTA	p.L648L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	648	Extracellular (Potential).|FAS1 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TTTACACACTGACAGGAGTTC	0.413			NA											56	46					0	0	0.00361	0	0
RPH3A	22895	broad.mit.edu	37	12	113316981	113316981	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:113316981A>G	uc010syl.1	+	14	1591	c.1229A>G	c.(1228-1230)CAG>CGG	p.Q410R	RPH3A_uc001ttz.2_Missense_Mutation_p.Q410R|RPH3A_uc001tty.2_Missense_Mutation_p.Q406R|RPH3A_uc009zwe.1_Missense_Mutation_p.Q406R|RPH3A_uc010sym.1_Missense_Mutation_p.Q361R|RPH3A_uc001tua.2_Missense_Mutation_p.Q170R	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	410	C2 1.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		AGCTCCCTGCAGTGCACCATC	0.547			NA											56	55					0	0	0.00361	0	0
MLXIP	22877	broad.mit.edu	37	12	122623364	122623364	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:122623364C>T	uc001ubq.2	+	15	2387	c.2387C>T	c.(2386-2388)TCC>TTC	p.S796F	MLXIP_uc001ubt.2_Missense_Mutation_p.S403F	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	796					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CATTTCAGCTCCTGCCAGCAG	0.602	Esophageal Squamous(105;787 1493 16200 18566 52466)		NA											10	9					0	0	0.000978	0	0
TCTN2	79867	broad.mit.edu	37	12	124192153	124192153	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:124192153G>T	uc001ufp.2	+	18	2115	c.1987G>T	c.(1987-1989)GAG>TAG	p.E663*	TCTN2_uc009zya.2_Nonsense_Mutation_p.E662*	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	663	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		TTTTTCAGGGGAGCTGCATTC	0.358			NA											18	22					3.99206e-14	4.6733e-14	0.007413	1	0
DNAH10	196385	broad.mit.edu	37	12	124272447	124272447	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr12:124272447G>A	uc001uft.3	+	10	1360	c.1335G>A	c.(1333-1335)GAG>GAA	p.E445E	DNAH10_uc010tav.1_5'Flank|DNAH10_uc010taw.1_5'Flank	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	445	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CCAAGATAGAGGCTTCGGGGA	0.562			NA											4	9					0	0	0.000602	0	0
CENPJ	55835	broad.mit.edu	37	13	25480420	25480420	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:25480420C>G	uc001upt.3	-	7	2009	c.1756G>C	c.(1756-1758)GAT>CAT	p.D586H	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA|CENPJ_uc001upu.2_5'Flank	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	586					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		GATATTTCATCAGCAGCTTGT	0.358			NA											10	9					0	0	0.008291	0	0
NBEA	26960	broad.mit.edu	37	13	35926326	35926326	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:35926326A>C	uc001uvb.2	+	38	6251	c.6045A>C	c.(6043-6045)AGA>AGC	p.R2015S	NBEA_uc010abi.2_Missense_Mutation_p.R671S	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2015						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CTGATAGAAGAGAGGAAGAAA	0.338			NA											7	7					0	0	0.006214	0	0
DIS3	22894	broad.mit.edu	37	13	73345239	73345239	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:73345239G>A	uc001vix.3	-	12	2024	c.1650C>T	c.(1648-1650)TCC>TCT	p.S550S	DIS3_uc001viy.3_Silent_p.S520S|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	550					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CACATTTTAAGGAACACAAGT	0.343			NA								Multiple Myeloma(4;0.011)			17	26					0	0	0.001882	0	0
EDNRB	1910	broad.mit.edu	37	13	78477365	78477365	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:78477365T>C	uc001vko.2	-	3	985	c.727A>G	c.(727-729)ATT>GTT	p.I243V	EDNRB_uc001vkq.1_Missense_Mutation_p.I243V|uc001vkn.1_Intron|EDNRB_uc010aez.1_Missense_Mutation_p.I243V|EDNRB_uc001vkp.1_Missense_Mutation_p.I326V	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	243	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	TCCATCGTAATTATATCAAAA	0.398			NA											51	100					0	0	0.00361	0	0
RNF219	79596	broad.mit.edu	37	13	79233246	79233246	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:79233246T>C	uc001vkw.1	-	1	69	c.10A>G	c.(10-12)ACC>GCC	p.T4A	RNF219_uc010afb.1_Intron|RNF219_uc010afc.2_Missense_Mutation_p.T4A	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	4							zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		TTCTGCACGGTCTGAGCCATG	0.597			NA											11	18					0	0	0.001855	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453917	84453917	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:84453917C>A	uc001vlk.2	-	1	2612	c.1726G>T	c.(1726-1728)GAG>TAG	p.E576*		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	576	LRRCT 2.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GGGCAGATCTCGTCATTGGAG	0.542			NA											10	34					6.40141e-05	6.73523e-05	0.000978	1	0
NALCN	259232	broad.mit.edu	37	13	101714406	101714406	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:101714406C>G	uc001vox.1	-	41	4858	c.4669G>C	c.(4669-4671)GAG>CAG	p.E1557Q		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1557	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCCAGCTGCTCCCTCGCCAGG	0.572			NA											28	57					0	0	0.00632	0	0
COL4A2	1284	broad.mit.edu	37	13	111160490	111160490	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:111160490G>T	uc001vqx.2	+	47	5092	c.4803G>T	c.(4801-4803)GCG>GCT	p.A1601A		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1601	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			TCGCCATCGCGGTCCACAGTC	0.602			NA											31	64					5.77227e-19	7.1219e-19	0.008361	1	0
NDRG2	57447	broad.mit.edu	37	14	21490336	21490336	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:21490336A>C	uc001vyy.2	-	6	379	c.229T>G	c.(229-231)TCT>GCT	p.S77A	NDRG2_uc010tll.1_Missense_Mutation_p.S73A|NDRG2_uc001vyt.2_5'UTR|NDRG2_uc001vyu.2_Missense_Mutation_p.S63A|NDRG2_uc001vyv.2_Missense_Mutation_p.S63A|NDRG2_uc001vyw.2_Missense_Mutation_p.S63A|NDRG2_uc001vzb.2_Intron|NDRG2_uc001vyx.2_Missense_Mutation_p.S77A|NDRG2_uc001vza.2_Missense_Mutation_p.S63A|NDRG2_uc001vyz.2_Missense_Mutation_p.S63A|NDRG2_uc001vzc.2_Missense_Mutation_p.S63A|NDRG2_uc001vze.2_Missense_Mutation_p.S77A|NDRG2_uc001vzd.2_Missense_Mutation_p.S77A|NDRG2_uc001vzg.2_Missense_Mutation_p.S63A|NDRG2_uc001vzf.2_Missense_Mutation_p.S63A|NDRG2_uc010aig.2_Missense_Mutation_p.S77A	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	77					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		TGGAAGCAAGATTTATCTAAA	0.502			NA											23	42					0	0	0.005443	0	0
TPPP2	122664	broad.mit.edu	37	14	21499323	21499323	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:21499323C>T	uc001vzh.2	+	3	514	c.326C>T	c.(325-327)ACT>ATT	p.T109I	NDRG2_uc010tll.1_Intron	NM_173846	NP_776245	P59282	TPPP2_HUMAN	tubulin polymerization-promoting protein family	109						cytoplasm					0	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		ACTGGCGCTACTGTGAGTGAC	0.522			NA											26	56					0	0	0.002445	0	0
Unknown	0	broad.mit.edu	37	14	22337432	22337432	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:22337432G>T	uc010tmf.1	+	2	305	c.226G>T	c.(226-228)GAA>TAA	p.E76*	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Nonsense_Mutation_p.E75*|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;												NA						AAATGTGGGCGAAAAGAAAGA	0.428			NA											54	106					7.41606e-26	9.42114e-26	0.00361	1	0
LRP10	26020	broad.mit.edu	37	14	23341964	23341964	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:23341964C>G	uc001whd.2	+	2	605	c.52C>G	c.(52-54)CCA>GCA	p.P18A	LRP10_uc001whe.2_5'Flank	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	18	Extracellular (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		TCTGGCCCATCCAGACCGGAT	0.547			NA									OREG0022588	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	34					0	0	0.005443	0	0
DHRS4L1	728635	broad.mit.edu	37	14	24517419	24517419	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:24517419G>C	uc010alc.2	+	6	472	c.472G>C	c.(472-474)GAA>CAA	p.E158Q	DHRS4L1_uc010tnu.1_RNA	NM_001082488	NP_001075957	P0CG22	DR4L1_HUMAN	dehydrogenase/reductase (SDR family) member 4	158							binding|oxidoreductase activity				0						AGTGGTGCCAGAAATGGAGAA	0.527			NA											8	28					0	0	0.008291	0	0
RNF31	55072	broad.mit.edu	37	14	24617533	24617533	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:24617533G>A	uc001wmn.1	+	3	655	c.406G>A	c.(406-408)GAA>AAA	p.E136K	PSME2_uc001wmj.2_5'Flank|PSME2_uc001wmk.2_5'Flank|RNF31_uc001wml.1_5'UTR|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_5'UTR|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	136	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		GAGCTTCCCCGAAGGGCAGGA	0.567			NA											13	37					0	0	0.001855	0	0
IPO4	79711	broad.mit.edu	37	14	24656911	24656911	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:24656911G>A	uc001wmv.1	-	5	501	c.370C>T	c.(370-372)CAG>TAG	p.Q124*	IPO4_uc001wmt.1_5'Flank|IPO4_uc001wmu.2_5'UTR|IPO4_uc001wmx.1_5'UTR|IPO4_uc001wmy.1_5'UTR|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Nonsense_Mutation_p.Q124*	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	124					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		GTACTGTGCTGAAGCAGCTGC	0.582			NA											31	77					0	0	0.00623	0	0
AKAP6	9472	broad.mit.edu	37	14	33015051	33015051	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:33015051G>T	uc001wrq.2	+	4	1362	c.1192G>T	c.(1192-1194)GAG>TAG	p.E398*	AKAP6_uc010aml.2_Nonsense_Mutation_p.E395*	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	398					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TTTTCTTAAAGAGGAAACTTT	0.428	Melanoma(49;821 1200 7288 13647 42351)		NA											23	64					5.35356e-11	6.10057e-11	0.00278	1	0
AKAP6	9472	broad.mit.edu	37	14	33290675	33290675	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:33290675G>A	uc001wrq.2	+	13	3826	c.3656G>A	c.(3655-3657)TGG>TAG	p.W1219*		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1219					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GCCCTGGAATGGGATGAAATG	0.403	Melanoma(49;821 1200 7288 13647 42351)		NA											25	63					0	0	0.005443	0	0
NPAS3	64067	broad.mit.edu	37	14	34247779	34247779	+	Splice_Site	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:34247779G>T	uc001wru.2	+	9	1217	c.1153_splice	c.e9+1	p.L385_splice	NPAS3_uc001wrs.2_Splice_Site_p.L372_splice|NPAS3_uc001wrt.2_Splice_Site_p.L353_splice|NPAS3_uc001wrv.2_Splice_Site_p.L355_splice	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CACTTGGACTGTAAGTACCTC	0.488			NA											20	46					2.39556e-15	2.84811e-15	0.00278	1	0
BAZ1A	11177	broad.mit.edu	37	14	35240752	35240752	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:35240752T>A	uc001wsk.2	-	21	3834	c.3266A>T	c.(3265-3267)CAG>CTG	p.Q1089L	BAZ1A_uc001wsl.2_Missense_Mutation_p.Q1057L	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1089					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		CTCAATGCCCTGCTCTATTTG	0.373			NA											39	111					0	0	0.00361	0	0
MDGA2	161357	broad.mit.edu	37	14	47351289	47351289	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:47351289A>T	uc001wwj.3	-	11	2363	c.2167T>A	c.(2167-2169)TTT>ATT	p.F723I	MDGA2_uc001wwh.3_5'UTR|MDGA2_uc001wwi.3_Missense_Mutation_p.F494I|MDGA2_uc010ani.2_Missense_Mutation_p.F283I	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	723					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CCTTCACCAAATTTGGTGAGA	0.289			NA											6	13					0	0	0.004482	0	0
ERO1L	30001	broad.mit.edu	37	14	53138391	53138391	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:53138391C>A	uc001wzv.2	-	6	691	c.465G>T	c.(463-465)TGG>TGT	p.W155C	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	155					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					CATGCTTGGTCCACTGAAGAA	0.274			NA											10	37					3.27435e-08	3.60547e-08	0.00245	1	0
C14orf101	54916	broad.mit.edu	37	14	57082682	57082682	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:57082682G>C	uc001xcm.2	+	8	1000	c.878G>C	c.(877-879)AGG>ACG	p.R293T	C14orf101_uc001xcj.2_RNA|C14orf101_uc010aot.1_Missense_Mutation_p.R293T|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_5'UTR|C14orf101_uc001xco.2_5'UTR	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	293						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		ACAAATATGAGGACCGAACTC	0.313			NA											42	79					0	0	0.00361	0	0
KIAA0586	9786	broad.mit.edu	37	14	58954712	58954712	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:58954712A>G	uc001xdv.3	+	22	3457	c.3184A>G	c.(3184-3186)ATT>GTT	p.I1062V	KIAA0586_uc010trr.1_Missense_Mutation_p.I1179V|KIAA0586_uc001xdt.3_Missense_Mutation_p.I1094V|KIAA0586_uc001xdu.3_Missense_Mutation_p.I1123V|KIAA0586_uc010trs.1_Missense_Mutation_p.I1053V|KIAA0586_uc010trt.1_Missense_Mutation_p.I998V|KIAA0586_uc010tru.1_Missense_Mutation_p.I998V	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	1062										ovary(1)	1						AGATATTTCCATTGATAAATT	0.473			NA											6	21					0	0	0.001984	0	0
RHOJ	57381	broad.mit.edu	37	14	63735881	63735882	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:63735881_63735882GG>TT	uc001xgb.1	+	2	675_676	c.232_233GG>TT	c.(232-234)GGA>TTA	p.G78L		NM_020663	NP_065714	Q9H4E5	RHOJ_HUMAN	ras homolog gene family, member J precursor	78	GTP (By similarity).				actin cytoskeleton organization|regulation of cell shape|regulation of small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.00326)|all cancers(60;0.031)|BRCA - Breast invasive adenocarcinoma(234;0.119)		TGACACCGCGGGACAGGTACAT	0.391			NA											18	62					0	0	0.004672	0	0
SYNE2	23224	broad.mit.edu	37	14	64447432	64447432	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:64447432G>C	uc001xgm.2	+	15	1860	c.1630G>C	c.(1630-1632)GAA>CAA	p.E544Q	SYNE2_uc001xgl.2_Missense_Mutation_p.E544Q	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	544	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AAAATGTGGAGAAATTTATAA	0.294			NA											5	16					0	0	0.001168	0	0
SPTB	6710	broad.mit.edu	37	14	65240051	65240051	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:65240051T>A	uc001xht.2	-	24	5119	c.5065A>T	c.(5065-5067)ATG>TTG	p.M1689L	SPTB_uc001xhr.2_Missense_Mutation_p.M1689L|SPTB_uc001xhs.2_Missense_Mutation_p.M1689L|SPTB_uc001xhu.2_Missense_Mutation_p.M1689L|SPTB_uc010aqi.2_Missense_Mutation_p.M350L	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1689	Spectrin 14.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		AGGTGGTACATGTTCTCCAGC	0.562			NA											39	82					0	0	0.00874	0	0
SPTB	6710	broad.mit.edu	37	14	65253478	65253478	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:65253478C>T	uc001xht.2	-	15	3259	c.3205G>A	c.(3205-3207)GAT>AAT	p.D1069N	SPTB_uc001xhr.2_Missense_Mutation_p.D1069N|SPTB_uc001xhs.2_Missense_Mutation_p.D1069N|SPTB_uc001xhu.2_Missense_Mutation_p.D1069N	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1069	Spectrin 8.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TCATCCAGATCCTGCAGGAAG	0.622			NA											25	44					0	0	0.008361	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68220796	68220796	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:68220796C>T	uc001xka.2	-	38	7259	c.7120G>A	c.(7120-7122)GCC>ACC	p.A2374T	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkb.2_Missense_Mutation_p.A220T	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	2374					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		ACCTTGCAGGCAACATCCATT	0.373			NA											49	160					0	0	0.00361	0	0
KIAA0247	9766	broad.mit.edu	37	14	70170113	70170113	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:70170113G>T	uc001xlk.2	+	3	439	c.123G>T	c.(121-123)GTG>GTT	p.V41V	KIAA0247_uc010aqz.2_Silent_p.V16V	NM_014734	NP_055549	Q92537	K0247_HUMAN	hypothetical protein LOC9766 precursor	41	Sushi.|Extracellular (Potential).					integral to membrane				ovary(3)	3				all cancers(60;0.00155)|BRCA - Breast invasive adenocarcinoma(234;0.0164)|OV - Ovarian serous cystadenocarcinoma(108;0.0196)		TCTTTGCAGTGTGCCCCCTAC	0.592			NA											37	114					5.73435e-26	7.29826e-26	0.00361	1	0
KIAA0247	9766	broad.mit.edu	37	14	70170115	70170115	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:70170115G>T	uc001xlk.2	+	3	441	c.125G>T	c.(124-126)TGC>TTC	p.C42F	KIAA0247_uc010aqz.2_Missense_Mutation_p.C17F	NM_014734	NP_055549	Q92537	K0247_HUMAN	hypothetical protein LOC9766 precursor	42	Sushi.|Extracellular (Potential).					integral to membrane				ovary(3)	3				all cancers(60;0.00155)|BRCA - Breast invasive adenocarcinoma(234;0.0164)|OV - Ovarian serous cystadenocarcinoma(108;0.0196)		TTTGCAGTGTGCCCCCTACCA	0.587			NA											37	110					2.9001e-28	3.7117e-28	0.00361	1	0
KIAA0317	9870	broad.mit.edu	37	14	75131573	75131573	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:75131573A>G	uc001xqb.2	-	18	2664	c.2159T>C	c.(2158-2160)GTA>GCA	p.V720A	KIAA0317_uc010tut.1_Missense_Mutation_p.V559A	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	720	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		ACCAACAACTACTGCATGGGC	0.418			NA											21	47					0	0	0.003954	0	0
C14orf118	55668	broad.mit.edu	37	14	76638254	76638254	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:76638254C>T	uc001xsh.2	+	4	882	c.796C>T	c.(796-798)CTG>TTG	p.L266L	C14orf118_uc001xsi.2_Silent_p.L266L|C14orf118_uc001xsj.1_Silent_p.L266L|C14orf118_uc001xsk.1_Silent_p.L266L|C14orf118_uc001xsl.2_RNA	NM_017926	NP_060396	Q9NWQ4	CN118_HUMAN	hypothetical protein LOC55668 isoform 1	266										ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.0172)		CCCTAATCTTCTGCCCAAGTG	0.413			NA											50	104					0	0	0.00361	0	0
C14orf145	145508	broad.mit.edu	37	14	81209499	81209499	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:81209499T>A	uc001xux.2	-	18	2897	c.2726A>T	c.(2725-2727)AAG>ATG	p.K909M	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	909	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		CTCAGATTCCTTGTTTTCAGT	0.433			NA											32	78					0	0	0.004878	0	0
KCNK13	56659	broad.mit.edu	37	14	90650453	90650453	+	Splice_Site	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:90650453A>G	uc001xye.1	+	2	777	c.335_splice	c.e2-2	p.G112_splice		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13							integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				TCTCTCCTGCAGGGTTTGGGA	0.458			NA											24	55					0	0	0.004656	0	0
DICER1	23405	broad.mit.edu	37	14	95562743	95562743	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:95562743G>A	uc001ydw.2	-	24	4696	c.4514C>T	c.(4513-4515)TCT>TTT	p.S1505F	DICER1_uc010avh.1_Missense_Mutation_p.S403F|DICER1_uc001ydv.2_Missense_Mutation_p.S1495F|DICER1_uc001ydx.2_Missense_Mutation_p.S1505F|DICER1_uc001ydy.1_Missense_Mutation_p.S357F	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1505					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TGCATCCCAAGAGCTGTAGTC	0.408			NA	Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				20	44					0	0	0.008871	0	0
TCL1A	8115	broad.mit.edu	37	14	96180344	96180345	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:96180344_96180345GG>TT	uc001yfc.3	-	1	189_190	c.59_60CC>AA	c.(58-60)GCC>GAA	p.A20E	uc001yfd.1_5'Flank|TCL1A_uc001yfb.3_Missense_Mutation_p.A20E	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	20					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		ACTTCTCCCAGGCCCACAGGCG	0.653	Ovarian(96;1068 2019 35393 39316)		NA	T	TRA@	T-CLL								46	89					0	0	0.004672	0	0
OR4N4	283694	broad.mit.edu	37	15	22332432	22332432	+	Translation_Start_Site	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:22332432C>T	uc001yuc.1	+	3	239	c.-742C>T	c.(-744--740)AACGT>AATGT		LOC727924_uc001ytz.1_Intron|LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		AAGATTCTAACGTGACAGAAC	0.328			NA											4	39					0	0	0.009096	0	0
HERC2	8924	broad.mit.edu	37	15	28369251	28369251	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:28369251C>A	uc001zbj.2	-	85	13226	c.13120G>T	c.(13120-13122)GAC>TAC	p.D4374Y		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4374					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCAGTTTCGTCGAGCGAGCCT	0.562			NA											31	68					1.99505e-19	2.47936e-19	0.002445	1	0
RYR3	6263	broad.mit.edu	37	15	33878235	33878235	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:33878235G>T	uc001zhi.2	+	16	1776	c.1706G>T	c.(1705-1707)AGC>ATC	p.S569I	RYR3_uc010bar.2_Missense_Mutation_p.S569I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	569	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTAACTGAAAGCCCAGAAGCC	0.448			NA											28	45					3.93418e-24	4.96112e-24	0.004289	1	0
MFAP1	4236	broad.mit.edu	37	15	44106739	44106739	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:44106739C>T	uc001zth.1	-	4	761	c.577G>A	c.(577-579)GAT>AAT	p.D193N		NM_005926	NP_005917	P55081	MFAP1_HUMAN	microfibrillar-associated protein 1	193						microfibril				skin(1)	1		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.33e-07)		TCCATCTCATCTTCACTGTCT	0.448			NA											71	128					0	0	0.00361	0	0
PRTG	283659	broad.mit.edu	37	15	55964742	55964742	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:55964742T>A	uc002adg.2	-	11	1990	c.1942A>T	c.(1942-1944)ATT>TTT	p.I648F	PRTG_uc002adh.2_Missense_Mutation_p.I150F	NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	648	Fibronectin type-III 3.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TAGCCCTGAATAGCAGCTGTG	0.488			NA											17	41					0	0	0.008871	0	0
SLTM	79811	broad.mit.edu	37	15	59193471	59193471	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:59193471C>A	uc002afp.2	-	6	665	c.577G>T	c.(577-579)GAA>TAA	p.E193*	SLTM_uc002afo.2_Nonsense_Mutation_p.E193*|SLTM_uc002afq.2_5'UTR|SLTM_uc010bgd.2_5'UTR|SLTM_uc002afr.1_Nonsense_Mutation_p.E111*	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	193	Glu-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						TTCTCATTTTCTTCTTCCTCA	0.254			NA											21	38					7.68411e-24	9.6544e-24	0.008361	1	0
PIF1	80119	broad.mit.edu	37	15	65108962	65108962	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:65108962G>T	uc002ant.2	-	12	1743	c.1677C>A	c.(1675-1677)GGC>GGA	p.G559G	PIF1_uc002anr.2_Silent_p.G107G|PIF1_uc002ans.2_Silent_p.G250G|PIF1_uc010uiq.1_Silent_p.G559G	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	559	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						CCAGGGTCATGCCCTGGGGGA	0.617			NA											13	34					0.00136819	0.0014178	0.001368	1	0
PDCD7	10081	broad.mit.edu	37	15	65411716	65411716	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:65411716G>A	uc002aol.2	-	4	1387	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I		NM_005707	NP_005698	Q8N8D1	PDCD7_HUMAN	programmed cell death 7	444					apoptosis|induction of apoptosis|response to glucocorticoid stimulus	U12-type spliceosomal complex					0						CCTCTGACCTGATCTGGATGA	0.473			NA											12	24					0	0	0.00245	0	0
ADPGK	83440	broad.mit.edu	37	15	73048727	73048727	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:73048727G>A	uc002avg.3	-	5	799	c.705C>T	c.(703-705)CTC>CTT	p.L235L	ADPGK_uc002ave.3_5'UTR|ADPGK_uc010ukw.1_Silent_p.L177L|ADPGK_uc002avf.3_Silent_p.L235L|ADPGK_uc002avi.3_Silent_p.L113L|ADPGK_uc002avh.3_5'UTR	NM_031284	NP_112574	Q9BRR6	ADPGK_HUMAN	ADP-dependent glucokinase	235	ADPK.				glycolysis	extracellular region	ADP-specific glucokinase activity|metal ion binding				0						CCCCGTTGGAGAGGTCGTGAG	0.532			NA											40	70					0	0	0.00361	0	0
C15orf60	283677	broad.mit.edu	37	15	73852120	73852120	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:73852120C>T	uc002avq.2	+	6	692	c.664C>T	c.(664-666)CAT>TAT	p.H222Y	C15orf60_uc010bjb.2_Missense_Mutation_p.H194Y	NM_001042367	NP_001035826	Q7Z4M0	CO060_HUMAN	hypothetical protein LOC283677	222										pancreas(1)	1						GGAGCTGCCCCATGTCTATGA	0.468			NA											27	61					0	0	0.005443	0	0
C15orf39	56905	broad.mit.edu	37	15	75500696	75500696	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:75500696A>G	uc002azp.3	+	2	2627	c.2307A>G	c.(2305-2307)GGA>GGG	p.G769G	C15orf39_uc002azq.3_Silent_p.G769G|C15orf39_uc002azr.3_Silent_p.G167G	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	769											0						ATTTTACAGGACTACATGCGT	0.393			NA											2	7					0	0	0.004672	0	0
AP3B2	8120	broad.mit.edu	37	15	83349890	83349890	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:83349890C>G	uc010uoh.1	-	6	739	c.562G>C	c.(562-564)GAG>CAG	p.E188Q	AP3B2_uc010uoi.1_Missense_Mutation_p.E188Q|AP3B2_uc010uoj.1_Missense_Mutation_p.E156Q|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	188					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			AGAAGCTTCTCAATGACTTCT	0.582			NA											7	17					0	0	0.00308	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84527563	84527563	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:84527563G>A	uc002bjz.3	+	8	997	c.773G>A	c.(772-774)AGA>AAA	p.R258K	ADAMTSL3_uc002bjy.1_Missense_Mutation_p.R258K|ADAMTSL3_uc010bmt.1_Missense_Mutation_p.R258K|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.R258K	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	258						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CGAAGTGTGAGAATTACAGTG	0.348			NA											33	71					0	0	0.006999	0	0
AEN	64782	broad.mit.edu	37	15	89169692	89169692	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:89169692G>C	uc002bmt.2	+	2	403	c.252G>C	c.(250-252)CTG>CTC	p.L84L	AEN_uc010bnl.2_Silent_p.L84L|AEN_uc010bnm.1_Silent_p.L84L	NM_022767	NP_073604	Q8WTP8	AEN_HUMAN	interferon stimulated exonuclease gene	84					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|response to ionizing radiation	nucleolus|nucleoplasm	exonuclease activity|nucleic acid binding				0						AGCAGTGTCTGAGGGCTGGAT	0.637			NA											6	26					0	0	0.001168	0	0
MCTP2	55784	broad.mit.edu	37	15	95001379	95001379	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:95001379A>G	uc002btj.2	+	19	2329	c.2264A>G	c.(2263-2265)AAG>AGG	p.K755R	MCTP2_uc010boj.2_Missense_Mutation_p.K484R|MCTP2_uc010bok.2_Missense_Mutation_p.K700R|MCTP2_uc002btl.2_Missense_Mutation_p.K343R	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	755					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TCTGAGAAAAAGGGGTTGATT	0.294			NA											3	45					0	0	0.004672	0	0
PDIA2	64714	broad.mit.edu	37	16	335387	335387	+	Silent	SNP	C	C	A	rs139827174	by1000genomes	TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:335387C>A	uc002cgn.1	+	11	1979	c.871C>A	c.(871-873)CGG>AGG	p.R291R	PDIA2_uc010bqt.1_Silent_p.R136R|PDIA2_uc002cgo.1_Silent_p.R291R	NM_006849	NP_006840	Q13087	PDIA2_HUMAN	protein disulfide isomerase A2 precursor	291					apoptosis|cell redox homeostasis|glycerol ether metabolic process|protein folding|protein retention in ER lumen|response to hypoxia	endoplasmic reticulum lumen	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity|steroid binding			central_nervous_system(1)|skin(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				GGCTGCGCACCGGGAGCTCCT	0.667			NA											22	27					2.89027e-11	3.30454e-11	0.002299	1	0
SSTR5	6755	broad.mit.edu	37	16	1129519	1129519	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:1129519C>T	uc002ckq.2	+	1	739	c.651C>T	c.(649-651)ATC>ATT	p.I217I	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	217	Helical; Name=5; (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	TGCTGGTCATCTGCCTGTGCT	0.697			NA											13	45					0	0	0.00245	0	0
PTX4	390667	broad.mit.edu	37	16	1536191	1536191	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:1536191G>A	uc010uvf.1	-	3	1171	c.1171C>T	c.(1171-1173)CCC>TCC	p.P391S		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	396	Pentaxin.					extracellular region	metal ion binding				0						CCTCCGGGGGGGATCTCATAG	0.657			NA											14	57					0	0	0.004007	0	0
KCTD5	54442	broad.mit.edu	37	16	2752431	2752431	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:2752431G>T	uc002crd.2	+	5	682	c.627G>T	c.(625-627)CTG>CTT	p.L209L		NM_018992	NP_061865	Q9NXV2	KCTD5_HUMAN	potassium channel tetramerisation domain	209					interspecies interaction between organisms	cytosol|nucleus|voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity				0						CCAAGGAGCTGCACAACACCC	0.612	Ovarian(56;981 1456 4301 50892)		NA											23	90					4.87955e-14	5.69281e-14	0.005443	1	0
C16orf90	646174	broad.mit.edu	37	16	3544590	3544590	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:3544590G>T	uc002cvi.2	-	2	334	c.334C>A	c.(334-336)CCA>ACA	p.P112T		NM_001080524	NP_001073993	A8MZG2	CP090_HUMAN	hypothetical protein LOC646174	102											0						CTGTTACGTGGGCCCAGAGTC	0.672			NA											48	49					8.52622e-23	1.06733e-22	0.00361	1	0
C16orf68	79091	broad.mit.edu	37	16	8722634	8722634	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:8722634G>A	uc002cyz.2	+	3	457	c.181G>A	c.(181-183)GAT>AAT	p.D61N	C16orf68_uc002cza.2_Missense_Mutation_p.D61N	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	61							methyltransferase activity				0						CTCTTGGACAGATTCAGGAGC	0.488			NA											21	59					0	0	0.00278	0	0
ERCC4	2072	broad.mit.edu	37	16	14026137	14026137	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:14026137G>T	uc002dce.2	+	6	1106	c.1097G>T	c.(1096-1098)GGG>GTG	p.G366V	ERCC4_uc010bva.2_Missense_Mutation_p.G366V|ERCC4_uc010uyz.1_5'UTR	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	366					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						ATTAAAGAAGGGGAAGGTATC	0.323			NA	Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				33	37					3.33393e-15	3.95005e-15	0.004878	1	0
NOMO2	283820	broad.mit.edu	37	16	18544400	18544400	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:18544400G>C	uc002dfe.2	-	12	1394	c.1322C>G	c.(1321-1323)TCT>TGT	p.S441C	NOMO2_uc002dff.2_Missense_Mutation_p.S441C|NOMO2_uc010bvx.2_Missense_Mutation_p.S274C	NM_001004060	NP_001004060	Q5JPE7	NOMO2_HUMAN	nodal modulator 2 isoform 1	441	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			skin(1)	1						GGTGACCAAAGACTTGTCCTT	0.413			NA											33	114					0	0	0.003214	0	0
SMG1	23049	broad.mit.edu	37	16	18826800	18826800	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:18826800G>T	uc002dfm.2	-	59	10839	c.10476C>A	c.(10474-10476)ATC>ATA	p.I3492I	SMG1_uc010bwb.2_Silent_p.I3352I|SMG1_uc010bwa.2_Silent_p.I2223I	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3492					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						AGGTGGGAGTGATTTCCTGGA	0.373			NA											6	110					3.59834e-05	3.79763e-05	0.001168	1	0
GPRC5B	51704	broad.mit.edu	37	16	19883904	19883904	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:19883904C>G	uc002dgt.2	-	2	372	c.264G>C	c.(262-264)GAG>GAC	p.E88D	GPRC5B_uc010vav.1_Missense_Mutation_p.E114D	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	88	Cytoplasmic (Potential).									lung(1)|breast(1)|skin(1)	3						GGCTCTTCTTCTCCTTCTCCT	0.622			NA											10	55					0	0	0.001368	0	0
ACSM5	54988	broad.mit.edu	37	16	20435296	20435296	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:20435296G>T	uc002dhe.2	+	6	973	c.826G>T	c.(826-828)GTG>TTG	p.V276L		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	276					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CACTGGCTGGGTGAAGGCAGC	0.502			NA											88	91					3.01496e-42	3.96979e-42	0.00361	1	0
DNAH3	55567	broad.mit.edu	37	16	21139082	21139082	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:21139082C>A	uc010vbe.1	-	8	1134	c.1134G>T	c.(1132-1134)TTG>TTT	p.L378F	DNAH3_uc002die.2_Missense_Mutation_p.L349F	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	378	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCTGCAGAGGCAATTTTCCCG	0.473			NA											92	107					3.01496e-42	3.96979e-42	0.00361	1	0
CACNG3	10368	broad.mit.edu	37	16	24373034	24373034	+	Silent	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:24373034C>A	uc002dmf.2	+	4	1998	c.798C>A	c.(796-798)ACC>ACA	p.T266T		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	266					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CGATGTTCACCCTCTCCCGGG	0.577			NA											80	99					1.22797e-34	1.61068e-34	0.00361	1	0
LCMT1	51451	broad.mit.edu	37	16	25175941	25175941	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:25175941G>C	uc002dnx.1	+	7	750	c.592G>C	c.(592-594)GAA>CAA	p.E198Q	LCMT1_uc002dny.1_Missense_Mutation_p.E143Q|LCMT1_uc002dnz.1_Missense_Mutation_p.E98Q|LCMT1_uc002doa.1_Missense_Mutation_p.E43Q	NM_016309	NP_057393	Q9UIC8	LCMT1_HUMAN	leucine carboxyl methyltransferase 1 isoform a	198		S-adenosyl-L-methionine; via carbonyl oxygen.					protein binding|protein C-terminal carboxyl O-methyltransferase activity|S-adenosylmethionine-dependent methyltransferase activity				0				GBM - Glioblastoma multiforme(48;0.0336)	L-Leucine(DB00149)	CCTGATAGCTGAATGTGTGCT	0.423	Colon(200;565 2072 24396 47922 50898)		NA											43	44					0	0	0.002522	0	0
KIAA0556	23247	broad.mit.edu	37	16	27765513	27765513	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:27765513C>T	uc002dow.2	+	18	3596	c.3572C>T	c.(3571-3573)CCA>CTA	p.P1191L		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1191										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CTAGAGCTCCCATCCAGTTCC	0.572			NA											76	78					0	0	0.00361	0	0
ZNF768	79724	broad.mit.edu	37	16	30537139	30537139	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:30537139C>A	uc002dyk.3	-	2	498	c.322G>T	c.(322-324)GAT>TAT	p.D108Y	ZNF768_uc010vex.1_Missense_Mutation_p.D77Y|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Missense_Mutation_p.D77Y	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	108	Pro-rich.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						CTCTGAGAATCTGATTCAGGG	0.597			NA											19	67					6.21321e-17	7.50398e-17	0.00278	1	0
ITGAM	3684	broad.mit.edu	37	16	31340616	31340616	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:31340616C>T	uc002ebq.2	+	24	2958	c.2860C>T	c.(2860-2862)CAA>TAA	p.Q954*	ITGAM_uc002ebr.2_Nonsense_Mutation_p.Q955*|ITGAM_uc010can.2_Nonsense_Mutation_p.Q360*	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	954	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CATGCAGCATCAATATCAGGT	0.517			NA											20	13					0	0	0.003954	0	0
SALL1	6299	broad.mit.edu	37	16	51175993	51175993	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:51175993C>A	uc010vgs.1	-	2	171	c.140G>T	c.(139-141)CGG>CTG	p.R47L	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	47					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGCACAGCACCGGCCACAGAC	0.443	GBM(103;1352 1446 1855 4775 8890)		NA											55	53					8.83742e-36	1.16139e-35	0.00361	1	0
ADAMTS18	170692	broad.mit.edu	37	16	77389862	77389862	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:77389862G>A	uc002ffc.3	-	9	1854	c.1435C>T	c.(1435-1437)CGC>TGC	p.R479C	ADAMTS18_uc010chc.1_Missense_Mutation_p.R67C|ADAMTS18_uc002ffe.1_Missense_Mutation_p.R175C|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	479	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AGATACTGGCGGCTGCAGGAA	0.488			NA											29	54					0	0	0.007291	0	0
BCMO1	53630	broad.mit.edu	37	16	81272546	81272546	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:81272546A>G	uc002fgn.1	+	1	251	c.33A>G	c.(31-33)GAA>GAG	p.E11E	BCMO1_uc002fgm.1_Silent_p.E11E|BCMO1_uc010vnp.1_5'UTR	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	11					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						ATAGGAAAGAACAGCTGGAGC	0.398			NA											22	56					0	0	0.002096	0	0
ANKRD11	29123	broad.mit.edu	37	16	89351075	89351075	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:89351075C>T	uc002fmx.1	-	9	2336	c.1875G>A	c.(1873-1875)GAG>GAA	p.E625E	ANKRD11_uc002fmy.1_Silent_p.E625E|ANKRD11_uc002fnc.1_Silent_p.E625E|ANKRD11_uc002fnb.1_Silent_p.E582E	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	625	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		CAACTTTCCCCTCCTTGTCCA	0.498			NA											27	71					0	0	0.005443	0	0
PRDM7	11105	broad.mit.edu	37	16	90126912	90126912	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr16:90126912G>T	uc010cje.2	-	9	1090	c.1070C>A	c.(1069-1071)TCT>TAT	p.S357Y	PRDM7_uc002fqo.2_Intron|PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjg.1_Missense_Mutation_p.S151Y	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	357	SET.			S -> Y (in Ref. 2; AAF78084).		chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CTCATCCCCAGACCAGACCAG	0.532			NA											4	93					0.00909568	0.00929901	0.009096	1	0
TRPV1	7442	broad.mit.edu	37	17	3477008	3477008	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:3477008G>A	uc010vrr.1	-	12	2549	c.2022C>T	c.(2020-2022)CTC>CTT	p.L674L	TRPV1_uc010vro.1_Silent_p.L685L|TRPV1_uc010vrp.1_Silent_p.L614L|TRPV1_uc010vrq.1_Silent_p.L672L|TRPV1_uc010vrs.1_Silent_p.L674L|TRPV1_uc010vrt.1_Silent_p.L674L|TRPV1_uc010vru.1_Silent_p.L674L	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	674	Helical; (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	TGTTGAGCAGGAGGATGTAGG	0.532	Melanoma(38;962 1762 15789)		NA											21	21					0	0	0.00278	0	0
FBXO39	162517	broad.mit.edu	37	17	6683381	6683381	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:6683381G>T	uc010vtg.1	+	2	314	c.194G>T	c.(193-195)GGG>GTG	p.G65V		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	65										ovary(1)|skin(1)	2						ACCTTCAGCGGGAGACCTTCC	0.498			NA											42	35					1.32136e-16	1.58748e-16	0.00874	1	0
TP53	7157	broad.mit.edu	37	17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:7578235T>C	uc002gim.2	-	6	808	c.614A>G	c.(613-615)TAT>TGT	p.Y205C	TP53_uc002gig.1_Missense_Mutation_p.Y205C|TP53_uc002gih.2_Missense_Mutation_p.Y205C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y73C|TP53_uc010cng.1_Missense_Mutation_p.Y73C|TP53_uc002gii.1_Missense_Mutation_p.Y73C|TP53_uc010cnh.1_Missense_Mutation_p.Y205C|TP53_uc010cni.1_Missense_Mutation_p.Y205C|TP53_uc002gij.2_Missense_Mutation_p.Y205C|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.Y112C|TP53_uc002gio.2_Missense_Mutation_p.Y73C|TP53_uc010vug.1_Missense_Mutation_p.Y166C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	205	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		Y -> N (in sporadic cancers; somatic mutation).|Y -> D (in sporadic cancers; somatic mutation).|Y -> F (in sporadic cancers; somatic mutation).|Y -> S (in sporadic cancers; somatic mutation).|Y -> H (in sporadic cancers; somatic mutation).|Y -> C (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Y205C(55)|p.Y205D(13)|p.Y205S(11)|p.Y205F(8)|p.0?(7)|p.Y205H(5)|p.Y205*(4)|p.Y205N(2)|p.K164_P219del(1)|p.Y205fs*42(1)|p.Y112C(1)|p.Y205fs*43(1)|p.E204fs*39(1)|p.Y73C(1)|p.E204_N210delEYLDDRN(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GTCATCCAAATACTCCACACG	0.542	Pancreas(47;798 1329 9957 10801)		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			14	26					0	0	0.003163	0	0
ALOX12B	242	broad.mit.edu	37	17	7977019	7977019	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:7977019T>C	uc002gjy.1	-	13	1972	c.1711A>G	c.(1711-1713)ATC>GTC	p.I571V		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	571	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						CAGGTGTAGATGACTATAGTG	0.483			NA								Multiple Myeloma(8;0.094)	OREG0024152	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	24					0	0	0.00333	0	0
MYH2	4620	broad.mit.edu	37	17	10428230	10428230	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:10428230G>C	uc010coi.2	-	34	4943	c.4815C>G	c.(4813-4815)AGC>AGG	p.S1605R	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.S1605R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1605	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CATCCAGCGTGCTCTGCATGG	0.453			NA											47	47					0	0	0.00361	0	0
MYO15A	51168	broad.mit.edu	37	17	18023816	18023816	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:18023816C>T	uc010vxh.1	+	2	2040	c.1702C>T	c.(1702-1704)CCT>TCT	p.P568S		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	568	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CGTGCCTCGCCCTGCCACCTC	0.746			NA											7	6					0	0	0.001984	0	0
GRAP	10750	broad.mit.edu	37	17	18927649	18927649	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:18927649C>T	uc002guy.2	-	4	444	c.347G>A	c.(346-348)GGG>GAG	p.G116E		NM_006613	NP_006604	Q13588	GRAP_HUMAN	GRB2-related adaptor protein	116	SH2.				cell-cell signaling|Ras protein signal transduction	cytoplasm	SH3/SH2 adaptor activity				0	all_cancers(12;0.0183)					GAAGTACTTCCCCGAGGCCTC	0.617			NA											11	18					0	0	0.000978	0	0
ALDH3A1	218	broad.mit.edu	37	17	19645475	19645475	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:19645475G>C	uc010cqu.2	-	4	861	c.531C>G	c.(529-531)CTC>CTG	p.L177L	ALDH3A1_uc010vzd.1_Silent_p.L177L|ALDH3A1_uc002gwj.2_Silent_p.L177L|ALDH3A1_uc010cqv.2_Silent_p.L177L|ALDH3A1_uc002gwk.2_Silent_p.L294L|ALDH3A1_uc002gwl.1_Silent_p.L104L	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	177					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	ACCTCTCCTTGAGCAGCTCCG	0.597			NA											31	79					0	0	0.005524	0	0
ULK2	9706	broad.mit.edu	37	17	19687055	19687055	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:19687055G>A	uc002gwm.3	-	22	2924	c.2415C>T	c.(2413-2415)CTC>CTT	p.L805L	ULK2_uc002gwn.2_Silent_p.L805L	NM_001142610	NP_001136082	Q8IYT8	ULK2_HUMAN	unc-51-like kinase 2	805					signal transduction		ATP binding|protein binding|protein serine/threonine kinase activity			skin(2)|large_intestine(1)|stomach(1)	4	all_cancers(12;4.97e-05)|all_epithelial(12;0.00362)|Breast(13;0.186)					CAAAGGTGATGAGCCCCTCTA	0.552			NA											85	46					0	0	0.00361	0	0
AMAC1	146861	broad.mit.edu	37	17	33520613	33520613	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:33520613G>T	uc002hjd.2	-	1	800	c.714C>A	c.(712-714)CTC>CTA	p.L238L		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	238	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		GCAGCACAAAGAGGCCTGGCA	0.612			NA											26	67					2.12542e-12	2.4546e-12	0.00632	1	0
AMAC1	146861	broad.mit.edu	37	17	33521035	33521035	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:33521035G>C	uc002hjd.2	-	1	378	c.292C>G	c.(292-294)CCT>GCT	p.P98A		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	98	DUF6 1.					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CGGATGTCAGGAGTTCCCAGA	0.602			NA											64	123					0	0	0.00361	0	0
MYO19	80179	broad.mit.edu	37	17	34883390	34883390	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:34883390G>C	uc010wcy.1	-	6	1284	c.292C>G	c.(292-294)CAG>GAG	p.Q98E	MYO19_uc002hmw.2_Missense_Mutation_p.Q98E|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA|MYO19_uc010wda.1_Intron|MYO19_uc002hmx.2_Missense_Mutation_p.Q98E	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	98	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		ACCTGGGGCTGAGGCGCAGCA	0.547			NA											8	24					0	0	0.008291	0	0
PCGF2	7703	broad.mit.edu	37	17	36895085	36895085	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:36895085C>T	uc002hqp.1	-	7	589	c.346G>A	c.(346-348)GAG>AAG	p.E116K	PCGF2_uc002hqn.1_Missense_Mutation_p.E116K|PCGF2_uc002hqo.1_Missense_Mutation_p.E116K|PCGF2_uc010cvo.1_5'UTR|PCGF2_uc002hqq.1_Missense_Mutation_p.E116K	NM_007144	NP_009075	P35227	PCGF2_HUMAN	ring finger protein 110	116					negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2	Breast(7;9.07e-22)					TCCAAGACCTCGCCGCGGTCC	0.597			NA											33	239					0	0	0.00623	0	0
THRA	7067	broad.mit.edu	37	17	38240976	38240976	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:38240976C>G	uc002htw.2	+	6	967	c.484C>G	c.(484-486)CCT>GCT	p.P162A	THRA_uc010cwp.1_Missense_Mutation_p.P162A|THRA_uc002htv.2_Missense_Mutation_p.P162A|THRA_uc002htx.2_Missense_Mutation_p.P162A	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	162					negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	AGAGCCCACTCCTGAAGAGTG	0.597			NA											53	122					0	0	0.00361	0	0
KRT25	147183	broad.mit.edu	37	17	38907553	38907553	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:38907553G>T	uc002hve.2	-	4	756	c.695C>A	c.(694-696)GCT>GAT	p.A232D		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	232	Rod.|Linker 12.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				GTTGCCTCCAGCTGCGCACTG	0.488			NA											34	22					1.96642e-18	2.4175e-18	0.006999	1	0
KRTAP4-12	83755	broad.mit.edu	37	17	39279911	39279911	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:39279911C>A	uc002hwa.2	-	1	509	c.464G>T	c.(463-465)TGC>TTC	p.C155F		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	155	31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].|28.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ggattcacagcaagaggggca	0.199			NA											3	43					0.00909568	0.00929901	0.009096	1	0
CNTNAP1	8506	broad.mit.edu	37	17	40844610	40844610	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:40844610G>A	uc002iay.2	+	17	2840	c.2624G>A	c.(2623-2625)TGG>TAG	p.W875*	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	875	Laminin G-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GATGACGAGTGGCACCTGGTC	0.577			NA											100	63					0	0	0.00361	0	0
CDC27	996	broad.mit.edu	37	17	45234726	45234726	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:45234726G>C	uc002ild.3	-	6	627	c.500C>G	c.(499-501)ACA>AGA	p.T167R	CDC27_uc002ile.3_Missense_Mutation_p.T167R|CDC27_uc002ilf.3_Missense_Mutation_p.T167R|CDC27_uc010wkp.1_Missense_Mutation_p.T106R|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	167					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						GAATTTAAATGTTTGGTCAGG	0.368			NA											3	79					0	0	0.001984	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917367	48917367	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:48917367G>A	uc002isv.3	+	2	1412	c.718G>A	c.(718-720)GAG>AAG	p.E240K	WFIKKN2_uc010dbu.2_Missense_Mutation_p.E147K	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	240	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GCCCCGGCCTGAGATCACCTG	0.622			NA											32	63					0	0	0.005524	0	0
VEZF1	7716	broad.mit.edu	37	17	56060700	56060700	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:56060700G>C	uc002ivf.1	-	2	231	c.88C>G	c.(88-90)CTC>GTC	p.L30V	VEZF1_uc010dcn.1_5'UTR	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	30					cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						GAGCTCAGGAGGGGCAGCAAG	0.498			NA											26	99					0	0	0.007291	0	0
EPX	8288	broad.mit.edu	37	17	56280473	56280473	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:56280473C>T	uc002ivq.2	+	11	1826	c.1740C>T	c.(1738-1740)CTC>CTT	p.L580L		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	580					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						TCTGTGGGCTCTCCCAGCCCC	0.522			NA											37	56					0	0	0.00623	0	0
MPO	4353	broad.mit.edu	37	17	56356990	56356990	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:56356990G>T	uc002ivu.1	-	4	619	c.442C>A	c.(442-444)CAG>AAG	p.Q148K		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	148					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	ACATTCAGCTGGGCGGGCGTC	0.617			NA											40	24					6.34439e-16	7.59555e-16	0.00361	1	0
DHX40	79665	broad.mit.edu	37	17	57684443	57684443	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:57684443C>A	uc002ixn.1	+	18	2397	c.2250C>A	c.(2248-2250)GAC>GAA	p.D750E	DHX40_uc010woe.1_Missense_Mutation_p.D673E|DHX40_uc010wof.1_Missense_Mutation_p.D265E	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	750							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GAAATGATGACAAATCCATAT	0.403			NA											19	54					1.01871e-10	1.15893e-10	0.008871	1	0
KCNJ2	3759	broad.mit.edu	37	17	68171623	68171623	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:68171623G>T	uc010dfg.2	+	2	844	c.443G>T	c.(442-444)AGA>ATA	p.R148I	KCNJ2_uc002jir.2_Missense_Mutation_p.R148I	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	148	Extracellular (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					TATGGTTTCAGATGTGTCACG	0.512			NA											80	36					9.07295e-45	1.20155e-44	0.00361	1	0
TTYH2	94015	broad.mit.edu	37	17	72249298	72249298	+	Silent	SNP	G	G	A	rs138705961		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:72249298G>A	uc002jkc.2	+	12	1369	c.1338G>A	c.(1336-1338)CCG>CCA	p.P446P	TTYH2_uc010wqw.1_Silent_p.P425P|TTYH2_uc002jkd.2_Silent_p.P125P	NM_032646	NP_116035	Q9BSA4	TTYH2_HUMAN	tweety 2 isoform 1	446	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity|protein binding			ovary(3)|large_intestine(1)	4						ACAGTCCCCCGAGGGGACAGC	0.587			NA											11	171					0	0	0.001368	0	0
KIAA0195	9772	broad.mit.edu	37	17	73492070	73492070	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr17:73492070A>G	uc002jnz.3	+	23	3243	c.2968A>G	c.(2968-2970)ATG>GTG	p.M990V	KIAA0195_uc010wsa.1_Missense_Mutation_p.M1000V|KIAA0195_uc010wsb.1_Missense_Mutation_p.M630V|KIAA0195_uc002job.3_5'UTR	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	990					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GATAAAGATCATGCAAGAGTA	0.602			NA											33	19					0	0	0.005524	0	0
THOC1	9984	broad.mit.edu	37	18	265526	265526	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr18:265526G>C	uc002kkj.3	-	2	99	c.59C>G	c.(58-60)TCT>TGT	p.S20C	THOC1_uc002kkk.3_RNA|THOC1_uc002kkl.2_Missense_Mutation_p.S20C	NM_005131	NP_005122	Q96FV9	THOC1_HUMAN	THO complex 1	20					apoptosis|intronless viral mRNA export from host nucleus|mRNA processing|regulation of transcription elongation, DNA-dependent|RNA splicing|signal transduction|transcription, DNA-dependent	cytoplasm|nuclear matrix|nuclear speck|THO complex part of transcription export complex	DNA binding|protein binding|RNA binding			ovary(1)	1		all_cancers(4;0.0896)|Myeloproliferative disorder(11;0.0412)				CTCTCTGGTAGACTTCTAAAA	0.313			NA											2	10					0	0	0.004672	0	0
KIAA0802	23255	broad.mit.edu	37	18	8819032	8819032	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr18:8819032C>T	uc002knr.2	+	13	3073	c.2931C>T	c.(2929-2931)CCC>CCT	p.P977P	KIAA0802_uc002knq.2_Silent_p.P936P|KIAA0802_uc002kns.2_Intron	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1287											0						ACGTTCGCCCCTTTCCCCACC	0.527			NA											45	101					0	0	0.00361	0	0
DSG4	147409	broad.mit.edu	37	18	28993456	28993456	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr18:28993456G>A	uc002kwq.2	+	16	3156	c.3021G>A	c.(3019-3021)ATG>ATA	p.M1007I	DSG4_uc002kwr.2_Missense_Mutation_p.M1026I	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	1007	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGCAAATGATGAGTCCAGACC	0.473			NA											9	82					0	0	0.000978	0	0
PIK3C3	5289	broad.mit.edu	37	18	39637886	39637886	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr18:39637886G>T	uc002lap.2	+	22	2361	c.2303G>T	c.(2302-2304)CGG>CTG	p.R768L	PIK3C3_uc010xcl.1_Missense_Mutation_p.R705L|PIK3C3_uc002laq.2_Missense_Mutation_p.R253L	NM_002647	NP_002638	Q8NEB9	PK3C3_HUMAN	catalytic phosphatidylinositol 3-kinase 3	768	PI3K/PI4K.				cell cycle|cytokinesis|fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	midbody|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|protein binding			lung(8)|ovary(1)|breast(1)	10						ATTTTGGGTCGGGATCCAAAG	0.428	NSCLC(37;552 1060 2683 16430 37914)		NA								TSP Lung(28;0.18)			17	30					6.33239e-15	7.47679e-15	0.010504	1	0
LIPG	9388	broad.mit.edu	37	18	47091756	47091756	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr18:47091756C>G	uc002ldv.2	+	2	419	c.167C>G	c.(166-168)TCC>TGC	p.S56C	LIPG_uc002ldu.1_Missense_Mutation_p.S56C|LIPG_uc010xdh.1_Missense_Mutation_p.S56C	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	56					cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						CTCCGCACCTCCAAGGACCCA	0.443	Pancreas(126;280 1778 12814 26243 34948)		NA											20	29					0	0	0.001882	0	0
ZNF407	55628	broad.mit.edu	37	18	72343820	72343820	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr18:72343820A>G	uc002llw.2	+	1	902	c.845A>G	c.(844-846)CAG>CGG	p.Q282R	ZNF407_uc010xfc.1_Missense_Mutation_p.Q282R|ZNF407_uc010dqu.1_Missense_Mutation_p.Q282R|ZNF407_uc002llu.2_Missense_Mutation_p.Q281R	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	282					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GGATTTGTACAGATCTTAACA	0.363			NA											38	36					0	0	0.003214	0	0
GALR1	2587	broad.mit.edu	37	18	74962762	74962762	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr18:74962762C>G	uc002lms.3	+	1	755	c.258C>G	c.(256-258)CTC>CTG	p.L86L		NM_001480	NP_001471	P47211	GALR1_HUMAN	galanin receptor 1	86	Helical; Name=2; (Potential).				digestion|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity			lung(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.03e-06)|BRCA - Breast invasive adenocarcinoma(31;0.104)		CCTACCTGCTCTTCTGCATCC	0.622			NA											61	48					0	0	0.00361	0	0
LPPR3	79948	broad.mit.edu	37	19	814446	814446	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:814446G>T	uc002lpx.1	-	7	883	c.819C>A	c.(817-819)ATC>ATA	p.I273I	LPPR3_uc010dru.1_Silent_p.I185I|LPPR3_uc002lpw.1_Silent_p.I301I|LPPR3_uc002lpy.1_Silent_p.I54I	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	273	Helical; (Potential).					integral to membrane	phosphatidate phosphatase activity				0						GGTAGGCAGCGATGCCCGCCC	0.667			NA											9	15					2.68362e-12	3.08886e-12	0.001368	1	0
KISS1R	84634	broad.mit.edu	37	19	917741	917741	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:917741A>G	uc002lqk.3	+	1	400	c.239A>G	c.(238-240)TAC>TGC	p.Y80C		NM_032551	NP_115940	Q969F8	KISSR_HUMAN	G protein-coupled receptor 54	80	Helical; Name=2; (Potential).				behavior	integral to membrane|plasma membrane	neuropeptide receptor activity|protein binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCAACTTCTACATCGGTGAG	0.701			NA											5	16					0	0	0.001984	0	0
HMHA1	23526	broad.mit.edu	37	19	1079762	1079762	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:1079762G>A	uc002lqz.1	+	12	1666	c.1435G>A	c.(1435-1437)GAG>AAG	p.E479K	HMHA1_uc010xgd.1_Missense_Mutation_p.E495K|HMHA1_uc010xge.1_Missense_Mutation_p.E319K|HMHA1_uc002lra.1_Missense_Mutation_p.E319K|HMHA1_uc002lrb.1_Missense_Mutation_p.E362K|HMHA1_uc002lrc.1_Missense_Mutation_p.E114K	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	479	Potential.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAGAAGCAGGAGCTGGAGGA	0.687			NA											32	51					0	0	0.003755	0	0
PLIN5	440503	broad.mit.edu	37	19	4529859	4529859	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:4529859G>A	uc002mas.2	-	4	329	c.276C>T	c.(274-276)CTC>CTT	p.L92L	PLIN5_uc002mat.1_Silent_p.L92L	NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	92						lipid particle					0						CCCTGCAGGCGAGGCTGTTCA	0.373			NA											27	57					0	0	0.008361	0	0
DENND1C	79958	broad.mit.edu	37	19	6475302	6475302	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:6475302C>T	uc002mfe.2	-	14	1128	c.1036G>A	c.(1036-1038)GCA>ACA	p.A346T	DENND1C_uc002mfb.2_5'UTR|DENND1C_uc002mfc.2_5'UTR|DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Missense_Mutation_p.A302T	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	346	dDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						CAGACGAGTGCGTCGCGGTAC	0.627			NA											7	21					0	0	0.008291	0	0
CD70	970	broad.mit.edu	37	19	6590912	6590912	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:6590912G>C	uc002mfi.2	-	1	252	c.102C>G	c.(100-102)CTC>CTG	p.L34L	CD70_uc010xjf.1_Silent_p.L34L	NM_001252	NP_001243	P32970	CD70_HUMAN	tumor necrosis factor ligand superfamily, member	34	Helical; Signal-anchor for type II membrane protein; (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to membrane of membrane fraction|integral to plasma membrane	cytokine activity|protease binding|tumor necrosis factor receptor binding				0						TGCACACCACGAGGCAGATCA	0.622	Pancreas(183;2617 2876 10173 34193)		NA											25	83					0	0	0.005443	0	0
MUC16	94025	broad.mit.edu	37	19	8969281	8969281	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:8969281C>A	uc002mkp.2	-	79	43267	c.43063G>T	c.(43063-43065)GAT>TAT	p.D14355Y	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.D1155Y|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCACCGCATCCTCAATATTC	0.453			NA											55	109					4.52765e-18	5.52663e-18	0.00361	1	0
MUC16	94025	broad.mit.edu	37	19	8994195	8994195	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:8994195G>A	uc002mkp.2	-	65	41694	c.41490C>T	c.(41488-41490)TTC>TTT	p.F13830F	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.F647F|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13833	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTGTTCTTGAACAAGGGCC	0.537			NA											33	64					0	0	0.009718	0	0
MUC16	94025	broad.mit.edu	37	19	9049135	9049135	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:9049135G>A	uc002mkp.2	-	5	32700	c.32496C>T	c.(32494-32496)AGC>AGT	p.S10832S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10834	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAACTGTTGGGCTGGTCTGTG	0.483			NA											44	89					0	0	0.00361	0	0
MUC16	94025	broad.mit.edu	37	19	9062050	9062050	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:9062050G>C	uc002mkp.2	-	3	25600	c.25396C>G	c.(25396-25398)CAG>GAG	p.Q8466E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8468	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGTGAACTGATCAGGCCCT	0.498			NA											56	142					0	0	0.00361	0	0
KEAP1	9817	broad.mit.edu	37	19	10610405	10610405	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:10610405G>A	uc002moq.1	-	2	461	c.305C>T	c.(304-306)TCA>TTA	p.S102L	KEAP1_uc002mor.1_Missense_Mutation_p.S102L	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	102	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			AGGGCTGGATGAGGCCAGCAC	0.627			NA											16	21					0	0	0.004007	0	0
AP1M2	10053	broad.mit.edu	37	19	10692432	10692432	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:10692432G>A	uc002mpc.2	-	4	474	c.390C>T	c.(388-390)ATC>ATT	p.I130I	AP1M2_uc002mpd.2_Silent_p.I130I	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	130					cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			ACTCCTGCAGGATCTTGCTGT	0.602			NA											16	30					0	0	0.006122	0	0
DOCK6	57572	broad.mit.edu	37	19	11347230	11347230	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:11347230G>A	uc002mqs.3	-	20	2225	c.2184C>T	c.(2182-2184)TTC>TTT	p.F728F	DOCK6_uc010xlq.1_Silent_p.F32F|LOC55908_uc010dxw.2_5'Flank|LOC55908_uc010dxx.2_5'Flank	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	728	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GCACCAGGGTGAAGAATTTGT	0.617			NA											4	12					0	0	0.009096	0	0
PLVAP	83483	broad.mit.edu	37	19	17488060	17488061	+	Missense_Mutation	DNP	CG	CG	GA	rs145946398		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:17488060_17488061CG>GA	uc002ngk.1	-	1	87_88	c.37_38CG>TC	c.(37-39)CGG>TCG	p.R13S		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	13	Cytoplasmic (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						GCCCCCCGCCCGAGCGTAGGAC	0.653			NA											37	110					0	0	0.004672	0	0
PDE4C	5143	broad.mit.edu	37	19	18331046	18331046	+	Silent	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:18331046C>A	uc010xqc.1	-	7	1272	c.792G>T	c.(790-792)CGG>CGT	p.R264R	PDE4C_uc002nik.3_Silent_p.R264R|PDE4C_uc002nil.3_Silent_p.R264R|PDE4C_uc002nif.3_Silent_p.R33R|PDE4C_uc002nig.3_Silent_p.R34R|PDE4C_uc002nih.3_Silent_p.R34R|PDE4C_uc010ebk.2_Silent_p.R158R|PDE4C_uc002nii.3_Silent_p.R232R|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_Silent_p.R33R|PDE4C_uc010ebm.1_RNA	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	264					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	CCAGGAAGGTCCGGGAGATGT	0.542			NA											74	169					8.20938e-55	1.09352e-54	0.00361	1	0
ELL	8178	broad.mit.edu	37	19	18561707	18561707	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:18561707G>A	uc002njh.2	-	8	1117	c.1045C>T	c.(1045-1047)CAG>TAG	p.Q349*	ELL_uc010ebq.2_Nonsense_Mutation_p.Q292*|ELL_uc002njg.2_Nonsense_Mutation_p.Q216*	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	349					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		ACGGCAGGCTGAGCTCTCTGA	0.627			NA	T	MLL	AL						OREG0025365	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	24					0	0	0.00308	0	0
ZNF93	81931	broad.mit.edu	37	19	20026089	20026089	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:20026089G>T	uc002non.2	+	2	115	c.4G>T	c.(4-6)GGA>TGA	p.G2*	ZNF93_uc002nom.2_Nonsense_Mutation_p.G2*	NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	2						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						TGTTTTTCAGGGACCATTGCA	0.413			NA											39	137					1.30916e-28	1.67867e-28	0.00361	1	0
ZNF91	7644	broad.mit.edu	37	19	23542380	23542380	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:23542380T>A	uc002nre.2	-	4	3514	c.3401A>T	c.(3400-3402)TAC>TTC	p.Y1134F	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.Y1102F	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1134	C2H2-type 36.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TTCACATTTGTAGGGTTTCTC	0.323			NA											16	31					0	0	0.003163	0	0
ZNF675	171392	broad.mit.edu	37	19	23836495	23836495	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:23836495G>A	uc002nri.2	-	4	1422	c.1240C>T	c.(1240-1242)CAT>TAT	p.H414Y		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	414	C2H2-type 10.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ATTCTCTTATGTGTAGTAAGG	0.373			NA											21	45					0	0	0.00278	0	0
CCNE1	898	broad.mit.edu	37	19	30313407	30313407	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:30313407T>C	uc002nsn.2	+	11	1190	c.1007T>C	c.(1006-1008)ATG>ACG	p.M336T	CCNE1_uc002nso.2_Missense_Mutation_p.M321T|CCNE1_uc002nsp.2_Missense_Mutation_p.M83T	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	336					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			CCATTTGCCATGGTTATAAGG	0.498			NA											58	103					0	0	0.00361	0	0
ZNF536	9745	broad.mit.edu	37	19	31039132	31039132	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:31039132A>T	uc002nsu.1	+	4	2744	c.2606A>T	c.(2605-2607)CAC>CTC	p.H869L	ZNF536_uc010edd.1_Missense_Mutation_p.H869L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	869					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TCTGGAGATCACTCGGGGCAG	0.582			NA											24	60					0	0	0.005443	0	0
ZNF599	148103	broad.mit.edu	37	19	35251243	35251243	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:35251243C>T	uc010edn.1	-	4	851	c.463G>A	c.(463-465)GAT>AAT	p.D155N	ZNF599_uc010edm.1_Missense_Mutation_p.D118N	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	155					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TCCAAATCATCATGTTTATAA	0.438			NA											41	103					0	0	0.002522	0	0
HPN	3249	broad.mit.edu	37	19	35556566	35556566	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:35556566G>A	uc002nxq.1	+	12	1276	c.1031G>A	c.(1030-1032)GGT>GAT	p.G344D	HPN_uc002nxr.1_Missense_Mutation_p.G344D|HPN_uc002nxs.1_Missense_Mutation_p.G186D|HPN_uc010xsh.1_Missense_Mutation_p.G313D|HPN_uc002nxt.1_Missense_Mutation_p.G228D|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	344	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	TACCCCGAGGGTGGCATTGAT	0.602			NA											6	103					0	0	0.00308	0	0
CD22	933	broad.mit.edu	37	19	35823807	35823807	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:35823807G>C	uc010edt.2	+	3	469	c.392G>C	c.(391-393)CGA>CCA	p.R131P	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Missense_Mutation_p.R131P|CD22_uc010edv.2_Missense_Mutation_p.R131P|CD22_uc002nzb.3_Missense_Mutation_p.R131P	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	131	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TGGATGGAACGAATACACCTC	0.552	Ovarian(42;1009 1133 23674 26041)		NA											25	58					0	0	0.007291	0	0
PAF1	54623	broad.mit.edu	37	19	39876822	39876822	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:39876822C>T	uc002old.2	-	14	1580	c.1405G>A	c.(1405-1407)GAG>AAG	p.E469K	PAF1_uc002ole.1_Missense_Mutation_p.M397I	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	469					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			CCTCTGTCCTCATCATCAGAG	0.617			NA											70	115					0	0	0.00361	0	0
LGALS14	56891	broad.mit.edu	37	19	40199894	40199894	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:40199894G>A	uc002omg.2	+	4	584	c.361G>A	c.(361-363)GTG>ATG	p.V121M	LGALS14_uc002omf.2_Missense_Mutation_p.V150M	NM_020129	NP_064514	Q8TCE9	PPL13_HUMAN	lectin, galactoside-binding, soluble, 14 isoform	121	Galectin.					nucleus	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;4.39e-06)|all_lung(34;6.76e-08)|Lung NSC(34;7.98e-08)|Ovarian(47;0.06)	Myeloproliferative disorder(2;0.0741)	Epithelial(26;1.08e-24)|OV - Ovarian serous cystadenocarcinoma(5;1.92e-24)|all cancers(26;4.12e-22)			GCCAGCATCTGTGAAGATGCT	0.458			NA											15	60					0	0	0.006122	0	0
FCGBP	8857	broad.mit.edu	37	19	40433429	40433429	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:40433429A>G	uc002omp.3	-	2	848	c.840T>C	c.(838-840)CAT>CAC	p.H280H		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	280	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGATACCCCCATGGTTGTAGG	0.592			NA											17	40					0	0	0.008871	0	0
HNRNPUL1	11100	broad.mit.edu	37	19	41778021	41778021	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:41778021C>T	uc002oqb.3	+	3	742	c.453C>T	c.(451-453)ACC>ACT	p.T151T	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_Silent_p.T51T|HNRNPUL1_uc002oqa.3_Silent_p.T51T|HNRNPUL1_uc010ehm.2_Silent_p.T151T|HNRNPUL1_uc002oqc.3_Silent_p.T108T|HNRNPUL1_uc002oqe.3_Intron|HNRNPUL1_uc002oqd.3_Silent_p.T51T|HNRNPUL1_uc010ehn.2_Silent_p.T51T|HNRNPUL1_uc010eho.2_Silent_p.T51T|HNRNPUL1_uc010xvy.1_Silent_p.T51T|HNRNPUL1_uc010ehp.2_Silent_p.T7T|HNRNPUL1_uc010ehl.1_Silent_p.T51T	NM_007040	NP_008971	Q9BUJ2	HNRL1_HUMAN	heterogeneous nuclear ribonucleoprotein U-like 1	151					nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	enzyme binding|RNA binding			central_nervous_system(1)|skin(1)	2						GAGCACCCACCAGCTTCCTCC	0.502			NA											58	103					0	0	0.00361	0	0
TMEM145	284339	broad.mit.edu	37	19	42818843	42818843	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:42818843G>T	uc002otk.1	+	4	404	c.352G>T	c.(352-354)GGC>TGC	p.G118C		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	118						integral to membrane					0		Prostate(69;0.00682)				TGCCTGGTCCGGCTGTCAGGT	0.622			NA											60	101					1.72039e-30	2.23098e-30	0.00361	1	0
ZNF223	7766	broad.mit.edu	37	19	44570323	44570323	+	Silent	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:44570323T>C	uc002oyf.1	+	5	595	c.342T>C	c.(340-342)CCT>CCC	p.P114P	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				TAACCAGGCCTCAAGACTCTA	0.473			NA											12	41					0	0	0.001368	0	0
PRKD2	25865	broad.mit.edu	37	19	47197300	47197300	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:47197300C>G	uc002pfh.2	-	11	1750	c.1408G>C	c.(1408-1410)GTC>CTC	p.V470L	PRKD2_uc010ekt.2_5'Flank|PRKD2_uc002pfe.2_5'UTR|PRKD2_uc002pff.2_5'UTR|PRKD2_uc002pfg.2_Missense_Mutation_p.V313L|PRKD2_uc002pfi.2_Missense_Mutation_p.V470L|PRKD2_uc002pfj.2_Missense_Mutation_p.V470L|PRKD2_uc010xye.1_Missense_Mutation_p.V470L|PRKD2_uc002pfk.2_Missense_Mutation_p.V313L	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	470	PH.				cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		TTGGCAGTGACGATCTCAAAG	0.652			NA											25	56					0	0	0.00632	0	0
KPTN	11133	broad.mit.edu	37	19	47986462	47986462	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:47986462C>T	uc002pgy.2	-	4	509	c.405G>A	c.(403-405)CTG>CTA	p.L135L	KPTN_uc010xys.1_RNA|uc002pgz.1_5'Flank	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	kaptin (actin binding protein)	135					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			ovary(1)	1		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		GCTCCAGGTTCAGGCAGCTCT	0.612			NA											67	143					0	0	0.00361	0	0
AKT1S1	84335	broad.mit.edu	37	19	50373285	50373285	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:50373285C>T	uc002pql.3	-	5	1386	c.660G>A	c.(658-660)GCG>GCA	p.A220A	PNKP_uc002pqh.2_5'Flank|PNKP_uc002pqi.2_5'Flank|PNKP_uc002pqj.2_5'Flank|PNKP_uc010enm.2_5'Flank|PNKP_uc002pqk.2_5'Flank|AKT1S1_uc002pqn.3_Silent_p.A220A|AKT1S1_uc002pqm.3_Silent_p.A220A	NM_032375	NP_115751	Q96B36	AKTS1_HUMAN	AKT1 substrate 1 (proline-rich)	220					negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|nerve growth factor receptor signaling pathway|neuroprotection|phosphatidylinositol-mediated signaling|regulation of survival gene product expression	cytosolic part	protein binding				0		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.0132)		CGCGCATGCTCGCCGCGATGC	0.716			NA											10	14					0	0	0.000978	0	0
VRK3	51231	broad.mit.edu	37	19	50498136	50498136	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:50498136C>A	uc002prg.2	-	9	903	c.805G>T	c.(805-807)GCC>TCC	p.A269S	VRK3_uc002prh.1_Missense_Mutation_p.A269S|VRK3_uc002pri.1_Missense_Mutation_p.A219S|VRK3_uc010ens.2_Missense_Mutation_p.A269S|VRK3_uc010ybl.1_Missense_Mutation_p.A219S|VRK3_uc010ybm.1_Missense_Mutation_p.A38S|VRK3_uc002prj.1_Missense_Mutation_p.A219S|VRK3_uc002prk.1_Missense_Mutation_p.A269S|VRK3_uc010ent.1_Missense_Mutation_p.A25S|VRK3_uc002prl.2_Missense_Mutation_p.A269S|VRK3_uc010ybn.1_Silent_p.R246R	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	269	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		ACATCCAGGGCCGACTGAAGG	0.622	Pancreas(6;90 181 4352 12603 17050 34726 35237 44094)		NA											20	49					1.10513e-12	1.28061e-12	0.002299	1	0
CEACAM18	729767	broad.mit.edu	37	19	51983826	51983826	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:51983826G>T	uc002pwv.1	+	3	475	c.475G>T	c.(475-477)GGC>TGC	p.G159C		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	159						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GAACAGAGAAGGCAGCCTGTT	0.557			NA											16	46					1.37285e-15	1.63787e-15	0.004007	1	0
ZNF528	84436	broad.mit.edu	37	19	52909814	52909814	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:52909814G>A	uc002pzh.2	+	6	615	c.189G>A	c.(187-189)AAG>AAA	p.K63K	ZNF528_uc002pzi.2_5'UTR	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	63	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		TAGAGCAAAAGAGAGATCCCT	0.478			NA											30	68					0	0	0.003271	0	0
ZNF765	91661	broad.mit.edu	37	19	53911769	53911769	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:53911769C>T	uc010ydx.1	+	6	1288	c.961C>T	c.(961-963)CAT>TAT	p.H321Y	ZNF765_uc002qbm.2_Missense_Mutation_p.H321Y|ZNF765_uc002qbn.2_Intron	NM_001040185	NP_001035275	Q7L2R6	ZN765_HUMAN	zinc finger protein 765	321	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00379)		TAGGAGAATTCATACTGGAGA	0.403			NA											28	86					0	0	0.00632	0	0
NLRP12	91662	broad.mit.edu	37	19	54313954	54313954	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:54313954G>T	uc002qch.3	-	3	1179	c.959C>A	c.(958-960)ACG>AAG	p.T320K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.T320K|NLRP12_uc002qcj.3_Missense_Mutation_p.T320K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.T320K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	320	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		AAGCAGCTCCGTGGGCCGTTT	0.567			NA											21	25					3.62473e-10	4.09648e-10	0.001882	1	0
LAIR2	3904	broad.mit.edu	37	19	55021737	55021737	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:55021737G>A	uc002qgc.2	+	5	539	c.417G>A	c.(415-417)GGG>GGA	p.G139G	LAIR2_uc002qgd.2_Silent_p.G122G|LAIR2_uc010erl.2_Missense_Mutation_p.G108E	NM_002288	NP_002279	Q6ISS4	LAIR2_HUMAN	leukocyte-associated immunoglobulin-like	139						extracellular region	receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0967)		TCCTCACAGGGACTGTGCCAG	0.373			NA											21	65					0	0	0.00278	0	0
BRSK1	84446	broad.mit.edu	37	19	55816287	55816287	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:55816287G>T	uc002qkg.2	+	14	1993	c.1716G>T	c.(1714-1716)CAG>CAT	p.Q572H	BRSK1_uc002qkf.2_Missense_Mutation_p.Q588H|BRSK1_uc002qkh.2_Missense_Mutation_p.Q267H	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	572					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		GCAAGATGCAGGGTATGGGGG	0.627			NA											21	48					7.92952e-12	9.11165e-12	0.003954	1	0
NLRP9	338321	broad.mit.edu	37	19	56244602	56244602	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr19:56244602G>T	uc002qly.2	-	2	623	c.595C>A	c.(595-597)CTG>ATG	p.L199M		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	199	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AGGAGCTCCAGTAAGCTGGTC	0.473			NA											7	18					3.09899e-07	3.35846e-07	0.004482	1	0
SNTG2	54221	broad.mit.edu	37	2	1133490	1133490	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:1133490G>C	uc002qwq.2	+	6	534	c.406G>C	c.(406-408)GAA>CAA	p.E136Q	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	136	PDZ.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		AACTCATGAAGAAGTGGTAAG	0.269			NA											26	47					0	0	0.003271	0	0
PXDN	7837	broad.mit.edu	37	2	1684106	1684106	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:1684106C>T	uc002qxa.2	-	7	653	c.589G>A	c.(589-591)GAC>AAC	p.D197N	PXDN_uc002qxb.1_Missense_Mutation_p.D197N|PXDN_uc002qxc.1_Missense_Mutation_p.D14N	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	197	LRRCT.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		ATTTCACAGTCGCAGTGAAGT	0.582			NA											18	48					0	0	0.001882	0	0
APOB	338	broad.mit.edu	37	2	21250865	21250865	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:21250865A>G	uc002red.2	-	14	2030	c.1902T>C	c.(1900-1902)TCT>TCC	p.S634S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	634	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GATAGTTCCGAGAGAATTTTC	0.363			NA											37	82					0	0	0.007835	0	0
ASXL2	55252	broad.mit.edu	37	2	25973043	25973043	+	Nonsense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:25973043G>C	uc002rgs.2	-	11	1603	c.1382C>G	c.(1381-1383)TCA>TGA	p.S461*	ASXL2_uc002rgt.1_Nonsense_Mutation_p.S201*	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	461					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGGGGCTCTGAAGATGTGGA	0.483			NA											86	144					0	0	0.00361	0	0
TRIM54	57159	broad.mit.edu	37	2	27505683	27505683	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:27505683C>T	uc002rjo.2	+	1	84	c.84C>T	c.(82-84)ATC>ATT	p.I28I	TRIM54_uc002rjn.2_Silent_p.I28I	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	28	RING-type.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCTGCCCCATCTGCCTGGAGA	0.587			NA											126	249					0	0	0.00361	0	0
MAP4K3	8491	broad.mit.edu	37	2	39552700	39552700	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:39552700C>A	uc002rro.2	-	12	968	c.877G>T	c.(877-879)GAT>TAT	p.D293Y	MAP4K3_uc002rrp.2_Missense_Mutation_p.D293Y|MAP4K3_uc010yns.1_5'UTR	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	293					JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				GTGGAATGATCTGGATTATTT	0.318			NA											24	60					2.2171e-23	2.7805e-23	0.009535	1	0
RHOQ	23433	broad.mit.edu	37	2	46808133	46808133	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:46808133G>T	uc002rva.2	+	5	848	c.529G>T	c.(529-531)GAG>TAG	p.E177*	uc002rvb.2_5'Flank	NM_012249	NP_036381	P17081	RHOQ_HUMAN	ras-like protein TC10 precursor	177					cortical actin cytoskeleton organization|insulin receptor signaling pathway|negative regulation of establishment of protein localization in plasma membrane|positive regulation of filopodium assembly|positive regulation of glucose import|positive regulation of transcription from RNA polymerase II promoter|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	actin filament|cytosol|plasma membrane	GBD domain binding|GTP binding|GTPase activity|profilin binding			skin(2)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TGTTTTTGATGAGGCTATCAT	0.348			NA											32	65					2.1956e-27	2.80481e-27	0.004289	1	0
USP34	9736	broad.mit.edu	37	2	61415551	61415551	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:61415551T>C	uc002sbe.2	-	80	10349	c.10327A>G	c.(10327-10329)AGA>GGA	p.R3443G	USP34_uc002sbd.2_Missense_Mutation_p.R245G	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	3443					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TCGTCATATCTACCATTGTTG	0.398			NA											22	62					0	0	0.010504	0	0
ALMS1	7840	broad.mit.edu	37	2	73676206	73676206	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:73676206C>G	uc002sje.1	+	10	2666	c.2555C>G	c.(2554-2556)CCA>CGA	p.P852R	ALMS1_uc002sjf.1_Missense_Mutation_p.P808R|ALMS1_uc002sjg.2_Missense_Mutation_p.P238R|ALMS1_uc002sjh.1_Missense_Mutation_p.P238R	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	850	7.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACTGGGACACCAGCTGTAACC	0.498			NA											16	47					0	0	0.00499	0	0
ALMS1	7840	broad.mit.edu	37	2	73676340	73676340	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:73676340C>G	uc002sje.1	+	10	2800	c.2689C>G	c.(2689-2691)CAG>GAG	p.Q897E	ALMS1_uc002sjf.1_Missense_Mutation_p.Q853E|ALMS1_uc002sjg.2_Missense_Mutation_p.Q283E|ALMS1_uc002sjh.1_Missense_Mutation_p.Q283E	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	895	8.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACCAGGTGATCAGAAGACTGG	0.458			NA											37	71					0	0	0.00874	0	0
ALMS1	7840	broad.mit.edu	37	2	73826634	73826634	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:73826634A>G	uc002sje.1	+	19	11768	c.11657A>G	c.(11656-11658)AAG>AGG	p.K3886R	ALMS1_uc002sjf.1_Missense_Mutation_p.K3842R|ALMS1_uc002sjh.1_Missense_Mutation_p.K3272R	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3884					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ATGTTAAACAAGGGCATACAA	0.254			NA											43	96					0	0	0.00361	0	0
Unknown	0	broad.mit.edu	37	2	89890585	89890585	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:89890585G>C	uc010yts.1	+	1	24	c.18G>C	c.(16-18)CAG>CAC	p.Q6H						RecName: Full=Ig kappa chain V-II region Cum;												NA						TCCCTGCTCAGCTCCTGGGGC	0.552			NA											16	158					0	0	0.002299	0	0
IL18RAP	8807	broad.mit.edu	37	2	103040355	103040355	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:103040355A>T	uc002tbx.2	+	4	639	c.155A>T	c.(154-156)CAG>CTG	p.Q52L	IL18RAP_uc010fiz.2_Intron	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	52	Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CCAGAGCCACAGAAATCACAT	0.403			NA											15	26					0	0	0.004007	0	0
SLC9A4	389015	broad.mit.edu	37	2	103149081	103149081	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:103149081G>T	uc002tbz.3	+	12	2788	c.2331G>T	c.(2329-2331)TGG>TGT	p.W777C		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	777	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GGTCGAGGTGGACAGCTGACC	0.507			NA											5	20					5.9392e-07	6.40612e-07	0.001168	1	0
CKAP2L	150468	broad.mit.edu	37	2	113514362	113514362	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:113514362C>G	uc002tie.2	-	4	665	c.586G>C	c.(586-588)GAG>CAG	p.E196Q	CKAP2L_uc002tif.2_Intron|CKAP2L_uc010yxp.1_Missense_Mutation_p.E31Q|CKAP2L_uc010yxq.1_Missense_Mutation_p.E31Q	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	196						centrosome					0						GGCTTCCTCTCAGGTTCTGTT	0.338			NA											7	23					0	0	0.001984	0	0
GYPC	2995	broad.mit.edu	37	2	127451438	127451438	+	Splice_Site	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:127451438A>G	uc002tnq.2	+	3	263	c.107_splice	c.e3-2	p.E36_splice	GYPC_uc002tnr.2_Splice_Site_p.E17_splice|GYPC_uc010flv.2_Splice_Site	NM_002101	NP_002092	P04921	GLPC_HUMAN	glycophorin C isoform 1							cortical cytoskeleton|integral to plasma membrane	protein binding			central_nervous_system(1)	1	Colorectal(110;0.0533)			BRCA - Breast invasive adenocarcinoma(221;0.075)		CTCTGTTCACAGAGCCTGATC	0.542	Melanoma(110;806 1600 6704 9981 33404)		NA											28	74					0	0	0.009535	0	0
MGAT5	4249	broad.mit.edu	37	2	135076221	135076221	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:135076221T>A	uc002ttv.1	+	4	629	c.484T>A	c.(484-486)TGG>AGG	p.W162R		NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	162	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		CTTGTTTCAGTGGATGAAAGA	0.488			NA											48	131					0	0	0.00361	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147346258	147346258	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:147346258G>A	uc002twf.3	+	1	1634	c.718G>A	c.(718-720)GCT>ACT	p.A240T		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						CCAGAACCGTGCTGCATACTA	0.517			NA											28	55					0	0	0.009535	0	0
MBD5	55777	broad.mit.edu	37	2	149226874	149226874	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:149226874G>T	uc002twm.3	+	9	2350	c.1362G>T	c.(1360-1362)GAG>GAT	p.E454D	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.E454D|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	454						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GAAGGATTGAGGCATCGCCCC	0.502			NA											12	18					1.3612e-06	1.45904e-06	0.003163	1	0
ACVR1C	130399	broad.mit.edu	37	2	158390463	158390463	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:158390463A>G	uc002tzk.3	-	9	1692	c.1449T>C	c.(1447-1449)TCT>TCC	p.S483S	ACVR1C_uc002tzl.3_Silent_p.S403S|ACVR1C_uc010fof.2_Silent_p.S326S|ACVR1C_uc010foe.2_Silent_p.S433S	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	483	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						CACAAAGTTGAGATATAGTCT	0.403			NA											30	56					0	0	0.002096	0	0
SCN1A	6323	broad.mit.edu	37	2	166903286	166903286	+	Silent	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:166903286T>C	uc010zcz.1	-	9	1389	c.1371A>G	c.(1369-1371)GCA>GCG	p.A457A	SCN1A_uc002udo.3_Silent_p.A326A|SCN1A_uc010fpk.2_Silent_p.A326A	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	457						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TTACCTGAGCTGCCTCCTGTT	0.458			NA											14	40					0	0	0.003163	0	0
ABCB11	8647	broad.mit.edu	37	2	169869891	169869891	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:169869891C>G	uc002ueo.1	-	5	406	c.280G>C	c.(280-282)GAC>CAC	p.D94H		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	94	ABC transmembrane type-1 1.|Extracellular (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	AACTCAACGTCGTAGTCAATA	0.428			NA											54	106					0	0	0.00361	0	0
PPIG	9360	broad.mit.edu	37	2	170462555	170462555	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:170462555A>G	uc002uez.2	+	5	363	c.143A>G	c.(142-144)AAG>AGG	p.K48R	PPIG_uc010fpx.2_Missense_Mutation_p.K48R|PPIG_uc010fpy.2_Missense_Mutation_p.K44R|PPIG_uc002ufa.2_Missense_Mutation_p.K48R|PPIG_uc002ufb.2_Missense_Mutation_p.K48R|PPIG_uc002ufc.1_Missense_Mutation_p.K48R|PPIG_uc002ufd.2_Missense_Mutation_p.K48R	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	48	PPIase cyclophilin-type.				protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	ATAGGTGAAAAGGGGACCGGG	0.353			NA											3	71					0	0	0.009096	0	0
EVX2	344191	broad.mit.edu	37	2	176948242	176948242	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:176948242A>G	uc010zeu.1	-	1	449	c.263T>C	c.(262-264)GTC>GCC	p.V88A		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	88						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		TTCGGAGGAGACGGTGCTTTC	0.627			NA											19	59					0	0	0.001882	0	0
HOXD3	3232	broad.mit.edu	37	2	177036264	177036264	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:177036264G>C	uc002ukt.1	+	3	737	c.561G>C	c.(559-561)AAG>AAC	p.K187N		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	187					anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		GCGAGGACAAGAGCCCGCCAG	0.637			NA											17	27					0	0	0.00499	0	0
TTN	7273	broad.mit.edu	37	2	179397734	179397734	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:179397734G>A	uc010zfg.1	-	307	96128	c.95904C>T	c.(95902-95904)CTC>CTT	p.L31968L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L25663L|TTN_uc010zfi.1_Silent_p.L25596L|TTN_uc010zfj.1_Silent_p.L25471L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32895							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGGCATCCGGAGTTTTCTCT	0.453			NA											5	159					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179430662	179430662	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:179430662C>A	uc010zfg.1	-	275	72717	c.72493G>T	c.(72493-72495)GTG>TTG	p.V24165L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V17860L|TTN_uc010zfi.1_Missense_Mutation_p.V17793L|TTN_uc010zfj.1_Missense_Mutation_p.V17668L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25092							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTACTACTCACATTAGCATAC	0.418			NA											25	65					2.44723e-14	2.87466e-14	0.004656	1	0
TTN	7273	broad.mit.edu	37	2	179436378	179436378	+	Silent	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:179436378A>T	uc010zfg.1	-	275	67001	c.66777T>A	c.(66775-66777)ACT>ACA	p.T22259T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T15954T|TTN_uc010zfi.1_Silent_p.T15887T|TTN_uc010zfj.1_Silent_p.T15762T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23186							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCCAGGAAAGAGTAATACTAT	0.433			NA											20	29					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179642232	179642232	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:179642232G>T	uc010zfg.1	-	26	4784	c.4560C>A	c.(4558-4560)GCC>GCA	p.A1520A	TTN_uc010zfh.1_Silent_p.A1474A|TTN_uc010zfi.1_Silent_p.A1474A|TTN_uc010zfj.1_Silent_p.A1474A|TTN_uc002unb.2_Silent_p.A1520A|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1520							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTGGGTGTGGCAGGGACAA	0.388			NA											14	44					3.27435e-08	3.60547e-08	0.00245	1	0
SDPR	8436	broad.mit.edu	37	2	192701335	192701335	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:192701335G>A	uc002utb.2	-	2	922	c.592C>T	c.(592-594)CAC>TAC	p.H198Y		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	198						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TCCACGGTGTGCAGGGTTTCC	0.547			NA											13	38					0	0	0.006122	0	0
AOX1	316	broad.mit.edu	37	2	201477456	201477456	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:201477456A>G	uc002uvx.2	+	14	1489	c.1388A>G	c.(1387-1389)TAT>TGT	p.Y463C	AOX1_uc010zhf.1_Missense_Mutation_p.Y19C|AOX1_uc010fsu.2_Translation_Start_Site	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	463					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	TGCATCTCATATGGAGGCGTT	0.468			NA											19	49					0	0	0.001882	0	0
NBEAL1	65065	broad.mit.edu	37	2	204078335	204078335	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:204078335G>A	uc002uzt.3	+	54	8275	c.7942G>A	c.(7942-7944)GAT>AAT	p.D2648N	NBEAL1_uc002uzs.3_Missense_Mutation_p.D1289N|NBEAL1_uc002uzu.2_Missense_Mutation_p.D143N	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2648							binding			ovary(1)|skin(1)	2						AGGTTTAGAAGATGGCAAATT	0.423			NA											49	94					0	0	0.00361	0	0
DYTN	391475	broad.mit.edu	37	2	207527684	207527684	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:207527684C>G	uc002vbr.1	-	11	1693	c.1576G>C	c.(1576-1578)GAA>CAA	p.E526Q		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	526	Potential.|Poly-Glu.					plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		TCTTGCAGTTCCTCTTCCTCC	0.453			NA											38	106					0	0	0.002852	0	0
FN1	2335	broad.mit.edu	37	2	216286823	216286823	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:216286823G>A	uc002vfa.2	-	10	1803	c.1537C>T	c.(1537-1539)CAG>TAG	p.Q513*	FN1_uc002vfb.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfc.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfd.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfe.2_Nonsense_Mutation_p.Q513*|FN1_uc002vff.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfg.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfh.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfi.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfj.2_Nonsense_Mutation_p.Q513*|FN1_uc002vfl.2_Nonsense_Mutation_p.Q513*	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	513	Collagen-binding.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTCGAAGCTGCGAGTAGGCA	0.448			NA											50	111					0	0	0.00361	0	0
VIL1	7429	broad.mit.edu	37	2	219299291	219299291	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:219299291A>G	uc002via.2	+	14	1608	c.1543A>G	c.(1543-1545)ACA>GCA	p.T515A	VIL1_uc010zke.1_Missense_Mutation_p.T204A|VIL1_uc002vib.2_Missense_Mutation_p.T515A	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	515	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGGGCCCTCCACACGGCTGTT	0.557			NA											28	75					0	0	0.002836	0	0
USP37	57695	broad.mit.edu	37	2	219418306	219418306	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:219418306C>G	uc002vie.2	-	5	751	c.298G>C	c.(298-300)GAT>CAT	p.D100H	USP37_uc010fvs.1_Missense_Mutation_p.D100H|USP37_uc010zkf.1_Missense_Mutation_p.D100H|USP37_uc002vif.2_Missense_Mutation_p.D100H|USP37_uc002vig.2_Missense_Mutation_p.D28H|USP37_uc010zkg.1_Missense_Mutation_p.D100H	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	100	D-box 2.				ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		TGGACTGCATCTAGAAACAAC	0.413			NA											16	37					0	0	0.008871	0	0
CCDC108	255101	broad.mit.edu	37	2	219870856	219870856	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:219870856G>A	uc002vjl.1	-	31	4893	c.4809C>T	c.(4807-4809)TGC>TGT	p.C1603C		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1603						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTGGCTGGGGGCAGGGCCAGG	0.617			NA											27	88					0	0	0.002445	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446730	226446730	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:226446730G>C	uc002voe.2	+	4	772	c.597G>C	c.(595-597)CCG>CCC	p.P199P	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	199										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		AGCGAAATCCGAACACTCAGC	0.507			NA											55	105					0	0	0.00361	0	0
CHRND	1144	broad.mit.edu	37	2	233399876	233399876	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:233399876G>A	uc002vsw.2	+	12	1412	c.1408G>A	c.(1408-1410)GAC>AAC	p.D470N	CHRND_uc010zmg.1_Missense_Mutation_p.D455N|CHRND_uc010fyc.2_Missense_Mutation_p.D343N|CHRND_uc010zmh.1_Missense_Mutation_p.D276N	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	470	Cytoplasmic (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		CCGCACAGTGGACCGCCTCTG	0.627			NA											38	114					0	0	0.00874	0	0
EIF4E2	9470	broad.mit.edu	37	2	233421133	233421133	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:233421133G>A	uc002vta.2	+	2	106	c.28G>A	c.(28-30)GAT>AAT	p.D10N	EIF4E2_uc002vtb.1_Missense_Mutation_p.D10N|EIF4E2_uc002vsz.2_Missense_Mutation_p.D10N|EIF4E2_uc010zmi.1_Missense_Mutation_p.D10N	NM_004846	NP_004837	O60573	IF4E2_HUMAN	eukaryotic translation initiation factor 4E	10				MNNKFDALKDDDSGDHDQNEENSTQKD -> MMTVGTMIRM KKTAHRKI (in Ref. 3; AAC39871).	regulation of translation	cytoplasm|mRNA cap binding complex	RNA cap binding|translation initiation factor activity|ubiquitin protein ligase binding				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;2.3e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000912)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CAGTTTGAAAGATGATGACAG	0.413			NA											6	22					0	0	0.001984	0	0
DTYMK	1841	broad.mit.edu	37	2	242626193	242626193	+	Silent	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr2:242626193C>A	uc002wbz.1	-	1	35	c.6G>T	c.(4-6)GCG>GCT	p.A2A	DTYMK_uc010zpa.1_Silent_p.A2A|DTYMK_uc010zpb.1_RNA|DTYMK_uc002wca.1_RNA	NM_012145	NP_036277	P23919	KTHY_HUMAN	deoxythymidylate kinase (thymidylate kinase)	2					cell cycle|cell proliferation|nucleobase, nucleoside and nucleotide interconversion	cytosol	ATP binding|nucleoside phosphate kinase activity|thymidylate kinase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.6e-33)|all cancers(36;3.57e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.23e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		CGCGCCGGGCCGCCATGACTG	0.706			NA											4	9					0.00024832	0.000259281	0.009096	1	0
SIRPB2	284759	broad.mit.edu	37	20	1456860	1456860	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:1456860G>A	uc002wfg.2	-	5	1209	c.981C>T	c.(979-981)GGC>GGT	p.G327G	SIRPB2_uc002wfh.3_Silent_p.G229G	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	327	Cytoplasmic (Potential).					integral to membrane					0						CTCCTGCTGGGCCTGTGGTCT	0.607			NA											37	100					0	0	0.003214	0	0
SIRPG	55423	broad.mit.edu	37	20	1616208	1616208	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:1616208C>A	uc002wfm.1	-	4	851	c.786G>T	c.(784-786)AGG>AGT	p.R262S	SIRPG_uc002wfn.1_Intron|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	262	Extracellular (Potential).|Ig-like C1-type 2.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GGTTCCCCACCCTCATGGGCT	0.552			NA											25	42					2.36697e-06	2.5292e-06	0.007291	1	0
HAO1	54363	broad.mit.edu	37	20	7866418	7866418	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:7866418C>A	uc002wmw.1	-	6	931	c.907G>T	c.(907-909)GCT>TCT	p.A303S	HAO1_uc010gbu.2_Missense_Mutation_p.A303S	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	303	FMN hydroxy acid dehydrogenase.|FMN (By similarity).				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						AGAGCCAGAGCTTTCAGAACA	0.498			NA											48	102					7.50695e-29	9.66186e-29	0.00361	1	0
JAG1	182	broad.mit.edu	37	20	10639247	10639247	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:10639247T>C	uc002wnw.2	-	4	1079	c.563A>G	c.(562-564)GAT>GGT	p.D188G		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	188	Extracellular (Potential).|DSL.				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						GTAGTAGTCATCACAGGTCAC	0.532			NA							Alagille_Syndrome				33	76					0	0	0.004289	0	0
MACROD2	140733	broad.mit.edu	37	20	14665577	14665577	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:14665577C>G	uc002wou.2	+	5	654	c.390C>G	c.(388-390)ATC>ATG	p.I130M	MACROD2_uc002wot.2_Missense_Mutation_p.I130M|MACROD2_uc002wox.2_RNA	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	130	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				ATGCAAAAATCACATGTGGCT	0.428			NA											44	85					0	0	0.00361	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18165313	18165313	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:18165313C>G	uc002wqj.2	+	10	2674	c.2052C>G	c.(2050-2052)ATC>ATG	p.I684M	CSRP2BP_uc002wqk.2_Missense_Mutation_p.I556M|CSRP2BP_uc010zru.1_Missense_Mutation_p.I555M	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	684	N-acetyltransferase.				histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						AAAAAGTCATCATTGCCTTTG	0.413			NA											28	70					0	0	0.00632	0	0
C20orf185	359710	broad.mit.edu	37	20	31647283	31647283	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:31647283C>T	uc002wym.1	+	3	381	c.381C>T	c.(379-381)TGC>TGT	p.C127C		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	127	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						GCATGCATTGCTCTGGGTGAG	0.602			NA											7	22					0	0	0.001984	0	0
C20orf185	359710	broad.mit.edu	37	20	31647285	31647285	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:31647285C>G	uc002wym.1	+	3	383	c.383C>G	c.(382-384)TCC>TGC	p.S128C		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	128	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						ATGCATTGCTCTGGGTGAGTG	0.602			NA											7	22					0	0	0.001984	0	0
E2F1	1869	broad.mit.edu	37	20	32264541	32264541	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:32264541G>C	uc002wzu.3	-	7	1451	c.1311C>G	c.(1309-1311)TTC>TTG	p.F437L	NECAB3_uc002wzm.3_5'Flank|NECAB3_uc002wzn.3_5'Flank|NECAB3_uc002wzo.3_5'Flank|NECAB3_uc002wzp.3_5'Flank|NECAB3_uc002wzq.3_5'Flank|NECAB3_uc002wzr.3_5'Flank|NECAB3_uc010geo.2_5'Flank	NM_005225	NP_005216	Q01094	E2F1_HUMAN	E2F transcription factor 1	437	Transactivation.				apoptosis|cell proliferation|G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|mRNA stabilization|negative regulation of transcription involved in G1/S phase of mitotic cell cycle|positive regulation of fibroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle	mitochondrion|Rb-E2F complex	sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding				0						AGCCCTGTCAGAAATCCAGGG	0.627			NA											7	15					0	0	0.004482	0	0
MYH7B	57644	broad.mit.edu	37	20	33588488	33588488	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:33588488C>T	uc002xbi.1	+	37	5392	c.5300C>T	c.(5299-5301)TCG>TTG	p.S1767L		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1725	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CTTCTGCATTCGCAGGTGGGG	0.662			NA											4	9					0	0	0.001168	0	0
KIAA0406	9675	broad.mit.edu	37	20	36625251	36625251	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:36625251G>A	uc002xhl.2	-	7	3107	c.2898C>T	c.(2896-2898)ATC>ATT	p.I966I	KIAA0406_uc002xhm.2_Silent_p.I966I	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	966							binding				0		Myeloproliferative disorder(115;0.00874)				CCCTGGCACTGATGGGGGCCT	0.597			NA											53	141					0	0	0.00361	0	0
PIGT	51604	broad.mit.edu	37	20	44049006	44049006	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:44049006C>T	uc002xoh.1	+	7	877	c.804C>T	c.(802-804)CTC>CTT	p.L268L	PIGT_uc010ghb.1_Silent_p.L258L|PIGT_uc010zwt.1_RNA|PIGT_uc010ghd.1_Silent_p.L175L|PIGT_uc010ghc.1_RNA|PIGT_uc010ghe.1_Silent_p.L231L|PIGT_uc010ghf.1_Silent_p.L221L|PIGT_uc002xoj.1_Silent_p.L268L|PIGT_uc002xok.1_Silent_p.L233L|PIGT_uc010zwu.1_Silent_p.L6L|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_Silent_p.L6L|PIGT_uc010zww.1_Silent_p.L212L|PIGT_uc010zwx.1_Silent_p.L103L|PIGT_uc010zwy.1_Silent_p.L166L|PIGT_uc010zwz.1_Silent_p.L6L|PIGT_uc010zxa.1_Silent_p.L106L|PIGT_uc002xol.1_Silent_p.L124L|PIGT_uc010zxb.1_5'UTR	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	268	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				CCCGAACCCTCACGGAGCCCT	0.592			NA											14	14					0	0	0.007413	0	0
SULF2	55959	broad.mit.edu	37	20	46290572	46290572	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:46290572C>T	uc002xto.2	-	18	2769	c.2439G>A	c.(2437-2439)CTG>CTA	p.L813L	SULF2_uc002xtr.2_Silent_p.L813L|SULF2_uc002xtq.2_Silent_p.L813L|SULF2_uc010zyd.1_Silent_p.L92L	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	813					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						TGCAGCTCCTCAGCTCCATGA	0.547			NA											31	137					0	0	0.002836	0	0
DDX27	55661	broad.mit.edu	37	20	47835954	47835954	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:47835954T>G	uc002xuh.2	+	1	123	c.62T>G	c.(61-63)GTG>GGG	p.V21G		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	21						nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCGCAGGCTGTGCTCGCTTCC	0.622			NA											20	35					0	0	0.010504	0	0
KCNB1	3745	broad.mit.edu	37	20	47990541	47990541	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:47990541G>A	uc002xur.1	-	2	1720	c.1556C>T	c.(1555-1557)TCT>TTT	p.S519F	KCNB1_uc002xus.1_Missense_Mutation_p.S519F	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	519	Poly-Ser.|Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CTGAGGACTAGAAGACGATCT	0.468			NA											181	194					0	0	0.00361	0	0
C20orf85	128602	broad.mit.edu	37	20	56728612	56728612	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:56728612G>A	uc002xyv.2	+	2	119	c.81G>A	c.(79-81)CTG>CTA	p.L27L		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	27										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			AATACCGTCTGAAGGCTGAAT	0.473			NA											105	115					0	0	0.00361	0	0
C20orf20	55257	broad.mit.edu	37	20	61428022	61428022	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:61428022C>T	uc002ydi.2	+	1	218	c.147C>T	c.(145-147)GTC>GTT	p.V49V		NM_018270	NP_060740	Q9NV56	MRGBP_HUMAN	MRG-binding protein	49					chromatin modification|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	H4/H2A histone acetyltransferase complex					0	Breast(26;3.65e-08)					ACAAGCCCGTCGGTGAGCGCC	0.517			NA											6	7					0	0	0.001984	0	0
DIDO1	11083	broad.mit.edu	37	20	61528345	61528345	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr20:61528345G>A	uc002ydr.1	-	7	1856	c.1592C>T	c.(1591-1593)ACG>ATG	p.T531M	DIDO1_uc002yds.1_Missense_Mutation_p.T531M|DIDO1_uc002ydt.1_Missense_Mutation_p.T531M|DIDO1_uc002ydu.1_Missense_Mutation_p.T531M	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	531					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GTCTTCCTTCGTGGCTACAAA	0.562	Melanoma(25;381 482 3385 5362 7955 17159 17174 40604 47095)		NA											10	18					0	0	0.001368	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19698834	19698834	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr21:19698834C>A	uc002ykw.2	-	16	1867	c.1836G>T	c.(1834-1836)ATG>ATT	p.M612I		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	612	Extracellular (Potential).|CUB 2.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GAAGCACAGTCATTCTGTTGG	0.458			NA											41	77					5.44703e-19	6.74488e-19	0.009718	1	0
CCT8	10694	broad.mit.edu	37	21	30435737	30435737	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr21:30435737T>A	uc002ynb.2	-	8	976	c.877A>T	c.(877-879)ACA>TCA	p.T293S	CCT8_uc002ymz.2_5'Flank|CCT8_uc011acp.1_Missense_Mutation_p.T274S|CCT8_uc002yna.2_Missense_Mutation_p.T242S|CCT8_uc002ync.2_Missense_Mutation_p.T292S|CCT8_uc010glm.2_Missense_Mutation_p.T234S|CCT8_uc011acq.1_Missense_Mutation_p.T220S	NM_006585	NP_006576	P50990	TCPQ_HUMAN	chaperonin containing TCP1, subunit 8 (theta)	293					'de novo' posttranslational protein folding	aggresome|cytosol|intermediate filament cytoskeleton|microtubule organizing center	ATP binding|ATPase activity, coupled|unfolded protein binding				0						TTGCCACCTGTTACTACGACA	0.353			NA											30	53					0	0	0.004878	0	0
KRTAP13-1	140258	broad.mit.edu	37	21	31768547	31768547	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr21:31768547T>A	uc002yoa.2	+	1	156	c.143T>A	c.(142-144)CTG>CAG	p.L48Q		NM_181599	NP_853630	Q8IUC0	KR131_HUMAN	keratin associated protein 13-1	48	1.|5 X 10 AA approximate repeats.					intermediate filament				ovary(1)	1						ACGTGCCAGCTGGGTTCCTCT	0.612			NA											22	59					0	0	0.00278	0	0
IGSF5	150084	broad.mit.edu	37	21	41151172	41151172	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr21:41151172C>T	uc002yyo.2	+	5	977	c.874C>T	c.(874-876)CGT>TGT	p.R292C		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	292	Cytoplasmic (Potential).|Cys-rich.					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				ctgctgccgccgtcgttgttg	0.264			NA											17	27					0	0	0.004007	0	0
DSCAM	1826	broad.mit.edu	37	21	41450791	41450791	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr21:41450791C>G	uc002yyq.1	-	26	4986	c.4534G>C	c.(4534-4536)GAG>CAG	p.E1512Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1512	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGCCTGTACTCTAGTGTGAAG	0.552	Melanoma(134;970 1778 1785 21664 32388)		NA											13	26					0	0	0.003163	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032559	46032559	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr21:46032559C>T	uc002zfo.1	+	1	564	c.542C>T	c.(541-543)TCT>TTT	p.S181F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	181	19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						CCTGTCTGCTCTGGGGCTTCC	0.602			NA											97	257					0	0	0.00361	0	0
MCM3AP	8888	broad.mit.edu	37	21	47678951	47678951	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr21:47678951G>A	uc002zir.1	-	16	3672	c.3636C>T	c.(3634-3636)GTC>GTT	p.V1212V	MCM3AP_uc002zip.1_5'UTR|MCM3AP_uc002ziq.1_Silent_p.V139V	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1212					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					AGTGGGCACAGACATCCTCAC	0.537			NA											31	84					0	0	0.002096	0	0
ZNF280B	140883	broad.mit.edu	37	22	22842707	22842708	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:22842707_22842708CC>AA	uc002zwc.1	-	4	1792_1793	c.1016_1017GG>TT	c.(1015-1017)TGG>TTT	p.W339F	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	339					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TGTGGTTTTCCCAGCTGTCGTT	0.48			NA											78	33					0	0	0.004672	0	0
CHEK2	11200	broad.mit.edu	37	22	29091840	29091841	+	Missense_Mutation	DNP	TG	TG	CA	rs142470496	byFrequency	TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:29091840_29091841TG>CA	uc003adu.1	-	11	1188_1189	c.1116_1117CA>TG	c.(1114-1119)TCCAAG>TCTGAG	p.K373E	CHEK2_uc003ads.1_Missense_Mutation_p.K152E|CHEK2_uc010gvh.1_Missense_Mutation_p.K282E|CHEK2_uc010gvi.1_Intron|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Missense_Mutation_p.K416E|CHEK2_uc003adv.1_Missense_Mutation_p.K344E|CHEK2_uc003adw.1_Missense_Mutation_p.K373E|CHEK2_uc003adx.1_Missense_Mutation_p.K152E|CHEK2_uc003ady.1_Missense_Mutation_p.K373E|CHEK2_uc003adz.1_Missense_Mutation_p.K177E	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	373	Protein kinase.				cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity	p.K373E(2)|p.S372S(1)		central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						CCCAAAATCTTGGAGTGCCCAA	0.416			NA	F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				10	71					0	0	0.004672	0	0
APOL5	80831	broad.mit.edu	37	22	36122339	36122339	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:36122339C>A	uc003aof.2	+	3	224	c.224C>A	c.(223-225)TCC>TAC	p.S75Y		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	75					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						GGTATGCTGTCCTACTTTCTG	0.418			NA											33	22					4.34086e-07	4.6969e-07	0.005524	1	0
FAM109B	150368	broad.mit.edu	37	22	42473379	42473379	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:42473379G>C	uc003bbz.2	+	3	269	c.82G>C	c.(82-84)GGG>CGG	p.G28R	C22orf32_uc003bca.2_5'Flank	NM_001002034	NP_001002034	Q6ICB4	SESQ2_HUMAN	hypothetical protein LOC150368	28	PH.				endosome organization|receptor recycling|retrograde transport, endosome to Golgi	clathrin-coated vesicle|early endosome|recycling endosome|trans-Golgi network	protein homodimerization activity				0						GCGCACCTGGGGGGGCCCAGG	0.637			NA											73	46					0	0	0.00361	0	0
CYP2D6	1565	broad.mit.edu	37	22	42524885	42524885	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:42524885G>A	uc003bce.2	-	4	657	c.567C>T	c.(565-567)CTC>CTT	p.L189L	uc003bcd.1_Intron|CYP2D6_uc010gyu.2_5'UTR|CYP2D6_uc003bcf.2_Silent_p.L138L	NM_000106	NP_000097	Q6NWU0	Q6NWU0_HUMAN	cytochrome P450, family 2, subfamily D,	189							electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen			breast(1)|skin(1)	2						GCCCGCAGGTGAGGGAGGCGA	0.662			NA											4	0					0	0	0.001168	0	0
CYP2D6	1565	broad.mit.edu	37	22	42525130	42525130	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:42525130G>A	uc003bce.2	-	3	500	c.410C>T	c.(409-411)TCC>TTC	p.S137F	uc003bcd.1_Intron|CYP2D6_uc010gyu.2_Intron|CYP2D6_uc003bcf.2_Intron	NM_000106	NP_000097	Q6NWU0	Q6NWU0_HUMAN	cytochrome P450, family 2, subfamily D,	137							electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen			breast(1)|skin(1)	2						GCGCAAGGTGGAGACGGAGAA	0.687			NA											16	40					0	0	0.004007	0	0
GRAMD4	23151	broad.mit.edu	37	22	47022849	47022849	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:47022849G>C	uc003bhx.2	+	1	192	c.153G>C	c.(151-153)CTG>CTC	p.L51L		NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	51					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		GCGAGGAGCTGAGGGACCCTG	0.652			NA											6	84					0	0	0.001168	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50667893	50667893	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:50667893C>G	uc003bkb.1	-	4	1742	c.1230G>C	c.(1228-1230)CTG>CTC	p.L410L	TUBGCP6_uc010har.1_Silent_p.L410L|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	410					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		AGAAATGACTCAGGCGCGTGT	0.587			NA											10	23					0	0	0.001368	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728234	50728234	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:50728234C>T	uc003bkv.3	-	3	886	c.780G>A	c.(778-780)CTG>CTA	p.L260L		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	260	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGTCCATCTCCAGGTAGGAGT	0.642			NA											29	42					0	0	0.004878	0	0
C3orf31	132001	broad.mit.edu	37	3	11851124	11851124	+	Missense_Mutation	SNP	C	C	G	rs140106641	byFrequency	TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:11851124C>G	uc003bwh.2	-	6	983	c.741G>C	c.(739-741)CAG>CAC	p.Q247H	C3orf31_uc003bwj.2_Missense_Mutation_p.Q247H|C3orf31_uc003bwi.2_RNA|C3orf31_uc011auo.1_Missense_Mutation_p.Q247H	NM_138807	NP_620162	Q96BW9	MMP37_HUMAN	MMP37-like protein, mitochondrial precursor	247					protein import into mitochondrial matrix	extrinsic to mitochondrial inner membrane					0						ATGTCATCAGCTGAGTGAACT	0.398			NA											20	27					0	0	0.004656	0	0
SATB1	6304	broad.mit.edu	37	3	18419677	18419677	+	Silent	SNP	T	T	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:18419677T>G	uc003cbh.2	-	9	3295	c.1560A>C	c.(1558-1560)GCA>GCC	p.A520A	SATB1_uc003cbi.2_Silent_p.A520A|SATB1_uc003cbj.2_Silent_p.A520A	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	520	CUT 2.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						TTTTGGTTGCTGCAACCTTTG	0.388			NA											34	46					0	0	0.00361	0	0
TRANK1	9881	broad.mit.edu	37	3	36896758	36896758	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:36896758G>A	uc003cgj.2	-	3	2975	c.2673C>T	c.(2671-2673)TTC>TTT	p.F891F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1441					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGGCATAATGGAACAGAGAGC	0.537			NA											29	33					0	0	0.007291	0	0
XIRP1	165904	broad.mit.edu	37	3	39226540	39226540	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:39226540C>T	uc003cjk.1	-	2	4618	c.4397G>A	c.(4396-4398)AGA>AAA	p.R1466K	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.R149K	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1466	Potential.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TTTCTGGTTTCTTTGCAGACT	0.637			NA											32	37					0	0	0.002836	0	0
CELSR3	1951	broad.mit.edu	37	3	48688384	48688384	+	Missense_Mutation	SNP	C	C	A	rs2171560		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:48688384C>A	uc003cul.2	-	15	6592	c.6311G>T	c.(6310-6312)GGC>GTC	p.G2104V	CELSR3_uc003cuf.1_Missense_Mutation_p.G2174V|CELSR3_uc010hkg.2_Missense_Mutation_p.G82V	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2104	Extracellular (Potential).|Laminin EGF-like.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCACTGGCGGCCAAGGGCTCC	0.662			NA											42	34					2.43468e-25	3.08723e-25	0.00361	1	0
SEMA3F	6405	broad.mit.edu	37	3	50223354	50223354	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:50223354C>T	uc003cyj.2	+	16	1818	c.1620C>T	c.(1618-1620)GTC>GTT	p.V540V	SEMA3F_uc003cyk.2_Silent_p.V509V	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	540	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		CCGTGGGTGTCACACACCTGA	0.642			NA											34	67					0	0	0.00874	0	0
POC1A	25886	broad.mit.edu	37	3	52130587	52130587	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:52130587G>C	uc003dcu.2	-	10	1441	c.1123C>G	c.(1123-1125)CAG>GAG	p.Q375E	POC1A_uc003dcv.2_Missense_Mutation_p.Q337E|POC1A_uc003dcw.2_Intron	NM_015426	NP_056241	Q8NBT0	POC1A_HUMAN	WD repeat domain 51A isoform 1	375	Potential.					centriole|microtubule basal body					0						TGGCCTACCTGAGTGAGGACA	0.567			NA											71	71					0	0	0.00361	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64601146	64601146	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:64601146C>T	uc003dmg.2	-	21	3072	c.3040G>A	c.(3040-3042)GAC>AAC	p.D1014N	ADAMTS9_uc011bfo.1_Missense_Mutation_p.D986N|ADAMTS9_uc003dmh.1_Missense_Mutation_p.D843N|ADAMTS9_uc003dmk.1_Missense_Mutation_p.D1014N|ADAMTS9_uc011bfp.1_5'UTR	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1014	TSP type-1 4.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GTCCCACCGTCACAGCTTTTT	0.403			NA											20	13					0	0	0.00333	0	0
PDZRN3	23024	broad.mit.edu	37	3	73433423	73433423	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:73433423C>A	uc003dpl.1	-	10	2390	c.2294G>T	c.(2293-2295)CGC>CTC	p.R765L	PDZRN3_uc011bgh.1_Missense_Mutation_p.R422L|PDZRN3_uc010hoe.1_Missense_Mutation_p.R463L|PDZRN3_uc011bgf.1_Missense_Mutation_p.R482L|PDZRN3_uc011bgg.1_Missense_Mutation_p.R485L	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	765							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		CGGGGTGCTGCGGCAGCTCTC	0.647			NA											10	18					4.36969e-10	4.93028e-10	0.001855	1	0
ZPLD1	131368	broad.mit.edu	37	3	102187849	102187849	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:102187849G>A	uc003dvs.1	+	15	1685	c.803G>A	c.(802-804)CGA>CAA	p.R268Q	ZPLD1_uc003dvt.1_Missense_Mutation_p.R284Q|ZPLD1_uc011bhg.1_Missense_Mutation_p.R268Q	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	268	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						GAGAATGGCCGAAGCCAGCGG	0.478			NA											14	60					0	0	0.004007	0	0
CD47	961	broad.mit.edu	37	3	107798905	107798905	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:107798905G>C	uc003dwt.1	-	2	513	c.333C>G	c.(331-333)AAC>AAG	p.N111K	CD47_uc003dwu.1_Missense_Mutation_p.N111K|CD47_uc003dwv.1_Missense_Mutation_p.N111K|CD47_uc003dww.1_Missense_Mutation_p.N111K	NM_001777	NP_001768	Q08722	CD47_HUMAN	CD47 antigen isoform 1 precursor	111	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|integrin-mediated signaling pathway|leukocyte migration|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to plasma membrane	protein binding|thrombospondin receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(3;0.0191)|Epithelial(53;0.118)			CACAAGTGTAGTTTCCTGTGT	0.363			NA											51	190					0	0	0.00361	0	0
CD47	961	broad.mit.edu	37	3	107798924	107798924	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:107798924G>C	uc003dwt.1	-	2	494	c.314C>G	c.(313-315)GCT>GGT	p.A105G	CD47_uc003dwu.1_Missense_Mutation_p.A105G|CD47_uc003dwv.1_Missense_Mutation_p.A105G|CD47_uc003dww.1_Missense_Mutation_p.A105G	NM_001777	NP_001768	Q08722	CD47_HUMAN	CD47 antigen isoform 1 precursor	105	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|integrin-mediated signaling pathway|leukocyte migration|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to plasma membrane	protein binding|thrombospondin receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(3;0.0191)|Epithelial(53;0.118)			GTGTGAGACAGCATCACTCTT	0.393			NA											52	185					0	0	0.00361	0	0
MYH15	22989	broad.mit.edu	37	3	108129526	108129526	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:108129526G>C	uc003dxa.1	-	32	4516	c.4459C>G	c.(4459-4461)CAG>GAG	p.Q1487E		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1487	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTGAGAGCCTGAACTTCCTTC	0.572			NA											14	74					0	0	0.004007	0	0
DZIP3	9666	broad.mit.edu	37	3	108355516	108355516	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:108355516G>T	uc003dxd.2	+	11	1394	c.972G>T	c.(970-972)AGG>AGT	p.R324S	DZIP3_uc003dxf.1_Missense_Mutation_p.R324S|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Missense_Mutation_p.R324S|DZIP3_uc003dxg.1_Missense_Mutation_p.R47S	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	324					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						ACATGGTAAGGATGCTGCAAT	0.274			NA											46	143					3.63617e-18	4.45431e-18	0.00361	1	0
TMPRSS7	344805	broad.mit.edu	37	3	111769520	111769520	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:111769520T>A	uc010hqb.2	+	7	885	c.715T>A	c.(715-717)TGT>AGT	p.C239S	TMPRSS7_uc011bhr.1_Missense_Mutation_p.C94S	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	365	Extracellular (Potential).|CUB 2.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						TTTTCCAGAGTGTGAAAACAC	0.398			NA											81	258					0	0	0.00361	0	0
BOC	91653	broad.mit.edu	37	3	112987214	112987214	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:112987214G>C	uc003dzx.2	+	5	1066	c.445G>C	c.(445-447)GCC>CCC	p.A149P	BOC_uc010hqi.2_Missense_Mutation_p.A149P|BOC_uc003dzy.2_Missense_Mutation_p.A149P|BOC_uc003dzz.2_Missense_Mutation_p.A149P|BOC_uc003eab.2_5'Flank	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	149	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			AGCAGTCATTGCCTGCCACCT	0.572			NA											26	23					0	0	0.009535	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375045	113375045	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:113375045G>A	uc003eam.2	-	7	5895	c.5484C>T	c.(5482-5484)CTC>CTT	p.L1828L	KIAA2018_uc003eal.2_Silent_p.L1772L	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1828					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						CCTGATCACTGAGGTGAGGGG	0.468			NA											43	143					0	0	0.003214	0	0
C3orf30	152405	broad.mit.edu	37	3	118867070	118867070	+	Missense_Mutation	SNP	G	G	C	rs138537972		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:118867070G>C	uc003ecb.1	+	2	1482	c.1442G>C	c.(1441-1443)CGC>CCC	p.R481P	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.R481P	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	481										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		TATCATATACGCAATCAAACT	0.368			NA											55	49					0	0	0.00361	0	0
UPK1B	7348	broad.mit.edu	37	3	118909142	118909142	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:118909142C>T	uc003ecc.2	+	4	410	c.321C>T	c.(319-321)ATC>ATT	p.I107I	UPK1B_uc011bix.1_Silent_p.I27I|UPK1B_uc003ecd.2_Silent_p.I107I	NM_006952	NP_008883	O75841	UPK1B_HUMAN	uroplakin 1B	107	Helical; (Potential).				epithelial cell differentiation	integral to membrane	structural molecule activity				0				GBM - Glioblastoma multiforme(114;0.222)		CATCTTGTATCACAGCAGCAA	0.269			NA											85	117					0	0	0.00361	0	0
TMEM39A	55254	broad.mit.edu	37	3	119180904	119180904	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:119180904C>G	uc003eck.1	-	2	381	c.18G>C	c.(16-18)AGG>AGC	p.R6S	TMEM39A_uc003ecl.1_5'UTR	NM_018266	NP_060736	Q9NV64	TM39A_HUMAN	transmembrane protein 39A	6						integral to membrane				ovary(1)|breast(1)	2				GBM - Glioblastoma multiforme(114;0.244)		GACTAGGGCCCCTCCTTCCAC	0.522			NA											6	46					0	0	0.001984	0	0
POLQ	10721	broad.mit.edu	37	3	121264695	121264695	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:121264695C>T	uc003eee.3	-	1	159	c.30G>A	c.(28-30)CGG>CGA	p.R10R		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	10					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CTGAACGCCGCCGTTTCCCAC	0.647	Pancreas(152;907 1925 26081 31236 36904)		NA						DNA_polymerases_(catalytic_subunits)					9	35					0	0	0.008291	0	0
IQCB1	9657	broad.mit.edu	37	3	121547718	121547718	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:121547718C>G	uc010hre.1	-	3	305	c.90G>C	c.(88-90)TTG>TTC	p.L30F	IQCB1_uc003eek.2_Missense_Mutation_p.L30F|IQCB1_uc010hrf.1_RNA	NM_001023570	NP_001018864	Q15051	IQCB1_HUMAN	IQ motif containing B1 isoform a	30					cilium assembly|maintenance of organ identity|photoreceptor cell maintenance	centrosome|photoreceptor connecting cilium	calmodulin binding				0				GBM - Glioblastoma multiforme(114;0.0983)		CTTTTAACTTCAACAGTATAA	0.333			NA											5	69					0	0	0.000602	0	0
CASR	846	broad.mit.edu	37	3	122003742	122003742	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:122003742G>A	uc003eev.3	+	7	3313	c.2941G>A	c.(2941-2943)GAG>AAG	p.E981K	CASR_uc003eew.3_Missense_Mutation_p.E991K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	981	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GAGCTTTGATGAGCCTCAGAA	0.572			NA											18	68					0	0	0.006122	0	0
COPG	22820	broad.mit.edu	37	3	128973901	128973901	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:128973901C>T	uc003els.2	+	7	573	c.473C>T	c.(472-474)TCT>TTT	p.S158F	COPG_uc010htb.2_Missense_Mutation_p.S64F	NM_016128	NP_057212	Q9Y678	COPG_HUMAN	coatomer protein complex, subunit gamma 1	158					COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(3)|breast(1)	4						GTCTCCAGCTCTGCCCTCGTG	0.517			NA											19	62					0	0	0.002299	0	0
COL6A6	131873	broad.mit.edu	37	3	130284269	130284269	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:130284269C>A	uc010htl.2	+	3	1124	c.1093C>A	c.(1093-1095)CTG>ATG	p.L365M		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	365	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CATCTTCACCCTGGGCATAGA	0.572			NA											93	101					5.77035e-48	7.65659e-48	0.00361	1	0
TOPBP1	11073	broad.mit.edu	37	3	133362198	133362198	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:133362198G>C	uc003eps.2	-	12	1999	c.1867C>G	c.(1867-1869)CAG>GAG	p.Q623E		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	623	BRCT 4.				DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						AACAAAGTCTGATAGTCTATG	0.373	Ovarian(21;193 658 4424 15423 17362)		NA						Other_conserved_DNA_damage_response_genes					5	28					0	0	0.000602	0	0
PLSCR5	389158	broad.mit.edu	37	3	146307453	146307453	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:146307453G>C	uc003ewb.2	-	6	1768	c.764C>G	c.(763-765)GCC>GGC	p.A255G	PLSCR5_uc010hvb.2_Missense_Mutation_p.A243G|PLSCR5_uc010hvc.2_Missense_Mutation_p.A255G	NM_001085420	NP_001078889	A0PG75	PLS5_HUMAN	phospholipid scramblase family, member 5	255											0						GAGAAAACAGGCACCGATCAT	0.383			NA											19	69					0	0	0.001882	0	0
NMD3	51068	broad.mit.edu	37	3	160960298	160960298	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:160960298G>T	uc003feb.1	+	11	993	c.874G>T	c.(874-876)GCA>TCA	p.A292S	NMD3_uc003fec.2_Missense_Mutation_p.A292S|NMD3_uc003fed.1_Missense_Mutation_p.A292S|NMD3_uc010hwh.2_Missense_Mutation_p.A112S	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	292					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			ATTTTTAGTGGCAGATATTGA	0.333			NA											52	71					6.05568e-20	7.53938e-20	0.00361	1	0
SI	6476	broad.mit.edu	37	3	164767629	164767629	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:164767629G>A	uc003fei.2	-	14	1609	c.1547C>T	c.(1546-1548)TCA>TTA	p.S516L		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	516	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCCTTTTGTTGAACCTTGAAT	0.284			NA								HNSCC(35;0.089)			16	83					0	0	0.006122	0	0
SPATA16	83893	broad.mit.edu	37	3	172634193	172634193	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:172634193C>T	uc003fin.3	-	9	1575	c.1417G>A	c.(1417-1419)GAG>AAG	p.E473K		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	473					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TGGGACTGCTCCTTTACTCTC	0.463			NA											122	177					0	0	0.00361	0	0
PIK3CA	5290	broad.mit.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:178928079G>C	uc003fjk.2	+	8	1514	c.1357G>C	c.(1357-1359)GAA>CAA	p.E453Q		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	453	C2 PI3K-type.		E -> Q (in cancer; shows an increase in lipid kinase activity; may disrupt the interaction of the C2 PI3K-type domain with the iSH2 region of the p85 regulatory subunit).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E453K(5)|p.E453Q(1)|p.E453A(1)|p.P449_L455del(1)|p.G451_L456>V(1)|p.E453del(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCATGGATTAGAAGATTTGCT	0.348	Colon(199;1504 1750 3362 26421 31210 32040)		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			75	69					0	0	0.00361	0	0
USP13	8975	broad.mit.edu	37	3	179478938	179478938	+	Missense_Mutation	SNP	G	G	C	rs61733591		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:179478938G>C	uc003fkh.2	+	17	2068	c.1987G>C	c.(1987-1989)GAG>CAG	p.E663Q		NM_003940	NP_003931	Q92995	UBP13_HUMAN	ubiquitin thiolesterase 13	663	UBA 1.				ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(1)	1	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			GCAGCTGGCCGAGATGGGTTT	0.493			NA											40	135					0	0	0.00361	0	0
CCDC39	339829	broad.mit.edu	37	3	180334372	180334372	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:180334372C>T	uc010hxe.2	-	18	2633	c.2518G>A	c.(2518-2520)GAA>AAA	p.E840K	CCDC39_uc003fkn.2_RNA|TTC14_uc003fkm.2_Intron	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	840					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			ACTAACATTTCATCAATAACT	0.308			NA											14	11					0	0	0.004007	0	0
CCDC39	339829	broad.mit.edu	37	3	180378460	180378460	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:180378460C>A	uc010hxe.2	-	4	529	c.414G>T	c.(412-414)TGG>TGT	p.W138C	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	138					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CTTGCTGGTCCCAGTTCATTT	0.373			NA											10	11					3.07112e-06	3.26634e-06	0.000978	1	0
LIPH	200879	broad.mit.edu	37	3	185245369	185245369	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:185245369G>C	uc003fpm.2	-	4	641	c.531C>G	c.(529-531)CTC>CTG	p.L177L	LIPH_uc010hyh.2_Intron	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	177			Missing (in LAH2).		lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			CTGCAGGGTCGAGGCCTGGAA	0.547			NA											40	34					0	0	0.006999	0	0
PDE6B	5158	broad.mit.edu	37	4	649750	649750	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:649750G>T	uc003gap.2	+	7	1067	c.1014G>T	c.(1012-1014)TGG>TGT	p.W338C	PDE6B_uc003gao.3_Missense_Mutation_p.W338C|PDE6B_uc011buy.1_Missense_Mutation_p.W59C|uc003gaq.1_5'Flank	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	338	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CCGATCACTGGGCCCTGGCCA	0.652	GBM(71;463 1194 9848 25922 46834)		NA											33	92					1.03484e-13	1.20526e-13	0.005524	1	0
MYL5	4636	broad.mit.edu	37	4	673776	673776	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:673776G>T	uc003gav.2	+	4	366	c.261G>T	c.(259-261)ATG>ATT	p.M87I	MYL5_uc003gat.2_RNA|MYL5_uc003gau.2_RNA	NM_002477	NP_002468	Q02045	MYL5_HUMAN	myosin regulatory light chain 5	87					regulation of muscle contraction	muscle myosin complex	calcium ion binding|structural constituent of muscle				0						ACTTCACCATGTTTCTGAACC	0.502			NA											25	52					1.06801e-11	1.22518e-11	0.009535	1	0
KLHL5	51088	broad.mit.edu	37	4	39077583	39077583	+	Splice_Site	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:39077583A>G	uc003gts.2	+	2	597	c.522_splice	c.e2-2	p.R174_splice	KLHL5_uc003gtp.2_Splice_Site_p.R128_splice|KLHL5_uc003gtq.2_Splice_Site|KLHL5_uc003gtr.1_Splice_Site_p.R174_splice|KLHL5_uc003gtt.2_Intron	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1							cytoplasm|cytoskeleton	actin binding			ovary(1)	1						TTTTCTTTTCAGGACTTCCAA	0.323			NA											18	52					0	0	0.00278	0	0
NSUN7	79730	broad.mit.edu	37	4	40810350	40810350	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:40810350G>C	uc003gvj.3	+	12	2046	c.1551G>C	c.(1549-1551)GTG>GTC	p.V517V	NSUN7_uc003gvi.3_Nonstop_Mutation_p.*476S	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						CAGTGTCTGTGAATGATGTTT	0.413			NA											7	117					0	0	0.006214	0	0
GABRG1	2565	broad.mit.edu	37	4	46067385	46067385	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:46067385G>C	uc003gxb.2	-	4	690	c.538C>G	c.(538-540)CTA>GTA	p.L180V		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	180	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TATTACCTTAGAGTATACAGA	0.313			NA											16	30					0	0	0.004007	0	0
GABRB1	2560	broad.mit.edu	37	4	47427732	47427732	+	Silent	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:47427732C>A	uc003gxh.2	+	9	1496	c.1122C>A	c.(1120-1122)ATC>ATA	p.I374I	GABRB1_uc011bze.1_Silent_p.I304I	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	374	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CCCTGGAAATCCGGAATGAGA	0.562			NA											27	55					8.73648e-17	1.05144e-16	0.004289	1	0
FRYL	285527	broad.mit.edu	37	4	48611798	48611798	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:48611798G>C	uc003gyh.1	-	8	1059	c.454C>G	c.(454-456)CTA>GTA	p.L152V	FRYL_uc003gyk.2_Missense_Mutation_p.L152V	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						GCTAAGTTTAGAACTTCATGA	0.303			NA											4	29					0	0	0.001168	0	0
LRRC66	339977	broad.mit.edu	37	4	52860629	52860629	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:52860629C>A	uc003gzi.2	-	4	2572	c.2559G>T	c.(2557-2559)CAG>CAT	p.Q853H		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	853						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GTGGTGTTTGCTGTAAAACGT	0.398			NA											35	77					1.04594e-18	1.28818e-18	0.00623	1	0
PDCL2	132954	broad.mit.edu	37	4	56448305	56448305	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:56448305G>T	uc003hbb.2	-	2	209	c.106C>A	c.(106-108)CGT>AGT	p.R36S		NM_152401	NP_689614	Q8N4E4	PDCL2_HUMAN	phosducin-like 2	36											0	Lung NSC(11;0.00256)|Glioma(25;0.08)|all_epithelial(27;0.0863)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.69e-07)|Lung(4;1.03e-06)|Epithelial(7;0.00669)			TTCTGTAAACGTAAAACCATT	0.363			NA											8	40					0.00307968	0.00316741	0.00308	1	0
PAICS	10606	broad.mit.edu	37	4	57314715	57314715	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:57314715A>G	uc003hbs.1	+	5	756	c.525A>G	c.(523-525)ATA>ATG	p.I175M	PAICS_uc011cac.1_Missense_Mutation_p.I175M|PAICS_uc003hbt.1_Missense_Mutation_p.I182M|PAICS_uc003hbu.1_Missense_Mutation_p.I175M|PAICS_uc010ihd.1_Missense_Mutation_p.I176M	NM_006452	NP_006443	P22234	PUR6_HUMAN	phosphoribosylaminoimidazole carboxylase,	175	SAICAR synthetase.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|identical protein binding|phosphoribosylaminoimidazole carboxylase activity|phosphoribosylaminoimidazolesuccinocarboxamide synthase activity				0	Glioma(25;0.08)|all_neural(26;0.101)				L-Aspartic Acid(DB00128)	TATTTGAAATACTGGAGAAAT	0.383	GBM(53;429 1144 8755 40726)		NA											4	8					0	0	0.009096	0	0
LPHN3	23284	broad.mit.edu	37	4	62679579	62679579	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:62679579C>T	uc010ihh.2	+	6	1421	c.1248C>T	c.(1246-1248)GAC>GAT	p.D416D	LPHN3_uc003hcq.3_Silent_p.D416D|LPHN3_uc003hcs.1_Silent_p.D245D	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	416	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						ttcaccttgactctgagctag	0.139			NA											5	46					0	0	0.001984	0	0
UGT2B10	7365	broad.mit.edu	37	4	69870669	69870669	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:69870669C>A	uc011cao.1	-	9	1517	c.1381G>T	c.(1381-1383)GCT>TCT	p.A461S	UGT2B10_uc011can.1_Missense_Mutation_p.A377S			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	498	Helical; (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GCCACACAGGCCAGCAGGAAC	0.448	Melanoma(133;755 1763 25578 26334 46021)		NA											8	126					0.00307968	0.00316741	0.00308	1	0
SLC4A4	8671	broad.mit.edu	37	4	72215656	72215656	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:72215656A>G	uc003hfy.2	+	5	534	c.417A>G	c.(415-417)GAA>GAG	p.E139E	SLC4A4_uc010iic.2_Silent_p.E139E|SLC4A4_uc010iib.2_Silent_p.E139E|SLC4A4_uc003hfz.2_Silent_p.E139E|SLC4A4_uc003hgc.3_Silent_p.E95E|SLC4A4_uc003hga.2_Silent_p.E17E|SLC4A4_uc003hgb.3_Silent_p.E95E	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	139	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			AAAAAGTGGAACAGGGTGGGG	0.433			NA											24	51					0	0	0.007291	0	0
USO1	8615	broad.mit.edu	37	4	76726444	76726444	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:76726444G>C	uc003hiu.2	+	18	2452	c.2277G>C	c.(2275-2277)ATG>ATC	p.M759I	USO1_uc003hiv.2_Missense_Mutation_p.M601I|USO1_uc003hiw.2_Missense_Mutation_p.M594I	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	759	Potential.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGGACTCTATGATTGAAAATA	0.333			NA											5	7					0	0	0.001168	0	0
FRAS1	80144	broad.mit.edu	37	4	79350311	79350311	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:79350311C>T	uc003hlb.2	+	36	5214	c.4774C>T	c.(4774-4776)CAG>TAG	p.Q1592*	FRAS1_uc003hkw.2_Nonsense_Mutation_p.Q1592*|FRAS1_uc010ijj.1_Nonsense_Mutation_p.Q12*	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1591	CSPG 5.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCCCAGTGATCAGCAACTGCC	0.458			NA											3	12					0	0	0.004672	0	0
FRAS1	80144	broad.mit.edu	37	4	79436952	79436952	+	Splice_Site	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:79436952G>A	uc003hlb.2	+	66	10615	c.10175_splice	c.e66-1	p.E3392_splice		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1						cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTCCCTGGCAGAGGCAGGGTT	0.557			NA											19	47					0	0	0.007413	0	0
PRKG2	5593	broad.mit.edu	37	4	82126147	82126147	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:82126147C>A	uc003hmh.2	-	1	69	c.55G>T	c.(55-57)GGG>TGG	p.G19W	PRKG2_uc011cch.1_Missense_Mutation_p.G19W	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	19					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GTGAGGTTCCCAGAGTGTCCA	0.498			NA											14	24					1.5739e-10	1.78757e-10	0.004007	1	0
WDFY3	23001	broad.mit.edu	37	4	85686979	85686979	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:85686979C>A	uc003hpd.2	-	32	5580	c.5172G>T	c.(5170-5172)AAG>AAT	p.K1724N		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1724						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CAGTTCCAATCTTATTAGTTA	0.353			NA											19	62					5.26018e-13	6.10572e-13	0.001882	1	0
WDFY3	23001	broad.mit.edu	37	4	85729562	85729562	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:85729562T>A	uc003hpd.2	-	15	2762	c.2354A>T	c.(2353-2355)GAA>GTA	p.E785V		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	785						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGGGATCTGTTCTGCACGACT	0.468			NA											51	92					0	0	0.00361	0	0
C4orf37	285555	broad.mit.edu	37	4	98762043	98762043	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:98762043T>A	uc003htt.1	-	9	1175	c.1085A>T	c.(1084-1086)TAT>TTT	p.Y362F		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	362											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		GGACATCTCATATGATTTGTG	0.358			NA											26	32					0	0	0.00333	0	0
TBC1D9	23158	broad.mit.edu	37	4	141578791	141578791	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:141578791G>A	uc010ioj.2	-	12	2369	c.2097C>T	c.(2095-2097)TTC>TTT	p.F699F		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	699	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TTCCTTCATAGAAGAAACAGT	0.473			NA											45	44					0	0	0.00361	0	0
GK3P	2713	broad.mit.edu	37	4	166199383	166199383	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:166199383C>T	uc003ird.3	-	1	1793	c.1415G>A	c.(1414-1416)TGG>TAG	p.W472*	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						TTCAAGACTCCATACGTCGAC	0.502			NA											13	7					0	0	0.001855	0	0
GK3P	2713	broad.mit.edu	37	4	166199718	166199718	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:166199718G>T	uc003ird.3	-	1	1458	c.1080C>A	c.(1078-1080)TTC>TTA	p.F360L	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						ATGCTGGGACGAAGTAGCAGC	0.413			NA											36	32					4.00472e-15	4.73662e-15	0.00361	1	0
CDH9	1007	broad.mit.edu	37	5	26915822	26915822	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:26915822T>C	uc003jgs.1	-	3	608	c.439A>G	c.(439-441)ATT>GTT	p.I147V	CDH9_uc010iug.2_Missense_Mutation_p.I147V	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	147	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TGTATTTTAATGATAAATTCC	0.378	Melanoma(8;187 585 15745 40864 52829)		NA											4	217					0	0	0.000602	0	0
CDH9	1007	broad.mit.edu	37	5	26988330	26988331	+	Missense_Mutation	DNP	TA	TA	AT			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	TA	TA	-	-	TA	TA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:26988330_26988331TA>AT	uc003jgs.1	-	2	279_280	c.110_111TA>AT	c.(109-111)ATA>AAT	p.I37N	CDH9_uc010iug.2_Missense_Mutation_p.I37N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	37					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TCAGACCCGCTATCTTTTTGCT	0.391	Melanoma(8;187 585 15745 40864 52829)		NA											20	66					0	0	0.004672	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33881259	33881259	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:33881259C>A	uc003jia.1	-	2	617	c.454G>T	c.(454-456)GTT>TTT	p.V152F	ADAMTS12_uc010iuq.1_Missense_Mutation_p.V152F|ADAMTS12_uc003jib.1_Missense_Mutation_p.V152F	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	152					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GCCGTCCCAACTCTGGTGCCC	0.587			NA								HNSCC(64;0.19)			20	144					1.87028e-06	2.00158e-06	0.001882	1	0
C9	735	broad.mit.edu	37	5	39331837	39331837	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:39331837C>T	uc003jlv.3	-	5	645	c.556G>A	c.(556-558)GAT>AAT	p.D186N		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	186	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			GTGTTTCCATCCCGATCCCGG	0.438			NA											46	201					0	0	0.00361	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41012727	41012727	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:41012727C>T	uc003jmj.3	-	30	3583	c.3093G>A	c.(3091-3093)ATG>ATA	p.M1031I	HEATR7B2_uc003jmi.3_Missense_Mutation_p.M586I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1031	HEAT 11.						binding			ovary(6)|central_nervous_system(2)	8						GGACAGTGATCATCCATATGC	0.458			NA											18	65					0	0	0.006122	0	0
HCN1	348980	broad.mit.edu	37	5	45645327	45645327	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:45645327C>T	uc003jok.2	-	2	834	c.809G>A	c.(808-810)CGA>CAA	p.R270Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	270	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CCTTGAAAGTCGTAATAAACG	0.328			NA											9	23					0	0	0.006214	0	0
MAST4	375449	broad.mit.edu	37	5	66449351	66449351	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:66449351C>G	uc003jut.1	+	25	3092	c.3024C>G	c.(3022-3024)ATC>ATG	p.I1008M	MAST4_uc003juw.2_Missense_Mutation_p.I936M	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1200	PDZ.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCACTCACATCAATGGAGAAC	0.453			NA											2	7					0	0	0.004672	0	0
MARVELD2	153562	broad.mit.edu	37	5	68728870	68728870	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:68728870G>C	uc003jwq.2	+	5	1512	c.1453G>C	c.(1453-1455)GAG>CAG	p.E485Q	MARVELD2_uc010ixf.2_Missense_Mutation_p.E473Q|MARVELD2_uc003jwr.1_Intron|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	485	Potential.|Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		GAAGTTTGATGAGCTGGATGC	0.473			NA											52	62					0	0	0.00361	0	0
FAM169A	26049	broad.mit.edu	37	5	74109750	74109750	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:74109750C>G	uc003kdm.2	-	6	628	c.585G>C	c.(583-585)GGG>GGC	p.G195G	FAM169A_uc010izm.2_Intron|FAM169A_uc003kdl.2_Silent_p.G13G	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	195											0						GCATGTGAAGCCCAAAATCTT	0.408			NA											4	78					0	0	0.000602	0	0
CMYA5	202333	broad.mit.edu	37	5	79084793	79084793	+	Splice_Site	SNP	G	G	C	rs57346823		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:79084793G>C	uc003kgc.2	+	10	11628	c.11556_splice	c.e10-1	p.R3852_splice		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5							perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CTTGTATTTAGATCTTTCTCT	0.333			NA											19	13					0	0	0.010504	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175601	140175601	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140175601C>T	uc003lhd.2	+	1	1158	c.1052C>T	c.(1051-1053)TCA>TTA	p.S351L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.S351L|PCDHA2_uc011czy.1_Missense_Mutation_p.S351L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	351	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGAAGTCTCAATAACGTCT	0.453			NA											21	41					0	0	0.00278	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202977	140202977	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140202977G>C	uc003lhl.2	+	1	1617	c.1617G>C	c.(1615-1617)GCG>GCC	p.A539A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.A539A|PCDHA5_uc003lhj.1_Silent_p.A539A	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	539	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGCGACGCGGGCGTGCCGC	0.692			NA											43	59					0	0	0.00361	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216280	140216280	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140216280C>T	uc003lhq.2	+	1	2312	c.2312C>T	c.(2311-2313)GCC>GTC	p.A771V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.A771V	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	771	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACCTCATGGCCTTCAGTCCC	0.522	NSCLC(160;258 2013 5070 22440 28951)		NA											16	42					0	0	0.008871	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222831	140222831	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140222831C>G	uc003lhs.2	+	1	1925	c.1925C>G	c.(1924-1926)TCT>TGT	p.S642C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.S642C	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	642	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGCGGACTCTCCGCGCCAC	0.657			NA											57	139					0	0	0.00361	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140389491	140389491	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140389491G>T	uc003lii.2	+	4	3233	c.2993G>T	c.(2992-2994)GGG>GTG	p.G998V	PCDHA1_uc003lha.2_Missense_Mutation_p.G677V|PCDHA1_uc003lhb.2_Missense_Mutation_p.G941V|PCDHA2_uc003lhd.2_Missense_Mutation_p.G939V|PCDHA3_uc003lhf.2_Missense_Mutation_p.G941V|PCDHA4_uc003lhi.2_Missense_Mutation_p.G938V|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Missense_Mutation_p.G927V|PCDHA6_uc003lhn.2_Missense_Mutation_p.G677V|PCDHA6_uc003lho.2_Missense_Mutation_p.G941V|PCDHA7_uc003lhq.2_Missense_Mutation_p.G928V|PCDHA8_uc003lhs.2_Missense_Mutation_p.G941V|PCDHA9_uc003lhu.2_Missense_Mutation_p.G941V|PCDHA10_uc003lhw.2_Missense_Mutation_p.G676V|PCDHA10_uc003lhx.2_Missense_Mutation_p.G939V|PCDHA11_uc003lia.2_Missense_Mutation_p.G940V|PCDHA12_uc003lic.2_Missense_Mutation_p.G932V|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Missense_Mutation_p.G941V|PCDHAC1_uc003lih.2_Missense_Mutation_p.G954V	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	998	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAGAGAAAGGGAACAGCACG	0.348	Melanoma(190;638 2083 3390 11909 52360)		NA											25	77					4.72057e-08	5.1896e-08	0.003954	1	0
PCDHB7	56129	broad.mit.edu	37	5	140552615	140552615	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140552615G>T	uc003lit.2	+	1	373	c.199G>T	c.(199-201)GTT>TTT	p.V67F		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	67	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACTAGAATTGTTTCAGACCA	0.483			NA											18	46					2.4624e-09	2.75563e-09	0.008871	1	0
PCDHB8	56128	broad.mit.edu	37	5	140559546	140559546	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140559546T>A	uc011dai.1	+	1	2117	c.1931T>A	c.(1930-1932)CTG>CAG	p.L644Q	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	644	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGTGGTGCTGGTCAAGGAC	0.697			NA											33	31					0	0	0.004289	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725741	140725741	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140725741T>A	uc003ljm.1	+	1	2141	c.2141T>A	c.(2140-2142)CTC>CAC	p.L714H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.L474H|PCDHGA3_uc011dap.1_Missense_Mutation_p.L714H	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	714	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCTGGCGCTCAGGCTGCGG	0.682			NA											28	89					0	0	0.00361	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741192	140741192	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:140741192A>T	uc003ljs.1	+	1	1490	c.1490A>T	c.(1489-1491)AAG>ATG	p.K497M	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.K497M|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	497	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGACCTGAAGCCGCGGGAG	0.612			NA											27	29					0	0	0.002096	0	0
PCDH1	5097	broad.mit.edu	37	5	141236903	141236903	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:141236903C>A	uc003llp.2	-	4	3350	c.3233G>T	c.(3232-3234)CGA>CTA	p.R1078L		NM_032420	NP_115796	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 2 precursor	Error:Variant_position_missing_in_Q08174_after_alignment					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		GGGACCGAGTCGAGGCCCTGA	0.627	Ovarian(132;1609 1739 4190 14731 45037)		NA											21	34					6.21321e-17	7.50398e-17	0.00278	1	0
TCOF1	6949	broad.mit.edu	37	5	149758943	149758943	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:149758943G>T	uc003lry.2	+	16	2738	c.2630G>T	c.(2629-2631)AGT>ATT	p.S877I	TCOF1_uc003lrw.2_Missense_Mutation_p.S877I|TCOF1_uc011dch.1_Missense_Mutation_p.S877I|TCOF1_uc003lrz.2_Missense_Mutation_p.S877I|TCOF1_uc003lrx.2_Missense_Mutation_p.S800I|TCOF1_uc003lsa.2_Missense_Mutation_p.S800I|TCOF1_uc011dci.1_Intron	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	877					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGTCAGACAGTGAGGAGGAG	0.607			NA											15	29					5.01169e-05	5.28114e-05	0.00499	1	0
SAP30L	79685	broad.mit.edu	37	5	153833008	153833008	+	Missense_Mutation	SNP	G	G	T	rs148495748		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:153833008G>T	uc003lvk.2	+	3	1019	c.371G>T	c.(370-372)CGA>CTA	p.R124L	SAP30L_uc003lvm.3_RNA|SAP30L_uc011ddc.1_Missense_Mutation_p.R83L|SAP30L_uc011ddd.1_Missense_Mutation_p.R78L	NM_024632	NP_078908	Q9HAJ7	SP30L_HUMAN	SAP30-like isoform 1	124				RRYKRHYK->AAAAAAAA: Abolishes nucleolar localization.	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|metal ion binding				0	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			CGTTATAAACGACACTACAAG	0.483			NA											39	61					1.8453e-21	2.30578e-21	0.002522	1	0
MRPL22	29093	broad.mit.edu	37	5	154346452	154346452	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:154346452C>G	uc003lvy.3	+	7	654	c.616C>G	c.(616-618)CTA>GTA	p.L206V	MRPL22_uc003lvz.3_Missense_Mutation_p.L126V	NM_014180	NP_054899	Q9NWU5	RM22_HUMAN	mitochondrial ribosomal protein L22 isoform a	206					translation	large ribosomal subunit|mitochondrion	structural constituent of ribosome				0	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CGTTCACACTCTATGATGAGG	0.433			NA											4	4					0	0	0.000602	0	0
KIF4B	285643	broad.mit.edu	37	5	154394711	154394711	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:154394711A>T	uc010jih.1	+	1	1452	c.1292A>T	c.(1291-1293)AAC>ATC	p.N431I		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	431	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GAAAAACTGAACGCCAAGCTA	0.453			NA											32	65					0	0	0.004878	0	0
HAVCR1	26762	broad.mit.edu	37	5	156464271	156464271	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:156464271G>A	uc010jij.1	-	7	1124	c.939C>T	c.(937-939)GTC>GTT	p.V313V	HAVCR1_uc011ddl.1_Silent_p.V144V|HAVCR1_uc003lwi.2_Silent_p.V313V	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	308	Helical; (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGCAATGATGACACCCAAAA	0.328			NA											41	92					0	0	0.00361	0	0
ADAM19	8728	broad.mit.edu	37	5	156920137	156920137	+	Silent	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:156920137G>C	uc003lwz.2	-	16	1816	c.1752C>G	c.(1750-1752)CCC>CCG	p.P584P	ADAM19_uc003lww.1_Silent_p.P317P|ADAM19_uc003lwy.2_Silent_p.P183P|ADAM19_uc011ddr.1_Silent_p.P515P	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	584	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGACTCCAGGGGCCGGGCCT	0.597			NA											33	105					0	0	0.00874	0	0
EBF1	1879	broad.mit.edu	37	5	158267057	158267057	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:158267057G>A	uc010jip.2	-	7	918	c.616C>T	c.(616-618)CGT>TGT	p.R206C	EBF1_uc011ddw.1_Missense_Mutation_p.R73C|EBF1_uc011ddx.1_Missense_Mutation_p.R206C|EBF1_uc003lxl.3_Missense_Mutation_p.R183C	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	206					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CGCATGTCACGTGGGTTTCCC	0.383			NA	T	HMGA2	lipoma								21	64					0	0	0.00333	0	0
ATP10B	23120	broad.mit.edu	37	5	160047577	160047578	+	Missense_Mutation	DNP	GG	GG	CC			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:160047577_160047578GG>CC	uc003lym.1	-	15	3039_3040	c.2192_2193CC>GG	c.(2191-2193)GCC>GGG	p.A731G	ATP10B_uc010jit.1_Missense_Mutation_p.A48G|ATP10B_uc003lyn.2_Missense_Mutation_p.A289G	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	731	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGTAGGCATGGGCAGCGTGCAC	0.649			NA											15	38					0	0	0.004672	0	0
FBLL1	345630	broad.mit.edu	37	5	167957247	167957247	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:167957247C>G	uc011dep.1	+	1	666	c.453C>G	c.(451-453)TTC>TTG	p.F151L		NR_024356				RecName: Full=rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1;          EC=2.1.1.-;												0						ACGTGATCTTCGCCGACGTGG	0.627			NA											13	40					0	0	0.007413	0	0
STC2	8614	broad.mit.edu	37	5	172745196	172745196	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:172745196G>A	uc003mco.1	-	4	1873	c.563C>T	c.(562-564)GCC>GTC	p.A188V	STC2_uc003mcn.1_Missense_Mutation_p.A103V	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	188					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GTGGGTGATGGCCTCCTTCAC	0.502			NA											10	27					0	0	0.001368	0	0
IRF4	3662	broad.mit.edu	37	6	401593	401593	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:401593G>C	uc003msz.3	+	7	1028	c.915G>C	c.(913-915)GAG>GAC	p.E305D	IRF4_uc010jne.1_Missense_Mutation_p.E305D|IRF4_uc003mta.3_RNA|IRF4_uc003mtb.3_Missense_Mutation_p.E304D|IRF4_uc003mtc.1_Missense_Mutation_p.E135D	NM_002460	NP_002451	Q15306	IRF4_HUMAN	interferon regulatory factor 4	305					interferon-gamma-mediated signaling pathway|positive regulation of interleukin-10 biosynthetic process|positive regulation of interleukin-13 biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of transcription, DNA-dependent|regulation of T-helper cell differentiation|T cell activation|type I interferon-mediated signaling pathway	cytoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1		Breast(5;0.0155)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.03)|BRCA - Breast invasive adenocarcinoma(62;0.0702)		AAAACATTGAGAAGCTGCTGA	0.602			NA	T	IGH@	MM 								17	26					0	0	0.007413	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7987073	7987073	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:7987073G>A	uc003mxx.3	+	1	739	c.304G>A	c.(304-306)GTG>ATG	p.V102M	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						AGATTTCTACGTGGTGGAGAG	0.522			NA											21	46					0	0	0.003954	0	0
HIST1H3D	8351	broad.mit.edu	37	6	26197311	26197311	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:26197311C>T	uc003ngv.2	-	2	565	c.168G>A	c.(166-168)CAG>CAA	p.Q56Q	HIST1H2BF_uc003ngx.2_5'Flank	NM_003530	NP_003521	P68431	H31_HUMAN	histone cluster 1, H3d	56					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.196)				CGGTCGACTTCTGGTAGCGGC	0.632	GBM(108;3816 4467)		NA											16	79					0	0	0.003954	0	0
HIST1H2AH	85235	broad.mit.edu	37	6	27114968	27114968	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:27114968C>G	uc003niz.2	+	1	61	c.61C>G	c.(61-63)CGG>GGG	p.R21G	HIST1H2BK_uc003nix.1_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080596	NP_542163	Q96KK5	H2A1H_HUMAN	histone cluster 1, H2ah	21					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CCGCTCTTCTCGGGCTGGGCT	0.622			NA											28	79					0	0	0.002096	0	0
OR2B6	26212	broad.mit.edu	37	6	27925535	27925535	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:27925535G>T	uc011dkx.1	+	1	517	c.517G>T	c.(517-519)GTG>TTG	p.V173L		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGACCCCTATGTGATAGATCA	0.483			NA											49	90					7.50695e-29	9.66186e-29	0.00361	1	0
SCAND3	114821	broad.mit.edu	37	6	28540642	28540642	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:28540642C>G	uc003nlo.2	-	4	3642	c.3024G>C	c.(3022-3024)ATG>ATC	p.M1008I		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1008					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						atatttttttcatggcaagac	0			NA											26	68					0	0	0.005443	0	0
DHX16	8449	broad.mit.edu	37	6	30639018	30639018	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:30639018G>T	uc003nqz.2	-	2	453	c.241C>A	c.(241-243)CGG>AGG	p.R81R	DHX16_uc011dmo.1_Silent_p.R21R	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	81					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						TCTGCTGCCCGAGCTGGCTTT	0.557			NA											112	282					1.77217e-65	2.36519e-65	0.00361	1	0
TNXB	7148	broad.mit.edu	37	6	32036752	32036752	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:32036752C>A	uc003nzl.2	-	16	5951	c.5749G>T	c.(5749-5751)GAT>TAT	p.D1917Y		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1999	Fibronectin type-III 12.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCGTCTCTATCTGTGTACTGG	0.552			NA											48	143					1.35996e-42	1.79756e-42	0.00361	1	0
LRFN2	57497	broad.mit.edu	37	6	40400156	40400156	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:40400156G>T	uc003oph.1	-	2	1162	c.697C>A	c.(697-699)CCA>ACA	p.P233T		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	233	Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GACAAGGGTGGGGCAAAGGGT	0.602			NA											12	41					0.00010058	0.000105501	0.001368	1	0
KIAA0240	23506	broad.mit.edu	37	6	42797548	42797548	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:42797548C>T	uc003osn.1	+	6	1628	c.1477C>T	c.(1477-1479)CAG>TAG	p.Q493*	KIAA0240_uc003osm.1_Nonsense_Mutation_p.Q493*|KIAA0240_uc011duw.1_Nonsense_Mutation_p.Q493*|KIAA0240_uc003oso.1_Nonsense_Mutation_p.Q493*|KIAA0240_uc003osp.1_Nonsense_Mutation_p.Q493*	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	493										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			TGCCTCTCCTCAGCTTGTGGG	0.542			NA											37	94					0	0	0.009718	0	0
PTK7	5754	broad.mit.edu	37	6	43111325	43111325	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:43111325G>A	uc003oub.1	+	14	2416	c.2218G>A	c.(2218-2220)GAG>AAG	p.E740K	PTK7_uc003ouc.1_Missense_Mutation_p.E684K|PTK7_uc003oud.1_Missense_Mutation_p.E700K|PTK7_uc003oue.1_Missense_Mutation_p.E610K|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.E748K|PTK7_uc010jyj.1_Intron	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	740	Cytoplasmic (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GAAGCAGCCCGAGGGCGAGGA	0.667			NA									OREG0017450	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	17					0	0	0.006214	0	0
TTBK1	84630	broad.mit.edu	37	6	43251427	43251427	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:43251427C>T	uc003ouq.1	+	14	3228	c.2949C>T	c.(2947-2949)CTC>CTT	p.L983L		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	983						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			AGAACGGCCTCGCCCTGTCAG	0.682			NA											20	39					0	0	0.008871	0	0
POLR1C	9533	broad.mit.edu	37	6	43488713	43488713	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:43488713C>T	uc003ovn.2	+	8	906	c.849C>T	c.(847-849)TTC>TTT	p.F283F	POLR1C_uc003ovo.1_Silent_p.F283F	NM_203290	NP_976035	O15160	RPAC1_HUMAN	RNA polymerase I subunit isoform 1	283					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein dimerization activity				0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|all cancers(41;0.00511)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			TGGATACCTTCAGCAGAGAAA	0.443			NA											35	80					0	0	0.004289	0	0
C6orf138	442213	broad.mit.edu	37	6	47846746	47846746	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:47846746C>A	uc011dwm.1	-	3	1868	c.1783G>T	c.(1783-1785)GCC>TCC	p.A595S	C6orf138_uc011dwn.1_Missense_Mutation_p.A359S	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	612						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						CTAGTCCTGGCCACCAGATAC	0.438			NA											17	37					1.15088e-07	1.25717e-07	0.004007	1	0
TFAP2D	83741	broad.mit.edu	37	6	50683113	50683113	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:50683113G>T	uc003paf.2	+	2	836	c.324G>T	c.(322-324)GGG>GGT	p.G108G	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	108							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					TCCACCACGGGGAGCCCACCG	0.622			NA											26	59					1.50538e-07	1.63919e-07	0.00632	1	0
PHIP	55023	broad.mit.edu	37	6	79655973	79655973	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:79655973C>T	uc003pir.2	-	38	4601	c.4375G>A	c.(4375-4377)GAA>AAA	p.E1459K	PHIP_uc003piq.2_Missense_Mutation_p.E483K|PHIP_uc011dyp.1_Missense_Mutation_p.E1458K|IRAK1BP1_uc010kbg.1_RNA|PHIP_uc003pio.3_Missense_Mutation_p.E345K	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	1459					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		TTTTTCCTTTCAGGGCTGTAA	0.343			NA											31	67					0	0	0.002445	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86346828	86346828	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:86346828C>T	uc003pla.2	-	6	1064	c.523G>A	c.(523-525)GAG>AAG	p.E175K	SYNCRIP_uc003pku.2_Missense_Mutation_p.E175K|SYNCRIP_uc003pkw.2_Missense_Mutation_p.E175K|SYNCRIP_uc003pky.2_Missense_Mutation_p.E77K|SYNCRIP_uc003pkv.2_Missense_Mutation_p.E175K|SYNCRIP_uc003pkx.2_Missense_Mutation_p.E23K|SYNCRIP_uc003pkz.2_Missense_Mutation_p.E175K	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	175	RRM 1.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		AGTTCATCCTCAAATAGATCT	0.363			NA											9	29					0	0	0.006214	0	0
RNGTT	8732	broad.mit.edu	37	6	89388103	89388103	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:89388103C>T	uc003pmr.2	-	14	1695	c.1475G>A	c.(1474-1476)GGA>GAA	p.G492E	RNGTT_uc003pms.2_Missense_Mutation_p.G469E|RNGTT_uc011dzu.1_Missense_Mutation_p.G409E|RNGTT_uc003pmt.2_Missense_Mutation_p.G492E	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase	492	GTase.				interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		TTCATAACCTCCAACATACAG	0.323			NA											20	41					0	0	0.004656	0	0
MDN1	23195	broad.mit.edu	37	6	90455280	90455280	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:90455280C>G	uc003pnn.1	-	28	4086	c.3970G>C	c.(3970-3972)GAG>CAG	p.E1324Q		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1324					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AAATGTTTCTCAAGGACTTCT	0.348			NA											19	71					0	0	0.010504	0	0
FIG4	9896	broad.mit.edu	37	6	110056358	110056358	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:110056358G>T	uc003ptt.2	+	6	718	c.503G>T	c.(502-504)AGC>ATC	p.S168I	FIG4_uc011eau.1_Missense_Mutation_p.S22I	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	168	SAC.				cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		CTCAGTTACAGCTATGATTTG	0.368			NA											24	72					3.08376e-08	3.40654e-08	0.00333	1	0
LAMA4	3910	broad.mit.edu	37	6	112476083	112476083	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:112476083C>T	uc003pvu.2	-	16	2335	c.2026G>A	c.(2026-2028)GCC>ACC	p.A676T	LAMA4_uc003pvv.2_Missense_Mutation_p.A669T|LAMA4_uc003pvt.2_Missense_Mutation_p.A669T	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	676	Domain II and I.|Potential.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		AGTTCTCTGGCTTGATTGAGG	0.398			NA											22	78					0	0	0.004656	0	0
LAMA4	3910	broad.mit.edu	37	6	112476086	112476086	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:112476086G>A	uc003pvu.2	-	16	2332	c.2023C>T	c.(2023-2025)CAA>TAA	p.Q675*	LAMA4_uc003pvv.2_Nonsense_Mutation_p.Q668*|LAMA4_uc003pvt.2_Nonsense_Mutation_p.Q668*	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	675	Domain II and I.|Potential.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		TCTCTGGCTTGATTGAGGAGG	0.398			NA											22	77					0	0	0.004656	0	0
THEMIS	387357	broad.mit.edu	37	6	128134640	128134640	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:128134640G>T	uc003qbi.2	-	5	1465	c.1146C>A	c.(1144-1146)TCC>TCA	p.S382S	THEMIS_uc010kfa.2_Silent_p.S285S|THEMIS_uc011ebt.1_Silent_p.S382S|THEMIS_uc010kfb.2_Silent_p.S347S	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	382	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CAACAGATACGGATGACAGCT	0.488			NA											22	45					2.79863e-10	3.16809e-10	0.004656	1	0
ALDH8A1	64577	broad.mit.edu	37	6	135263570	135263570	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:135263570G>A	uc003qew.2	-	3	472	c.419C>T	c.(418-420)ACG>ATG	p.T140M	ALDH8A1_uc003qex.2_Missense_Mutation_p.T140M|ALDH8A1_uc010kgh.2_Translation_Start_Site|ALDH8A1_uc011ecx.1_Missense_Mutation_p.T140M	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	140					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		GGCCCGCACCGTGTAGTGCAT	0.582			NA											30	68					0	0	0.002836	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597195	136597195	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:136597195C>A	uc003qgx.1	-	5	1721	c.1468G>T	c.(1468-1470)GTA>TTA	p.V490L	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.V488L|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.V488L	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	490					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCTTTCTTTACTGTTATTCTT	0.368	Colon(142;1534 1789 5427 7063 28491)		NA											22	130					7.41877e-09	8.24843e-09	0.001882	1	0
TXLNB	167838	broad.mit.edu	37	6	139609632	139609632	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:139609632C>A	uc011eds.1	-	2	570	c.405G>T	c.(403-405)AAG>AAT	p.K135N		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	135	Potential.					cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		TTAGGATTTTCTTTTCCAATT	0.408			NA											28	77					4.74835e-14	5.54918e-14	0.002096	1	0
FBXO5	26271	broad.mit.edu	37	6	153296105	153296105	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:153296105C>T	uc003qpg.2	-	2	864	c.755G>A	c.(754-756)CGA>CAA	p.R252Q	FBXO5_uc003qph.2_Missense_Mutation_p.R206Q	NM_012177	NP_036309	Q9UKT4	FBX5_HUMAN	F-box only protein 5 isoform a	252	F-box.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm|spindle	metal ion binding|protein binding				0		Ovarian(120;0.125)		OV - Ovarian serous cystadenocarcinoma(155;4.38e-10)|BRCA - Breast invasive adenocarcinoma(81;0.0893)		GAGTCCCCTTCGAAAGAGTTC	0.358	NSCLC(121;372 1757 17721 17977 29669)		NA											35	72					0	0	0.00874	0	0
TFB1M	51106	broad.mit.edu	37	6	155606413	155606413	+	Splice_Site	SNP	T	T	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:155606413T>C	uc003qqj.3	-	5	611	c.547_splice	c.e5-1	p.R183_splice	TFB1M_uc003qqk.2_Intron	NM_016020	NP_057104	Q8WVM0	TFB1M_HUMAN	transcription factor B1, mitochondrial						regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	DNA binding|protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity			skin(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;1.48e-12)|BRCA - Breast invasive adenocarcinoma(81;0.0131)		TGCAAGTCTCTAGAGAGAGAC	0.398			NA											11	21					0	0	0.008291	0	0
PSMB1	5689	broad.mit.edu	37	6	170846376	170846376	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:170846376G>A	uc011ehe.1	-	5	573	c.486C>T	c.(484-486)TCC>TCT	p.S162S	PSMB1_uc003qxq.2_RNA|PSMB1_uc003qxr.2_Silent_p.S61S	NM_002793	NP_002784	P20618	PSB1_HUMAN	proteasome beta 1 subunit precursor	162					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cell junction|cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.0563)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;7.5e-23)|BRCA - Breast invasive adenocarcinoma(81;4.88e-06)|GBM - Glioblastoma multiforme(31;0.00643)	Bortezomib(DB00188)	CAGCCTTGAAGGAGTCTCTCT	0.453			NA											22	39					0	0	0.004656	0	0
CARD11	84433	broad.mit.edu	37	7	2954905	2954905	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:2954905C>G	uc003smv.2	-	21	3209	c.2805G>C	c.(2803-2805)CTG>CTC	p.L935L		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	935					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TGGTGGCGTCCAGCGAGGACC	0.627			NA	Mis		DLBCL								72	43					0	0	0.00361	0	0
GLCCI1	113263	broad.mit.edu	37	7	8095167	8095167	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:8095167C>G	uc003srk.2	+	4	1360	c.801C>G	c.(799-801)ATC>ATG	p.I267M		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	267											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		ATATAACAATCAGTCACACTC	0.398			NA											76	43					0	0	0.00361	0	0
PHF14	9678	broad.mit.edu	37	7	11068308	11068308	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:11068308G>C	uc003sry.1	+	7	1753	c.1318G>C	c.(1318-1320)GAG>CAG	p.E440Q	PHF14_uc011jxi.1_Missense_Mutation_p.E155Q|PHF14_uc003srz.2_Missense_Mutation_p.E440Q|PHF14_uc011jxj.1_Missense_Mutation_p.E155Q	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	440							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		TTTGTTGTAGGAGTGTAGCTT	0.393			NA											15	8					0	0	0.006122	0	0
SP4	6671	broad.mit.edu	37	7	21469387	21469387	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:21469387G>A	uc003sva.2	+	3	785	c.604G>A	c.(604-606)GGT>AGT	p.G202S	SP4_uc003svb.2_5'UTR	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	202					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						CATTTCTGCAGGTAATAATCA	0.418			NA											54	281					0	0	0.00361	0	0
MPP6	51678	broad.mit.edu	37	7	24690293	24690293	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:24690293A>T	uc003swx.2	+	6	912	c.613A>T	c.(613-615)ATC>TTC	p.I205F	MPP6_uc003swy.2_Missense_Mutation_p.I205F	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	205	PDZ.				protein complex assembly		protein binding				0						CACCCTAAAAATCTTACCAAG	0.303			NA											58	70					0	0	0.00361	0	0
NFE2L3	9603	broad.mit.edu	37	7	26224622	26224622	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:26224622C>G	uc003sxq.2	+	4	1576	c.1304C>G	c.(1303-1305)TCT>TGT	p.S435C		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	435					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						GTCATCAAGTCTAATTCCTCT	0.403			NA											36	222					0	0	0.004878	0	0
HOXA3	3200	broad.mit.edu	37	7	27149900	27149900	+	Silent	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:27149900C>A	uc011jzl.1	-	2	560	c.360G>T	c.(358-360)CCG>CCT	p.P120P	HOXA3_uc011jzk.1_Splice_Site|HOXA3_uc003syk.2_Silent_p.P120P	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	120	Pro-rich.				angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						AAGAGggaggcgggggcgcgg	0.299	Esophageal Squamous(136;1368 1743 5685 7935 50360)		NA											13	55					1.62849e-17	1.97725e-17	0.004007	1	0
POU6F2	11281	broad.mit.edu	37	7	39125535	39125535	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:39125535G>A	uc003thb.1	+	2	136	c.94G>A	c.(94-96)GAG>AAG	p.E32K	POU6F2_uc010kxo.2_Missense_Mutation_p.E24K	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	32					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GTTGAGAGGTGAGGACAAGGC	0.527			NA											13	45					0	0	0.006122	0	0
GRB10	2887	broad.mit.edu	37	7	50671734	50671735	+	Missense_Mutation	DNP	TC	TC	AT			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	TC	TC	-	-	TC	TC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:50671734_50671735TC>AT	uc003tpi.2	-	14	1535_1536	c.1504_1505GA>AT	c.(1504-1506)GAA>ATA	p.E502I	GRB10_uc003tph.3_Missense_Mutation_p.E444I|GRB10_uc003tpj.2_Missense_Mutation_p.E456I|GRB10_uc003tpk.2_Missense_Mutation_p.E502I|GRB10_uc010kzb.2_Missense_Mutation_p.E444I|GRB10_uc003tpl.2_Missense_Mutation_p.E496I|GRB10_uc003tpm.2_Missense_Mutation_p.E444I|GRB10_uc003tpn.2_Missense_Mutation_p.E444I	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	502	SH2.				insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					CCTGTGGGATTCCTCCCTGGAG	0.47			NA							Russell-Silver_syndrome				70	223					0	0	0.004672	0	0
EGFR	1956	broad.mit.edu	37	7	55211028	55211028	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:55211028A>G	uc003tqk.2	+	3	517	c.271A>G	c.(271-273)ATT>GTT	p.I91V	EGFR_uc003tqh.2_Missense_Mutation_p.I91V|EGFR_uc003tqi.2_Missense_Mutation_p.I91V|EGFR_uc003tqj.2_Missense_Mutation_p.I91V|EGFR_uc010kzg.1_Missense_Mutation_p.I91V|EGFR_uc011kco.1_Missense_Mutation_p.I38V	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	91	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)|p.I91L(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TTATGTCCTCATTGCCCTCAA	0.413			8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			36	95					0	0	0.006999	0	0
EGFR	1956	broad.mit.edu	37	7	55269468	55269468	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:55269468G>T	uc003tqk.2	+	26	3401	c.3155G>T	c.(3154-3156)AGA>ATA	p.R1052I	EGFR_uc010kzg.1_Missense_Mutation_p.R1007I|EGFR_uc011kco.1_Missense_Mutation_p.R999I	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	1052	Cytoplasmic (Potential).|Ser-rich.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TGCATTGATAGAAATGGGGTA	0.398			8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			48	156					1.13205e-32	1.47921e-32	0.00361	1	0
ELN	2006	broad.mit.edu	37	7	73470702	73470702	+	Missense_Mutation	SNP	G	G	T	rs142438174		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:73470702G>T	uc003tzw.2	+	20	1343	c.1252G>T	c.(1252-1254)GCA>TCA	p.A418S	RFC2_uc011kfa.1_Intron|ELN_uc011kfe.1_Missense_Mutation_p.A387S|ELN_uc003tzn.2_Missense_Mutation_p.A418S|ELN_uc003tzz.2_Intron|ELN_uc003tzo.2_Missense_Mutation_p.A404S|ELN_uc003tzp.2_Intron|ELN_uc003tzq.2_Missense_Mutation_p.A301S|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.A418S|ELN_uc003tzt.2_Missense_Mutation_p.A423S|ELN_uc003tzu.2_Missense_Mutation_p.A423S|ELN_uc003tzv.2_Missense_Mutation_p.A408S|ELN_uc003tzx.2_Missense_Mutation_p.A408S|ELN_uc011kff.1_Missense_Mutation_p.A418S|ELN_uc003tzy.2_Missense_Mutation_p.A413S	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	418	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding	p.A418T(1)		ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CCCTGGAGTCGCAGGTGTCCC	0.627			NA	T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						63	170					1.26778e-28	1.62865e-28	0.00361	1	0
SLC25A40	55972	broad.mit.edu	37	7	87471013	87471013	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:87471013G>C	uc003uje.2	-	10	1109	c.758C>G	c.(757-759)ACT>AGT	p.T253S		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	253	Helical; Name=5; (Potential).|Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					AAATGGTAAAGTTGCAACAGC	0.239			NA											8	33					0	0	0.000978	0	0
CALCR	799	broad.mit.edu	37	7	93067425	93067425	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:93067425C>G	uc003umv.1	-	12	1240	c.979G>C	c.(979-981)GTG>CTG	p.V327L	CALCR_uc011kia.1_Missense_Mutation_p.V107L|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.V293L|CALCR_uc003umw.2_Missense_Mutation_p.V293L	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	309	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	TGGGTTTCCACACTCAGCCAG	0.348			NA											14	60					0	0	0.010504	0	0
LMTK2	22853	broad.mit.edu	37	7	97822874	97822874	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:97822874G>A	uc003upd.1	+	11	3390	c.3097G>A	c.(3097-3099)GAA>AAA	p.E1033K		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1033					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CAGTGGCTACGAAACAGAGAA	0.607			NA											25	84					0	0	0.007291	0	0
SRRT	51593	broad.mit.edu	37	7	100485997	100485997	+	Missense_Mutation	SNP	C	C	T	rs139519950		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:100485997C>T	uc003uwy.2	+	20	2816	c.2548C>T	c.(2548-2550)CGC>TGC	p.R850C	SRRT_uc010lhl.1_Missense_Mutation_p.R849C|SRRT_uc003uxa.2_Missense_Mutation_p.R845C|SRRT_uc003uwz.2_Missense_Mutation_p.R846C|uc010lhm.1_5'Flank	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	850					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						TGGGAAACCTCGCAACAGGTG	0.602			NA											3	33					0	0	0.004672	0	0
PRKRIP1	79706	broad.mit.edu	37	7	102047917	102047917	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:102047917G>A	uc003uzh.2	+	5	484	c.429G>A	c.(427-429)AAG>AAA	p.K143K	PRKRIP1_uc003uzf.2_Silent_p.K92K|PRKRIP1_uc003uzg.2_Silent_p.K92K|PRKRIP1_uc011kkq.1_Silent_p.K86K|PRKRIP1_uc011kkr.1_Intron|MIR548O_hsa-mir-548o|MI0006402_5'Flank	NM_024653	NP_078929	Q9H875	PKRI1_HUMAN	PRKR interacting protein 1 (IL11 inducible)	143	Potential.|Required for RNA-binding (By similarity).					nucleolus				ovary(1)	1						TGGCAAAGAAGATGAAACTTG	0.348			NA											12	48					0	0	0.00245	0	0
RELN	5649	broad.mit.edu	37	7	103368615	103368615	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:103368615G>A	uc003vca.2	-	7	856	c.696C>T	c.(694-696)GGC>GGT	p.G232G	RELN_uc010liz.2_Silent_p.G232G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	232					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GCATAATCGCGCCACACTGTT	0.448	NSCLC(146;835 1944 15585 22231 52158)		NA											50	67					0	0	0.00361	0	0
DOCK4	9732	broad.mit.edu	37	7	111379217	111379217	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:111379217G>A	uc003vfx.2	-	48	5447	c.5178C>T	c.(5176-5178)ATC>ATT	p.I1726I	DOCK4_uc011kml.1_Silent_p.I607I|DOCK4_uc011kmm.1_Silent_p.I633I|DOCK4_uc003vfw.2_Silent_p.I1176I|DOCK4_uc003vfy.2_Silent_p.I1771I|DOCK4_uc003vfv.2_Silent_p.I39I	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1726	Ser-rich.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GTGTTGGATAGATGGCACTGC	0.463			NA											26	81					0	0	0.002445	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518041	113518041	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:113518041G>T	uc010ljy.1	-	4	3137	c.3106C>A	c.(3106-3108)CAA>AAA	p.Q1036K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1036					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TATAGTGATTGCCCAGAGCTT	0.398			NA											63	180					1.93348e-29	2.49786e-29	0.00361	1	0
AASS	10157	broad.mit.edu	37	7	121726159	121726159	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:121726159C>G	uc003vka.2	-	18	2187	c.2091G>C	c.(2089-2091)TTG>TTC	p.L697F	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Missense_Mutation_p.L697F|AASS_uc011knw.1_Missense_Mutation_p.L185F	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	697	Saccharopine dehydrogenase.				protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	GATAGCCTTCCAAATTTAATC	0.428			NA											20	53					0	0	0.008871	0	0
GPR37	2861	broad.mit.edu	37	7	124404368	124404368	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:124404368C>G	uc003vli.2	-	1	1314	c.663G>C	c.(661-663)CAG>CAC	p.Q221H		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	221	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						AGGATCCATTCTGGGCCAGCG	0.637			NA											23	53					0	0	0.003954	0	0
SND1	27044	broad.mit.edu	37	7	127342491	127342491	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:127342491A>G	uc003vmi.2	+	6	818	c.592A>G	c.(592-594)ATC>GTC	p.I198V		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	198	TNase-like 2.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						TCACACAGCTATCATCGAGCA	0.488			NA											50	138					0	0	0.00361	0	0
FLNC	2318	broad.mit.edu	37	7	128497331	128497331	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:128497331C>A	uc003vnz.3	+	46	7930	c.7721C>A	c.(7720-7722)GCC>GAC	p.A2574D	FLNC_uc003voa.3_Missense_Mutation_p.A2541D	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2574	Interaction with INPPL1.|Filamin 23.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TACCTCATTGCCATCAAGTAC	0.617			NA											32	47					4.4194e-11	5.04444e-11	0.002836	1	0
KIAA1549	57670	broad.mit.edu	37	7	138579145	138579146	+	Missense_Mutation	DNP	GC	GC	AA			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	GC	GC	-	-	GC	GC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:138579145_138579146GC>AA	uc011kql.1	-	10	4023_4024	c.3974_3975GC>TT	c.(3973-3975)CGC>CTT	p.R1325L	KIAA1549_uc011kqi.1_Missense_Mutation_p.R109L|KIAA1549_uc003vuk.3_Missense_Mutation_p.R1275L|KIAA1549_uc011kqj.1_Missense_Mutation_p.R1325L|KIAA1549_uc011kqk.1_Missense_Mutation_p.R109L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1325						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GCTTGTCTGTGCGGCATAGTTT	0.52	NSCLC(119;1534 1718 44213 46230 50068)		NA	O	BRAF	pilocytic astrocytoma								46	169					0	0	0.004672	0	0
OR2F2	135948	broad.mit.edu	37	7	143632716	143632716	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:143632716C>T	uc011ktv.1	+	1	391	c.391C>T	c.(391-393)CGA>TGA	p.R131*		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TGACCGCCTGCGATACTCGGC	0.552			NA											36	107					0	0	0.004878	0	0
SSPO	23145	broad.mit.edu	37	7	149495214	149495214	+	Splice_Site	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:149495214G>T	uc010lpk.2	+	48	6961	c.6961_splice	c.e48+1	p.E2321_splice		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor						cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TCCCCGACAGGTGTGTGCACA	0.652			NA											69	94					1.78623e-52	2.37472e-52	0.00361	1	0
SMARCD3	6604	broad.mit.edu	37	7	150939586	150939586	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:150939586T>G	uc003wjs.2	-	5	661	c.560A>C	c.(559-561)GAG>GCG	p.E187A	SMARCD3_uc003wjt.2_Missense_Mutation_p.E174A|SMARCD3_uc003wju.2_Missense_Mutation_p.E174A|SMARCD3_uc011kvh.1_Missense_Mutation_p.E187A|SMARCD3_uc010lqa.1_Missense_Mutation_p.E187A	NM_001003801	NP_001003801	Q6STE5	SMRD3_HUMAN	SWI/SNF related, matrix associated, actin	187					cellular lipid metabolic process|chromatin modification|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	nuclear hormone receptor binding|protein binding|transcription coactivator activity|transcription factor binding			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGCTTCCCCTCCACCCGTAG	0.577			NA											67	54					0	0	0.00361	0	0
MLL3	58508	broad.mit.edu	37	7	151932917	151932917	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:151932917A>G	uc003wla.2	-	16	2973	c.2754T>C	c.(2752-2754)GCT>GCC	p.A918A	MLL3_uc003wkz.2_5'UTR	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	918					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GTAATACAACAGCTCCGATTC	0.468	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								31	214					0	0	0.009718	0	0
MLL3	58508	broad.mit.edu	37	7	151945009	151945009	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:151945009G>T	uc003wla.2	-	14	2729	c.2510C>A	c.(2509-2511)CCT>CAT	p.P837H		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	837					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGGTCTACCAGGAGAAAATTT	0.373	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								15	207					1.55795e-14	1.83634e-14	0.001882	1	0
MLL3	58508	broad.mit.edu	37	7	151962220	151962220	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:151962220C>G	uc003wla.2	-	8	1306	c.1087G>C	c.(1087-1089)GGT>CGT	p.G363R		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	363	PHD-type 1.|RING-type.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TAGTGCTGACCACAAGTAGTA	0.448	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								16	516					0	0	0.001882	0	0
MNX1	3110	broad.mit.edu	37	7	156799175	156799175	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:156799175G>C	uc003wnd.1	-	2	1153	c.850C>G	c.(850-852)CAG>GAG	p.Q284E	MNX1_uc003wmz.2_Intron|MNX1_uc003wna.2_Intron|MNX1_uc010lqq.1_Missense_Mutation_p.Q77E|MNX1_uc003wnc.1_Missense_Mutation_p.Q72E|MNX1_uc010lqr.1_Intron	NM_005515	NP_005506	P50219	MNX1_HUMAN	motor neuron and pancreas homeobox 1 isoform 1	284	Homeobox.				humoral immune response|regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCGCGCACCTGGGTCTCGGTG	0.662			NA							Currarino_syndrome				13	21					0	0	0.00499	0	0
VIPR2	7434	broad.mit.edu	37	7	158829540	158829540	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr7:158829540G>T	uc003woh.2	-	7	837	c.651C>A	c.(649-651)TTC>TTA	p.F217L	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	217	Helical; Name=3; (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		GCAGCCAGAAGAAGTTGGCCA	0.587	Pancreas(154;1876 1931 2329 17914 20079)		NA											22	65					7.33532e-06	7.78952e-06	0.003954	1	0
DEFB4A	1673	broad.mit.edu	37	8	7752238	7752238	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:7752238A>G	uc003wsd.2	+	1	40	c.4A>G	c.(4-6)AGG>GGG	p.R2G		NM_004942	NP_004933	O15263	DFB4A_HUMAN	defensin, beta 4 precursor	2					chemotaxis|defense response to bacterium|G-protein coupled receptor protein signaling pathway|immune response	extracellular region					0						ATCAGCCATGAGGGTCTTGTA	0.527	Ovarian(105;1718 2131 4132 11552)		NA											7	112					0	0	0.008291	0	0
PCM1	5108	broad.mit.edu	37	8	17796323	17796323	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:17796323G>A	uc003wyi.3	+	5	839	c.417G>A	c.(415-417)AAG>AAA	p.K139K	PCM1_uc011kyh.1_Silent_p.K139K|PCM1_uc003wyj.3_Silent_p.K139K|PCM1_uc003wyg.2_Silent_p.K139K|PCM1_uc003wyh.2_Silent_p.K139K|PCM1_uc010lta.1_Silent_p.K139K	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	139					centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		AAAACCGAAAGCCCTTCAACT	0.393			NA	T	RET|JAK2	papillary thyroid|CML|MPD								11	21					0	0	0.00245	0	0
UNC5D	137970	broad.mit.edu	37	8	35606111	35606111	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:35606111C>G	uc003xjr.1	+	12	2161	c.1833C>G	c.(1831-1833)ATC>ATG	p.I611M	UNC5D_uc003xjs.1_Missense_Mutation_p.I606M|UNC5D_uc003xju.1_Missense_Mutation_p.I187M	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	611	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CAGACATGATCGTCACCACTC	0.493			NA											38	45					0	0	0.007835	0	0
GPR124	25960	broad.mit.edu	37	8	37688280	37688280	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:37688280G>A	uc003xkj.2	+	7	1134	c.771G>A	c.(769-771)GTG>GTA	p.V257V	GPR124_uc010lvy.2_Silent_p.V257V	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	257	Extracellular (Potential).|Ig-like.				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			TACGCCAAGTGGTGTTCCAGG	0.657			NA											8	20					0	0	0.004482	0	0
GPR124	25960	broad.mit.edu	37	8	37691560	37691560	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:37691560G>A	uc003xkj.2	+	11	1885	c.1522G>A	c.(1522-1524)GAG>AAG	p.E508K	GPR124_uc010lvy.2_Missense_Mutation_p.E508K	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	508	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			GGCCCAGCGCGAGGACAAGGC	0.662			NA											46	98					0	0	0.002522	0	0
IKBKB	3551	broad.mit.edu	37	8	42166509	42166509	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:42166509C>T	uc003xow.1	+	8	835	c.658C>T	c.(658-660)CGG>TGG	p.R220W	IKBKB_uc003xov.2_Missense_Mutation_p.R220W|IKBKB_uc010lxh.1_Missense_Mutation_p.R115W|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Intron|IKBKB_uc003xox.1_5'UTR|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Missense_Mutation_p.R218W|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Missense_Mutation_p.R161W	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	220	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	CACGGGCTTCCGGCCCTTCCT	0.627			NA											53	145					0	0	0.00361	0	0
CHD7	55636	broad.mit.edu	37	8	61734601	61734601	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:61734601G>A	uc003xue.2	+	11	3331	c.2854G>A	c.(2854-2856)GAT>AAT	p.D952N	CHD7_uc003xuf.2_Missense_Mutation_p.D65N	NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	952					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TCCTGCTGATGATTGGAAGAA	0.388			NA											12	42					0	0	0.001855	0	0
CLVS1	157807	broad.mit.edu	37	8	62412051	62412051	+	Missense_Mutation	SNP	G	G	A	rs35623706		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:62412051G>A	uc003xuh.2	+	6	1339	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Silent_p.*260*	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	339					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CCTGAAACATGAGGAGAAGGG	0.498			NA											19	67					0	0	0.002299	0	0
CYP7B1	9420	broad.mit.edu	37	8	65509386	65509386	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:65509386C>T	uc003xvj.2	-	6	1538	c.1334G>A	c.(1333-1335)GGA>GAA	p.G445E		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	445					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				TTTGCTGGTTCCAGTTCCAAA	0.323			NA											15	33					0	0	0.00499	0	0
TRPA1	8989	broad.mit.edu	37	8	72936057	72936057	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:72936057C>T	uc003xza.2	-	26	3316	c.3141G>A	c.(3139-3141)CAG>CAA	p.Q1047Q	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	1047	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	ACCGGTATTTCTGCTTTAATA	0.259			NA											26	51					0	0	0.004656	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617343	77617343	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:77617343A>C	uc003yav.2	+	2	1407	c.1020A>C	c.(1018-1020)AAA>AAC	p.K340N	ZFHX4_uc003yat.1_Missense_Mutation_p.K340N|ZFHX4_uc003yau.1_Missense_Mutation_p.K340N|ZFHX4_uc003yaw.1_Missense_Mutation_p.K340N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	340						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AACCAAAAAAATCCACTTCTG	0.433			NA								HNSCC(33;0.089)			23	57					0	0	0.003954	0	0
LRRCC1	85444	broad.mit.edu	37	8	86039068	86039068	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:86039068G>A	uc003ycw.2	+	9	1571	c.1417G>A	c.(1417-1419)GAT>AAT	p.D473N	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Missense_Mutation_p.D174N|LRRCC1_uc003ycx.2_Missense_Mutation_p.D380N|LRRCC1_uc003ycy.2_Missense_Mutation_p.D453N	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	473	Potential.				cell division|mitosis	centriole|nucleus					0						ACTTACCACAGATAGGTAAAA	0.338			NA											20	44					0	0	0.010504	0	0
KIAA1429	25962	broad.mit.edu	37	8	95541319	95541319	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:95541319C>T	uc003ygo.1	-	7	872	c.859G>A	c.(859-861)GAA>AAA	p.E287K	KIAA1429_uc003ygp.2_Missense_Mutation_p.E287K|KIAA1429_uc010maz.1_5'Flank	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	287	Glu-rich.				mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			tcatcctcttcaccttcttcc	0.244			NA											9	29					0	0	0.008291	0	0
INTS8	55656	broad.mit.edu	37	8	95884155	95884155	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:95884155G>C	uc003yhb.2	+	21	2584	c.2458G>C	c.(2458-2460)GAG>CAG	p.E820Q	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.E647Q	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	820					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					CACAGTGAAAGAGCTAGTTCG	0.348			NA											22	44					0	0	0.002299	0	0
RSPO2	340419	broad.mit.edu	37	8	109001460	109001460	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:109001460G>A	uc003yms.2	-	3	765	c.107C>T	c.(106-108)TCA>TTA	p.S36L	RSPO2_uc003ymq.2_5'UTR|RSPO2_uc003ymr.2_Intron	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	36					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			AATGGGATTTGATACATAACT	0.353			NA											20	48					0	0	0.001882	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110397764	110397764	+	Splice_Site	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:110397764A>T	uc003yne.2	+	6	580	c.476_splice	c.e6-2	p.G159_splice		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor						immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTTTGTTTTCAGGTACACTAA	0.249			NA								HNSCC(38;0.096)			4	16					0	0	0.000602	0	0
ASAP1	50807	broad.mit.edu	37	8	131073214	131073214	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:131073214G>C	uc003yta.1	-	27	2831	c.2803C>G	c.(2803-2805)CCA>GCA	p.P935A	ASAP1_uc003ysz.1_Missense_Mutation_p.P746A|ASAP1_uc011liw.1_Missense_Mutation_p.P928A	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	935	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TCTCCAGGTGGTGGCTTTTGT	0.547			NA											51	132					0	0	0.00361	0	0
OC90	729330	broad.mit.edu	37	8	133053885	133053885	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:133053885G>A	uc003ytg.2	-	3	183	c.183C>T	c.(181-183)ATC>ATT	p.I61I	OC90_uc011lix.1_Silent_p.I77I	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	77	Phospholipase A2-like 1.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			TGACAAACTGGATCAGCACAG	0.567			NA											14	37					0	0	0.001855	0	0
COL22A1	169044	broad.mit.edu	37	8	139736904	139736904	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:139736904G>T	uc003yvd.2	-	25	2648	c.2201C>A	c.(2200-2202)CCT>CAT	p.P734H	COL22A1_uc011ljo.1_Missense_Mutation_p.P34H	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	734	Collagen-like 5.|Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GATCTCTCCAGGCAAACCCTG	0.592			NA								HNSCC(7;0.00092)			27	40					2.68265e-12	3.08886e-12	0.002836	1	0
COL22A1	169044	broad.mit.edu	37	8	139839014	139839014	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:139839014G>A	uc003yvd.2	-	6	1303	c.856C>T	c.(856-858)CCC>TCC	p.P286S		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	286	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			AAACCTTGGGGGAACACATCC	0.522			NA								HNSCC(7;0.00092)			11	30					0	0	0.008291	0	0
KCNK9	51305	broad.mit.edu	37	8	140630669	140630669	+	Silent	SNP	G	G	A	rs140285421		TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:140630669G>A	uc003yvf.1	-	2	1021	c.957C>T	c.(955-957)AGC>AGT	p.S319S	KCNK9_uc003yvg.1_Silent_p.S319S|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	319	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CAAGCTTGGCGCTGAAGGAGT	0.577			NA											31	67					0	0	0.003755	0	0
DENND3	22898	broad.mit.edu	37	8	142178212	142178212	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:142178212G>A	uc003yvy.2	+	13	1901	c.1623G>A	c.(1621-1623)CTG>CTA	p.L541L	DENND3_uc010mep.2_Silent_p.L502L|DENND3_uc003yvz.1_Silent_p.L225L	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	541										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TCTCCATGCTGAGCGAGGCCA	0.557			NA											46	110					0	0	0.00361	0	0
DMRT3	58524	broad.mit.edu	37	9	977286	977286	+	Silent	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:977286A>G	uc003zgw.1	+	1	323	c.285A>G	c.(283-285)CCA>CCG	p.P95P		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	95					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		GCGCTCTGCCAGGgcccccgc	0.368			NA											7	21					0	0	0.00308	0	0
RCL1	10171	broad.mit.edu	37	9	4833225	4833225	+	Silent	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:4833225G>A	uc003zis.2	+	4	714	c.456G>A	c.(454-456)CTG>CTA	p.L152L	RCL1_uc003zit.2_5'UTR|RCL1_uc010mhk.1_5'UTR	NM_005772	NP_005763	Q9Y2P8	RCL1_HUMAN	RNA terminal phosphate cyclase-like 1	152					ribosome biogenesis|RNA processing	nucleolus	RNA-3'-phosphate cyclase activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0206)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0244)		CATTTGAACTGAAGGTAAGAA	0.373			NA											17	84					0	0	0.002299	0	0
RANBP6	26953	broad.mit.edu	37	9	6012838	6012838	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:6012838C>G	uc003zjr.2	-	1	2781	c.2770G>C	c.(2770-2772)GAT>CAT	p.D924H	RANBP6_uc011lmf.1_Missense_Mutation_p.D572H|RANBP6_uc003zjs.2_Missense_Mutation_p.D512H	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	924	HEAT 6.				protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		GGGTTGTTATCTCGCATATTT	0.428			NA											12	44					0	0	0.001855	0	0
ELAVL2	1993	broad.mit.edu	37	9	23731084	23731084	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:23731084G>T	uc003zpu.2	-	3	544	c.269C>A	c.(268-270)CCC>CAC	p.P90H	ELAVL2_uc003zps.2_Missense_Mutation_p.P90H|ELAVL2_uc003zpt.2_Missense_Mutation_p.P90H|ELAVL2_uc003zpv.2_Missense_Mutation_p.P90H|ELAVL2_uc003zpw.2_Missense_Mutation_p.P90H	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	90	RRM 1.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TGCATCCTTGGGGTCAATGTA	0.373			NA											15	62					1.56452e-12	1.80989e-12	0.007413	1	0
UBAP1	51271	broad.mit.edu	37	9	34241369	34241369	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:34241369C>G	uc003ztx.2	+	4	581	c.346C>G	c.(346-348)CCT>GCT	p.P116A	UBAP1_uc010mka.1_Missense_Mutation_p.P152A|UBAP1_uc003zty.2_Missense_Mutation_p.P116A|UBAP1_uc011loi.1_Missense_Mutation_p.P152A|UBAP1_uc011loj.1_Missense_Mutation_p.P180A|KIF24_uc010mkb.2_Intron|UBAP1_uc003ztz.2_Missense_Mutation_p.P116A	NM_016525	NP_057609	Q9NZ09	UBAP1_HUMAN	ubiquitin associated protein 1	116						cytoplasm					0			LUSC - Lung squamous cell carcinoma(29;0.00272)			AATGCCACCTCCTATTAACCC	0.512	NSCLC(109;1074 1634 14978 20375 39620)		NA											33	88					0	0	0.005524	0	0
UBAP1	51271	broad.mit.edu	37	9	34242063	34242063	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:34242063C>G	uc003ztx.2	+	4	1275	c.1040C>G	c.(1039-1041)TCT>TGT	p.S347C	UBAP1_uc010mka.1_Missense_Mutation_p.S383C|UBAP1_uc003zty.2_Missense_Mutation_p.S347C|UBAP1_uc011loi.1_Missense_Mutation_p.S383C|UBAP1_uc011loj.1_Missense_Mutation_p.S411C|KIF24_uc010mkb.2_Intron|UBAP1_uc003ztz.2_Missense_Mutation_p.S347C	NM_016525	NP_057609	Q9NZ09	UBAP1_HUMAN	ubiquitin associated protein 1	347						cytoplasm					0			LUSC - Lung squamous cell carcinoma(29;0.00272)			TCTGTTTTGTCTGTGTGCACA	0.498	NSCLC(109;1074 1634 14978 20375 39620)		NA											46	137					0	0	0.00361	0	0
TRPM3	80036	broad.mit.edu	37	9	73477941	73477941	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:73477941G>T	uc004aid.2	-	3	589	c.345C>A	c.(343-345)CTC>CTA	p.L115L	TRPM3_uc004ahw.2_5'UTR|TRPM3_uc004ahx.2_5'UTR|TRPM3_uc004ahy.2_5'UTR|TRPM3_uc004ahz.2_5'UTR|TRPM3_uc004aia.2_5'UTR|TRPM3_uc004aib.2_5'UTR|TRPM3_uc004aic.2_Silent_p.L115L|TRPM3_uc010mor.2_Silent_p.L115L|TRPM3_uc004aie.2_5'UTR|TRPM3_uc004aif.2_5'UTR|TRPM3_uc004aig.2_5'UTR|TRPM3_uc004aii.2_Silent_p.L117L	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	115	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						CATTTCGGGAGAGGCGACTTT	0.507			NA											31	76					1.02151e-06	1.09664e-06	0.002836	1	0
GCNT1	2650	broad.mit.edu	37	9	79117682	79117682	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:79117682G>T	uc010mpf.2	+	3	726	c.385G>T	c.(385-387)GTT>TTT	p.V129F	GCNT1_uc010mpg.2_Missense_Mutation_p.V129F|GCNT1_uc010mph.2_Missense_Mutation_p.V129F|GCNT1_uc004akf.3_Missense_Mutation_p.V129F|GCNT1_uc010mpi.2_Missense_Mutation_p.V129F|GCNT1_uc004akh.3_Missense_Mutation_p.V129F	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	129	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						TTCTATAGTGGTTCATCACAA	0.408			NA											55	64					2.69953e-25	3.41675e-25	0.00361	1	0
GKAP1	80318	broad.mit.edu	37	9	86368180	86368180	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:86368180T>G	uc004amy.2	-	9	1329	c.833A>C	c.(832-834)CAA>CCA	p.Q278P	GKAP1_uc004amz.2_Missense_Mutation_p.Q227P	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	278	Potential.				signal transduction	Golgi apparatus					0						AACCTCCCATTGAGTGATTAC	0.299			NA											23	92					0	0	0.00333	0	0
SPTLC1	10558	broad.mit.edu	37	9	94874764	94874764	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:94874764T>G	uc004arl.1	-	2	176	c.138A>C	c.(136-138)TTA>TTC	p.L46F	SPTLC1_uc011ltv.1_Missense_Mutation_p.L46F|SPTLC1_uc004arm.1_Missense_Mutation_p.L46F|SPTLC1_uc004arn.1_Missense_Mutation_p.L46F	NM_006415	NP_006406	O15269	SPTC1_HUMAN	serine palmitoyltransferase subunit 1 isoform a	46	Cytoplasmic (Potential).					integral to membrane|SPOTS complex	protein binding|pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			ovary(1)|breast(1)	2					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	ATCGTTCTTGTAATTTGTAAG	0.348			NA											18	96					0	0	0.002299	0	0
ECM2	1842	broad.mit.edu	37	9	95258649	95258649	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:95258649G>A	uc004ash.2	-	10	2113	c.2048C>T	c.(2047-2049)TCA>TTA	p.S683L	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Intron|ECM2_uc011lty.1_Missense_Mutation_p.S683L|ECM2_uc004asg.2_Missense_Mutation_p.S661L|ECM2_uc010mqz.1_Missense_Mutation_p.S105L	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	683	LRR 13.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						TCTTATGCATGAAAATGTGTA	0.299			NA											7	184					0	0	0.00308	0	0
GABBR2	9568	broad.mit.edu	37	9	101304157	101304157	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:101304157C>T	uc004ays.2	-	3	784	c.628G>A	c.(628-630)GAG>AAG	p.E210K		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	210	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	GAGCGTACCTCAGAGAACCTC	0.547			NA											15	41					0	0	0.00499	0	0
TNC	3371	broad.mit.edu	37	9	117848184	117848184	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:117848184C>T	uc004bjj.3	-	3	2188	c.1826G>A	c.(1825-1827)TGC>TAC	p.C609Y	TNC_uc010mvf.2_Missense_Mutation_p.C609Y	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	609	EGF-like 15.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GTTGCAGATGCAGCGGCCCGA	0.597			NA											50	14					0	0	0.00361	0	0
C9orf7	11094	broad.mit.edu	37	9	136330483	136330483	+	Silent	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:136330483C>T	uc011mdg.1	+	3	336	c.234C>T	c.(232-234)TTC>TTT	p.F78F	C9orf7_uc004cec.2_Intron|C9orf7_uc011mdh.1_Silent_p.F78F|C9orf7_uc011mdi.1_Intron|C9orf7_uc010nan.2_RNA	NM_017586	NP_060056	Q9UGQ2	FLOWR_HUMAN	hypothetical protein LOC11094 isoform a	78	Helical; (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(294;5.7e-39)|all cancers(34;1.83e-23)|OV - Ovarian serous cystadenocarcinoma(145;8.94e-08)|Epithelial(140;1.01e-06)		AGGCGCCCTTCTGCTGCCAGT	0.602			NA											297	73					0	0	0.00361	0	0
OLFM1	10439	broad.mit.edu	37	9	138011958	138011958	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:138011958G>A	uc010nar.2	+	6	1708	c.1392G>A	c.(1390-1392)TGG>TGA	p.W464*	OLFM1_uc004cfl.3_Nonsense_Mutation_p.W446*|OLFM1_uc004cfn.3_Nonsense_Mutation_p.W215*	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	464	Olfactomedin-like.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		TGTATGCCTGGAACAACGGCC	0.562			NA											34	154					0	0	0.005524	0	0
SOHLH1	402381	broad.mit.edu	37	9	138588565	138588565	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr9:138588565G>C	uc004cgl.2	-	5	615	c.554C>G	c.(553-555)GCG>GGG	p.A185G	SOHLH1_uc010nbe.2_Missense_Mutation_p.A185G	NM_001012415	NP_001012415	Q5JUK2	SOLH1_HUMAN	spermatogenesis and oogenesis specific basic	185					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			breast(1)|central_nervous_system(1)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.66e-07)|Epithelial(140;1.11e-06)|all cancers(34;6.45e-05)		CCTGGAGGACGCAAGGATGTG	0.657			NA											99	24					0	0	0.00361	0	0
XG	7499	broad.mit.edu	37	X	2712605	2712605	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:2712605G>A	uc011mhg.1	+	6	506	c.283G>A	c.(283-285)GGA>AGA	p.G95R	XG_uc004cqp.2_Missense_Mutation_p.G95R	NM_175569	NP_780778	P55808	XG_HUMAN	XG glycoprotein isoform 1 precursor	95	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CCGTGATGACGGACGCTACCC	0.612			NA											7	8					0	0	0.006214	0	0
RAI2	10742	broad.mit.edu	37	X	17820121	17820121	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:17820121G>C	uc004cyf.2	-	3	580	c.10C>G	c.(10-12)CTG>GTG	p.L4V	RAI2_uc004cyg.2_Missense_Mutation_p.L4V|RAI2_uc010nfa.2_Missense_Mutation_p.L4V|RAI2_uc004cyh.3_Missense_Mutation_p.L4V|RAI2_uc011miy.1_Missense_Mutation_p.L4V	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	4					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					TGGGACTGCAGGTCGTCCATC	0.488			NA											79	38					0	0	0.00361	0	0
EIF1AX	1964	broad.mit.edu	37	X	20153879	20153879	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:20153879T>G	uc004czt.2	-	3	389	c.181A>C	c.(181-183)ATC>CTC	p.I61L		NM_001412	NP_001403	P47813	IF1AX_HUMAN	X-linked eukaryotic translation initiation	61	S1-like.					cytosol	translation initiation factor activity			ovary(1)	1						TTTCCTCTGATGTGACATAAC	0.378			NA											45	25					0	0	0.00361	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627461	21627461	+	Silent	SNP	G	G	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:21627461G>T	uc004czx.1	+	20	2454	c.2418G>T	c.(2416-2418)CGG>CGT	p.R806R	CNKSR2_uc004czw.2_Silent_p.R806R|CNKSR2_uc011mjn.1_Silent_p.R757R|CNKSR2_uc011mjo.1_Silent_p.R776R|CNKSR2_uc004czy.2_Silent_p.R398R	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	806					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AGCACAGGCGGCAGTCTACCC	0.547			NA											32	16					8.16721e-17	9.84658e-17	0.002096	1	0
POLA1	5422	broad.mit.edu	37	X	24766437	24766437	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:24766437C>G	uc004dbl.2	+	25	2706	c.2683C>G	c.(2683-2685)CAA>GAA	p.Q895E		NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	895					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	GGATGGAGAACAAGAACAGAT	0.368			NA											12	5					0	0	0.00245	0	0
CDK16	5127	broad.mit.edu	37	X	47086599	47086599	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:47086599G>A	uc004dho.2	+	13	1657	c.1261G>A	c.(1261-1263)GAC>AAC	p.D421N	CDK16_uc011mli.1_Missense_Mutation_p.D427N|CDK16_uc011mlk.1_Missense_Mutation_p.D428N|CDK16_uc011mll.1_Missense_Mutation_p.D495N	NM_006201	NP_006192	Q00536	CDK16_HUMAN	PCTAIRE protein kinase 1 isoform 1	421	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)	1						CGACGGGGCCGACCTCCTCAC	0.582			NA											9	7					0	0	0.001855	0	0
ZNF157	7712	broad.mit.edu	37	X	47271817	47271817	+	Silent	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:47271817C>G	uc004dhr.1	+	4	414	c.345C>G	c.(343-345)CTC>CTG	p.L115L		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	115					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATAATGCCCTCAGGCATGATA	0.269			NA											34	20					0	0	0.004878	0	0
XAGE3	170626	broad.mit.edu	37	X	52896082	52896082	+	Splice_Site	SNP	A	A	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:52896082A>T	uc004dre.2	-	2	141	c.81_splice	c.e2+1	p.L27_splice	XAGE3_uc004drf.2_Splice_Site_p.L27_splice	NM_130776	NP_570132	Q8WTP9	GAGD4_HUMAN	XAGE-3 protein												0						TAAGGCACTCACCAGCATAGG	0.398			NA											27	16					0	0	0.00632	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64709193	64709193	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:64709193G>A	uc010nko.2	+	1	488	c.479G>A	c.(478-480)AGA>AAA	p.R160K		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	160							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						CCCAGCTCCAGAGAGATTGCA	0.438			NA											33	9					0	0	0.004289	0	0
OTUD6A	139562	broad.mit.edu	37	X	69282948	69282948	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:69282948C>A	uc004dxu.1	+	1	608	c.574C>A	c.(574-576)CCC>ACC	p.P192T		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	192	OTU.									lung(1)|skin(1)	2						CTTCAGCAACCCCGAGACCAG	0.612			NA											20	9					6.44725e-10	7.25052e-10	0.002299	1	0
CDX4	1046	broad.mit.edu	37	X	72667226	72667226	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:72667226C>A	uc011mqk.1	+	1	137	c.137C>A	c.(136-138)GCG>GAG	p.A46E		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	46						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					AATTTCGCTGCGGCACCGGCT	0.647			NA											11	5					0.00244969	0.00252705	0.00245	1	0
CXorf26	51260	broad.mit.edu	37	X	75396725	75396725	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:75396725C>G	uc004ecl.1	+	5	510	c.307C>G	c.(307-309)CCA>GCA	p.P103A		NM_016500	NP_057584	Q9BVG4	CX026_HUMAN	hypothetical protein LOC51260	103											0						GAAGTGGAGGCCATTCTGCTT	0.438			NA											32	12					0	0	0.005524	0	0
ATRX	546	broad.mit.edu	37	X	76972666	76972666	+	Silent	SNP	T	T	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:76972666T>A	uc004ecp.3	-	2	307	c.75A>T	c.(73-75)TCA>TCT	p.S25S	ATRX_uc004ecq.3_Silent_p.S25S|ATRX_uc004eco.3_5'UTR|ATRX_uc004ecr.2_Silent_p.S25S|ATRX_uc010nlx.1_Silent_p.S25S|ATRX_uc010nly.1_Intron	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	25					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ATTCTTCTGATGAGTGTGCAA	0.343			NA	Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						49	24					0	0	0.00361	0	0
ZNF711	7552	broad.mit.edu	37	X	84526329	84526329	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:84526329A>G	uc004eeo.2	+	9	2128	c.1781A>G	c.(1780-1782)CAT>CGT	p.H594R	ZNF711_uc004eep.2_Missense_Mutation_p.H594R|ZNF711_uc004eeq.2_Missense_Mutation_p.H640R|ZNF711_uc011mqy.1_Missense_Mutation_p.H193R	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	594	C2H2-type 7.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						CAGTGTCCTCATTGTGACCAT	0.433			NA											6	2					0	0	0.001984	0	0
AGTR2	186	broad.mit.edu	37	X	115304135	115304135	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:115304135C>T	uc004eqh.3	+	3	809	c.602C>T	c.(601-603)CCT>CTT	p.P201L		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	201	Extracellular (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						GCTTTCCCACCTGAGAAATAT	0.378			NA											30	23					0	0	0.003755	0	0
AMELY	266	broad.mit.edu	37	Y	6736332	6736332	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrY:6736332G>A	uc004fra.1	-	5	373	c.361C>T	c.(361-363)CAG>TAG	p.Q121*	AMELY_uc004fqz.2_Nonsense_Mutation_p.Q107*	NM_001143	NP_001134	Q99218	AMELY_HUMAN	amelogenin, Y-linked precursor	121	Gln-rich.				biomineral tissue development	proteinaceous extracellular matrix	structural constituent of tooth enamel				0						ATGGATTGCTGGCCAGGAACA	0.632			NA											53	20					0	0	0.00361	0	0
TMCO2	127391	broad.mit.edu	37	1	40713748	40713749	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:40713748_40713749insT	uc001cfe.2	+	1	176_177	c.83_84insT	c.(82-84)AGTfs	p.S28fs		NM_001008740	NP_001008740	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	28						integral to membrane				ovary(1)	1	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			ATACAAGCAAGTTTTTTGGGAG	0.406			NA											54	233	---	---	---	---	NA	NA	NA	NA	NA
ASPM	259266	broad.mit.edu	37	1	197057405	197057405	+	Frame_Shift_Del	DEL	T	T	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:197057405delT	uc001gtu.2	-	26	10399	c.10142delA	c.(10141-10143)AAGfs	p.K3381fs	ASPM_uc001gtv.2_Frame_Shift_Del_p.K1796fs|ASPM_uc001gtw.3_Frame_Shift_Del_p.K1229fs	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	3381					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						ATTTGTTGTCTTCAGTAAAAT	0.338			NA											94	79	---	---	---	---	NA	NA	NA	NA	NA
LOC642587	642587	broad.mit.edu	37	1	209603810	209603810	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr1:209603810delC	uc009xcn.2	+	3	535	c.152delC	c.(151-153)ACCfs	p.T51fs	LOC642587_uc010psk.1_5'Flank|MIR205_hsa-mir-205|MI0000285_5'Flank	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		AGGGTACGGACCCCACATGAG	0.522			NA											75	133	---	---	---	---	NA	NA	NA	NA	NA
CUEDC2	79004	broad.mit.edu	37	10	104184914	104184915	+	Frame_Shift_Ins	INS	-	-	G			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr10:104184914_104184915insG	uc001kvn.2	-	2	182_183	c.31_32insC	c.(31-33)CTCfs	p.L11fs	CUEDC2_uc001kvm.2_5'Flank	NM_024040	NP_076945	Q9H467	CUED2_HUMAN	CUE domain containing 2	11						cytoplasm|nucleus	protein binding				0		Colorectal(252;0.122)		Epithelial(162;9.17e-09)|all cancers(201;2.16e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		AAAGGCAAGGAGGGCTGCACTG	0.639			NA											33	77	---	---	---	---	NA	NA	NA	NA	NA
RB1	5925	broad.mit.edu	37	13	48934258	48934259	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr13:48934258_48934259insA	uc001vcb.2	+	7	879_880	c.713_714insA	c.(712-714)CCAfs	p.P238fs	RB1_uc010acs.1_RNA|RB1_uc010act.1_5'UTR	NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	238					androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(5)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTCAAAGAACCATATAGTAAGT	0.223			6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			12	37	---	---	---	---	NA	NA	NA	NA	NA
FAM179B	23116	broad.mit.edu	37	14	45481238	45481238	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr14:45481238delG	uc001wvv.2	+	7	3407	c.3198delG	c.(3196-3198)AAGfs	p.K1066fs	FAM179B_uc001wvw.2_Frame_Shift_Del_p.K1066fs|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1066	Ser-rich.						binding			skin(2)|upper_aerodigestive_tract(1)	3						CTTCTGCAAAGAAAAAAATTT	0.284			NA											8	89	---	---	---	---	NA	NA	NA	NA	NA
LASS3	204219	broad.mit.edu	37	15	101031128	101031129	+	Frame_Shift_Ins	INS	-	-	C			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr15:101031128_101031129insC	uc002bvz.2	-	5	683_684	c.181_182insG	c.(181-183)GCTfs	p.A61fs	LASS3_uc002bwa.2_Frame_Shift_Ins_p.A72fs|LASS3_uc002bwb.2_Frame_Shift_Ins_p.A61fs	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	61						endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			TAGAGGTGAAGCAACAAATCTA	0.322	NSCLC(135;1149 2482 10680 49908)		NA											22	41	---	---	---	---	NA	NA	NA	NA	NA
CCT8L2	150160	broad.mit.edu	37	22	17072854	17072854	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr22:17072854delC	uc002zlp.1	-	1	847	c.587delG	c.(586-588)GGCfs	p.G196fs		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	196					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CTTGAAGCTGCCGTCTAGTTC	0.612			NA											105	55	---	---	---	---	NA	NA	NA	NA	NA
IGSF11	152404	broad.mit.edu	37	3	118623578	118623579	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:118623578_118623579insA	uc003ebw.2	-	6	1017_1018	c.770_771insT	c.(769-771)TGCfs	p.C257fs	IGSF11_uc011biv.1_Intron|IGSF11_uc003ebx.2_Frame_Shift_Ins_p.C233fs|IGSF11_uc003eby.2_Frame_Shift_Ins_p.C256fs|IGSF11_uc003ebz.2_Frame_Shift_Ins_p.C232fs|IGSF11_uc010hqs.2_Frame_Shift_Ins_p.C256fs	NM_001015887	NP_001015887	Q5DX21	IGS11_HUMAN	immunoglobulin superfamily, member 11 isoform b	257	Helical; (Potential).				cell adhesion|regulation of growth	integral to membrane|plasma membrane	receptor activity				0						TTAGTGCAATGCAAAAAATGAT	0.342			NA											129	180	---	---	---	---	NA	NA	NA	NA	NA
MED12L	116931	broad.mit.edu	37	3	151148114	151148116	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	CAG	CAG	-	-	CAG	CAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr3:151148114_151148116delCAG	uc003eyp.2	+	42	6369_6371	c.6331_6333delCAG	c.(6331-6333)CAGdel	p.Q2115del	MED12L_uc011bnz.1_In_Frame_Del_p.Q1779del	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2115	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCAGCAGACCCAGCAGCAGCAGC	0.527			NA											7	142	---	---	---	---	NA	NA	NA	NA	NA
BEND4	389206	broad.mit.edu	37	4	42122225	42122225	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:42122225delC	uc003gwn.2	-	5	1813	c.1233delG	c.(1231-1233)GGGfs	p.G411fs	BEND4_uc003gwm.2_Frame_Shift_Del_p.G411fs|BEND4_uc011byy.1_Frame_Shift_Del_p.G411fs	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	411	BEN.										0						GGAGCCGTCTCCCATCTTTCT	0.458			NA											25	41	---	---	---	---	NA	NA	NA	NA	NA
LPHN3	23284	broad.mit.edu	37	4	62897312	62897312	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr4:62897312delG	uc010ihh.2	+	20	3544	c.3371delG	c.(3370-3372)TGTfs	p.C1124fs	LPHN3_uc003hcq.3_Frame_Shift_Del_p.C1124fs|LPHN3_uc003hct.2_Frame_Shift_Del_p.C508fs	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1102	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						ATTTTCCATTGTGTCCTACAG	0.313			NA											19	36	---	---	---	---	NA	NA	NA	NA	NA
SPRY4	81848	broad.mit.edu	37	5	141694361	141694363	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	TGC	TGC	-	-	TGC	TGC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:141694361_141694363delTGC	uc003lml.2	-	2	570_572	c.311_313delGCA	c.(310-315)AGCACA>ACA	p.S104del	SPRY4_uc010jgi.1_In_Frame_Del_p.S127del	NM_001127496	NP_001120968	Q9C004	SPY4_HUMAN	sprouty homolog 4 isoform 2	104	Poly-Ser.				multicellular organismal development	cytoplasm|ruffle membrane	protein binding			ovary(1)|lung(1)	2		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGAGGATGTGCTGCTGCTGCT	0.66			NA							Testicular_Cancer_Familial_Clustering_of				7	190	---	---	---	---	NA	NA	NA	NA	NA
CCNJL	79616	broad.mit.edu	37	5	159686536	159686536	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr5:159686536delG	uc003lyb.1	-	5	919	c.667delC	c.(667-669)CGCfs	p.R223fs	CCNJL_uc011dee.1_Frame_Shift_Del_p.R175fs|CCNJL_uc003lyc.1_RNA|CCNJL_uc011def.1_Frame_Shift_Del_p.R175fs	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	223						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTGGTCTTGCGGGGGCAGGTG	0.627			NA											26	129	---	---	---	---	NA	NA	NA	NA	NA
ARID1B	57492	broad.mit.edu	37	6	157099403	157099405	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	CAG	CAG	-	-	CAG	CAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr6:157099403_157099405delCAG	uc003qqn.2	+	1	318_320	c.166_168delCAG	c.(166-168)CAGdel	p.Q73del	ARID1B_uc003qqo.2_In_Frame_Del_p.Q73del|ARID1B_uc003qqp.2_In_Frame_Del_p.Q73del	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	131	Gln-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		AAACCAGTTCcagcagcagcagc	0.118			NA											3	5	---	---	---	---	NA	NA	NA	NA	NA
DCAF4L2	138009	broad.mit.edu	37	8	88885347	88885347	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chr8:88885347delG	uc003ydz.2	-	1	950	c.853delC	c.(853-855)CTGfs	p.L285fs		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	285	WD 1.									ovary(1)	1						GATGACACCAGGAATTGGCCA	0.498			NA											28	53	---	---	---	---	NA	NA	NA	NA	NA
IL3RA	3563	broad.mit.edu	37	X	1467367	1467376	+	Frame_Shift_Del	DEL	GTGAAGTGAC	GTGAAGTGAC	-	rs141873872	by1000genomes	TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	GTGAAGTGAC	GTGAAGTGAC	-	-	GTGAAGTGAC	GTGAAGTGAC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:1467367_1467376delGTGAAGTGAC	uc004cps.2	+	4	576_585	c.227_236delGTGAAGTGAC	c.(226-237)TGTGAAGTGACCfs	p.C76fs	IL3RA_uc011mhd.1_Intron	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	76_79	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	ATTTCCTTATGTGAAGTGACCAACTACACC	0.433			NA											30	366	---	---	---	---	NA	NA	NA	NA	NA
MED12	9968	broad.mit.edu	37	X	70339996	70339997	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-95-7947-01A-11D-2184-08	TCGA-95-7947-10A-01D-2184-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9a9ed047-e91a-46e2-a054-82f000bc35ea	81a2d022-e55f-49c7-856c-9258fd01c9e5	g.chrX:70339996_70339997insAG	uc004dyy.2	+	4	728_729	c.529_530insAG	c.(529-531)AAGfs	p.K177fs	MED12_uc011mpq.1_Frame_Shift_Ins_p.K177fs|MED12_uc004dyz.2_Frame_Shift_Ins_p.K177fs|MED12_uc004dza.2_Frame_Shift_Ins_p.K24fs	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	177					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CAAGGTTAAGAAGAGACATGTT	0.49			NA											61	40	---	---	---	---	NA	NA	NA	NA	NA
