Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VPS13D	55187	broad.mit.edu	37	1	12333079	12333079	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:12333079C>A	uc001atv.2	+	18	2264	c.2123C>A	c.(2122-2124)ACC>AAC	p.T708N	VPS13D_uc001atw.2_Missense_Mutation_p.T708N|VPS13D_uc001atx.2_5'Flank	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	708					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AAACGATGGACCGTGCGGCTG	0.428			NA											26	56					1.12875e-08	1.55935e-08	0.00632	1	0
CROCC	9696	broad.mit.edu	37	1	17296381	17296381	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:17296381G>T	uc001azt.2	+	33	5472	c.5403G>T	c.(5401-5403)CTG>CTT	p.L1801L	CROCC_uc001azu.2_Silent_p.L1104L|CROCC_uc001azv.2_Silent_p.L137L	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	1801					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		TGGCTGACCTGGAACTGCAGC	0.662			NA											14	45					1.05317e-09	1.488e-09	0.00245	1	0
C1orf94	84970	broad.mit.edu	37	1	34663381	34663381	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:34663381G>T	uc001bxs.3	+	2	705	c.306G>T	c.(304-306)CTG>CTT	p.L102L	C1orf94_uc001bxt.2_Silent_p.L292L	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	102							protein binding				0		Myeloproliferative disorder(586;0.0393)				TTCTGCTGCTGCCTCCCCGAC	0.597			NA											19	43					1.56452e-12	2.48327e-12	0.007413	1	0
THRAP3	9967	broad.mit.edu	37	1	36752483	36752483	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:36752483G>C	uc001cae.3	+	4	876	c.652G>C	c.(652-654)GAG>CAG	p.E218Q	THRAP3_uc001caf.3_Missense_Mutation_p.E218Q|THRAP3_uc001cag.1_Missense_Mutation_p.E218Q	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	218	Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AAAAGCATCTGAGAGCTCGAA	0.577	Pancreas(129;785 1795 20938 23278 32581)		NA	T	USP6	aneurysmal bone cysts								31	75					0	0	0.007291	0	0
KANK4	163782	broad.mit.edu	37	1	62703954	62703954	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:62703954G>T	uc001dah.3	-	10	3360	c.2983C>A	c.(2983-2985)CTG>ATG	p.L995M	KANK4_uc001dai.3_Missense_Mutation_p.L367M|KANK4_uc001daf.3_Missense_Mutation_p.L133M|KANK4_uc001dag.3_Missense_Mutation_p.L351M	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	995										ovary(3)|skin(2)|lung(1)	6						AGCCCCTACAGCCCCAGGGAC	0.617			NA											8	40					6.5536e-12	1.01854e-11	0.00308	1	0
DIRAS3	9077	broad.mit.edu	37	1	68512327	68512327	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:68512327G>A	uc001ded.2	-	2	949	c.654C>T	c.(652-654)ACC>ACT	p.T218T	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	218					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						GCTTCTCAGTGGTGTTGGGCA	0.507			NA											48	91					0	0	0.00361	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	77094406	77094406	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:77094406G>T	uc001dhh.2	+	5	996	c.833G>T	c.(832-834)AGG>ATG	p.R278M	ST6GALNAC3_uc010orh.1_Missense_Mutation_p.R177M	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	278	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						GGGGGTCATAGGTTTATCACT	0.378			NA											14	36					1.5842e-08	2.18047e-08	0.001855	1	0
CLCA4	22802	broad.mit.edu	37	1	87025627	87025627	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:87025627A>T	uc009wcs.2	+	2	216	c.172A>T	c.(172-174)ACA>TCA	p.T58S	CLCA4_uc009wct.2_5'UTR|CLCA4_uc009wcu.2_5'UTR	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	58						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TATGGTGACTACAGCTTCTAC	0.343			NA											42	105					0	0	0.009718	0	0
VCAM1	7412	broad.mit.edu	37	1	101194697	101194697	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:101194697C>T	uc001dti.2	+	5	1083	c.963C>T	c.(961-963)CCC>CCT	p.P321P	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Silent_p.P259P	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	321	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CCCCTGGACCCCGGATTGCTG	0.453			NA											48	118					0	0	0.00361	0	0
S1PR1	1901	broad.mit.edu	37	1	101704645	101704645	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:101704645G>A	uc001dud.2	+	2	619	c.105G>A	c.(103-105)CTG>CTA	p.L35L	S1PR1_uc009weg.2_Silent_p.L35L	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	35	Extracellular (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						CGGGAAAGCTGAATATCAGCG	0.517			NA									OREG0013620	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	60					0	0	0.007291	0	0
AMY2A	279	broad.mit.edu	37	1	104160118	104160118	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:104160118C>A	uc001dut.2	+	1	120	c.56C>A	c.(55-57)CCA>CAA	p.P19Q	AMY2A_uc010ouq.1_Missense_Mutation_p.P19Q	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	19					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	CAGTATTCCCCAAATACACAA	0.398			NA											62	143					1.52378e-38	2.84184e-38	0.00361	1	0
NOTCH2	4853	broad.mit.edu	37	1	120491110	120491110	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:120491110G>T	uc001eik.2	-	17	2935	c.2679C>A	c.(2677-2679)GGC>GGA	p.G893G	NOTCH2_uc001eil.2_Silent_p.G893G	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	893	EGF-like 23; calcium-binding (Potential).|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACATGTAGCTGCCCTGGGTGT	0.517			NA	N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome		OREG0013733	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	70					4.68919e-08	6.31432e-08	0.008291	1	0
NOTCH2	4853	broad.mit.edu	37	1	120509106	120509106	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:120509106T>A	uc001eik.2	-	9	1716	c.1460A>T	c.(1459-1461)AAA>ATA	p.K487I	NOTCH2_uc001eil.2_Missense_Mutation_p.K487I|NOTCH2_uc001eim.3_Missense_Mutation_p.K404I	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	487	Extracellular (Potential).|EGF-like 12; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATGCACACCTTTGAAACCTAA	0.398			NA	N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				25	52					0	0	0.00632	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145273189	145273189	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:145273189C>G	uc001emn.3	+	3	413	c.43C>G	c.(43-45)CCA>GCA	p.P15A	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Missense_Mutation_p.P15A|NOTCH2NL_uc001emo.2_Missense_Mutation_p.P15A|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	15	EGF-like 1.				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						ATACAGATGTCCAGAAGGCTT	0.463			NA											10	108					0	0	0.004007	0	0
MCL1	4170	broad.mit.edu	37	1	150551692	150551692	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:150551692C>A	uc001euz.2	-	1	445	c.315G>T	c.(313-315)GCG>GCT	p.A105A	MCL1_uc010pch.1_5'UTR|MCL1_uc001eva.2_Silent_p.A105A	NM_021960	NP_068779	Q07820	MCL1_HUMAN	myeloid cell leukemia sequence 1 isoform 1	105	PEST-like.				anti-apoptosis|apoptosis|cell fate determination|cellular homeostasis|multicellular organismal development|response to cytokine stimulus	integral to membrane|mitochondrial outer membrane|nucleoplasm	BH3 domain binding|protein binding|protein channel activity|protein heterodimerization activity				0	all_cancers(9;1.69e-53)|all_epithelial(9;1.95e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CAAGCGGCGCCGCGCGGCGGG	0.746			NA											10	16					2.17888e-05	2.60488e-05	0.006214	1	0
FLG2	388698	broad.mit.edu	37	1	152327770	152327770	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:152327770G>T	uc001ezw.3	-	3	2565	c.2492C>A	c.(2491-2493)TCT>TAT	p.S831Y	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	831	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCAAAGCCAGAGGATTGTCC	0.517			NA											135	339					8.44338e-69	1.5906e-68	0.00361	1	0
NES	10763	broad.mit.edu	37	1	156640547	156640547	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:156640547C>G	uc001fpq.2	-	4	3566	c.3433G>C	c.(3433-3435)GAG>CAG	p.E1145Q		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1145	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCTGCCTCCTCTAGGTCCTTT	0.602			NA											24	70					0	0	0.002299	0	0
MRPL24	79590	broad.mit.edu	37	1	156708225	156708225	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:156708225C>A	uc001fpw.1	-	3	328	c.189G>T	c.(187-189)GAG>GAT	p.E63D	MRPL24_uc001fpx.1_Missense_Mutation_p.E63D	NM_024540	NP_078816	Q96A35	RM24_HUMAN	mitochondrial ribosomal protein L24 precursor	63	KOW.				translation	mitochondrion|ribosome	structural constituent of ribosome				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTTCTAGGATCTCCACCTGTG	0.572			NA											38	167					6.90743e-12	1.06907e-11	0.003755	1	0
FCRL5	83416	broad.mit.edu	37	1	157508895	157508895	+	Silent	SNP	C	C	A	rs139032379	byFrequency	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:157508895C>A	uc001fqu.2	-	7	1541	c.1383G>T	c.(1381-1383)GCG>GCT	p.A461A	FCRL5_uc009wsm.2_Silent_p.A461A|FCRL5_uc010phv.1_Silent_p.A461A|FCRL5_uc010phw.1_Silent_p.A376A|FCRL5_uc001fqv.1_Silent_p.A461A|FCRL5_uc010phx.1_Silent_p.A212A	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	461	Extracellular (Potential).|Ig-like C2-type 4.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				AGAGGCTCACCGCCTTACTGC	0.582			NA											15	43					2.31682e-05	2.76094e-05	0.003163	1	0
SPTA1	6708	broad.mit.edu	37	1	158609710	158609710	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:158609710G>C	uc001fst.1	-	34	5024	c.4825C>G	c.(4825-4827)CAA>GAA	p.Q1609E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1609	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AACCTCTGTTGACGACTGGCC	0.463			NA											42	82					0	0	0.00623	0	0
MNDA	4332	broad.mit.edu	37	1	158815391	158815391	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:158815391G>A	uc001fsz.1	+	5	785	c.585G>A	c.(583-585)CAG>CAA	p.Q195Q		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	195					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AGGAAACCCAGGCCCAACGGC	0.383			NA											14	34					0	0	0.00245	0	0
LMX1A	4009	broad.mit.edu	37	1	165179965	165179965	+	Nonsense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:165179965G>A	uc001gcy.1	-	5	939	c.718C>T	c.(718-720)CAG>TAG	p.Q240*	LMX1A_uc001gcz.1_Nonsense_Mutation_p.Q240*|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_5'UTR	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	240	Homeobox.|Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					AACCACACCTGGACGACACGG	0.478			NA											10	31					0	0	0.008291	0	0
BAT2L2	23215	broad.mit.edu	37	1	171510393	171510393	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:171510393G>T	uc010pmg.1	+	16	4048	c.3782G>T	c.(3781-3783)CGG>CTG	p.R1261L	BAT2L2_uc010pmh.1_Missense_Mutation_p.R238L	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	1261							protein C-terminus binding				0						AGACGACAGCGGGGTTCAGAG	0.473			NA											11	44					6.40141e-05	7.48504e-05	0.000978	1	0
RGS21	431704	broad.mit.edu	37	1	192335252	192335252	+	Nonstop_Mutation	SNP	T	T	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:192335252T>G	uc001gsh.2	+	5	631	c.457T>G	c.(457-459)TGA>GGA	p.*153G		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	153					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|skin(1)	2						CCCTTTTTTGTGAGGAAGGTA	0.328			NA											8	13					0	0	0.006214	0	0
ASPM	259266	broad.mit.edu	37	1	197091620	197091620	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:197091620T>A	uc001gtu.2	-	14	3753	c.3496A>T	c.(3496-3498)ACT>TCT	p.T1166S	ASPM_uc001gtv.2_Missense_Mutation_p.T1166S|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1166	CH 2.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						ACAGTTTGAGTAGTACGCTGA	0.403			NA											9	31					0	0	0.006214	0	0
ZBTB41	360023	broad.mit.edu	37	1	197144219	197144219	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:197144219A>G	uc001gtx.1	-	8	1975	c.1906T>C	c.(1906-1908)TGT>CGT	p.C636R	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	636	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						CATTTTCCACATTCTTCACAC	0.338			NA											21	56					0	0	0.001882	0	0
CENPF	1063	broad.mit.edu	37	1	214828619	214828619	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:214828619G>A	uc001hkm.2	+	17	8532	c.8358G>A	c.(8356-8358)AAG>AAA	p.K2786K		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2882	Potential.|Sufficient for self-association.|Sufficient for centromere localization.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AGTTGAAGAAGGAAAATGAAC	0.323	Colon(80;575 1284 11000 14801 43496)		NA											6	28					0	0	0.001168	0	0
USH2A	7399	broad.mit.edu	37	1	216390770	216390770	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:216390770G>T	uc001hku.1	-	15	3503	c.3116C>A	c.(3115-3117)GCA>GAA	p.A1039E	USH2A_uc001hkv.2_Missense_Mutation_p.A1039E	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1039	Laminin EGF-like 10.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CAAGTGGCTTGCACTGGGAAC	0.383			NA								HNSCC(13;0.011)			15	19					7.93312e-07	1.00992e-06	0.00245	1	0
HHIPL2	79802	broad.mit.edu	37	1	222700353	222700353	+	Missense_Mutation	SNP	T	T	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:222700353T>G	uc001hnh.1	-	7	1821	c.1763A>C	c.(1762-1764)TAT>TCT	p.Y588S		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	588					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		ACGTGGTGCATAGGCACTTGG	0.433			NA											11	15					0	0	0.000978	0	0
LIN9	286826	broad.mit.edu	37	1	226453251	226453251	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:226453251C>G	uc001hqa.2	-	10	1379	c.1069G>C	c.(1069-1071)GAA>CAA	p.E357Q	LIN9_uc001hqb.2_Missense_Mutation_p.E322Q|LIN9_uc001hqc.2_Missense_Mutation_p.E289Q|LIN9_uc009xel.1_Missense_Mutation_p.E322Q	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	341					cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		ATAAGAAATTCTACTGGAAAA	0.338	Ovarian(197;1696 2974 11248 14117)		NA											7	12					0	0	0.00308	0	0
OBSCN	84033	broad.mit.edu	37	1	228509182	228509182	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:228509182G>T	uc009xez.1	+	55	14684	c.14640G>T	c.(14638-14640)CAG>CAT	p.Q4880H	OBSCN_uc001hsn.2_Missense_Mutation_p.Q4880H	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4880	IQ.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGAAGATCCAGGCTGCCTTTA	0.597			NA											7	20					0.00198382	0.00215106	0.001984	1	0
NUP133	55746	broad.mit.edu	37	1	229600529	229600529	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:229600529C>A	uc001htn.2	-	18	2485	c.2393G>T	c.(2392-2394)CGA>CTA	p.R798L		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	798					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				CACGATGTTTCGGAGGTTGCT	0.493			NA											19	43					1.64113e-05	1.97466e-05	0.010504	1	0
B3GALNT2	148789	broad.mit.edu	37	1	235629009	235629009	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:235629009T>A	uc001hxc.2	-	7	1014	c.785A>T	c.(784-786)CAT>CTT	p.H262L	B3GALNT2_uc001hxd.1_Missense_Mutation_p.H303L	NM_152490	NP_689703	Q8NCR0	B3GL2_HUMAN	beta-1,3-N-acetylgalactosaminyltransferase 2	262	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			breast(1)	1	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.0539)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000117)			CAAGAATTCATGAGGCAATGC	0.358			NA											4	90					0	0	0.000602	0	0
RYR2	6262	broad.mit.edu	37	1	237941996	237941996	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:237941996G>T	uc001hyl.1	+	88	11926	c.11806G>T	c.(11806-11808)GCA>TCA	p.A3936S	RYR2_uc010pya.1_Missense_Mutation_p.A351S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3936					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACAGAGTTTGGCACACAGCAG	0.448			NA											19	51					6.44725e-10	9.21389e-10	0.002299	1	0
OR2C3	81472	broad.mit.edu	37	1	247694869	247694869	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:247694869G>T	uc009xgy.2	-	2	1307	c.945C>A	c.(943-945)GGC>GGA	p.G315G	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	315	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			GCGCCAGCTTGCCTGCAGAGC	0.522			NA											20	35					4.96729e-08	6.66475e-08	0.008871	1	0
TUBB8	347688	broad.mit.edu	37	10	94813	94813	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:94813C>A	uc001ifi.2	-	2	97	c.97G>T	c.(97-99)GCT>TCT	p.A33S	TUBB8_uc009xhe.2_Missense_Mutation_p.A33S|TUBB8_uc010pzs.1_5'UTR	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	33					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		TAGGTGCCAGCGGAGTCGATG	0.652	Pancreas(192;2041 3010 9013 18103)		NA											4	6					0.00024832	0.000284121	0.009096	1	0
ITIH5	80760	broad.mit.edu	37	10	7608307	7608307	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:7608307C>A	uc001ijq.2	-	13	2292	c.2213G>T	c.(2212-2214)CGC>CTC	p.R738L	ITIH5_uc001ijp.2_Missense_Mutation_p.R524L	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	738					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CAAGTAAGTGCGCTGTTTCTT	0.502			NA											12	50					2.27111e-07	2.9414e-07	0.001368	1	0
ITIH5	80760	broad.mit.edu	37	10	7627984	7627984	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:7627984G>T	uc001ijq.2	-	8	1067	c.988C>A	c.(988-990)CGT>AGT	p.R330S	ITIH5_uc001ijp.2_Missense_Mutation_p.R116S|ITIH5_uc001ijr.1_Missense_Mutation_p.R330S	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	330	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ATACTGAAACGGTCCTGGGGT	0.468			NA											6	36					0.00116845	0.00127809	0.001168	1	0
MTPAP	55149	broad.mit.edu	37	10	30653638	30653638	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:30653638C>A	uc001ivb.3	-	9	1916	c.544G>T	c.(544-546)GGT>TGT	p.G182C	LOC729668_uc001ivd.2_RNA|uc001ive.1_5'Flank	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	Error:Variant_position_missing_in_Q9NVV4_after_alignment					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						TACTCACCACCCTGCTTGTCA	0.647			NA											7	16					8.12818e-05	9.4449e-05	0.001984	1	0
FRMPD2	143162	broad.mit.edu	37	10	49450362	49450362	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:49450362G>A	uc001jgi.2	-	5	516	c.409C>T	c.(409-411)CTG>TTG	p.L137L	FRMPD2_uc001jgh.2_Silent_p.L106L|FRMPD2_uc001jgj.2_Silent_p.L115L	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	137	KIND.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		ATGGTCAGCAGGATGGAGTGC	0.612			NA											20	61					0	0	0.010504	0	0
LZTS2	84445	broad.mit.edu	37	10	102762640	102762640	+	Silent	SNP	A	A	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:102762640A>C	uc001ksj.2	+	2	414	c.345A>C	c.(343-345)GCA>GCC	p.A115A	LZTS2_uc010qpw.1_Silent_p.A115A|LZTS2_uc001ksk.2_Silent_p.A115A|LZTS2_uc001ksl.2_Silent_p.A115A|LZTS2_uc001ksm.2_RNA	NM_032429	NP_115805	Q9BRK4	LZTS2_HUMAN	leucine zipper, putative tumor suppressor 2	115	Required for centrosomal localization (By similarity).				cell division|mitosis|Wnt receptor signaling pathway	membrane|microtubule|microtubule organizing center				ovary(2)|large_intestine(1)|breast(1)	4				Epithelial(162;7.3e-09)|all cancers(201;3.72e-07)		AGCAGCGGGCACACAATGCCC	0.602	Esophageal Squamous(8;38 437 13604 19902 37640)		NA											14	71					0	0	0.003163	0	0
BTRC	8945	broad.mit.edu	37	10	103190200	103190200	+	Silent	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:103190200A>T	uc001kta.2	+	2	260	c.147A>T	c.(145-147)ACA>ACT	p.T49T	BTRC_uc001ksz.1_Intron|BTRC_uc001ktb.2_Intron|BTRC_uc001ktc.2_Silent_p.T49T	NM_033637	NP_378663	Q9Y297	FBW1A_HUMAN	beta-transducin repeat containing protein	49					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|positive regulation of proteolysis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|viral reproduction|Wnt receptor signaling pathway	cytosol|nucleus|SCF ubiquitin ligase complex				ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;1.05e-08)|all cancers(201;6.59e-07)		GCGCACTCACAGCTTTCCAGG	0.522			NA											17	34					0	0	0.006122	0	0
SORCS1	114815	broad.mit.edu	37	10	108924037	108924037	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:108924037C>T	uc001kym.2	-	1	256	c.248G>A	c.(247-249)GGG>GAG	p.G83E	SORCS1_uc001kyl.2_Missense_Mutation_p.G83E|SORCS1_uc009xxs.2_Missense_Mutation_p.G83E|SORCS1_uc001kyn.1_Missense_Mutation_p.G83E|SORCS1_uc001kyo.2_Missense_Mutation_p.G83E	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	83	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CGCTCGGTCCCCGGGGGCCAC	0.726			NA											12	14					0	0	0.000978	0	0
GPAM	57678	broad.mit.edu	37	10	113933468	113933468	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:113933468C>A	uc009xxy.1	-	7	747	c.549G>T	c.(547-549)CCG>CCT	p.P183P	GPAM_uc001kzp.2_Silent_p.P183P|GPAM_uc001kzq.1_Silent_p.P183P	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	183					phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		TGATCATTGCCGGTGAGACAG	0.403	Ovarian(161;1017 2606 18293 52943)		NA											14	52					1.49906e-05	1.80954e-05	0.00245	1	0
OR52K2	119774	broad.mit.edu	37	11	4470638	4470638	+	Silent	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:4470638A>G	uc001lyz.1	+	1	69	c.69A>G	c.(67-69)GAA>GAG	p.E23E		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCCTGGAACACCTGCACA	0.517			NA											38	64					0	0	0.005524	0	0
OR52J3	119679	broad.mit.edu	37	11	5068235	5068235	+	Silent	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:5068235C>G	uc010qyv.1	+	1	480	c.480C>G	c.(478-480)CCC>CCG	p.P160P		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTACACTTCCCATGGTCTATC	0.463			NA											17	59					0	0	0.004007	0	0
OR10A4	283297	broad.mit.edu	37	11	6898520	6898520	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:6898520G>T	uc010rat.1	+	1	642	c.642G>T	c.(640-642)CTG>CTT	p.L214L		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CTTTCTTGCTGATCCTGGGAT	0.527			NA											15	56					7.93312e-07	1.00992e-06	0.00245	1	0
COPB1	1315	broad.mit.edu	37	11	14479392	14479392	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:14479392G>A	uc001mli.2	-	22	3147	c.2840C>T	c.(2839-2841)TCA>TTA	p.S947L	COPB1_uc001mlg.2_Missense_Mutation_p.S947L|COPB1_uc001mlh.2_Missense_Mutation_p.S947L	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	947					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						TTTCTTCTGTGACAAGTTGAT	0.289			NA											4	16					0	0	0.009096	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136549	40136549	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:40136549C>A	uc001mxa.1	-	2	3258	c.1294G>T	c.(1294-1296)GTT>TTT	p.V432F	LRRC4C_uc001mxc.1_Missense_Mutation_p.V428F|LRRC4C_uc001mxd.1_Missense_Mutation_p.V428F|LRRC4C_uc001mxb.1_Missense_Mutation_p.V428F	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	432	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GTATTCCCAACGGAATTACTC	0.438			NA											35	114					2.80507e-11	4.236e-11	0.002445	1	0
LRRC4C	57689	broad.mit.edu	37	11	40136878	40136878	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:40136878G>T	uc001mxa.1	-	2	2929	c.965C>A	c.(964-966)TCG>TAG	p.S322*	LRRC4C_uc001mxc.1_Nonsense_Mutation_p.S318*|LRRC4C_uc001mxd.1_Nonsense_Mutation_p.S318*|LRRC4C_uc001mxb.1_Nonsense_Mutation_p.S318*	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	322	LRRCT.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				AGCTGTGTTCGAGGGGGCCAT	0.498			NA											17	48					2.23348e-06	2.82403e-06	0.004007	1	0
ZNF408	79797	broad.mit.edu	37	11	46726982	46726982	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:46726982C>T	uc001nde.1	+	5	1962	c.1732C>T	c.(1732-1734)CCC>TCC	p.P578S	ZNF408_uc010rgw.1_Missense_Mutation_p.P570S	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	578					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						CGGAGAGAGGCCCTTTCCCTG	0.667	Pancreas(79;698 1390 6545 18745 34127)|Esophageal Squamous(120;1014 1625 12837 24601 49525)		NA											7	37					0	0	0.001984	0	0
OR4C16	219428	broad.mit.edu	37	11	55340160	55340160	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:55340160C>G	uc010rih.1	+	1	557	c.557C>G	c.(556-558)GCC>GGC	p.A186G		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TTGAAACAAGCCTGTTCAGAA	0.428			NA											21	74					0	0	0.010504	0	0
OR5B12	390191	broad.mit.edu	37	11	58207463	58207463	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:58207463G>A	uc010rkh.1	-	1	162	c.162C>T	c.(160-162)CAC>CAT	p.H54H		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	54	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				ACATGGGGGTGTGGAGACAGG	0.493			NA											11	49					0	0	0.008291	0	0
NRXN2	9379	broad.mit.edu	37	11	64434943	64434943	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:64434943G>T	uc001oar.2	-	10	2016	c.1577C>A	c.(1576-1578)CCC>CAC	p.P526H	NRXN2_uc001oas.2_Missense_Mutation_p.P495H|NRXN2_uc001oaq.2_Missense_Mutation_p.P193H	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CAGCCCATTGGGCTCGGTGGT	0.657			NA											22	56					6.33239e-15	1.05446e-14	0.010504	1	0
GRM5	2915	broad.mit.edu	37	11	88300451	88300451	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:88300451G>T	uc001pcq.2	-	7	2600	c.2400C>A	c.(2398-2400)ATC>ATA	p.I800I	GRM5_uc009yvm.2_Silent_p.I800I	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	800	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	AACACATGGTGATGATTTTGT	0.488			NA											25	52					1.64293e-13	2.66441e-13	0.00333	1	0
GUCY1A2	2977	broad.mit.edu	37	11	106849374	106849374	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:106849374C>T	uc001pjg.1	-	3	848	c.458G>A	c.(457-459)GGA>GAA	p.G153E	GUCY1A2_uc010rvo.1_Missense_Mutation_p.G153E|GUCY1A2_uc009yxn.1_Missense_Mutation_p.G153E	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	153					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CTGAAGAATTCCTGAGACATC	0.363			NA											7	21					0	0	0.001984	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106849452	106849452	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:106849452T>A	uc001pjg.1	-	3	770	c.380A>T	c.(379-381)GAA>GTA	p.E127V	GUCY1A2_uc010rvo.1_Missense_Mutation_p.E127V|GUCY1A2_uc009yxn.1_Missense_Mutation_p.E127V	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	127					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		GAAATTCTTTTCTGCATCCCT	0.378			NA											5	14					0	0	0.001168	0	0
C11orf71	54494	broad.mit.edu	37	11	114270704	114270704	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:114270704A>G	uc001pou.3	-	1	552	c.350T>C	c.(349-351)ATC>ACC	p.I117T	C11orf71_uc001pot.1_Intron|RBM7_uc001pov.2_5'Flank|RBM7_uc001pow.2_5'Flank|RBM7_uc001pox.2_5'Flank	NM_019021	NP_061894	Q6IPW1	CK071_HUMAN	hypothetical protein LOC54494	117											0		all_cancers(61;1.15e-11)|all_epithelial(67;5.3e-06)|all_hematologic(158;0.000303)|Acute lymphoblastic leukemia(157;0.000966)|Melanoma(852;0.00153)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.0818)|Prostate(24;0.104)		BRCA - Breast invasive adenocarcinoma(274;2.6e-06)|Epithelial(105;4.31e-05)|all cancers(92;0.00036)		TCGAGCTGCGATAACACCTCC	0.478			NA											8	43					0	0	0.00308	0	0
UBASH3B	84959	broad.mit.edu	37	11	122653759	122653759	+	Splice_Site	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr11:122653759A>T	uc001pyi.3	+	5	962	c.602_splice	c.e5-2	p.E201_splice		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,							cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		TCCTTTTTCCAGAAGTGCATG	0.453			NA											47	234					0	0	0.00361	0	0
CACNA1C	775	broad.mit.edu	37	12	2614017	2614017	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:2614017G>A	uc009zdu.1	+	8	1436	c.1123G>A	c.(1123-1125)GCC>ACC	p.A375T	CACNA1C_uc009zdv.1_Missense_Mutation_p.A372T|CACNA1C_uc001qkb.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkc.2_Missense_Mutation_p.A375T|CACNA1C_uc001qke.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkf.2_Missense_Mutation_p.A375T|CACNA1C_uc001qjz.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkd.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkg.2_Missense_Mutation_p.A375T|CACNA1C_uc009zdw.1_Missense_Mutation_p.A375T|CACNA1C_uc001qkh.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkl.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkp.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkr.2_Missense_Mutation_p.A375T|CACNA1C_uc001qku.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkq.2_Missense_Mutation_p.A375T|CACNA1C_uc001qks.2_Missense_Mutation_p.A375T|CACNA1C_uc001qkt.2_Missense_Mutation_p.A375T|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Intron|CACNA1C_uc001qkj.1_Intron|CACNA1C_uc001qkk.1_Intron|CACNA1C_uc001qkm.1_Intron|CACNA1C_uc009zdy.1_Intron|CACNA1C_uc001qkv.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	375	I.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGTCAATGATGCCGTAGGAAG	0.522			NA											3	18					0	0	0.004672	0	0
KCNA6	3742	broad.mit.edu	37	12	4919702	4919702	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:4919702G>T	uc001qng.2	+	1	1361	c.495G>T	c.(493-495)GAG>GAT	p.E165D		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	165						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TGCTCTTTGAGTACCCAGAGA	0.637			NA								HNSCC(72;0.22)			14	35					1.49906e-05	1.80954e-05	0.00245	1	0
ARHGDIB	397	broad.mit.edu	37	12	15095548	15095548	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:15095548A>G	uc001rcq.1	-	6	618	c.514T>C	c.(514-516)TAC>CAC	p.Y172H	ARHGDIB_uc001rcp.1_RNA	NM_001175	NP_001166	P52566	GDIR2_HUMAN	Rho GDP dissociation inhibitor (GDI) beta	172					actin cytoskeleton organization|cellular component movement|immune response|multicellular organismal development|negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytoskeleton|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity				0						TTGTTGTGGTACGTGCCTCGC	0.537			NA											15	98					0	0	0.00499	0	0
RERGL	79785	broad.mit.edu	37	12	18237467	18237467	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:18237467T>A	uc001rdq.2	-	5	513	c.319A>T	c.(319-321)ACT>TCT	p.T107S	RERGL_uc001rdr.2_Missense_Mutation_p.T106S	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	107	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						CAATGACTAGTTTGTGGCTCC	0.373			NA											25	39					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	12	31300813	31300813	+	Splice_Site	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:31300813A>T	uc010sjy.1	-	11	1445	c.1445_splice	c.e11+1	p.H482_splice						RecName: Full=Ovostatin homolog 1; Flags: Precursor;												NA						CCAGGAACCCACTGACTGAGA	0.448			NA											31	55					0	0	0.008361	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42853627	42853627	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:42853627T>C	uc010skv.1	-	8	2767	c.2480A>G	c.(2479-2481)AAT>AGT	p.N827S	PRICKLE1_uc001rnl.2_Missense_Mutation_p.N827S|PRICKLE1_uc010skw.1_Missense_Mutation_p.N827S|PRICKLE1_uc001rnm.2_Missense_Mutation_p.N827S|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	827					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		AATAATACAATTTTTGCCCTT	0.398			NA											42	62					0	0	0.002852	0	0
NELL2	4753	broad.mit.edu	37	12	44915846	44915846	+	Silent	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:44915846A>G	uc001rog.2	-	18	2707	c.2112T>C	c.(2110-2112)AAT>AAC	p.N704N	NELL2_uc001rof.3_Silent_p.N703N|NELL2_uc001roh.2_Silent_p.N704N|NELL2_uc009zkd.2_Silent_p.N656N|NELL2_uc010skz.1_Silent_p.N754N|NELL2_uc010sla.1_Silent_p.N727N	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	704	VWFC 4.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		AAGTTTCCCCATTTTGATGGA	0.453			NA											4	34					0	0	0.009096	0	0
SCN8A	6334	broad.mit.edu	37	12	52162673	52162673	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:52162673C>T	uc001ryw.2	+	17	3104	c.2926C>T	c.(2926-2928)CTC>TTC	p.L976F	SCN8A_uc010snl.1_Missense_Mutation_p.L841F	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	976	Helical; Name=S6 of repeat II; (Potential).|II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TCTGGCCTTGCTCCTGAGCTC	0.493			NA											6	36					0	0	0.001168	0	0
CTDSP2	10106	broad.mit.edu	37	12	58217755	58217755	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:58217755T>A	uc001sqm.2	-	7	1151	c.622A>T	c.(622-624)AGG>TGG	p.R208W	CTDSP2_uc010ssg.1_Missense_Mutation_p.R82W|CTDSP2_uc009zqf.2_Missense_Mutation_p.R56W|CTDSP2_uc009zqg.2_Intron	NM_005730	NP_005721	O14595	CTDS2_HUMAN	nuclear LIM interactor-interacting factor 2	208	FCP1 homology.				protein dephosphorylation	nucleus|soluble fraction	CTD phosphatase activity|metal ion binding			central_nervous_system(1)	1	all_neural(12;0.00559)|Glioma(12;0.0143)|Melanoma(17;0.122)					CTCAGGTCCCTCCCCAGGCGG	0.607			NA											5	37					0	0	0.000602	0	0
DPY19L2	283417	broad.mit.edu	37	12	63974554	63974554	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:63974554C>A	uc001srp.1	-	19	1969	c.1788G>T	c.(1786-1788)GTG>GTT	p.V596V	DPY19L2_uc010sso.1_Silent_p.V43V	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	596					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		GTATTGACATCACTGTTAAAA	0.353			NA											11	44					3.03607e-14	4.94522e-14	0.001368	1	0
MDM2	4193	broad.mit.edu	37	12	69233396	69233396	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:69233396G>C	uc001sui.2	+	11	1548	c.1261G>C	c.(1261-1263)GAA>CAA	p.E421Q	MDM2_uc009zri.2_Missense_Mutation_p.E376Q|MDM2_uc009zqx.2_Missense_Mutation_p.E366Q|MDM2_uc009zqw.2_Intron|MDM2_uc001suk.2_Intron|MDM2_uc001sun.3_Missense_Mutation_p.E240Q|MDM2_uc009zqz.2_Missense_Mutation_p.E368Q|MDM2_uc009zra.2_Missense_Mutation_p.E219Q|MDM2_uc001sum.1_Missense_Mutation_p.E49Q|MDM2_uc009zrd.2_Missense_Mutation_p.E105Q|MDM2_uc009zrc.2_Missense_Mutation_p.E105Q|MDM2_uc009zre.2_Missense_Mutation_p.E162Q|MDM2_uc009zrf.2_Missense_Mutation_p.E105Q|MDM2_uc001suo.2_Missense_Mutation_p.E215Q|MDM2_uc009zrg.2_Missense_Mutation_p.E137Q|MDM2_uc009zrh.2_Missense_Mutation_p.E189Q	NM_002392	NP_002383	Q00987	MDM2_HUMAN	mouse double minute 2 homolog isoform MDM2	415	Necessary for interaction with USP2.				cellular response to hypoxia|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|establishment of protein localization|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein complex assembly|protein destabilization|protein localization to nucleus|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to antibiotic|synaptic transmission	cytosol|endocytic vesicle membrane|insoluble fraction|nucleolus|nucleoplasm|plasma membrane|protein complex	enzyme binding|identical protein binding|p53 binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|central_nervous_system(1)	3	all_cancers(1;8.46e-121)|all_epithelial(5;3.21e-36)|Lung NSC(4;2.16e-33)|all_lung(4;3.03e-31)|Glioma(1;1.9e-09)|Breast(13;1.59e-06)|all_neural(1;1.03e-05)|Melanoma(1;0.0171)|Renal(347;0.0684)		all cancers(2;8.67e-65)|GBM - Glioblastoma multiforme(2;8.89e-62)|BRCA - Breast invasive adenocarcinoma(5;2.43e-08)|Lung(24;1.5e-05)|LUAD - Lung adenocarcinoma(15;8.5e-05)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			GAAAGAGTTTGAAAGGGAAGA	0.388			NA	A		sarcoma|glioma|colorectal|other								15	28					0	0	0.00245	0	0
BEST3	144453	broad.mit.edu	37	12	70072571	70072571	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:70072571G>T	uc001svg.2	-	5	811	c.584C>A	c.(583-585)GCC>GAC	p.A195D	BEST3_uc001svd.1_Missense_Mutation_p.A195D|BEST3_uc001sve.1_RNA|BEST3_uc001svf.2_Missense_Mutation_p.A33D|BEST3_uc010stm.1_Missense_Mutation_p.A89D|BEST3_uc001svh.2_Missense_Mutation_p.A33D	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	195	Helical; (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			TTCATTCCGGGCTTTAGTTGC	0.358			NA											4	33					0.00909568	0.00961102	0.009096	1	0
PLXNC1	10154	broad.mit.edu	37	12	94649046	94649046	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:94649046T>C	uc001tdc.2	+	17	3310	c.3061T>C	c.(3061-3063)TTT>CTT	p.F1021L	PLXNC1_uc010sut.1_Missense_Mutation_p.F68L	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1021	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						CTACAAACATTTTGCTCTGAG	0.403			NA											5	24					0	0	0.000602	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834873	125834873	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:125834873G>A	uc001uhe.1	+	2	936	c.928G>A	c.(928-930)GAC>AAC	p.D310N		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	310	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CTCTGTGGCAGACCAGTTCAC	0.483			NA											17	143					0	0	0.004007	0	0
P2RX2	22953	broad.mit.edu	37	12	133196156	133196156	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:133196156C>A	uc001ukj.1	+	2	305	c.305C>A	c.(304-306)CCC>CAC	p.P102H	P2RX2_uc001uki.1_Missense_Mutation_p.P102H|P2RX2_uc001ukk.1_Missense_Mutation_p.P102H|P2RX2_uc001ukl.1_Missense_Mutation_p.P102H|P2RX2_uc001ukm.1_Silent_p.P79P|P2RX2_uc001ukn.1_Intron|P2RX2_uc009zyt.1_Missense_Mutation_p.P102H|P2RX2_uc001uko.1_Missense_Mutation_p.P102H	NM_170682	NP_733782	Q9UBL9	P2RX2_HUMAN	purinergic receptor P2X2 isoform A	102	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|protein homooligomerization	integral to membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0767)		OV - Ovarian serous cystadenocarcinoma(86;2.32e-08)|Epithelial(86;8.62e-08)|all cancers(50;4.5e-06)		GTGAAGCCCCCCGAGGTgcgg	0.567			NA											9	48					0.00448238	0.00480439	0.004482	1	0
NALCN	259232	broad.mit.edu	37	13	101726011	101726011	+	Silent	SNP	C	C	A	rs139869457		TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr13:101726011C>A	uc001vox.1	-	37	4311	c.4122G>T	c.(4120-4122)TCG>TCT	p.S1374S		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1374	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CTTTTCCAGCCGAAGAAAAAT	0.353			NA											6	28					0.00198382	0.00215106	0.001984	1	0
CUL4A	8451	broad.mit.edu	37	13	113897418	113897418	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr13:113897418A>G	uc010tjy.1	+	12	1183	c.1172A>G	c.(1171-1173)AAG>AGG	p.K391R	CUL4A_uc010tjx.1_Missense_Mutation_p.K291R|CUL4A_uc010agu.2_Missense_Mutation_p.K252R|CUL4A_uc010tjz.1_Missense_Mutation_p.K70R	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	391					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			AACCTGATGAAGGAGTCCTTT	0.443			NA											23	43					0	0	0.003954	0	0
POTEG	404785	broad.mit.edu	37	14	19553564	19553564	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr14:19553564G>C	uc001vuz.1	+	1	200	c.148G>C	c.(148-150)GAC>CAC	p.D50H	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	50										ovary(1)	1						TGGAGACCACGACGATTCTGC	0.607			NA											26	392					0	0	0.002836	0	0
LRFN5	145581	broad.mit.edu	37	14	42356189	42356189	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr14:42356189G>A	uc001wvm.2	+	3	1559	c.361G>A	c.(361-363)GGT>AGT	p.G121S	LRFN5_uc010ana.2_Missense_Mutation_p.G121S	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	121	Extracellular (Potential).|LRR 3.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TATGTTCAGTGGTCTTTCCAA	0.378			NA								HNSCC(30;0.082)			14	73					0	0	0.001855	0	0
DAAM1	23002	broad.mit.edu	37	14	59789744	59789744	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr14:59789744C>G	uc001xdz.1	+	6	700	c.575C>G	c.(574-576)TCT>TGT	p.S192C	DAAM1_uc001xea.1_Missense_Mutation_p.S192C|DAAM1_uc001xeb.1_Missense_Mutation_p.S192C	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	192	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		ATGAACAACTCTCAAGGCCGG	0.448			NA											14	56					0	0	0.001855	0	0
RTN1	6252	broad.mit.edu	37	14	60212835	60212835	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr14:60212835G>T	uc001xen.1	-	2	815	c.606C>A	c.(604-606)CCC>CCA	p.P202P		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	202					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		TCACCTCCTCGGGTCTGGTTA	0.453			NA											20	170					9.7654e-05	0.000113121	0.007413	1	0
STON2	85439	broad.mit.edu	37	14	81743256	81743256	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr14:81743256T>A	uc010tvu.1	-	4	2600	c.2399A>T	c.(2398-2400)GAC>GTC	p.D800V	STON2_uc001xvk.1_Missense_Mutation_p.D800V|STON2_uc010tvt.1_Missense_Mutation_p.D597V	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	800	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		TGAGTTTTTGTCCGGCAGTCG	0.463			NA											47	85					0	0	0.00361	0	0
TTC7B	145567	broad.mit.edu	37	14	91007859	91007859	+	Silent	SNP	C	C	A	rs142524402	byFrequency	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr14:91007859C>A	uc001xyp.2	-	20	2507	c.2385G>T	c.(2383-2385)TCG>TCT	p.S795S	TTC7B_uc001xyo.2_Silent_p.S239S|TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	795	TPR 10.						binding			ovary(2)	2		Melanoma(154;0.222)				CGTGGGCTGTCGAGTTCACCT	0.637			NA											13	22					9.31168e-06	1.15391e-05	0.001855	1	0
ARHGAP11A	9824	broad.mit.edu	37	15	32928865	32928865	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr15:32928865G>T	uc001zgy.1	+	12	2613	c.1891G>T	c.(1891-1893)GAA>TAA	p.E631*	ARHGAP11A_uc010ubw.1_Nonsense_Mutation_p.E442*|ARHGAP11A_uc010ubx.1_Nonsense_Mutation_p.E442*	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	631					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		AAAATTAACTGAACCATCTTA	0.343	Colon(45;757 1134 30003 36652)		NA											15	23					1.05317e-09	1.488e-09	0.00245	1	0
ACTC1	70	broad.mit.edu	37	15	35084623	35084623	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr15:35084623G>T	uc001ziu.1	-	4	845	c.602C>A	c.(601-603)TCC>TAC	p.S201Y	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	201					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		GGTGACAAAGGAGTAGCCACG	0.537			NA											14	58					1.49906e-05	1.80954e-05	0.00245	1	0
HERC1	8925	broad.mit.edu	37	15	63991040	63991040	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr15:63991040A>C	uc002amp.2	-	26	4940	c.4792T>G	c.(4792-4794)TTT>GTT	p.F1598V	HERC1_uc010uil.1_Missense_Mutation_p.F582V	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1598					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CCACTCACAAAGCTTACAACA	0.443			NA											14	30					0	0	0.001855	0	0
ACSBG1	23205	broad.mit.edu	37	15	78474319	78474319	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr15:78474319C>A	uc002bdh.2	-	8	1119	c.1063G>T	c.(1063-1065)GCC>TCC	p.A355S	ACSBG1_uc010umw.1_Missense_Mutation_p.A351S|ACSBG1_uc010umx.1_Missense_Mutation_p.A113S|ACSBG1_uc010umy.1_Missense_Mutation_p.A248S	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	355					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						ACCTTCAGGGCGTCGGGTTCG	0.612			NA											8	38					0.00448238	0.00480439	0.004482	1	0
SLC28A1	9154	broad.mit.edu	37	15	85488008	85488008	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr15:85488008G>A	uc002blg.2	+	18	1986	c.1784G>A	c.(1783-1785)GGG>GAG	p.G595E	SLC28A1_uc010bnb.2_Missense_Mutation_p.G595E|SLC28A1_uc010upe.1_Missense_Mutation_p.G429E|SLC28A1_uc010upf.1_Missense_Mutation_p.G595E|SLC28A1_uc010upg.1_Intron	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	595					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ATGCCCAGGGGGGCTGAAGTT	0.602			NA											18	71					0	0	0.00278	0	0
LRRK1	79705	broad.mit.edu	37	15	101550913	101550913	+	Silent	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr15:101550913A>G	uc002bwr.2	+	9	1471	c.1152A>G	c.(1150-1152)GAA>GAG	p.E384E	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	384	LRR 5.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGCTACAGGAACTTGATATAT	0.378			NA											4	41					0	0	0.009096	0	0
PKD1	5310	broad.mit.edu	37	16	2164249	2164249	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr16:2164249C>A	uc002cos.1	-	11	2984	c.2775G>T	c.(2773-2775)CGG>CGT	p.R925R	PKD1_uc002cot.1_Silent_p.R925R	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	925	Extracellular (Potential).|PKD 3.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CCGCCGTCACCCGCAGGCTGA	0.682			NA											5	45					1.23904e-05	1.51528e-05	0.000602	1	0
ABCA3	21	broad.mit.edu	37	16	2328346	2328346	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr16:2328346C>A	uc002cpy.1	-	30	5373	c.4661G>T	c.(4660-4662)TGG>TTG	p.W1554L	ABCA3_uc010bsk.1_Missense_Mutation_p.W1496L	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1554	ABC transporter 2.				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CACGGTGTCCCAAAGCAGGCG	0.642			NA											28	95					3.65163e-15	6.13539e-15	0.00632	1	0
AMDHD2	51005	broad.mit.edu	37	16	2578487	2578487	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr16:2578487G>T	uc002cqq.2	+	8	994	c.897G>T	c.(895-897)TTG>TTT	p.L299F	AMDHD2_uc002cqp.2_Missense_Mutation_p.L299F|AMDHD2_uc010uwc.1_Missense_Mutation_p.L299F|AMDHD2_uc010uwd.1_Missense_Mutation_p.L63F	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	299					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						TCCCTGCCTTGGGCCTGGGCA	0.667			NA											6	43					0.00116845	0.00127809	0.001168	1	0
MYH11	4629	broad.mit.edu	37	16	15808797	15808797	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr16:15808797G>C	uc002ddy.2	-	40	5862	c.5755C>G	c.(5755-5757)CGC>GGC	p.R1919G	MYH11_uc002ddv.2_Missense_Mutation_p.R1926G|MYH11_uc002ddw.2_Missense_Mutation_p.R1919G|MYH11_uc002ddx.2_Missense_Mutation_p.R1926G|MYH11_uc010bvg.2_Missense_Mutation_p.R1751G|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron|MYH11_uc010bvh.2_Missense_Mutation_p.R625G	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1919	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TTCACCTCGCGGCCCATGGCC	0.672			NA	T	CBFB	AML								101	101					0	0	0.00361	0	0
ITPRIPL2	162073	broad.mit.edu	37	16	19126972	19126972	+	Nonsense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr16:19126972C>T	uc002dfu.3	+	1	1719	c.1189C>T	c.(1189-1191)CAG>TAG	p.Q397*	ITPRIPL2_uc002dft.2_Nonsense_Mutation_p.Q93*	NM_001034841	NP_001030013	Q3MIP1	IPIL2_HUMAN	inositol 1,4,5-triphosphate receptor interacting	397	Cytoplasmic (Potential).					integral to membrane				skin(2)	2						GGCCGCCACCCAGTGGGGACG	0.657			NA											56	208					0	0	0.00361	0	0
ABCC12	94160	broad.mit.edu	37	16	48142350	48142350	+	Splice_Site	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr16:48142350C>T	uc002efc.1	-	17	2717	c.2371_splice	c.e17+1	p.G791_splice	ABCC12_uc002eey.1_Splice_Site|ABCC12_uc002eez.1_Splice_Site|ABCC12_uc002efa.1_Splice_Site|ABCC12_uc002efb.1_Splice_Site|ABCC12_uc002efd.1_Splice_Site	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12							integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TTATACTGAACCTCCAGAAGC	0.388			NA											13	35					0	0	0.001368	0	0
WSCD1	23302	broad.mit.edu	37	17	6012984	6012984	+	Missense_Mutation	SNP	C	C	G	rs146993898	byFrequency	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:6012984C>G	uc010cli.2	+	6	1286	c.907C>G	c.(907-909)CGG>GGG	p.R303G	WSCD1_uc002gcn.2_Missense_Mutation_p.R303G|WSCD1_uc002gco.2_Missense_Mutation_p.R303G|WSCD1_uc010clj.2_5'UTR	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	303	WSC 2.					integral to membrane	sulfotransferase activity				0						CCCTACCCCCCGGTTCAACCT	0.562			NA											37	191					0	0	0.004878	0	0
DNAH2	146754	broad.mit.edu	37	17	7721353	7721353	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:7721353C>T	uc002giu.1	+	67	10340	c.10326C>T	c.(10324-10326)AAC>AAT	p.N3442N	DNAH2_uc010cnm.1_Silent_p.N380N	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3442	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TACTTCAGAACGTGCAGGAAT	0.522			NA											15	113					0	0	0.003163	0	0
CCL7	6354	broad.mit.edu	37	17	32598209	32598209	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:32598209A>C	uc002hhz.2	+	2	191	c.121A>C	c.(121-123)AAG>CAG	p.K41Q	CCL7_uc010ctf.2_Intron	NM_006273	NP_006264	P80098	CCL7_HUMAN	chemokine (C-C motif) ligand 7 precursor	41					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding			ovary(1)	1	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		ATTTATCAATAAGAAAATCCC	0.473			NA											32	50					0	0	0.008361	0	0
THRA	7067	broad.mit.edu	37	17	38240933	38240933	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:38240933G>T	uc002htw.2	+	6	924	c.441G>T	c.(439-441)AAG>AAT	p.K147N	THRA_uc010cwp.1_Missense_Mutation_p.K147N|THRA_uc002htv.2_Missense_Mutation_p.K147N|THRA_uc002htx.2_Missense_Mutation_p.K147N	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	147					negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	GGCGGCGGAAGGAGGAGATGA	0.587			NA											79	95					4.81439e-37	8.84615e-37	0.00361	1	0
KRT28	162605	broad.mit.edu	37	17	38948771	38948771	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:38948771G>A	uc002hvh.1	-	8	1369	c.1303C>T	c.(1303-1305)CGT>TGT	p.R435C		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	435	Tail.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				ACTTTACCACGTTGATCTAGC	0.358	Melanoma(19;789 869 15380 26882 39836)		NA											6	15					0	0	0.001168	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274415	39274415	+	Silent	SNP	C	C	T	rs425487	by1000genomes	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:39274415C>T	uc002hvz.2	-	1	192	c.153G>A	c.(151-153)AGG>AGA	p.R51R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	51	6.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGCCTGCAGCAGC	0.667			NA											4	86					0	0	0.009096	0	0
WNT9B	7484	broad.mit.edu	37	17	44952705	44952705	+	Silent	SNP	C	C	T	rs142428656	byFrequency	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:44952705C>T	uc002ikw.1	+	3	610	c.573C>T	c.(571-573)GAC>GAT	p.D191D	WNT9B_uc002ikx.1_Silent_p.D191D	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	191					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			CACGGGCAGACGCCCACAATA	0.607			NA											5	23					0	0	0.000602	0	0
BZRAP1	9256	broad.mit.edu	37	17	56395678	56395678	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:56395678G>A	uc002ivx.3	-	14	2706	c.1835C>T	c.(1834-1836)TCC>TTC	p.S612F	BZRAP1_uc010dcs.2_Missense_Mutation_p.S552F|BZRAP1_uc010wnt.1_Missense_Mutation_p.S612F	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	612						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GTTGTGGATGGACTCGGAGTG	0.607			NA											10	55					0	0	0.008291	0	0
DNAH17	8632	broad.mit.edu	37	17	76547656	76547656	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:76547656C>T	uc002jvv.1	-	12	1564	c.1458G>A	c.(1456-1458)AAG>AAA	p.K486K						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TTTGTTTTGCCTTTTGCATCC	0.463			NA											21	65					0	0	0.002299	0	0
DNAH17	8632	broad.mit.edu	37	17	76547658	76547658	+	Nonsense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:76547658T>A	uc002jvv.1	-	12	1562	c.1456A>T	c.(1456-1458)AAG>TAG	p.K486*						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TGTTTTGCCTTTTGCATCCTG	0.468			NA											22	66					0	0	0.00278	0	0
RNF213	57674	broad.mit.edu	37	17	78320969	78320969	+	Missense_Mutation	SNP	G	G	A	rs76918558		TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:78320969G>A	uc002jyh.1	+	4	3276	c.3053G>A	c.(3052-3054)CGC>CAC	p.R1018H		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GTGTGTAAGCGCCAGGACAAG	0.532			NA											5	20					0	0	0.000602	0	0
TMEM105	284186	broad.mit.edu	37	17	79287590	79287590	+	Missense_Mutation	SNP	T	T	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr17:79287590T>G	uc002kad.1	-	3	801	c.251A>C	c.(250-252)CAT>CCT	p.H84P		NM_178520	NP_848615	Q8N8V8	TM105_HUMAN	transmembrane protein 105	84						integral to membrane				ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.0892)			AGGCCCTTCATGTCTTCGCCT	0.652			NA											18	114					0	0	0.006122	0	0
CEP192	55125	broad.mit.edu	37	18	13087146	13087146	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr18:13087146G>T	uc010xac.1	+	31	5827	c.5747G>T	c.(5746-5748)CGC>CTC	p.R1916L	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.R1441L|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.R338L|CEP192_uc002krw.2_Missense_Mutation_p.R65L|CEP192_uc002krx.2_5'UTR|CEP192_uc002kry.2_5'Flank	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1916										ovary(4)|pancreas(1)	5						TTTTCTGTCCGCAACACTGGC	0.363			NA											15	52					1.02788e-11	1.5843e-11	0.00499	1	0
C18orf8	29919	broad.mit.edu	37	18	21109655	21109655	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr18:21109655C>T	uc010xax.1	+	17	1594	c.1473C>T	c.(1471-1473)AAC>AAT	p.N491N	C18orf8_uc002kul.2_RNA|C18orf8_uc010xay.1_Silent_p.N115N|NPC1_uc010dlu.1_RNA	NM_013326	NP_037458	Q96DM3	MIC1_HUMAN	colon cancer-associated protein Mic1	491	Mic1.									ovary(1)	1	all_cancers(21;0.000122)|all_epithelial(16;8.08e-07)|Lung NSC(20;0.00206)|all_lung(20;0.00659)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GTTCTCTTAACCAGTTTCAGA	0.388			NA											15	101					0	0	0.003163	0	0
ASXL3	80816	broad.mit.edu	37	18	31325198	31325198	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr18:31325198G>T	uc010dmg.1	+	12	5441	c.5386G>T	c.(5386-5388)GTT>TTT	p.V1796F	ASXL3_uc002kxq.2_Missense_Mutation_p.V1503F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1796					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGAGAGAAACGTTGAAATTCC	0.498			NA											62	100					1.88225e-35	3.44157e-35	0.00361	1	0
CD226	10666	broad.mit.edu	37	18	67613982	67613982	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr18:67613982C>A	uc010dqo.2	-	2	817	c.370G>T	c.(370-372)GTG>TTG	p.V124L	CD226_uc002lkm.3_Missense_Mutation_p.V124L	NM_006566	NP_006557	Q15762	CD226_HUMAN	CD226 molecule precursor	124	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell recognition|positive regulation of Fc receptor mediated stimulatory signaling pathway|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	cell surface|integral to plasma membrane|membrane raft	cell adhesion molecule binding|integrin binding|protein kinase binding|receptor activity				0		Esophageal squamous(42;0.129)				GACTGAACCACCTGTATCACC	0.383	NSCLC(184;838 2130 8673 21498 50749)		NA											9	38					0.000673444	0.00075208	0.008291	1	0
SHC2	25759	broad.mit.edu	37	19	422268	422268	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:422268T>C	uc002loq.3	-	11	1498	c.1498A>G	c.(1498-1500)ATG>GTG	p.M500V	SHC2_uc002lop.3_Missense_Mutation_p.M241V	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	500	SH2.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCGAAGCATCCTCTCTGCC	0.701			NA											4	20					0	0	0.009096	0	0
EEF2	1938	broad.mit.edu	37	19	3979429	3979429	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:3979429G>A	uc002lze.2	-	11	1694	c.1611C>T	c.(1609-1611)ATC>ATT	p.I537I		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	537						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTCCTCGATGATGCACTGAA	0.637	Colon(165;1804 1908 4071 6587 18799)		NA											33	78					0	0	0.003271	0	0
TMEM146	257062	broad.mit.edu	37	19	5776215	5776216	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:5776215_5776216GG>TT	uc002mda.2	+	21	2046_2047	c.1985_1986GG>TT	c.(1984-1986)AGG>ATT	p.R662I		NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	662	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCCCCTTTGAGGTGGCCAGACG	0.564			NA											20	58					0	0	0.004672	0	0
EMR1	2015	broad.mit.edu	37	19	6919615	6919615	+	Missense_Mutation	SNP	C	C	T	rs144318055		TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:6919615C>T	uc002mfw.2	+	13	1515	c.1477C>T	c.(1477-1479)CGC>TGC	p.R493C	EMR1_uc010dvc.2_Missense_Mutation_p.R493C|EMR1_uc010dvb.2_Missense_Mutation_p.R441C|EMR1_uc010xji.1_Missense_Mutation_p.R352C|EMR1_uc010xjj.1_Missense_Mutation_p.R316C	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	493	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TTTAAATGAGCGCTTCTTCAA	0.473			NA											25	85					0	0	0.005443	0	0
MUC16	94025	broad.mit.edu	37	19	9047883	9047883	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:9047883C>A	uc002mkp.2	-	5	33952	c.33748G>T	c.(33748-33750)GTT>TTT	p.V11250F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11252	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAAGTTGGAACAACAGAACTT	0.483			NA											6	31					0.00116845	0.00127809	0.001168	1	0
MUC16	94025	broad.mit.edu	37	19	9059529	9059529	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:9059529C>A	uc002mkp.2	-	3	28121	c.27917G>T	c.(27916-27918)AGC>ATC	p.S9306I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9308	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGGACAGTGCTTTTTTCTGT	0.507			NA											10	139					2.80697e-09	3.92135e-09	0.000978	1	0
MUC16	94025	broad.mit.edu	37	19	9086780	9086780	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:9086780C>T	uc002mkp.2	-	1	5239	c.5035G>A	c.(5035-5037)GGG>AGG	p.G1679R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1679	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCATTGTCCCAGCCATAGAG	0.498			NA											4	117					0	0	0.009096	0	0
ZNF560	147741	broad.mit.edu	37	19	9578633	9578633	+	Silent	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:9578633A>T	uc002mlp.1	-	10	1200	c.990T>A	c.(988-990)ACT>ACA	p.T330T	ZNF560_uc010dwr.1_Silent_p.T224T	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	330					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TTGTGGAGTGAGTAAATGCTT	0.388			NA											16	49					0	0	0.004007	0	0
COL5A3	50509	broad.mit.edu	37	19	10114363	10114363	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:10114363G>A	uc002mmq.1	-	6	813	c.727C>T	c.(727-729)CGT>TGT	p.R243C		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	243	Nonhelical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CGCCGAGGACGAGGGGTTTCT	0.582			NA											14	60					0	0	0.003163	0	0
ZNF799	90576	broad.mit.edu	37	19	12501395	12501395	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:12501395T>A	uc010dyt.2	-	4	1967	c.1817A>T	c.(1816-1818)CAT>CTT	p.H606L	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	606	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						AGTCTTTTTATGTCTATGCAA	0.408			NA											17	82					0	0	0.001882	0	0
ZNF714	148206	broad.mit.edu	37	19	21300752	21300752	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:21300752G>C	uc002npo.3	+	6	1645	c.1285G>C	c.(1285-1287)GAA>CAA	p.E429Q	ZNF714_uc002npl.2_Missense_Mutation_p.E274Q|ZNF714_uc010ecp.1_Missense_Mutation_p.E380Q|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	429	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAAATGTGAAGAATGTGGCAA	0.368			NA											12	22					0	0	0.001368	0	0
LSM14A	26065	broad.mit.edu	37	19	34712605	34712605	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:34712605G>C	uc002nvb.3	+	9	1526	c.1330G>C	c.(1330-1332)GGT>CGT	p.G444R	LSM14A_uc002nva.3_Missense_Mutation_p.G444R|LSM14A_uc010xru.1_Missense_Mutation_p.G403R|LSM14A_uc002nvc.3_Missense_Mutation_p.G250R	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	444					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					ATTCAGAGGAGGTCGTGGGGG	0.507			NA											9	27					0	0	0.008291	0	0
HKR1	284459	broad.mit.edu	37	19	37854341	37854341	+	Silent	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:37854341A>G	uc002ogb.2	+	6	1913	c.1644A>G	c.(1642-1644)TCA>TCG	p.S548S	HKR1_uc002ofx.2_Silent_p.S264S|HKR1_uc002ofy.2_Silent_p.S264S|HKR1_uc002oga.2_Silent_p.S530S|HKR1_uc010xto.1_Silent_p.S530S|HKR1_uc002ogc.2_Silent_p.S529S|HKR1_uc010xtp.1_Silent_p.S487S|HKR1_uc002ogd.2_Silent_p.S487S	NM_181786	NP_861451	P10072	HKR1_HUMAN	GLI-Kruppel family member HKR1	548					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GGACACATTCAGGGGAAAAGC	0.507			NA											3	57					0	0	0.004672	0	0
MAP3K10	4294	broad.mit.edu	37	19	40711891	40711891	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:40711891G>T	uc002ona.2	+	5	1550	c.1262G>T	c.(1261-1263)CGG>CTG	p.R421L	MAP3K10_uc002onb.2_Intron	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	421	Leucine-zipper 2.				activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						CAGCTGCGGCGGCGGGAGCAG	0.687			NA											3	20					6.4e-05	7.48504e-05	0.004672	1	0
AXL	558	broad.mit.edu	37	19	41727831	41727831	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:41727831C>T	uc010ehj.2	+	4	646	c.456C>T	c.(454-456)GCC>GCT	p.A152A	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.A152A|AXL_uc010ehk.2_Silent_p.A152A	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	152	Ig-like C2-type 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CTGTGGCCGCCAACACCCCCT	0.662			NA											4	27					0	0	0.000602	0	0
ACPT	93650	broad.mit.edu	37	19	51297178	51297178	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:51297178C>G	uc002pta.1	+	8	812	c.812C>G	c.(811-813)TCC>TGC	p.S271C		NM_033068	NP_149059	Q9BZG2	PPAT_HUMAN	testicular acid phosphatase precursor	271	Extracellular (Potential).					integral to membrane	acid phosphatase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		GCAAACTTCTCCCGGGTCCAG	0.587			NA											26	111					0	0	0.00632	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51914473	51914473	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:51914473G>T	uc002pwo.2	-	11	2590	c.1974C>A	c.(1972-1974)TCC>TCA	p.S658S	SIGLEC10_uc002pwp.2_Silent_p.S600S|SIGLEC10_uc002pwq.2_Silent_p.S505S|SIGLEC10_uc002pwr.2_Silent_p.S563S|SIGLEC10_uc010ycy.1_Silent_p.S473S|SIGLEC10_uc010ycz.1_Silent_p.S515S|SIGLEC10_uc010eow.2_Silent_p.S375S	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	658	Cytoplasmic (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GGCTCTCCTGGGATTCTGGGG	0.567			NA											46	119					1.32667e-27	2.41389e-27	0.00361	1	0
ZNF350	59348	broad.mit.edu	37	19	52472344	52472344	+	Nonsense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:52472344C>T	uc002pyd.2	-	3	284	c.56G>A	c.(55-57)TGG>TAG	p.W19*	uc002pyb.2_Intron|uc002pyc.2_Intron	NM_021632	NP_067645	Q9GZX5	ZN350_HUMAN	zinc finger protein 350	19	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			breast(1)	1		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0179)		CCACTCCTCCCAAGTGAAGTC	0.493			NA											33	95					0	0	0.002445	0	0
ZNF578	147660	broad.mit.edu	37	19	53013918	53013918	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:53013918G>T	uc002pzp.3	+	6	528	c.284G>T	c.(283-285)AGT>ATT	p.S95I		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		AGACATGAAAGTTATCACACT	0.393			NA											30	111					9.80776e-20	1.70948e-19	0.00632	1	0
NLRP9	338321	broad.mit.edu	37	19	56249718	56249718	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:56249718T>A	uc002qly.2	-	1	51	c.23A>T	c.(22-24)GAT>GTT	p.D8V		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	8	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CAAGCCAAAATCCGAAAAAAA	0.398			NA											22	86					0	0	0.010504	0	0
PEG3	5178	broad.mit.edu	37	19	57326402	57326402	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:57326402G>C	uc002qnu.2	-	7	3759	c.3408C>G	c.(3406-3408)GAC>GAG	p.D1136E	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.D1107E|PEG3_uc002qnv.2_Missense_Mutation_p.D1136E|PEG3_uc002qnw.2_Missense_Mutation_p.D1012E|PEG3_uc002qnx.2_Missense_Mutation_p.D1010E|PEG3_uc010etr.2_Missense_Mutation_p.D1136E	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1136					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ACTCCCGACTGTCAACCAGGC	0.483			NA											51	118					0	0	0.00361	0	0
ZNF304	57343	broad.mit.edu	37	19	57867973	57867973	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:57867973G>C	uc010ygw.1	+	3	1124	c.736G>C	c.(736-738)GCT>CCT	p.A246P	ZNF304_uc010etw.2_Missense_Mutation_p.A293P|ZNF304_uc010etx.2_Missense_Mutation_p.A204P	NM_020657	NP_065708	Q9HCX3	ZN304_HUMAN	zinc finger protein 304	246					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		GATGACTCATGCTGAGGTGAG	0.443			NA											14	46					0	0	0.00245	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565031	58565031	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:58565031C>T	uc002qrc.1	+	6	1086	c.839C>T	c.(838-840)TCG>TTG	p.S280L		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	280					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GCAGGCATCTCGGTAGTGCCG	0.627			NA											9	45					0	0	0.006214	0	0
OTOF	9381	broad.mit.edu	37	2	26691279	26691279	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:26691279C>A	uc002rhk.2	-	33	4214	c.4087G>T	c.(4087-4089)GAG>TAG	p.E1363*	OTOF_uc010yla.1_Nonsense_Mutation_p.E93*|OTOF_uc002rhh.2_Nonsense_Mutation_p.E596*|OTOF_uc002rhi.2_Nonsense_Mutation_p.E673*|OTOF_uc002rhj.2_Nonsense_Mutation_p.E596*	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1363	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCTCACCCTCGGTATTGTCC	0.562	GBM(102;732 1451 20652 24062 31372)		NA											7	58					1.06961e-07	1.40977e-07	0.00308	1	0
GALNT14	79623	broad.mit.edu	37	2	31147628	31147628	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:31147628C>A	uc002rnr.2	-	12	1832	c.1213G>T	c.(1213-1215)GAG>TAG	p.E405*	GALNT14_uc002rnq.2_Nonsense_Mutation_p.E385*|GALNT14_uc002rns.2_Nonsense_Mutation_p.E410*|GALNT14_uc010ymr.1_Nonsense_Mutation_p.E370*|GALNT14_uc010ezo.1_Nonsense_Mutation_p.E372*	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	405	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TAGATATTCTCCAGGTACCAC	0.532			NA											8	30					0.000442599	0.00049876	0.006214	1	0
LOC388955	388955	broad.mit.edu	37	2	63849930	63849930	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:63849930C>A	uc002sck.1	-	1	230	c.36G>T	c.(34-36)CGG>CGT	p.R12R		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						CCCAGGAACTCCGGAGCACGC	0.617			NA											6	28					0.00307968	0.00332962	0.00308	1	0
APLF	200558	broad.mit.edu	37	2	68804988	68804988	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:68804988G>T	uc002sep.2	+	10	1543	c.1370G>T	c.(1369-1371)GGG>GTG	p.G457V	APLF_uc002seq.1_RNA|APLF_uc002ser.1_Missense_Mutation_p.G188V	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	457					double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						GATAATGTTGGGCAACCCAAT	0.413			NA											10	47					0.00621372	0.00664102	0.006214	1	0
CYP26B1	56603	broad.mit.edu	37	2	72360249	72360249	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:72360249C>T	uc002sih.1	-	5	1049	c.1049G>A	c.(1048-1050)GGG>GAG	p.G350E	CYP26B1_uc010yra.1_Missense_Mutation_p.G333E|CYP26B1_uc010yrb.1_Missense_Mutation_p.G275E	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	350					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						GTAGCGCAGCCCACTGAGCGT	0.642			NA											12	46					0	0	0.000978	0	0
LRRTM4	80059	broad.mit.edu	37	2	77745966	77745966	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:77745966C>A	uc002snr.2	-	3	1444	c.1029G>T	c.(1027-1029)AAG>AAT	p.K343N	LRRTM4_uc002snq.2_Missense_Mutation_p.K343N|LRRTM4_uc002sns.2_Missense_Mutation_p.K343N|LRRTM4_uc002snt.2_Missense_Mutation_p.K344N	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	343	LRRCT.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		CCTGGATGTGCTTAGGTCCCG	0.418			NA											6	13					0.00116845	0.00127809	0.001168	1	0
SEMA4C	54910	broad.mit.edu	37	2	97526877	97526878	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:97526877_97526878CC>AA	uc002sxh.3	-	15	2147_2148	c.1987_1988GG>TT	c.(1987-1989)GGG>TTG	p.G663L	SEMA4C_uc002sxf.3_Missense_Mutation_p.G163L|SEMA4C_uc002sxe.2_Missense_Mutation_p.G204L|SEMA4C_uc002sxg.3_Missense_Mutation_p.G716L	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	663	Extracellular (Potential).				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						CCACACCAGCCCCAGGTTTTCC	0.698			NA											12	28					0	0	0.004672	0	0
PCDP1	200373	broad.mit.edu	37	2	120383254	120383254	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:120383254G>T	uc002tmb.2	+	16	1740	c.648G>T	c.(646-648)TCG>TCT	p.S216S	PCDP1_uc010yyq.1_Silent_p.S346S	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	502						cilium	calmodulin binding				0	Colorectal(110;0.196)					CAAAACAATCGATAGCACAAG	0.428			NA											5	17					1.23904e-05	1.51528e-05	0.000602	1	0
AMMECR1L	83607	broad.mit.edu	37	2	128631402	128631402	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:128631402T>C	uc002tpl.2	-	3	658	c.407A>G	c.(406-408)TAT>TGT	p.Y136C	AMMECR1L_uc002tpm.2_Missense_Mutation_p.Y136C	NM_031445	NP_113633	Q6DCA0	AMERL_HUMAN	AMME chromosomal region gene 1-like	136	AMMECR1.									central_nervous_system(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.07)		ATTTACTCACTAGGGGTCATT	0.498			NA											57	124					0	0	0.00361	0	0
NEB	4703	broad.mit.edu	37	2	152536299	152536299	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:152536299T>C	uc010fnx.2	-	32	3382	c.3191A>G	c.(3190-3192)TAT>TGT	p.Y1064C		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1064	Nebulin 26.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCTCAGGTCATATCCCTTCTT	0.448			NA											3	75					0	0	0.004672	0	0
ACVR1C	130399	broad.mit.edu	37	2	158390505	158390505	+	Silent	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:158390505T>A	uc002tzk.3	-	9	1650	c.1407A>T	c.(1405-1407)GGA>GGT	p.G469G	ACVR1C_uc002tzl.3_Silent_p.G389G|ACVR1C_uc010fof.2_Silent_p.G312G|ACVR1C_uc010foe.2_Silent_p.G419G	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	469	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						GGCGGGCCGCTCCGTTGGCAT	0.383			NA											17	47					0	0	0.010504	0	0
ATF2	1386	broad.mit.edu	37	2	175983089	175983089	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:175983089G>A	uc002ujl.2	-	6	470	c.208C>T	c.(208-210)CCA>TCA	p.P70S	ATF2_uc010fqv.2_Missense_Mutation_p.P21S|ATF2_uc002ujv.2_5'UTR|ATF2_uc002ujm.2_Missense_Mutation_p.P12S|ATF2_uc002ujn.2_RNA|ATF2_uc002ujo.2_Intron|ATF2_uc002ujp.2_RNA|ATF2_uc002ujq.2_Missense_Mutation_p.P70S|ATF2_uc002ujr.2_RNA|ATF2_uc010fqu.2_Missense_Mutation_p.P52S|ATF2_uc002ujs.2_Missense_Mutation_p.P12S|ATF2_uc002ujt.2_RNA|ATF2_uc002uju.2_RNA|ATF2_uc002ujw.1_Missense_Mutation_p.P12S|ATF2_uc002ujx.1_RNA|ATF2_uc002ujy.1_Missense_Mutation_p.P70S	NM_001880	NP_001871	P15336	ATF2_HUMAN	activating transcription factor 2	70					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	protein dimerization activity|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(1)|breast(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.125)			GTTGGTGTTGGGGTCTGATCT	0.333	Pancreas(17;87 705 4534 15538 30988)		NA											6	19					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179638339	179638339	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:179638339C>A	uc010zfg.1	-	32	7668	c.7444G>T	c.(7444-7446)GAT>TAT	p.D2482Y	TTN_uc010zfh.1_Missense_Mutation_p.D2436Y|TTN_uc010zfi.1_Missense_Mutation_p.D2436Y|TTN_uc010zfj.1_Missense_Mutation_p.D2436Y|TTN_uc002unb.2_Missense_Mutation_p.D2482Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2482							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTGTTCATCATTTAAGTAC	0.423			NA											3	50					0.000602214	0.000674552	0.000602	1	0
SATB2	23314	broad.mit.edu	37	2	200137283	200137283	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:200137283C>A	uc002uuy.1	-	11	2670	c.1853G>T	c.(1852-1854)CGC>CTC	p.R618L	SATB2_uc010fsq.1_Missense_Mutation_p.R500L|SATB2_uc002uuz.1_Missense_Mutation_p.R618L|SATB2_uc002uva.1_Missense_Mutation_p.R618L	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	618	Homeobox.					cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GATCTTTGTGCGAGACCGGGG	0.562	Colon(30;262 767 11040 24421 36230)		NA											27	87					4.22769e-11	6.35859e-11	0.00632	1	0
KIF1A	547	broad.mit.edu	37	2	241683359	241683359	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr2:241683359C>A	uc002vzy.2	-	31	3427	c.3281G>T	c.(3280-3282)AGC>ATC	p.S1094I	KIF1A_uc010fzk.2_Missense_Mutation_p.S1195I|KIF1A_uc002vzz.1_Missense_Mutation_p.S1195I	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1094					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GGGCGCTAACCTGAGCACGTC	0.592			NA											30	88					1.13719e-10	1.66997e-10	0.008361	1	0
BFSP1	631	broad.mit.edu	37	20	17474970	17474970	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr20:17474970G>T	uc002wpo.2	-	8	1786	c.1747C>A	c.(1747-1749)CCA>ACA	p.P583T	BFSP1_uc002wpp.2_Missense_Mutation_p.P458T|BFSP1_uc010zrn.1_Missense_Mutation_p.P444T|BFSP1_uc010zro.1_Missense_Mutation_p.P444T	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	583	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						GGTATAGATGGTTCCTCTGCA	0.597			NA											6	173					0.00198382	0.00215106	0.001984	1	0
KIAA0406	9675	broad.mit.edu	37	20	36641088	36641088	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr20:36641088G>T	uc002xhl.2	-	3	1340	c.1131C>A	c.(1129-1131)AGC>AGA	p.S377R	KIAA0406_uc002xhm.2_Missense_Mutation_p.S377R	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	377							binding				0		Myeloproliferative disorder(115;0.00874)				GGGAATGCAGGCTTTCTGACA	0.453			NA											59	134					4.48484e-38	8.32261e-38	0.00361	1	0
PPP1R16B	26051	broad.mit.edu	37	20	37546959	37546959	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr20:37546959G>C	uc002xje.2	+	11	1543	c.1354G>C	c.(1354-1356)GAC>CAC	p.D452H	PPP1R16B_uc010ggc.2_Missense_Mutation_p.D410H	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	452					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				TGAGGTGCCTGACTACAGCAT	0.622			NA											52	151					0	0	0.00361	0	0
PTPRT	11122	broad.mit.edu	37	20	40828028	40828028	+	Missense_Mutation	SNP	C	C	A	rs142326423		TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr20:40828028C>A	uc002xkg.2	-	16	2527	c.2343G>T	c.(2341-2343)TTG>TTT	p.L781F	PTPRT_uc010ggj.2_Missense_Mutation_p.L800F|PTPRT_uc010ggi.2_5'UTR	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	781	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity	p.R803R(1)		skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGCCAGCTTCCTTTGGGACA	0.562			NA											65	128					9.04393e-38	1.66999e-37	0.00361	1	0
TP53RK	112858	broad.mit.edu	37	20	45315870	45315870	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr20:45315870C>T	uc002xsk.2	-	2	507	c.284G>A	c.(283-285)GGA>GAA	p.G95E	SLC13A3_uc002xsg.1_5'Flank|SLC13A3_uc010gho.1_5'Flank|TP53RK_uc002xsj.2_Missense_Mutation_p.E97K	NM_033550	NP_291028	Q96S44	PRPK_HUMAN	p53-related protein kinase	95	Nuclear localization signal (Potential).|Protein kinase.				lipopolysaccharide biosynthetic process	membrane|nucleus	ATP binding|p53 binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Myeloproliferative disorder(115;0.0122)				GGCAGATATTCCTGAAATCAA	0.343			NA											61	180					0	0	0.00361	0	0
HRH3	11255	broad.mit.edu	37	20	60791826	60791826	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr20:60791826A>T	uc002ycf.2	-	3	871	c.574T>A	c.(574-576)TTC>ATC	p.F192I	HRH3_uc002ycg.2_Missense_Mutation_p.F192I|HRH3_uc002ych.2_Missense_Mutation_p.F192I|HRH3_uc002yci.2_Missense_Mutation_p.F192I	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	192	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	TTGTAGAAGAACTCGGCATAG	0.577			NA											12	37					0	0	0.000978	0	0
COL20A1	57642	broad.mit.edu	37	20	61956826	61956826	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr20:61956826C>A	uc011aau.1	+	28	3428	c.3328C>A	c.(3328-3330)CAT>AAT	p.H1110N	COL20A1_uc011aav.1_Missense_Mutation_p.H931N	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	1110	Collagen-like 1.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GAAGGGAGACCATGGGCTTCC	0.672			NA											16	37					5.03518e-11	7.51249e-11	0.007413	1	0
POTED	317754	broad.mit.edu	37	21	15013714	15013714	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr21:15013714G>T	uc002yjb.1	+	11	1634	c.1582G>T	c.(1582-1584)GTG>TTG	p.V528L		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	pote protein	528	Potential.					plasma membrane				ovary(3)|skin(3)	6						TGAAAACAGCGTGTTGCAGGA	0.353			NA											17	11					5.3912e-06	6.74805e-06	0.006122	1	0
KRTAP20-2	337976	broad.mit.edu	37	21	32007602	32007602	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr21:32007602A>G	uc011adg.1	+	1	20	c.20A>G	c.(19-21)TAC>TGC	p.Y7C		NM_181616	NP_853647	Q3LI61	KR202_HUMAN	keratin associated protein 20-2	7						intermediate filament				central_nervous_system(1)	1						TACAGCAACTACTATGGTGGT	0.522			NA											39	64					0	0	0.005524	0	0
TIAM1	7074	broad.mit.edu	37	21	32537381	32537381	+	Silent	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr21:32537381C>G	uc002yow.1	-	17	3361	c.2889G>C	c.(2887-2889)GGG>GGC	p.G963G	TIAM1_uc011adk.1_Silent_p.G963G|TIAM1_uc011adl.1_Silent_p.G903G	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	963					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						AAAGGCTGTGCCCTGTCAGAT	0.537			NA											12	33					0	0	0.001368	0	0
FTCD	10841	broad.mit.edu	37	21	47571592	47571593	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr21:47571592_47571593CC>AA	uc002zif.2	-	5	559_560	c.515_516GG>TT	c.(514-516)GGG>GTT	p.G172V	FTCD_uc002zig.2_Missense_Mutation_p.G172V|FTCD_uc002zih.2_Missense_Mutation_p.G172V|FTCD_uc010gqf.2_Missense_Mutation_p.G172V|FTCD_uc010gqg.1_Missense_Mutation_p.G41V	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	172	Formiminotransferase N-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	TGGCCGTGGCCCCCCAACTGGG	0.639			NA											11	62					0	0	0.004672	0	0
CABIN1	23523	broad.mit.edu	37	22	24483437	24483438	+	Missense_Mutation	DNP	GG	GG	CT			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr22:24483437_24483438GG>CT	uc002zzi.1	+	23	3423_3424	c.3296_3297GG>CT	c.(3295-3297)CGG>CCT	p.R1099P	CABIN1_uc002zzj.1_Missense_Mutation_p.R1049P|CABIN1_uc002zzl.1_Missense_Mutation_p.R1099P	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1099					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GCTCTGGCCCGGGCCAGCCGCA	0.54			NA											8	40					0	0	0.004672	0	0
SF3A1	10291	broad.mit.edu	37	22	30737734	30737734	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr22:30737734C>A	uc003ahl.2	-	7	1150	c.1018G>T	c.(1018-1020)GAG>TAG	p.E340*		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	340					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						GGAGGCTCCTCCGCCTTCTCC	0.547			NA											42	131					7.05377e-20	1.24106e-19	0.00361	1	0
CACNA1I	8911	broad.mit.edu	37	22	40030681	40030681	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr22:40030681G>T	uc003ayc.2	+	5	692	c.692G>T	c.(691-693)TGG>TTG	p.W231L	CACNA1I_uc003ayd.2_Missense_Mutation_p.W231L|CACNA1I_uc003aye.2_Missense_Mutation_p.W146L|CACNA1I_uc003ayf.2_Missense_Mutation_p.W146L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	231	I.|Helical; Name=S5 of repeat I; (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GTGCAGCTCTGGGCGGGCCTG	0.567			NA											41	89					8.16277e-20	1.42944e-19	0.006999	1	0
CHL1	10752	broad.mit.edu	37	3	431095	431095	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:431095C>A	uc003bou.2	+	19	2631	c.2360C>A	c.(2359-2361)GCT>GAT	p.A787D	CHL1_uc003bot.2_Missense_Mutation_p.A803D|CHL1_uc003bow.1_Missense_Mutation_p.A787D|CHL1_uc011asi.1_Missense_Mutation_p.A803D	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	787	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		AAGGTCCAGGCTATCAATCAA	0.502			NA											7	43					0.000274275	0.000312858	0.004482	1	0
ITPR1	3708	broad.mit.edu	37	3	4712497	4712497	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:4712497G>A	uc003bqa.2	+	20	2439	c.2091G>A	c.(2089-2091)GTG>GTA	p.V697V	ITPR1_uc010hca.1_Silent_p.V682V|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Silent_p.V682V	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	697	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGGAAGAGGTGTGGCTGTTTT	0.493			NA											3	18					0	0	0.004672	0	0
GRM7	2917	broad.mit.edu	37	3	7620820	7620820	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:7620820G>A	uc003bqm.2	+	8	2501	c.2227G>A	c.(2227-2229)GCC>ACC	p.A743T	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.A743T|GRM7_uc003bql.2_Missense_Mutation_p.A743T|GRM7_uc003bqn.1_Missense_Mutation_p.A326T|GRM7_uc010hch.1_Missense_Mutation_p.A254T	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	743	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CCCTGAGCAAGCCAGAGGGGT	0.423			NA											7	62					0	0	0.00308	0	0
RAF1	5894	broad.mit.edu	37	3	12645699	12645699	+	Missense_Mutation	SNP	G	G	A	rs80338796		TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:12645699G>A	uc003bxf.3	-	7	1185	c.770C>T	c.(769-771)TCG>TTG	p.S257L	RAF1_uc011aut.1_Missense_Mutation_p.S42L|RAF1_uc011auu.1_Missense_Mutation_p.S175L	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	257			S -> L (in NS5 and LEOPARD2; shows in vitro greater kinase activity and enhanced ERK activation than wild-type).		activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	TGTGGATGTCGACCTCTGCCT	0.527			NA	T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				28	62					0	0	0.00632	0	0
LAMB2	3913	broad.mit.edu	37	3	49166129	49166129	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:49166129T>C	uc003cwe.2	-	14	2154	c.1855A>G	c.(1855-1857)ATG>GTG	p.M619V	LAMB2_uc003cwf.1_Missense_Mutation_p.M619V	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	619	Laminin IV type B.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TCATAGTCCATAGCCTTCGGC	0.597			NA											33	45					0	0	0.009535	0	0
GBE1	2632	broad.mit.edu	37	3	81698058	81698058	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:81698058C>A	uc003dqg.2	-	6	923	c.640G>T	c.(640-642)GCT>TCT	p.A214S	GBE1_uc011bgm.1_Missense_Mutation_p.A173S	NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	214					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		TTATAAGAAGCTACTTTTCCT	0.318			NA							Glycogen_Storage_Disease_type_IV				6	9					3.59834e-05	4.2474e-05	0.001168	1	0
EPHA3	2042	broad.mit.edu	37	3	89448476	89448476	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:89448476A>T	uc003dqy.2	+	7	1665	c.1440A>T	c.(1438-1440)CAA>CAT	p.Q480H	EPHA3_uc003dqx.1_Missense_Mutation_p.Q480H|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	480	Extracellular (Potential).|Fibronectin type-III 2.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		AGCAGGAACAAGAAACAAGTT	0.368			NA								TSP Lung(6;0.00050)			15	38					0	0	0.00499	0	0
EPHA6	285220	broad.mit.edu	37	3	97356759	97356759	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:97356759C>T	uc010how.1	+	14	2660	c.2617C>T	c.(2617-2619)CTC>TTC	p.L873F	EPHA6_uc011bgp.1_3'UTR|EPHA6_uc003drs.3_Missense_Mutation_p.L265F|EPHA6_uc003drr.3_Missense_Mutation_p.L265F|EPHA6_uc003drt.2_Missense_Mutation_p.L265F|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	778	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGTCGGAATGCTCCGAGGCAT	0.428			NA											43	79					0	0	0.002522	0	0
CPA3	1359	broad.mit.edu	37	3	148586701	148586701	+	Splice_Site	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:148586701G>T	uc003ewm.2	+	3	197	c.145_splice	c.e3-1	p.L49_splice		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor						proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TATCTCTGCAGCTTGACTTCT	0.438			NA											19	45					1.67942e-08	2.30302e-08	0.006122	1	0
CPA3	1359	broad.mit.edu	37	3	148614332	148614332	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:148614332C>T	uc003ewm.2	+	11	1144	c.1092C>T	c.(1090-1092)GAC>GAT	p.D364D		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	364					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CTTCTTTAGACTGGGCTTATG	0.388			NA											6	57					0	0	0.00308	0	0
ABCC5	10057	broad.mit.edu	37	3	183700641	183700641	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:183700641C>A	uc003fmg.2	-	6	911	c.746G>T	c.(745-747)CGC>CTC	p.R249L	ABCC5_uc011bqt.1_5'UTR|ABCC5_uc010hxl.2_Missense_Mutation_p.R249L	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	249	ABC transmembrane type-1 1.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CCCCCGCAAGCGGACACCGGT	0.507			NA											20	56					1.28384e-07	1.67438e-07	0.001882	1	0
SST	6750	broad.mit.edu	37	3	187386920	187386921	+	Missense_Mutation	DNP	GC	GC	TG			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	GC	GC	-	-	GC	GC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:187386920_187386921GC>TG	uc003frn.2	-	2	405_406	c.283_284GC>CA	c.(283-285)GCT>CAT	p.A95H		NM_001048	NP_001039	P61278	SMS_HUMAN	somatostatin preproprotein	95					digestion|G-protein coupled receptor protein signaling pathway|induction of apoptosis by hormones|negative regulation of cell proliferation|response to nutrient|synaptic transmission	extracellular space	hormone activity			pancreas(1)	1	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.00444)	Bromocriptine(DB01200)|Cysteamine(DB00847)	GGGTGCCATAGCCGGGTTTGAG	0.495			NA											28	200					0	0	0.004672	0	0
LMLN	89782	broad.mit.edu	37	3	197687280	197687280	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr3:197687280C>T	uc011buo.1	+	1	210	c.188C>T	c.(187-189)CCC>CTC	p.P63L	IQCG_uc003fyp.2_5'Flank|LMLN_uc003fyt.2_Intron|LMLN_uc010iar.2_Missense_Mutation_p.P63L|LMLN_uc010ias.2_Intron|LMLN_uc003fyu.2_5'UTR	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	63					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		AGTTCCCCTCCCTGCCGGCAC	0.657			NA											36	51					0	0	0.004878	0	0
EVC2	132884	broad.mit.edu	37	4	5664968	5664968	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:5664968C>A	uc003gij.2	-	9	1065	c.1011G>T	c.(1009-1011)TGG>TGT	p.W337C	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Missense_Mutation_p.W257C	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	337						integral to membrane				large_intestine(3)|ovary(2)	5						TCTCATACTGCCAAACCTTCA	0.498			NA											26	65					4.59853e-10	6.59712e-10	0.005443	1	0
CRMP1	1400	broad.mit.edu	37	4	5837717	5837717	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:5837717G>T	uc003gip.2	-	12	1307	c.1206C>A	c.(1204-1206)GCC>GCA	p.A402A	CRMP1_uc003gin.1_Silent_p.A314A|CRMP1_uc003giq.2_Silent_p.A402A|CRMP1_uc003gir.2_Silent_p.A397A|CRMP1_uc003gis.2_Silent_p.A516A	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	402					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		CCGAGCCCACGGCAATCCGCC	0.527			NA											30	90					8.16721e-17	1.39104e-16	0.002096	1	0
TLR1	7096	broad.mit.edu	37	4	38800341	38800341	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:38800341G>T	uc003gtl.2	-	4	386	c.112C>A	c.(112-114)CAC>AAC	p.H38N		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	38	Extracellular (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TTAGGAACGTGGATGAGACCG	0.323	GBM(5;216 373 40795 46382)		NA											20	52					5.03518e-11	7.51249e-11	0.007413	1	0
PDGFRA	5156	broad.mit.edu	37	4	55139896	55139897	+	Missense_Mutation	DNP	CA	CA	AG			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:55139896_55139897CA>AG	uc003han.3	+	10	1888_1889	c.1557_1558CA>AG	c.(1555-1560)CCCACC>CCAGCC	p.T520A	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.T414A|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	520	Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TGGTGGCTCCCAGTGAGTTCCT	0.55	Pancreas(151;208 1913 7310 23853 37092)		NA	Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			15	47					0	0	0.004672	0	0
AFP	174	broad.mit.edu	37	4	74308081	74308081	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:74308081G>A	uc003hgz.1	+	5	598	c.551G>A	c.(550-552)CGC>CAC	p.R184H	AFP_uc003hha.1_Missense_Mutation_p.R184H|AFP_uc011cbg.1_5'UTR	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	184	Albumin 1.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGGGCTGCTCGCTATGACAAA	0.373			NA							Alpha-Fetoprotein_Hereditary_Persistence_of				13	25					0	0	0.001368	0	0
BMP3	651	broad.mit.edu	37	4	81974526	81974526	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:81974526A>G	uc003hmg.3	+	3	1575	c.1255A>G	c.(1255-1257)ATC>GTC	p.I419V		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	419					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						TCATGCTACCATCCAGAGTAT	0.433			NA											33	91					0	0	0.003271	0	0
HELQ	113510	broad.mit.edu	37	4	84338004	84338004	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:84338004C>A	uc003hom.2	-	17	3257	c.3078G>T	c.(3076-3078)CAG>CAT	p.Q1026H	HELQ_uc010ikb.2_Missense_Mutation_p.Q959H|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	1026							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						CACTGTATAACTGTTTTGCTC	0.353			NA						Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					15	40					2.61681e-11	3.98397e-11	0.00245	1	0
WDFY3	23001	broad.mit.edu	37	4	85724565	85724565	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:85724565C>A	uc003hpd.2	-	16	2893	c.2485G>T	c.(2485-2487)GAC>TAC	p.D829Y		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	829						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGTTTCAGGTCGGCAACATTT	0.423			NA											8	33					0.000157383	0.000180628	0.00308	1	0
MEPE	56955	broad.mit.edu	37	4	88766569	88766569	+	Silent	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:88766569T>C	uc003hqy.2	+	4	588	c.549T>C	c.(547-549)AGT>AGC	p.S183S	MEPE_uc010ikn.2_Silent_p.S70S	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	183					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		TCCCAGCAAGTATGAATTATG	0.413			NA											22	59					0	0	0.010504	0	0
NDST3	9348	broad.mit.edu	37	4	119163305	119163305	+	Splice_Site	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:119163305G>T	uc003ibx.2	+	12	2802	c.2399_splice	c.e12+1	p.T800_splice		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan							Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						AAGCTTTAACGTAAGTTTATA	0.343			NA											13	47					4.3838e-07	5.63847e-07	0.001855	1	0
FAT4	79633	broad.mit.edu	37	4	126241834	126241834	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:126241834G>C	uc003ifj.3	+	1	4268	c.4268G>C	c.(4267-4269)GGA>GCA	p.G1423A		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1423	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTTCCTCCTGGAGATATTTTC	0.423			NA											6	90					0	0	0.004482	0	0
RNF150	57484	broad.mit.edu	37	4	141832458	141832458	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:141832458C>A	uc003iio.1	-	6	1692	c.1038G>T	c.(1036-1038)CTG>CTT	p.L346L	RNF150_uc010iok.1_Silent_p.L304L|RNF150_uc003iip.1_Silent_p.L346L	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	346	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					GTGGACCTCCCAGAGAGCCCT	0.547			NA											19	63					3.51602e-12	5.48734e-12	0.008871	1	0
LRBA	987	broad.mit.edu	37	4	151682995	151682995	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:151682995C>A	uc010ipj.2	-	35	6059	c.5585G>T	c.(5584-5586)TGG>TTG	p.W1862L	LRBA_uc003ilt.3_Missense_Mutation_p.W521L|LRBA_uc003ilu.3_Missense_Mutation_p.W1862L	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1862						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AGAATTTTGCCACTCCTATAA	0.249			NA											14	58					1.3612e-06	1.72697e-06	0.003163	1	0
NAF1	92345	broad.mit.edu	37	4	164061434	164061434	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:164061434C>T	uc003iqj.2	-	5	1013	c.819G>A	c.(817-819)ATG>ATA	p.M273I	NAF1_uc010iqw.1_Missense_Mutation_p.M273I	NM_138386	NP_612395	Q96HR8	NAF1_HUMAN	nuclear assembly factor 1 homolog isoform a	273					rRNA processing|snRNA pseudouridine synthesis	cytoplasm|nucleus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding			ovary(2)	2	all_hematologic(180;0.166)	Prostate(90;0.109)				GAGCAAAATACATAGTCTCCT	0.323			NA											14	39					0	0	0.00245	0	0
ZFP42	132625	broad.mit.edu	37	4	188924130	188924130	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:188924130G>T	uc003izg.1	+	3	414	c.169G>T	c.(169-171)GAG>TAG	p.E57*	ZFP42_uc003izh.1_Nonsense_Mutation_p.E57*|ZFP42_uc003izi.1_Nonsense_Mutation_p.E57*	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	57					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		TGTGTGCTATGAGCCTGGCCC	0.542			NA											18	65					3.41278e-10	4.95318e-10	0.00499	1	0
TRIML2	205860	broad.mit.edu	37	4	189026054	189026054	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:189026054C>A	uc003izl.2	-	2	108	c.72G>T	c.(70-72)AGG>AGT	p.R24S	TRIML2_uc011cle.1_Missense_Mutation_p.R74S|TRIML2_uc011clf.1_Missense_Mutation_p.R74S	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	24	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CAAGTTTCTCCCTCGATGTGT	0.393			NA											20	73					2.4624e-09	3.45291e-09	0.008871	1	0
TRIML1	339976	broad.mit.edu	37	4	189060824	189060824	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr4:189060824G>T	uc003izm.1	+	1	227	c.112G>T	c.(112-114)GTG>TTG	p.V38L		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	38	RING-type.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CTTTTGTCTGGTGTGTCTCCT	0.527	Melanoma(31;213 1036 16579 23968 32372)		NA											57	163					3.21867e-24	5.82799e-24	0.00361	1	0
ADCY2	108	broad.mit.edu	37	5	7773143	7773143	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:7773143G>T	uc003jdz.1	+	18	2380	c.2313G>T	c.(2311-2313)GTG>GTT	p.V771V	ADCY2_uc011cmo.1_Silent_p.V591V	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	771	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TGGCCTTGGTGGGCTACAACA	0.517			NA											42	83					1.04594e-18	1.79786e-18	0.00623	1	0
TAS2R1	50834	broad.mit.edu	37	5	9629708	9629708	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:9629708T>A	uc003jem.1	-	1	756	c.437A>T	c.(436-438)AAA>ATA	p.K146I		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	146	Extracellular (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						CCCTGCATATTTGCTATGGAA	0.393			NA											16	34					0	0	0.003163	0	0
ITGA2	3673	broad.mit.edu	37	5	52356839	52356839	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:52356839G>T	uc003joy.2	+	12	1564	c.1421G>T	c.(1420-1422)GGC>GTC	p.G474V	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.G398V|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	474	Extracellular (Potential).|FG-GAP 4.				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				AATGAGAATGGCAATATCACG	0.473			NA											27	57					1.06801e-11	1.63938e-11	0.009535	1	0
ADAMTS6	11174	broad.mit.edu	37	5	64766967	64766967	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:64766967C>A	uc003jtp.2	-	3	914	c.100G>T	c.(100-102)GAA>TAA	p.E34*	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	34					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GTCAGGAATTCCTCTTTGTAA	0.343			NA											6	14					8.12818e-05	9.4449e-05	0.001984	1	0
SV2C	22987	broad.mit.edu	37	5	75621336	75621336	+	Silent	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:75621336G>C	uc003kei.1	+	13	2282	c.2148G>C	c.(2146-2148)CTG>CTC	p.L716L		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	716	Helical; (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TCGTTGGGCTGTGCCTGCCTG	0.517			NA											21	55					0	0	0.010504	0	0
VCAN	1462	broad.mit.edu	37	5	82875806	82875806	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:82875806C>T	uc003kii.3	+	14	10244	c.9888C>T	c.(9886-9888)TGC>TGT	p.C3296C	VCAN_uc003kij.3_Silent_p.C2309C|VCAN_uc010jau.2_Silent_p.C1542C|VCAN_uc003kik.3_Silent_p.C555C|VCAN_uc003kil.3_Silent_p.C1960C	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3296	Sushi.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TAGTCGCTTGCGGCCAGCCCC	0.373			NA											13	54					0	0	0.001368	0	0
SNX24	28966	broad.mit.edu	37	5	122281823	122281823	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:122281823A>T	uc011cwo.1	+	3	387	c.218A>T	c.(217-219)CAG>CTG	p.Q73L	SNX24_uc003ktf.2_Missense_Mutation_p.Q73L|SNX24_uc010jcy.2_Missense_Mutation_p.Q73L	NM_014035	NP_054754	Q9Y343	SNX24_HUMAN	SBBI31 protein	73	PX.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding				0		Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000654)|Epithelial(69;0.0016)|all cancers(49;0.0139)		GTCTTGGAACAGCGACGACAA	0.338			NA											12	27					0	0	0.00245	0	0
MEGF10	84466	broad.mit.edu	37	5	126792966	126792966	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:126792966G>T	uc003kuh.3	+	26	3741	c.3379G>T	c.(3379-3381)GAC>TAC	p.D1127Y	MEGF10_uc003kui.3_Missense_Mutation_p.D1127Y	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	1127	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.|Ser-rich.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		TAAGCAAGAGGACAGTGGTGG	0.448			NA											23	57					5.26018e-13	8.49371e-13	0.001882	1	0
PCDHA1	56147	broad.mit.edu	37	5	140167866	140167866	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:140167866C>T	uc003lhb.2	+	1	1991	c.1991C>T	c.(1990-1992)ACT>ATT	p.T664I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Missense_Mutation_p.T664I	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	664	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCACGGCCACTGTGCTTGTA	0.657			NA											28	83					0	0	0.004656	0	0
PCDHA6	56142	broad.mit.edu	37	5	140210056	140210056	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:140210056G>C	uc003lho.2	+	1	2407	c.2380G>C	c.(2380-2382)GAT>CAT	p.D794H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.D794H	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	794	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTAAATGAAGATCATGATGC	0.358			NA											26	49					0	0	0.003954	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237240	140237240	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:140237240C>A	uc003lhx.2	+	1	1607	c.1607C>A	c.(1606-1608)GCG>GAG	p.A536E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Missense_Mutation_p.A536E	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	536	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGTGAGCGCGCGCGATGGG	0.677			NA											30	24					2.12542e-12	3.34506e-12	0.00632	1	0
PCDHGB2	56103	broad.mit.edu	37	5	140741739	140741739	+	Silent	SNP	G	G	T	rs143064226	by1000genomes	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:140741739G>T	uc003ljs.1	+	1	2037	c.2037G>T	c.(2035-2037)CGG>CGT	p.R679R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Silent_p.R679R|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	679	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGACCGCCGGGAGCCCTCTG	0.597			NA											29	64					5.77227e-19	9.96786e-19	0.008361	1	0
PCDHGA9	56107	broad.mit.edu	37	5	140784598	140784598	+	Silent	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:140784598C>G	uc003lkh.1	+	1	2079	c.2079C>G	c.(2077-2079)CTC>CTG	p.L693L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.L693L	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	693	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTCTACCTCGTTGTGGCTG	0.597			NA											30	107					0	0	0.008361	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140798052	140798052	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:140798052A>T	uc003lkn.1	+	1	771	c.626A>T	c.(625-627)CAC>CTC	p.H209L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.H209L|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	209	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGCTCACCACTTGGTACTG	0.498			NA											17	69					0	0	0.004007	0	0
SH3RF2	153769	broad.mit.edu	37	5	145435760	145435760	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:145435760G>T	uc003lnt.2	+	8	1777	c.1539G>T	c.(1537-1539)CGG>CGT	p.R513R	SH3RF2_uc011dbl.1_Silent_p.R513R|SH3RF2_uc011dbm.1_5'UTR|SH3RF2_uc003lnu.2_5'UTR|SH3RF2_uc011dbn.1_5'UTR	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	513							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGAAAGGGCGGAGCAGCATGA	0.547			NA											28	47					1.17739e-12	1.88484e-12	0.005443	1	0
KCNMB1	3779	broad.mit.edu	37	5	169805858	169805858	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:169805858G>A	uc003maq.1	-	4	826	c.426C>T	c.(424-426)AAC>AAT	p.N142N	KCNIP1_uc003map.2_Intron	NM_004137	NP_004128	Q16558	KCMB1_HUMAN	potassium large conductance calcium-activated	142	Extracellular (Potential).				platelet activation|synaptic transmission		calcium-activated potassium channel activity|potassium channel regulator activity			ovary(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0165)|all_lung(126;0.026)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.175)		CGCTGGTTTCGTTCCCCCGAG	0.617			NA											8	38					0	0	0.00308	0	0
RNF182	221687	broad.mit.edu	37	6	13977460	13977461	+	Missense_Mutation	DNP	TG	TG	GT			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:13977460_13977461TG>GT	uc003nbe.2	+	3	528_529	c.110_111TG>GT	c.(109-111)CTG>CGT	p.L37R	RNF182_uc003nbf.2_Missense_Mutation_p.L37R|RNF182_uc003nbg.2_Missense_Mutation_p.L37R	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	37	RING-type.					cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			CCCAAAGTGCTGGAGTGTTGTC	0.475			NA											40	99					0	0	0.004672	0	0
OR10C1	442194	broad.mit.edu	37	6	29408489	29408489	+	Missense_Mutation	SNP	C	C	T	rs147036236	byFrequency	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:29408489C>T	uc011dlp.1	+	1	697	c.697C>T	c.(697-699)CGC>TGC	p.R233C	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTTGCGGGCCGCCGCAAGGC	0.592			NA											40	214					0	0	0.006999	0	0
OR2H1	26716	broad.mit.edu	37	6	29430484	29430484	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:29430484G>T	uc003nmi.2	+	3	1381	c.938G>T	c.(937-939)TGG>TTG	p.W313L	OR2H1_uc003nmj.1_Missense_Mutation_p.W313L|OR2H1_uc010jri.1_Missense_Mutation_p.W235L	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	313	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGGAAAGCTGGAGAGCTGCT	0.433			NA											14	41					4.36969e-10	6.29303e-10	0.001855	1	0
DNAH8	1769	broad.mit.edu	37	6	38818077	38818077	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:38818077G>A	uc003ooe.1	+	36	5199	c.4599G>A	c.(4597-4599)CAG>CAA	p.Q1533Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAATAATGCAGCGAGCTCATG	0.363			NA											18	40					0	0	0.007413	0	0
DNAH8	1769	broad.mit.edu	37	6	38891790	38891790	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:38891790G>T	uc003ooe.1	+	71	10763	c.10163G>T	c.(10162-10164)TGC>TTC	p.C3388F	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATTCTGCTGTGCACGGGATTC	0.428			NA											18	53					9.16793e-09	1.27124e-08	0.00499	1	0
ZNF318	24149	broad.mit.edu	37	6	43323347	43323347	+	Silent	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:43323347T>A	uc003oux.2	-	4	1803	c.1725A>T	c.(1723-1725)CCA>CCT	p.P575P	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	575					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GCTTTACAGCTGGAGCTGAAG	0.468			NA											38	124					0	0	0.004289	0	0
GSTA4	2941	broad.mit.edu	37	6	52850269	52850269	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:52850269C>A	uc003pbc.2	-	3	316	c.252G>T	c.(250-252)AAG>AAT	p.K84N	GSTA4_uc003pbd.2_Intron|GSTA4_uc003pbe.2_Intron|GSTA4_uc003pbf.2_Missense_Mutation_p.K84N	NM_001512	NP_001503	O15217	GSTA4_HUMAN	glutathione S-transferase alpha 4	84					glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity|protein homodimerization activity				0	Lung NSC(77;0.103)				Glutathione(DB00143)	CCTTGAGGTTCTTGCCAAAGA	0.488			NA											17	43					2.94398e-08	3.99311e-08	0.007413	1	0
BAI3	577	broad.mit.edu	37	6	69666045	69666045	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:69666045C>T	uc003pev.3	+	7	1773	c.1325C>T	c.(1324-1326)GCA>GTA	p.A442V	BAI3_uc010kak.2_Missense_Mutation_p.A442V	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	442	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity	p.A442E(1)		lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGGCCATGGGCAGAAAGCAGA	0.527			NA											3	25					0	0	0.004672	0	0
COL12A1	1303	broad.mit.edu	37	6	75841753	75841753	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:75841753G>A	uc003phs.2	-	35	6006	c.5840C>T	c.(5839-5841)CCT>CTT	p.P1947L	COL12A1_uc003pht.2_Missense_Mutation_p.P783L	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1947	Fibronectin type-III 15.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GAGGCTGTTAGGTGTAGGATT	0.453			NA											17	56					0	0	0.006122	0	0
CGA	1081	broad.mit.edu	37	6	87797884	87797884	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:87797884A>G	uc003plj.1	-	2	136	c.35T>C	c.(34-36)CTG>CCG	p.L12P		NM_000735	NP_000726	P01215	GLHA_HUMAN	glycoprotein hormones, alpha polypeptide	12					hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity			ovary(1)	1		all_cancers(76;5.98e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;5.29e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.000102)		BRCA - Breast invasive adenocarcinoma(108;0.0484)		CAATGTGACCAGAAAGATAGC	0.398			NA											4	10					0	0	0.000602	0	0
GJA10	84694	broad.mit.edu	37	6	90605016	90605017	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:90605016_90605017CC>AA	uc011eaa.1	+	1	829_830	c.829_830CC>AA	c.(829-831)CCT>AAT	p.P277N		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	277	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		CTCTTCATTGCCTGAAAGAATC	0.436			NA											17	33					0	0	0.004672	0	0
EPHA7	2045	broad.mit.edu	37	6	93967918	93967918	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:93967918C>A	uc003poe.2	-	11	2250	c.2009G>T	c.(2008-2010)GGT>GTT	p.G670V	EPHA7_uc003pof.2_Missense_Mutation_p.G665V|EPHA7_uc011eac.1_Missense_Mutation_p.G666V	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	670	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TTCTGTGTAACCAACTTTCAG	0.438			NA											36	78					1.414e-09	1.99027e-09	0.003755	1	0
SOBP	55084	broad.mit.edu	37	6	107955481	107955481	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:107955481C>A	uc003prx.2	+	6	1937	c.1433C>A	c.(1432-1434)CCG>CAG	p.P478Q		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	478	Pro-rich.						metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		CTGCTGCCCCCGCCGCCTCCG	0.706			NA											5	12					0.000602214	0.000674552	0.000602	1	0
HS3ST5	222537	broad.mit.edu	37	6	114379192	114379192	+	Silent	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:114379192G>C	uc003pwg.3	-	2	302	c.270C>G	c.(268-270)CTC>CTG	p.L90L	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Silent_p.L90L	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	90	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		TGGCCTTGGGGAGCTGCTGGA	0.572			NA											17	59					0	0	0.004007	0	0
C6orf170	221322	broad.mit.edu	37	6	121629179	121629179	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:121629179C>A	uc003pyo.1	-	5	701	c.633G>T	c.(631-633)TGG>TGT	p.W211C	C6orf170_uc003pyq.1_RNA	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	211					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		AGAGAGTAGTCCAATTTTCAC	0.338			NA											8	31					1.12685e-05	1.38718e-05	0.004482	1	0
SAMD3	154075	broad.mit.edu	37	6	130466509	130466509	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:130466509G>T	uc003qbv.2	-	12	1580	c.1254C>A	c.(1252-1254)AGC>AGA	p.S418R	SAMD3_uc003qbx.2_Missense_Mutation_p.S418R|SAMD3_uc003qbw.2_Missense_Mutation_p.S418R	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	418										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TGACAAAAAGGCTGGGATCAT	0.338			NA											6	18					1.06961e-07	1.40977e-07	0.00308	1	0
OLIG3	167826	broad.mit.edu	37	6	137815150	137815151	+	Missense_Mutation	DNP	CC	CC	TT			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:137815150_137815151CC>TT	uc003qhp.1	-	1	381_382	c.157_158GG>AA	c.(157-159)GGG>AAG	p.G53K		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	53					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		GAGGCTTTCCCCGGGCATCTTC	0.525			NA											19	115					0	0	0.004672	0	0
GRM1	2911	broad.mit.edu	37	6	146755768	146755768	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:146755768G>A	uc010khw.1	+	9	3891	c.3421G>A	c.(3421-3423)GAT>AAT	p.D1141N	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1141	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GACCCCGGATGATTCGCCTGC	0.662			NA											6	66					0	0	0.001168	0	0
TAGAP	117289	broad.mit.edu	37	6	159457971	159457971	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:159457971C>A	uc003qrz.2	-	10	1416	c.1084G>T	c.(1084-1086)GTG>TTG	p.V362L	TAGAP_uc011eft.1_Missense_Mutation_p.V299L|TAGAP_uc003qsa.2_Missense_Mutation_p.V184L	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	362					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		AGCCTGGCCACGGTGCTCACA	0.647			NA											12	61					0.000978159	0.00108911	0.000978	1	0
PDE10A	10846	broad.mit.edu	37	6	165801872	165801872	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr6:165801872T>C	uc003qun.2	-	18	1938	c.1697A>G	c.(1696-1698)CAG>CGG	p.Q566R	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.Q496R|PDE10A_uc003quo.2_Missense_Mutation_p.Q576R	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	566					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GTCGAACTTCTGCAGGTAGCT	0.527	Esophageal Squamous(22;308 615 5753 12038 40624)		NA											18	62					0	0	0.006122	0	0
SDK1	221935	broad.mit.edu	37	7	4247746	4247746	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:4247746G>T	uc003smx.2	+	37	5369	c.5230G>T	c.(5230-5232)GCA>TCA	p.A1744S	SDK1_uc010kso.2_Missense_Mutation_p.A1000S|SDK1_uc003smy.2_Missense_Mutation_p.A231S	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1744	Fibronectin type-III 11.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTACTGGGAGGCAGACAGCCA	0.562			NA											17	59					1.56452e-12	2.48327e-12	0.007413	1	0
DGKB	1607	broad.mit.edu	37	7	14647118	14647118	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:14647118G>T	uc003ssz.2	-	16	1564	c.1377C>A	c.(1375-1377)TTC>TTA	p.F459L	DGKB_uc011jxt.1_Missense_Mutation_p.F440L|DGKB_uc003sta.2_Missense_Mutation_p.F459L|DGKB_uc011jxu.1_Missense_Mutation_p.F458L	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	459	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	ATAGATACTGGAATTTTCTGT	0.274			NA											7	18					0.000157383	0.000180628	0.00308	1	0
ELMO1	9844	broad.mit.edu	37	7	36895295	36895295	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:36895295G>A	uc003tfk.1	-	22	2352	c.2045C>T	c.(2044-2046)ACG>ATG	p.T682M	ELMO1_uc003tfi.1_Missense_Mutation_p.T202M|ELMO1_uc003tfj.1_Missense_Mutation_p.T202M|ELMO1_uc011kbb.1_RNA|ELMO1_uc011kbc.1_Missense_Mutation_p.T586M|ELMO1_uc010kxg.1_Missense_Mutation_p.T682M	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	682					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GTCATTCCGCGTCAGGTCGCT	0.572			NA											34	91					0	0	0.002445	0	0
INHBA	3624	broad.mit.edu	37	7	41729603	41729603	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:41729603C>A	uc003thq.2	-	2	1161	c.926G>T	c.(925-927)CGG>CTG	p.R309L	INHBA_uc003thr.2_Missense_Mutation_p.R309L	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	309					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CAAGCCCCGCCGACGCCGGCG	0.458			NA								TSP Lung(11;0.080)			31	104					1.39806e-14	2.30741e-14	0.008361	1	0
TFEC	22797	broad.mit.edu	37	7	115624467	115624467	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:115624467G>T	uc003vhj.1	-	2	213	c.29C>A	c.(28-30)CCA>CAA	p.P10Q	TFEC_uc003vhk.1_Missense_Mutation_p.P10Q|TFEC_uc003vhl.3_Missense_Mutation_p.P10Q|TFEC_uc011kmw.1_Missense_Mutation_p.P100Q	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	10	Necessary for transcriptional transactivation.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			TTTAAGAGTTGGATTGATGAT	0.498			NA											32	80					1.39806e-14	2.30741e-14	0.008361	1	0
CAV1	857	broad.mit.edu	37	7	116199023	116199023	+	Silent	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:116199023A>G	uc003vif.1	+	3	497	c.219A>G	c.(217-219)GCA>GCG	p.A73A	CAV1_uc010lkd.1_Silent_p.A42A|CAV1_uc010lke.1_Silent_p.A42A|CAV1_uc003vig.1_RNA|CAV1_uc003vih.2_Silent_p.A42A|CAV1_uc010lkf.1_Silent_p.A42A	NM_001753	NP_001744	Q03135	CAV1_HUMAN	caveolin 1	73	Cytoplasmic (Potential).				blood coagulation|calcium ion transport|caveola assembly|cellular response to starvation|cholesterol homeostasis|cytosolic calcium ion homeostasis|inactivation of MAPK activity|interspecies interaction between organisms|leukocyte migration|lipid storage|maintenance of protein location in cell|mammary gland involution|membrane depolarization|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of endothelial cell proliferation|negative regulation of epithelial cell differentiation|negative regulation of nitric oxide biosynthetic process|negative regulation of peptidyl-serine phosphorylation|negative regulation of protein binding|negative regulation of transcription from RNA polymerase II promoter|nitric oxide homeostasis|nitric oxide metabolic process|positive regulation of calcium ion transport into cytosol|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of metalloenzyme activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of vasoconstriction|protein homooligomerization|receptor internalization|regulation of blood coagulation|regulation of fatty acid metabolic process|regulation of nitric-oxide synthase activity|regulation of smooth muscle contraction|response to calcium ion|response to estrogen stimulus|response to hypoxia|response to progesterone stimulus|skeletal muscle tissue development|T cell costimulation|triglyceride metabolic process|vasculogenesis|vesicle organization	apical plasma membrane|basolateral plasma membrane|caveola|caveola|cytosol|endoplasmic reticulum|endosome|Golgi membrane|lipid particle|perinuclear region of cytoplasm	cholesterol binding|nitric-oxide synthase binding|peptidase activator activity|protein binding|protein complex scaffold|receptor binding				0	all_epithelial(6;1.42e-06)|Lung NSC(10;0.0056)|all_lung(10;0.00609)		STAD - Stomach adenocarcinoma(10;0.00878)			ATGTGATTGCAGAACCAGAAG	0.428			NA											8	19					0	0	0.00308	0	0
GRM8	2918	broad.mit.edu	37	7	126883250	126883250	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:126883250G>T	uc003vlr.2	-	1	320	c.9C>A	c.(7-9)TGC>TGA	p.C3*	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Nonsense_Mutation_p.C3*|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	3					negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GCTTTCCCTCGCATACCATTT	0.498			NA								HNSCC(24;0.065)	OREG0003802	type=REGULATORY REGION|Gene=GRM8|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	16	43					1.5739e-10	2.30221e-10	0.004007	1	0
MGAM	8972	broad.mit.edu	37	7	141726932	141726932	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:141726932G>T	uc003vwy.2	+	9	1054	c.1000G>T	c.(1000-1002)GCG>TCG	p.A334S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	334	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CCTTCAGCCTGCGCCAGCCAT	0.383			NA											24	87					7.33532e-06	9.15075e-06	0.003954	1	0
ZNF746	155061	broad.mit.edu	37	7	149174137	149174137	+	Silent	SNP	A	A	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr7:149174137A>C	uc003wfw.2	-	6	985	c.714T>G	c.(712-714)GGT>GGG	p.G238G	ZNF746_uc010lpi.2_Silent_p.G238G	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	238					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGGAATGGACACCTGCGGTAA	0.622			NA											9	32					0	0	0.006214	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24242041	24242041	+	Silent	SNP	A	A	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:24242041A>T	uc003xdz.2	+	1	244	c.24A>T	c.(22-24)CTA>CTT	p.L8L	ADAMDEC1_uc010lub.2_5'UTR|ADAMDEC1_uc011lab.1_5'UTR	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	8					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TCTCCCAGCTACCTGCAGTGG	0.453	Ovarian(147;687 1849 3699 25981 31337)		NA											5	10					0	0	0.000602	0	0
ADAM7	8756	broad.mit.edu	37	8	24299997	24299997	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:24299997C>A	uc003xeb.2	+	2	177	c.64C>A	c.(64-66)CTT>ATT	p.L22I	ADAM7_uc003xea.1_Missense_Mutation_p.L22I	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	22	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		AAAGTTCATCCTTGGAGTAGA	0.408			NA											14	140					2.62699e-14	4.29766e-14	0.003163	1	0
CDCA2	157313	broad.mit.edu	37	8	25325745	25325745	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:25325745G>T	uc003xep.1	+	6	1030	c.551G>T	c.(550-552)GGT>GTT	p.G184V	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Missense_Mutation_p.G184V|CDCA2_uc003xeq.1_Missense_Mutation_p.G169V|CDCA2_uc003xer.1_5'UTR	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	184					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		AGAAAGGAAGGTCTCAGCGCT	0.353			NA											6	21					3.59834e-05	4.2474e-05	0.001168	1	0
PXDNL	137902	broad.mit.edu	37	8	52320868	52320868	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:52320868C>A	uc003xqu.3	-	17	3417	c.3316G>T	c.(3316-3318)GGC>TGC	p.G1106C	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1106					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GCAGCCACGCCAAACAGCCCC	0.572			NA											8	86					0.00829132	0.00883618	0.008291	1	0
NSMAF	8439	broad.mit.edu	37	8	59508123	59508123	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:59508123T>C	uc003xtt.2	-	22	2102	c.1888A>G	c.(1888-1890)AAA>GAA	p.K630E	NSMAF_uc011lee.1_Missense_Mutation_p.K661E	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	630	WD 1.				ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				TCTTACTCTTTGTGGATTTTA	0.428			NA											8	24					0	0	0.008291	0	0
ZFAND1	79752	broad.mit.edu	37	8	82626216	82626216	+	Silent	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:82626216T>A	uc003ycj.1	-	6	431	c.417A>T	c.(415-417)ACA>ACT	p.T139T	ZFAND1_uc010lzx.1_Silent_p.T139T|ZFAND1_uc003yck.1_Silent_p.T32T	NM_024699	NP_078975	Q8TCF1	ZFAN1_HUMAN	zinc finger, AN1-type domain 1	139							zinc ion binding			ovary(1)	1						CCTTTGCAGCTGTTTCACTAT	0.333			NA											6	34					0	0	0.001168	0	0
NCALD	83988	broad.mit.edu	37	8	102731625	102731625	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:102731625C>T	uc003yke.2	-	2	602	c.233G>A	c.(232-234)GGG>GAG	p.G78E	NCALD_uc003ykf.2_Missense_Mutation_p.G78E|NCALD_uc003ykg.2_Missense_Mutation_p.G78E|NCALD_uc003ykh.2_Missense_Mutation_p.G78E|NCALD_uc003yki.2_Missense_Mutation_p.G78E|NCALD_uc003ykj.2_Missense_Mutation_p.G78E|NCALD_uc003ykk.2_Missense_Mutation_p.G78E|NCALD_uc003ykl.2_Missense_Mutation_p.G78E	NM_032041	NP_114430	P61601	NCALD_HUMAN	neurocalcin delta	78	EF-hand 2.|1 (Potential).				synaptic transmission|vesicle-mediated transport	clathrin coat of trans-Golgi network vesicle|cytosol	actin binding|calcium ion binding|clathrin binding|tubulin binding				0	all_cancers(14;8.94e-08)|all_epithelial(15;7.03e-10)|Lung NSC(17;1.36e-05)|all_lung(17;2.7e-05)		all cancers(13;1.09e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000699)			GTCTATTGTCCCATCTCCATT	0.453			NA											19	136					0	0	0.006122	0	0
COL14A1	7373	broad.mit.edu	37	8	121344948	121344948	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:121344948G>A	uc003yox.2	+	42	5024	c.4759G>A	c.(4759-4761)GGA>AGA	p.G1587R	COL14A1_uc003yoz.2_Missense_Mutation_p.G552R	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1587	Triple-helical region 1 (COL2).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AGGAAGCATGGGACCGCAAGG	0.502			NA											8	15					0	0	0.008291	0	0
FER1L6	654463	broad.mit.edu	37	8	125033810	125033810	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:125033810C>A	uc003yqw.2	+	17	2240	c.2034C>A	c.(2032-2034)GCC>GCA	p.A678A	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	678	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GCAAGGAGGCCAAGGGGATCA	0.443			NA											15	95					6.72482e-11	9.95381e-11	0.003163	1	0
ZNF251	90987	broad.mit.edu	37	8	145947374	145947374	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr8:145947374C>A	uc003zdv.3	-	5	1927	c.1671G>T	c.(1669-1671)TGG>TGT	p.W557C		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	557					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TGTGAACTGTCCAGCGCAGAA	0.493			NA											33	43					2.80507e-11	4.236e-11	0.002445	1	0
PTPRD	5789	broad.mit.edu	37	9	8521338	8521338	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:8521338G>T	uc003zkk.2	-	19	1611	c.900C>A	c.(898-900)TAC>TAA	p.Y300*	PTPRD_uc003zkp.2_Nonsense_Mutation_p.Y300*|PTPRD_uc003zkq.2_Nonsense_Mutation_p.Y300*|PTPRD_uc003zkr.2_Nonsense_Mutation_p.Y294*|PTPRD_uc003zks.2_Nonsense_Mutation_p.Y290*|PTPRD_uc003zkl.2_Nonsense_Mutation_p.Y300*|PTPRD_uc003zkm.2_Nonsense_Mutation_p.Y287*|PTPRD_uc003zkn.2_Nonsense_Mutation_p.Y300*|PTPRD_uc003zko.2_Nonsense_Mutation_p.Y297*	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	300	Extracellular (Potential).|Ig-like C2-type 3.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CAACACAGGTGTAATTTGCTG	0.423			NA								TSP Lung(15;0.13)			10	50					3.07112e-06	3.85699e-06	0.000978	1	0
SH3GL2	6456	broad.mit.edu	37	9	17791273	17791274	+	Nonsense_Mutation	DNP	GG	GG	AT			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:17791273_17791274GG>AT	uc003zna.2	+	7	957_958	c.669_670GG>AT	c.(667-672)CTGGAG>CTATAG	p.E224*	SH3GL2_uc011lmy.1_Nonsense_Mutation_p.E177*	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	224	BAR.|Potential.				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		AAGCTCAGCTGGAGTACCACAA	0.46			NA											18	87					0	0	0.004672	0	0
FRMPD1	22844	broad.mit.edu	37	9	37692734	37692734	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:37692734G>A	uc004aag.1	+	2	140	c.96G>A	c.(94-96)TCG>TCA	p.S32S	FRMPD1_uc004aah.1_Silent_p.S32S	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	32						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GGGACAGCTCGGCCCGGTAAG	0.547			NA											4	73					0	0	0.009096	0	0
FRMPD1	22844	broad.mit.edu	37	9	37740199	37740199	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:37740199G>T	uc004aag.1	+	15	1718	c.1674G>T	c.(1672-1674)CAG>CAT	p.Q558H	FRMPD1_uc004aah.1_Missense_Mutation_p.Q558H|FRMPD1_uc011lqm.1_Missense_Mutation_p.Q380H|FRMPD1_uc011lqn.1_Missense_Mutation_p.Q427H	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	558						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		AGGAGGAGCAGCCTCCTGGGA	0.632			NA											30	50					1.68575e-08	2.30325e-08	0.007291	1	0
C9orf156	51531	broad.mit.edu	37	9	100678466	100678466	+	Silent	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:100678466T>A	uc004axv.1	-	2	308	c.231A>T	c.(229-231)CTA>CTT	p.L77L	C9orf156_uc004axw.1_5'UTR|C9orf156_uc004axx.1_5'UTR|C9orf156_uc010msq.1_5'UTR	NM_016481	NP_057565	Q9BU70	NAP1_HUMAN	Nef associated protein 1	77					interspecies interaction between organisms		hydrolase activity				0		Acute lymphoblastic leukemia(62;0.158)				AAAACTGTTCTAGGCCCATCA	0.408			NA											7	31					0	0	0.004482	0	0
OR13F1	138805	broad.mit.edu	37	9	107267317	107267317	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:107267317G>T	uc011lvm.1	+	1	774	c.774G>T	c.(772-774)ATG>ATT	p.M258I		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						CTCTCTCCATGCACCTGAAGC	0.478			NA											25	62					2.98393e-07	3.85123e-07	0.00278	1	0
SLC44A1	23446	broad.mit.edu	37	9	108097868	108097868	+	Silent	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:108097868C>T	uc004bcn.2	+	4	515	c.294C>T	c.(292-294)TGC>TGT	p.C98C	SLC44A1_uc010mtk.1_Silent_p.C98C	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	98	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	TGGATCCATGCAACCTGGACT	0.403			NA											21	53					0	0	0.008871	0	0
NR5A1	2516	broad.mit.edu	37	9	127262971	127262971	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:127262971C>T	uc004boo.1	-	4	455	c.268G>A	c.(268-270)GGT>AGT	p.G90S		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	90					cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						TTCCGGCCACCCCTCATACGG	0.587			NA											18	49					0	0	0.008871	0	0
NUP188	23511	broad.mit.edu	37	9	131730940	131730940	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:131730940G>T	uc004bws.1	+	9	763	c.741G>T	c.(739-741)AGG>AGT	p.R247S		NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	247					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						TTGGTAGTAGGCAGACCAATA	0.393			NA											7	53					1.12685e-05	1.38718e-05	0.004482	1	0
GPR107	57720	broad.mit.edu	37	9	132863393	132863393	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:132863393G>A	uc004bze.2	+	12	1249	c.1022G>A	c.(1021-1023)GGG>GAG	p.G341E	GPR107_uc004bzb.2_Missense_Mutation_p.G152E|GPR107_uc004bzc.3_RNA|GPR107_uc011mbx.1_Missense_Mutation_p.G341E|GPR107_uc004bzd.2_Missense_Mutation_p.G341E	NM_001136557	NP_001130029	Q5VW38	GP107_HUMAN	G protein-coupled receptor 107 isoform 1	341	Helical; Name=3; (Potential).					integral to membrane				upper_aerodigestive_tract(1)	1		Ovarian(14;0.000531)				AGTTTGAAAGGGGCGCTACTC	0.428			NA											30	67					0	0	0.007291	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134471745	134471745	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:134471745C>A	uc004cbc.2	-	14	2201	c.2071G>T	c.(2071-2073)GAC>TAC	p.D691Y	RAPGEF1_uc004cbb.2_Missense_Mutation_p.D709Y|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Missense_Mutation_p.D866Y|RAPGEF1_uc004cbd.2_Missense_Mutation_p.D696Y	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	691	N-terminal Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		CCGCGGACGTCCGGCCCGTCA	0.527			NA											11	30					9.31168e-06	1.15391e-05	0.001855	1	0
NOTCH1	4851	broad.mit.edu	37	9	139409742	139409742	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr9:139409742C>A	uc004chz.2	-	12	2014	c.2014G>T	c.(2014-2016)GGG>TGG	p.G672W	NOTCH1_uc004cia.1_5'Flank	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	672	Extracellular (Potential).|EGF-like 17; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GGCCGCTCACCTGTGTAGCCC	0.637			NA	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			20	35					8.04996e-18	1.37736e-17	0.001882	1	0
PRKX	5613	broad.mit.edu	37	X	3533931	3533931	+	Silent	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:3533931G>A	uc010nde.2	-	7	1243	c.876C>T	c.(874-876)AAC>AAT	p.N292N		NM_005044	NP_005035	P51817	PRKX_HUMAN	protein kinase, X-linked	292	Protein kinase.						ATP binding|cAMP-dependent protein kinase activity			skin(2)|lung(1)	3		all_lung(23;0.000396)|Lung NSC(23;0.00123)				CATTCGCCCCGTTCTTCAAAA	0.433			NA											6	18					0	0	0.001984	0	0
ASB9	140462	broad.mit.edu	37	X	15287938	15287938	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:15287938G>T	uc004cwl.2	-	1	306	c.59C>A	c.(58-60)CCT>CAT	p.P20H	ASB9_uc004cwk.2_Missense_Mutation_p.P20H|ASB9_uc004cwm.2_Missense_Mutation_p.P20H|ASB9_uc010ner.2_Missense_Mutation_p.P20H|ASB9_uc004cwn.2_Missense_Mutation_p.P20H	NM_001031739	NP_001026909	Q96DX5	ASB9_HUMAN	ankyrin repeat and SOCS box-containing 9 isoform	20					intracellular signal transduction						0	Hepatocellular(33;0.183)					CCTGATGCCAGGAAAGTCCCT	0.577			NA											18	69					1.28384e-07	1.67438e-07	0.001882	1	0
PHEX	5251	broad.mit.edu	37	X	22132685	22132685	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:22132685A>G	uc004dah.2	+	11	1486	c.1283A>G	c.(1282-1284)CAG>CGG	p.Q428R	PHEX_uc011mjr.1_Missense_Mutation_p.Q428R|PHEX_uc011mjs.1_Missense_Mutation_p.Q331R	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	428	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						GTGTACTTCCAGGAAGATAAG	0.408			NA											8	41					0	0	0.00308	0	0
PCYT1B	9468	broad.mit.edu	37	X	24608231	24608231	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:24608231C>G	uc004dbi.2	-	4	628	c.395G>C	c.(394-396)AGA>ACA	p.R132T	PCYT1B_uc004dbk.3_Missense_Mutation_p.R132T|PCYT1B_uc004dbj.2_Missense_Mutation_p.R114T	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	132	Catalytic (Potential).					endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	AGCTTCGTATCTCTCGGCTTC	0.458			NA											12	37					0	0	0.000978	0	0
GK	2710	broad.mit.edu	37	X	30738765	30738765	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:30738765G>A	uc004dch.3	+	17	1443	c.1264G>A	c.(1264-1266)GGA>AGA	p.G422R	GK_uc010ngj.2_Missense_Mutation_p.G416R|GK_uc004dci.3_Missense_Mutation_p.G416R|GK_uc011mjz.1_Missense_Mutation_p.G217R|GK_uc011mka.1_Missense_Mutation_p.G259R|GK_uc010ngk.2_Missense_Mutation_p.G211R	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	422					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						TCGAGACTGTGGAATTCCACT	0.328			NA											15	62					0	0	0.004007	0	0
DMD	1756	broad.mit.edu	37	X	32380912	32380912	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:32380912G>T	uc004dda.1	-	37	5562	c.5318C>A	c.(5317-5319)ACT>AAT	p.T1773N	DMD_uc004dcw.2_Missense_Mutation_p.T429N|DMD_uc004dcx.2_Missense_Mutation_p.T432N|DMD_uc004dcz.2_Missense_Mutation_p.T1650N|DMD_uc004dcy.1_Missense_Mutation_p.T1769N|DMD_uc004ddb.1_Missense_Mutation_p.T1765N|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1773	Spectrin 12.|Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TACCTTTCCAGTCTTAATTCT	0.483			NA											33	93					2.68265e-12	4.20432e-12	0.002836	1	0
DMD	1756	broad.mit.edu	37	X	32481653	32481653	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:32481653C>A	uc004dda.1	-	25	3579	c.3335G>T	c.(3334-3336)GGG>GTG	p.G1112V	DMD_uc004dcz.2_Missense_Mutation_p.G989V|DMD_uc004dcy.1_Missense_Mutation_p.G1108V|DMD_uc004ddb.1_Missense_Mutation_p.G1104V|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1112	Spectrin 7.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TATCTTCTGCCCACCTTCATT	0.388			NA											4	7					0.00909568	0.00961102	0.009096	1	0
CXorf22	170063	broad.mit.edu	37	X	35970075	35970075	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:35970075C>A	uc004ddj.2	+	6	1100	c.1041C>A	c.(1039-1041)ACC>ACA	p.T347T	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	347										large_intestine(1)|lung(1)|ovary(1)	3						TTTGTTTCACCCCAAAGTAAG	0.259			NA											9	54					1.33987e-11	2.04824e-11	0.008291	1	0
BCOR	54880	broad.mit.edu	37	X	39921532	39921532	+	Nonsense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:39921532G>A	uc004den.3	-	10	4580	c.4288C>T	c.(4288-4290)CAG>TAG	p.Q1430*	BCOR_uc004dep.3_Nonsense_Mutation_p.Q1396*|BCOR_uc004deo.3_Nonsense_Mutation_p.Q1378*|BCOR_uc010nhb.2_Nonsense_Mutation_p.Q138*|BCOR_uc004dem.3_Nonsense_Mutation_p.Q1396*	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1430					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						TGTGTGGACTGGGAGGCTGGT	0.582			NA											6	19					0	0	0.001984	0	0
SLC9A7	84679	broad.mit.edu	37	X	46522080	46522080	+	Splice_Site	SNP	T	T	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:46522080T>G	uc004dgu.1	-	6	802	c.794_splice	c.e6-1	p.V265_splice	SLC9A7_uc004dgv.1_Splice_Site_p.V265_splice	NM_032591	NP_115980	Q96T83	SL9A7_HUMAN	solute carrier family 9, member 7						regulation of pH	Golgi membrane|integral to membrane|recycling endosome membrane|trans-Golgi network	potassium:hydrogen antiporter activity|protein homodimerization activity|sodium:hydrogen antiporter activity			ovary(2)	2						GCACAGTCACTGAAAAGTGAG	0.418	Pancreas(118;454 1696 1930 13865 39976)		NA											9	20					0	0	0.006214	0	0
SLC9A7	84679	broad.mit.edu	37	X	46618218	46618218	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:46618218G>C	uc004dgu.1	-	1	255	c.247C>G	c.(247-249)CTC>GTC	p.L83V	SLC9A7_uc004dgv.1_Missense_Mutation_p.L83V	NM_032591	NP_115980	Q96T83	SL9A7_HUMAN	solute carrier family 9, member 7	83	Helical; (Potential).				regulation of pH	Golgi membrane|integral to membrane|recycling endosome membrane|trans-Golgi network	potassium:hydrogen antiporter activity|protein homodimerization activity|sodium:hydrogen antiporter activity			ovary(2)	2						AGGATGGTGAGCGTGAGCAGC	0.627	Pancreas(118;454 1696 1930 13865 39976)		NA											11	40					0	0	0.000978	0	0
CDK16	5127	broad.mit.edu	37	X	47083104	47083104	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:47083104C>T	uc004dho.2	+	2	544	c.148C>T	c.(148-150)CGT>TGT	p.R50C	CDK16_uc011mli.1_Missense_Mutation_p.R56C|CDK16_uc011mlj.1_Missense_Mutation_p.R50C|CDK16_uc011mlk.1_Missense_Mutation_p.R50C|CDK16_uc011mll.1_Missense_Mutation_p.R124C	NM_006201	NP_006192	Q00536	CDK16_HUMAN	PCTAIRE protein kinase 1 isoform 1	50							ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)	1						GGCCCCCACACGTGCTGCTCC	0.637			NA											3	23					0	0	0.004672	0	0
TBC1D25	4943	broad.mit.edu	37	X	48418713	48418713	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:48418713C>A	uc004dka.1	+	6	1528	c.1417C>A	c.(1417-1419)CCT>ACT	p.P473T	TBC1D25_uc011mly.1_Missense_Mutation_p.P415T|TBC1D25_uc004dkb.1_Missense_Mutation_p.P219T|TBC1D25_uc011mlz.1_Missense_Mutation_p.P219T|TBC1D25_uc011mma.1_Missense_Mutation_p.P219T|TBC1D25_uc004dkc.1_Missense_Mutation_p.P219T|TBC1D25_uc011mmb.1_Missense_Mutation_p.P477T|TBC1D25_uc011mmc.1_Missense_Mutation_p.P219T|TBC1D25_uc011mmd.1_Missense_Mutation_p.P219T	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	473						intracellular	Rab GTPase activator activity			ovary(1)	1						CATGCTGAGGCCTGCTGGTGG	0.632			NA											17	45					1.99824e-07	2.59701e-07	0.00499	1	0
GLOD5	392465	broad.mit.edu	37	X	48629391	48629391	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:48629391G>A	uc011mmh.1	+	3	291	c.250G>A	c.(250-252)GAG>AAG	p.E84K		NM_001080489	NP_001073958			glyoxalase domain containing 5												0						TAACCTCCACGAGGTGGGAAA	0.498			NA											5	23					0	0	0.001168	0	0
CACNA1F	778	broad.mit.edu	37	X	49065126	49065126	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:49065126G>T	uc004dnb.2	-	43	5067	c.5005C>A	c.(5005-5007)CCC>ACC	p.P1669T	CACNA1F_uc010nip.2_Missense_Mutation_p.P1658T	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1669	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CGAGCTGAGGGCTGGGAGACC	0.567			NA											20	57					9.95505e-16	1.6802e-15	0.002299	1	0
DGKK	139189	broad.mit.edu	37	X	50111949	50111949	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:50111949G>T	uc010njr.1	-	29	3866	c.3806C>A	c.(3805-3807)TCT>TAT	p.S1269Y		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	1269	PDZ-binding.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					CTACAGTTGAGATCTCGATGG	0.388			NA											13	31					3.41278e-10	4.95318e-10	0.00499	1	0
CYSLTR1	10800	broad.mit.edu	37	X	77529058	77529058	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:77529058C>A	uc004edb.2	-	3	586	c.186G>T	c.(184-186)ATG>ATT	p.M62I	CYSLTR1_uc010nma.2_Missense_Mutation_p.M62I|CYSLTR1_uc010nmb.2_Missense_Mutation_p.M62I	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	62	Helical; Name=2; (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	CTAAATTAATCATGTATACTT	0.413			NA											9	38					0.00448238	0.00480439	0.004482	1	0
P2RY10	27334	broad.mit.edu	37	X	78216382	78216382	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:78216382G>A	uc004ede.2	+	4	734	c.365G>A	c.(364-366)TGT>TAT	p.C122Y	P2RY10_uc004edf.2_Missense_Mutation_p.C122Y	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	122	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						GCCAGCATTTGTTTCCTGACG	0.507			NA											49	122					0	0	0.00361	0	0
KLHL4	56062	broad.mit.edu	37	X	86877411	86877411	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:86877411A>C	uc004efb.2	+	5	1307	c.1125A>C	c.(1123-1125)TTA>TTC	p.L375F	KLHL4_uc004efa.2_Missense_Mutation_p.L375F	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	375						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GACTGCCATTACTCCCACCAC	0.393			NA											31	76					0	0	0.002096	0	0
PCDH11X	27328	broad.mit.edu	37	X	91873430	91873430	+	Nonsense_Mutation	SNP	C	C	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:91873430C>T	uc004efk.1	+	7	4380	c.3535C>T	c.(3535-3537)CAG>TAG	p.Q1179*	PCDH11X_uc004efl.1_Nonsense_Mutation_p.Q1169*|PCDH11X_uc004efo.1_Nonsense_Mutation_p.Q1142*|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Nonsense_Mutation_p.Q1171*|PCDH11X_uc004efn.1_Nonsense_Mutation_p.Q1161*	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1179	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ACCACTGTCACAGGCCTCTAC	0.587	NSCLC(38;925 1092 2571 38200 45895)		NA											37	128					0	0	0.004289	0	0
CXorf57	55086	broad.mit.edu	37	X	105855611	105855611	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:105855611G>C	uc004emi.3	+	1	452	c.301G>C	c.(301-303)GAT>CAT	p.D101H	CXorf57_uc004emj.3_Missense_Mutation_p.D101H|CXorf57_uc004emh.2_Missense_Mutation_p.D101H	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	101										ovary(1)|lung(1)|breast(1)	3						GACGATCTCAGATGGGGTGTA	0.498			NA											49	116					0	0	0.00361	0	0
PRPS1	5631	broad.mit.edu	37	X	106885667	106885667	+	Silent	SNP	C	C	T	rs61752962	byFrequency	TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:106885667C>T	uc004ene.3	+	4	682	c.477C>T	c.(475-477)ATC>ATT	p.I159I	PRPS1_uc010npg.2_Silent_p.I126I|PRPS1_uc011msj.1_Intron	NM_002764	NP_002755	P60891	PRPS1_HUMAN	phosphoribosyl pyrophosphate synthetase 1	159					5-phosphoribose 1-diphosphate biosynthetic process|hypoxanthine biosynthetic process|nervous system development|nucleoside metabolic process|purine nucleotide biosynthetic process|pyrimidine nucleotide biosynthetic process|ribonucleoside monophosphate biosynthetic process|urate biosynthetic process	cytosol	ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			breast(3)|large_intestine(1)	4						GGGAGAATATCTCTGAGTGGA	0.428			NA											3	58					0	0	0.004672	0	0
IRS4	8471	broad.mit.edu	37	X	107979005	107979005	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:107979005C>A	uc004eoc.2	-	1	603	c.570G>T	c.(568-570)TGG>TGT	p.W190C		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	190	PH.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GCAGCAAGTACCAGCTTTCCT	0.662			NA											14	42					1.05317e-09	1.488e-09	0.00245	1	0
DOCK11	139818	broad.mit.edu	37	X	117676698	117676698	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:117676698A>G	uc004eqp.2	+	2	176	c.113A>G	c.(112-114)AAA>AGA	p.K38R		NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	38					blood coagulation	cytosol	GTP binding			ovary(3)	3						GAAAAGGCCAAAGTTGTTGAG	0.368			NA											40	84					0	0	0.00623	0	0
CT47B1	643311	broad.mit.edu	37	X	120008948	120008948	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:120008948C>A	uc011muc.1	-	1	832	c.577G>T	c.(577-579)GCT>TCT	p.A193S		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	193											0						ACCGACGCAGCCTCCTGGATC	0.706			NA											47	104					5.20006e-24	9.32511e-24	0.002852	1	0
CT47B1	643311	broad.mit.edu	37	X	120009178	120009178	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:120009178G>T	uc011muc.1	-	1	602	c.347C>A	c.(346-348)CCG>CAG	p.P116Q		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	116											0						GCCCGCCGCCGGGTACCGACG	0.527			NA											27	41					3.6726e-16	6.22673e-16	0.003954	1	0
UTP14A	10813	broad.mit.edu	37	X	129059173	129059173	+	Splice_Site	SNP	T	T	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:129059173T>A	uc004euz.2	+	12	1777	c.1749_splice	c.e12+2	p.L583_splice	UTP14A_uc011mup.1_Splice_Site_p.L531_splice|UTP14A_uc011muq.1_Splice_Site_p.L529_splice	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,						rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						GAGGAGCTGGTGAGCAGAGCC	0.483			NA											34	101					0	0	0.002445	0	0
IGSF1	3547	broad.mit.edu	37	X	130416558	130416558	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:130416558G>T	uc004ewd.2	-	7	1344	c.1106C>A	c.(1105-1107)ACC>AAC	p.T369N	IGSF1_uc004ewe.3_Missense_Mutation_p.T358N|IGSF1_uc004ewf.2_Missense_Mutation_p.T349N	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	369	Ig-like C2-type 4.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						ATCGATGCTGGTGGCATCCAA	0.463			NA											39	51					7.04047e-22	1.25052e-21	0.005524	1	0
CT45A5	441521	broad.mit.edu	37	X	134947917	134947917	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:134947917G>T	uc004eze.2	-	3	653	c.408C>A	c.(406-408)TGC>TGA	p.C136*	CT45A5_uc011mvu.1_Nonsense_Mutation_p.C136*	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5	136											0						TTCGTCCAAGGCATCGGATTT	0.398			NA											42	93					1.59361e-14	2.61857e-14	0.006999	1	0
SLC9A6	10479	broad.mit.edu	37	X	135067901	135067901	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:135067901G>T	uc004ezj.2	+	1	316	c.240G>T	c.(238-240)CTG>CTT	p.L80L	SLC9A6_uc004ezk.2_Silent_p.L80L|SLC9A6_uc011mvx.1_Silent_p.L28L	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	80	Helical; (Potential).				regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TCATCCTGCTGCTCACCCTCA	0.597			NA											38	167					2.05212e-20	3.62768e-20	0.005524	1	0
MAGEC3	139081	broad.mit.edu	37	X	140984900	140984900	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:140984900C>A	uc011mwp.1	+	7	1356	c.1356C>A	c.(1354-1356)CCC>CCA	p.P452P	MAGEC3_uc004fbs.2_Silent_p.P154P|MAGEC3_uc010nsj.2_Silent_p.P154P	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	452										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AATCCTTGCCCAGGTATGCCC	0.502			NA											28	43					1.04121e-07	1.38211e-07	0.005443	1	0
SLITRK2	84631	broad.mit.edu	37	X	144904758	144904758	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:144904758G>T	uc004fcd.2	+	5	1805	c.815G>T	c.(814-816)AGT>ATT	p.S272I	SLITRK2_uc010nsp.2_Missense_Mutation_p.S272I|SLITRK2_uc010nso.2_Missense_Mutation_p.S272I|SLITRK2_uc011mwq.1_Missense_Mutation_p.S272I|SLITRK2_uc011mwr.1_Missense_Mutation_p.S272I|SLITRK2_uc011mws.1_Missense_Mutation_p.S272I|SLITRK2_uc004fcg.2_Missense_Mutation_p.S272I|SLITRK2_uc011mwt.1_Missense_Mutation_p.S272I	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	272	Extracellular (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					AGTGATTCCAGTCAGAGGGGC	0.572			NA											50	104					6.31075e-24	1.12627e-23	0.00361	1	0
CXorf40B	541578	broad.mit.edu	37	X	149101926	149101926	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:149101926A>G	uc004fdy.2	-	4	683	c.167T>C	c.(166-168)CTG>CCG	p.L56P	CXorf40B_uc011mxs.1_RNA	NM_001013845	NP_001013867	Q96DE9	CX04B_HUMAN	hypothetical protein LOC541578	56											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCACCAGCAGCTCCCGACA	0.587			NA											35	153					0	0	0.002836	0	0
MTMR1	8776	broad.mit.edu	37	X	149901131	149901131	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:149901131G>C	uc004fei.2	+	9	1120	c.985G>C	c.(985-987)GAT>CAT	p.D329H	MTMR1_uc011mya.1_Missense_Mutation_p.D235H|MTMR1_uc004feg.1_Missense_Mutation_p.D329H|MTMR1_uc004feh.1_Missense_Mutation_p.D337H|MTMR1_uc004fej.2_RNA|MTMR1_uc010ntf.2_RNA	NM_003828	NP_003819	Q13613	MTMR1_HUMAN	myotubularin-related protein 1	329	Myotubularin phosphatase.					plasma membrane	protein tyrosine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AACAATAATGGATGCTAACGC	0.438			NA											15	36					0	0	0.00245	0	0
PASD1	139135	broad.mit.edu	37	X	150840152	150840152	+	Silent	SNP	C	C	A			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:150840152C>A	uc004fev.3	+	13	1670	c.1338C>A	c.(1336-1338)CTC>CTA	p.L446L		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	446						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCGGCCTCTCCCACATCCCA	0.498			NA											35	99					1.62565e-12	2.56935e-12	0.002445	1	0
CETN2	1069	broad.mit.edu	37	X	151998262	151998262	+	Silent	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:151998262G>T	uc004fgq.2	-	2	93	c.46C>A	c.(46-48)CGA>AGA	p.R16R	CETN2_uc004fgr.2_5'UTR|NSDHL_uc004fgt.1_5'Flank|NSDHL_uc004fgs.1_5'Flank	NM_004344	NP_004335	P41208	CETN2_HUMAN	caltractin	16	Required for self-assembly.				cell division|centriole replication|G2/M transition of mitotic cell cycle|mitosis|nucleotide-excision repair|regulation of cytokinesis	centriole|cytosol|XPC complex	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					ATTCTTTTTCGCTGAGAACTT	0.408			NA						Direct_reversal_of_damage|NER					24	67					5.35356e-11	7.95569e-11	0.00278	1	0
NSDHL	50814	broad.mit.edu	37	X	152018931	152018931	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:152018931G>T	uc004fgt.1	+	4	492	c.231G>T	c.(229-231)CAG>CAT	p.Q77H	NSDHL_uc004fgs.1_Missense_Mutation_p.Q77H	NM_001129765	NP_001123237	Q15738	NSDHL_HUMAN	NAD(P) dependent steroid dehydrogenase-like	77					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity|sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity				0	Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	ATAATCCCCAGGTGCGGTTCT	0.537			NA											56	179					4.64219e-42	8.70119e-42	0.00361	1	0
L1CAM	3897	broad.mit.edu	37	X	153136566	153136566	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:153136566G>T	uc004fjb.2	-	5	577	c.469C>A	c.(469-471)CCT>ACT	p.P157T	L1CAM_uc004fjc.2_Missense_Mutation_p.P157T|L1CAM_uc010nuo.2_Missense_Mutation_p.P152T|L1CAM_uc004fjd.1_5'Flank|L1CAM_uc004fje.1_Missense_Mutation_p.P152T	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	157	Extracellular (Potential).|Ig-like C2-type 2.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGGTTGCAAGGCAGAACCACT	0.637			NA											13	50					4.36969e-10	6.29303e-10	0.001855	1	0
FLNA	2316	broad.mit.edu	37	X	153590841	153590841	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:153590841T>C	uc004fkk.2	-	17	2759	c.2510A>G	c.(2509-2511)AAG>AGG	p.K837R	FLNA_uc010nuu.1_Missense_Mutation_p.K837R	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	837	Filamin 6.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGGCGTGTACTTGACCGTGAA	0.592			NA											35	122					0	0	0.003271	0	0
VAMP7	6845	broad.mit.edu	37	X	155171606	155171607	+	Nonsense_Mutation	DNP	GA	GA	TT			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	GA	GA	-	-	GA	GA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:155171606_155171607GA>TT	uc004fnr.2	+	8	828_829	c.654_655GA>TT	c.(652-657)GTGAAG>GTTTAG	p.K219*	VAMP7_uc004fnt.2_Nonsense_Mutation_p.K178*|VAMP7_uc011naa.1_Nonsense_Mutation_p.K180*|VAMP7_uc011nab.1_Nonsense_Mutation_p.K118*|VAMP7_uc004fns.2_Missense_Mutation_p.E196L|VAMP7_uc011nac.1_Nonsense_Mutation_p.K152*	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	219	Vesicular (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAAGCTGTGTGAAGAAATAGGA	0.396			NA											4	33					0	0	0.004672	0	0
IL9R	3581	broad.mit.edu	37	X	155233457	155233457	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:155233457C>G	uc004fnv.1	+	4	549	c.370C>G	c.(370-372)CAC>GAC	p.H124D	IL9R_uc010nvn.2_Missense_Mutation_p.H103D|IL9R_uc004fnu.1_Silent_p.T168T	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	124	Extracellular (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CACTTTCCACCACTGCATGTC	0.622			NA											12	44					0	0	0.000978	0	0
GPATCH4	54865	broad.mit.edu	37	1	156565503	156565504	+	Frame_Shift_Ins	INS	-	-	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:156565503_156565504insT	uc001fpm.2	-	8	668_669	c.629_630insA	c.(628-630)AAGfs	p.K210fs	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.2_Frame_Shift_Ins_p.K205fs	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1	205	Potential.					intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTTTCTTTTTCTTTTTTTTGGG	0.535			NA											7	133	---	---	---	---	NA	NA	NA	NA	NA
RGS21	431704	broad.mit.edu	37	1	192335245	192335245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr1:192335245delT	uc001gsh.2	+	5	624	c.450delT	c.(448-450)CCTfs	p.P150fs		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	150					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|skin(1)	2						AATGGCTCCCTTTTTTGTGAG	0.338			NA											9	20	---	---	---	---	NA	NA	NA	NA	NA
LOC653544	653544	broad.mit.edu	37	10	135491055	135491055	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr10:135491055delC	uc010qvi.1	+	1	777	c.666delC	c.(664-666)GGCfs	p.G222fs		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	222						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGCAGGCAGGCGGCCTGTGCA	0.731			NA											21	684	---	---	---	---	NA	NA	NA	NA	NA
OVCH1	341350	broad.mit.edu	37	12	29630297	29630297	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr12:29630297delG	uc001rix.1	-	11	1223	c.1223delC	c.(1222-1224)ACTfs	p.T408fs		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	408	CUB 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					CTGTACAGCAGTAACGGTAAG	0.458			NA											18	105	---	---	---	---	NA	NA	NA	NA	NA
NOL4	8715	broad.mit.edu	37	18	31803106	31803106	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr18:31803106delG	uc010dmi.2	-	1	341	c.112delC	c.(112-114)CAGfs	p.Q38fs	NOL4_uc002kxr.3_5'Flank|NOL4_uc010xbt.1_5'Flank|NOL4_uc010dmh.2_5'Flank|NOL4_uc010xbu.1_Frame_Shift_Del_p.Q38fs|NOL4_uc002kxt.3_Frame_Shift_Del_p.Q38fs	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	38						nucleolus	RNA binding			ovary(3)	3						TTGAGGAGCTGGACGATCCGT	0.577			NA											26	105	---	---	---	---	NA	NA	NA	NA	NA
NCR1	9437	broad.mit.edu	37	19	55420680	55420680	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr19:55420680delC	uc002qib.2	+	4	470	c.432delC	c.(430-432)TGCfs	p.C144fs	NCR1_uc002qic.2_Frame_Shift_Del_p.C144fs|NCR1_uc002qie.2_Frame_Shift_Del_p.C144fs|NCR1_uc002qid.2_Frame_Shift_Del_p.C49fs|NCR1_uc002qif.2_Frame_Shift_Del_p.C49fs|NCR1_uc010esj.2_Frame_Shift_Del_p.C37fs	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	144	Extracellular (Potential).|Ig-like 2.				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		CCTTCTACTGCCGTCTAGACA	0.562			NA											9	47	---	---	---	---	NA	NA	NA	NA	NA
DSCAM	1826	broad.mit.edu	37	21	41648136	41648137	+	Frame_Shift_Ins	INS	-	-	T			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr21:41648136_41648137insT	uc002yyq.1	-	11	2695_2696	c.2243_2244insA	c.(2242-2244)AATfs	p.N748fs	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	748	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCAACGACCCATTGCTGAGAAC	0.525	Melanoma(134;970 1778 1785 21664 32388)		NA											20	49	---	---	---	---	NA	NA	NA	NA	NA
APOBEC3D	140564	broad.mit.edu	37	22	39421324	39421324	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr22:39421324delG	uc011aoe.1	+	3	514	c.460delG	c.(460-462)GGGfs	p.G154fs	APOBEC3D_uc011aod.1_Frame_Shift_Del_p.G154fs|APOBEC3D_uc011aof.1_Intron|APOBEC3D_uc003awu.3_Intron|APOBEC3D_uc003awt.3_Frame_Shift_Del_p.G154fs|APOBEC3D_uc010gxu.2_Intron	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	154					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					GCATAAGGCAGGGGCCCGTGT	0.597			NA											11	53	---	---	---	---	NA	NA	NA	NA	NA
IL4	3565	broad.mit.edu	37	5	132015566	132015566	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chr5:132015566delG	uc003kxk.1	+	3	714	c.344delG	c.(343-345)TGGfs	p.W115fs	IL4_uc003kxl.1_Frame_Shift_Del_p.W99fs	NM_000589	NP_000580	P05112	IL4_HUMAN	interleukin 4 isoform 1 precursor	115					B cell differentiation|cellular defense response|chemotaxis|cholesterol metabolic process|connective tissue growth factor biosynthetic process|negative regulation of apoptosis|negative regulation of osteoclast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of interleukin-13 production|positive regulation of isotype switching to IgE isotypes|positive regulation of isotype switching to IgG isotypes|positive regulation of MHC class II biosynthetic process|positive regulation of T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|T-helper 2 cell cytokine production	extracellular space	cytokine activity|growth factor activity|interleukin-4 receptor binding				0		all_cancers(142;2.81e-05)|all_lung(232;1.47e-05)|Lung NSC(810;2.31e-05)|all_neural(839;0.0459)|Ovarian(839;0.0481)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	GBM - Glioblastoma multiforme(465;0.00245)		AGGAACCTCTGGGGCCTGGCG	0.602			NA											8	45	---	---	---	---	NA	NA	NA	NA	NA
CDX4	1046	broad.mit.edu	37	X	72667267	72667267	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7546-01A-11D-2036-08	TCGA-97-7546-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	0e867b98-7689-4cde-ac39-95561719484b	8ac57855-42a3-4a1c-bf03-c7733fe5cfe5	g.chrX:72667267delC	uc011mqk.1	+	1	178	c.178delC	c.(178-180)CCCfs	p.P60fs		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	60						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					TCCTCATATGCCCAGCATGGA	0.617			NA											18	36	---	---	---	---	NA	NA	NA	NA	NA
