Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DNM1P47	0	broad.mit.edu	37	15	102296140	102296140	+	RNA	SNP	C	C	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr15:102296140C>T	ENST00000561463.1	+	0	4186																											GTCCAACCTGCACTCGCGTGG	0.602000													3	13					0	0	1	0	0
USP15	9958	broad.mit.edu	37	12	62785104	62785104	+	Nonsense_Mutation	SNP	C	C	T	rs149953550		TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr12:62785104C>T	ENST00000280377.5	+	16	2186	c.2128C>T	c.(2128-2130)Cga>Tga	p.R710*	USP15_ENST00000393654.3_Nonsense_Mutation_p.R685*|USP15_ENST00000353364.3_Nonsense_Mutation_p.R681*	NM_001252078.1	NP_001239007.1	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	710					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(5)|large_intestine(8)|lung(15)|ovary(2)|prostate(2)|upper_aerodigestive_tract(1)	37			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		ACACAAAAAACGATTGTTTAC	0.373000													20	32					0	0	1	0	0
CUL1	8454	broad.mit.edu	37	7	148427298	148427298	+	Missense_Mutation	SNP	C	C	G			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr7:148427298C>G	ENST00000325222.4	+	2	363	c.84C>G	c.(82-84)atC>atG	p.I28M	CUL1_ENST00000602748.1_Missense_Mutation_p.I28M|CUL1_ENST00000409469.1_Missense_Mutation_p.I28M	NM_003592.2	NP_003583.2	Q13616	CUL1_HUMAN	cullin 1	28					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			breast(2)|central_nervous_system(2)|endometrium(1)|kidney(5)|large_intestine(10)|liver(2)|lung(10)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	40	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			GAGCCGGCATCCAGCAGGTGT	0.547000													6	90					0	0	1	0	0
SPATA31D1	389763	broad.mit.edu	37	9	84608005	84608005	+	Nonsense_Mutation	SNP	C	C	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr9:84608005C>T	ENST00000344803.2	+	4	2667	c.2620C>T	c.(2620-2622)Cga>Tga	p.R874*		NM_001001670.2	NP_001001670.1			SPATA31 subfamily D, member 1																		AATTAAACATCGAAATCTGGT	0.438000													11	40					0	0	1	0	0
IGHA2	0	broad.mit.edu	37	14	106054006	106054006	+	RNA	SNP	G	G	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr14:106054006G>A	ENST00000390539.2	-	0	512																											CACTGGACACGCTGTAGCAGC	0.622000													6	20					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29625934	29625934	+	Missense_Mutation	SNP	C	C	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr20:29625934C>T	ENST00000278882.3	+	5	558	c.178C>T	c.(178-180)Cat>Tat	p.H60Y	FRG1B_ENST00000439954.2_Missense_Mutation_p.H65Y|FRG1B_ENST00000358464.4_Missense_Mutation_p.H60Y																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ACTTGTTGGGCATTCAGATGC	0.338000													5	62					0	0	1	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220346011	220346011	+	Missense_Mutation	SNP	T	T	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr1:220346011T>A	ENST00000358951.2	-	22	2500	c.2384A>T	c.(2383-2385)cAt>cTt	p.H795L		NM_012414.3	NP_036546.2	Q9H2M9	RBGPR_HUMAN	RAB3 GTPase activating protein subunit 2 (non-catalytic)	795					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			breast(1)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(8)|lung(13)|ovary(1)|pancreas(1)|prostate(4)|skin(1)|urinary_tract(1)	39				GBM - Glioblastoma multiforme(131;0.0443)		CAGCATGGTATGAAGACAGCA	0.383000													5	30					0	0	1	0	0
APBA1	320	broad.mit.edu	37	9	72056012	72056012	+	Missense_Mutation	SNP	C	C	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr9:72056012C>T	ENST00000265381.4	-	11	2423	c.2201G>A	c.(2200-2202)cGa>cAa	p.R734Q		NM_001163.3	NP_001154.2	Q02410	APBA1_HUMAN	amyloid beta (A4) precursor protein-binding, family A, member 1	734	PDZ 1.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				endometrium(4)|kidney(2)|large_intestine(12)|lung(13)|prostate(3)|skin(3)	37						CAGCTTGACTCGGGACTGATT	0.473000													23	43					0	0	1	0	0
PSG2	5670	broad.mit.edu	37	19	43575927	43575927	+	Missense_Mutation	SNP	C	C	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr19:43575927C>T	ENST00000406487.1	-	4	987	c.889G>A	c.(889-891)Ggg>Agg	p.G297R		NM_031246.3	NP_112536.2	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	297	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region				central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(5)|lung(24)|ovary(1)|pancreas(2)|prostate(6)|stomach(2)|urinary_tract(2)	49		Prostate(69;0.00682)				ACATAGAGCCCGCTATGCTTT	0.468000													4	203					0	0	1	0	0
KDM6B	23135	broad.mit.edu	37	17	7752181	7752181	+	Missense_Mutation	SNP	G	G	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr17:7752181G>A	ENST00000254846.5	+	11	2964	c.2575G>A	c.(2575-2577)Ggc>Agc	p.G859S	KDM6B_ENST00000448097.2_Missense_Mutation_p.G859S	NM_001080424.1	NP_001073893.1	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	859	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(3)|lung(18)|ovary(1)|pancreas(1)|skin(5)	37						TAGCGCCCAGGGCTCCCCACA	0.721000													20	38					0	0	1	0	0
CYP11B2	1585	broad.mit.edu	37	8	143994109	143994109	+	Missense_Mutation	SNP	C	C	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr8:143994109C>T	ENST00000323110.2	-	8	1237	c.1235G>A	c.(1234-1236)cGc>cAc	p.R412H		NM_000498.3	NP_000489.3	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B, polypeptide 2	412					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity			cervix(1)|endometrium(2)|kidney(3)|large_intestine(5)|lung(22)|ovary(3)|upper_aerodigestive_tract(3)	39	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GGCGGCATTGCGACCCAGCGA	0.602000									Familial Hyperaldosteronism type I				3	51					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157805895	157805895	+	Missense_Mutation	SNP	G	G	A	rs145458344		TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr1:157805895G>A	ENST00000368174.4	-	3	202	c.106C>T	c.(106-108)Cgg>Tgg	p.R36W	CD5L_ENST00000484609.1_5'UTR	NM_005894.2	NP_005885.1	O43866	CD5L_HUMAN	CD5 molecule-like	36	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity	p.R36W(1)		NS(1)|breast(4)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(9)|lung(25)|ovary(1)|prostate(1)|stomach(1)|urinary_tract(1)	52	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ACCTCCACCCGCCCTTCACAG	0.632000													25	47					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41333285	41333285	+	Missense_Mutation	SNP	C	C	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr12:41333285C>A	ENST00000551295.2	+	12	1494	c.1377C>A	c.(1375-1377)agC>agA	p.S459R	CNTN1_ENST00000347616.1_Missense_Mutation_p.S459R|CNTN1_ENST00000547702.1_Missense_Mutation_p.S459R|CNTN1_ENST00000547849.1_Missense_Mutation_p.S459R|CNTN1_ENST00000360099.3_Missense_Mutation_p.S459R|CNTN1_ENST00000348761.2_Missense_Mutation_p.S448R	NM_001843.3	NP_001834.2	Q12860	CNTN1_HUMAN	contactin 1	459	Ig-like C2-type 5.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(21)|lung(49)|ovary(3)|prostate(2)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(2)	90	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TCAATAGCAGCAGGTCAGTGC	0.353000													11	12					2.80697e-09	2.89203e-09	1	1	0
CRHR1	1394	broad.mit.edu	37	17	43912060	43912060	+	Missense_Mutation	SNP	G	G	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr17:43912060G>A	ENST00000314537.5	+	13	1403	c.1178G>A	c.(1177-1179)cGt>cAt	p.R393H	CRHR1_ENST00000352855.5_Missense_Mutation_p.R353H|CRHR1_ENST00000293493.7_Missense_Mutation_p.R218H|CRHR1_ENST00000577353.1_Missense_Mutation_p.R379H|CRHR1_ENST00000398285.3_Missense_Mutation_p.R422H|CRHR1_ENST00000339069.5_Missense_Mutation_p.V247M	NM_001145147.1|NM_001145148.1|NM_004382.4	NP_001138619.1|NP_001138620.1|NP_004373.2	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	422					female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			NS(1)|breast(1)|endometrium(1)|large_intestine(4)|lung(15)|pancreas(1)|skin(1)	24	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		CGAGTGGCCCGTGCCATGTCC	0.627000													16	36					0	0	1	0	0
TPX2	22974	broad.mit.edu	37	20	30366768	30366768	+	Missense_Mutation	SNP	G	G	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr20:30366768G>T	ENST00000340513.4	+	10	1563	c.1035G>T	c.(1033-1035)agG>agT	p.R345S	TPX2_ENST00000300403.6_Missense_Mutation_p.R345S			Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated	345					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			cervix(1)|endometrium(1)|kidney(2)|large_intestine(9)|lung(9)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	28			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			ATCATTTGAGGAGCAAGAAGG	0.398000													9	56					0.335167	0.335167	1	1	0
ABCA12	26154	broad.mit.edu	37	2	215847076	215847076	+	Missense_Mutation	SNP	G	G	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr2:215847076G>A	ENST00000272895.7	-	30	4633	c.4414C>T	c.(4414-4416)Cgt>Tgt	p.R1472C	ABCA12_ENST00000389661.4_Missense_Mutation_p.R1154C	NM_173076.2	NP_775099.2	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A (ABC1), member 12	1472	ABC transporter 1.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			NS(3)|breast(5)|central_nervous_system(2)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(45)|lung(44)|ovary(8)|pancreas(2)|prostate(4)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	139		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTCTTATGACGATGGCTATAT	0.343000													23	41					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29633900	29633900	+	Missense_Mutation	SNP	A	A	G	rs60081496	by1000genomes	TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr20:29633900A>G	ENST00000278882.3	+	9	919	c.539A>G	c.(538-540)gAa>gGa	p.E180G	FRG1B_ENST00000358464.4_Missense_Mutation_p.E180G														p.E180G(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						TAAACAAGAGAACCAAATTGA	0.264000													4	79					0	0	1	0	0
SDC2	6383	broad.mit.edu	37	8	97621721	97621721	+	Missense_Mutation	SNP	G	G	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr8:97621721G>T	ENST00000302190.4	+	5	1472	c.551G>T	c.(550-552)cGc>cTc	p.R184L	SDC2_ENST00000519914.1_Missense_Mutation_p.R155L|SDC2_ENST00000518385.1_Missense_Mutation_p.R148L|SDC2_ENST00000522911.1_Missense_Mutation_p.R155L	NM_002998.3	NP_002989.2	P34741	SDC2_HUMAN	syndecan 2	184						integral to plasma membrane	cytoskeletal protein binding|PDZ domain binding			breast(1)|cervix(1)|large_intestine(5)|lung(4)|ovary(2)|prostate(1)|stomach(2)	16	Breast(36;3.41e-05)				Sargramostim(DB00020)	CTTGGAGAACGCAAACCATCC	0.413000													31	41					2.08457e-15	2.21485e-15	1	1	0
HS6ST1	9394	broad.mit.edu	37	2	129026419	129026419	+	Nonsense_Mutation	SNP	G	G	A	rs139541363	by1000genomes	TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr2:129026419G>A	ENST00000259241.6	-	2	566	c.553C>T	c.(553-555)Cga>Tga	p.R185*		NM_004807.2	NP_004798.3	O60243	H6ST1_HUMAN	heparan sulfate 6-O-sulfotransferase 1	185	3'-phosphate binding (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	integral to plasma membrane	sulfotransferase activity	p.R185*(2)		endometrium(3)|liver(1)|lung(7)|pancreas(1)|prostate(2)|skin(1)	15	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.117)		ACGGGGTCTCGTAGCAGGGTG	0.627000													3	40					0	0	1	0	0
TSHZ1	10194	broad.mit.edu	37	18	72998961	72998961	+	Nonsense_Mutation	SNP	C	C	G			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr18:72998961C>G	ENST00000322038.5	+	2	2048	c.1464C>G	c.(1462-1464)taC>taG	p.Y488*	TSHZ1_ENST00000580243.1_Nonsense_Mutation_p.Y533*	NM_005786.5	NP_005777.3	Q6ZSZ6	TSH1_HUMAN	teashirt zinc finger homeobox 1	533						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(2)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(11)|liver(1)|lung(14)|ovary(1)|skin(6)|upper_aerodigestive_tract(2)	42		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		GCACCCTGTACCCGTACCTGC	0.587000													29	54					0	0	1	0	0
TEX14	56155	broad.mit.edu	37	17	56699053	56699053	+	Missense_Mutation	SNP	C	C	T			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr17:56699053C>T	ENST00000389934.3	-	5	629	c.512G>A	c.(511-513)cGg>cAg	p.R171Q	TEX14_ENST00000240361.8_Missense_Mutation_p.R171Q|TEX14_ENST00000349033.5_Missense_Mutation_p.R171Q	NM_001201457.1|NM_198393.3	NP_001188386.1|NP_938207.2	Q8IWB6	TEX14_HUMAN	testis expressed 14	171						cytoplasm	ATP binding|protein kinase activity			breast(6)|endometrium(5)|kidney(3)|large_intestine(22)|liver(1)|lung(24)|ovary(4)|pancreas(1)|prostate(1)|skin(5)|stomach(5)|upper_aerodigestive_tract(1)|urinary_tract(3)	81	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GTAGACAAGCCGCTGCGGGGA	0.587000													12	28					0	0	1	0	0
OGT	8473	broad.mit.edu	37	X	70767856	70767856	+	Missense_Mutation	SNP	A	A	G			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chrX:70767856A>G	ENST00000373719.3	+	5	848	c.631A>G	c.(631-633)Att>Gtt	p.I211V	OGT_ENST00000373701.3_Missense_Mutation_p.I201V	NM_181672.2|NM_181673.2	NP_858058.1|NP_858059.1	O15294	OGT1_HUMAN	O-linked N-acetylglucosamine (GlcNAc) transferase	211					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			breast(6)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(5)|liver(3)|lung(9)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	43	Renal(35;0.156)					TTGGCTTGCAATTCATCACTT	0.353000													47	17					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546415	11546415	+	Silent	SNP	T	T	C			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr12:11546415T>C	ENST00000389362.4	-	3	632	c.597A>G	c.(595-597)ggA>ggG	p.G199G	PRB1_ENST00000546254.1_Intron	NM_006248.3	NP_006239.3			proline-rich protein BstNI subfamily 2											NS(1)|breast(1)|endometrium(2)|kidney(3)|large_intestine(3)|lung(14)|pancreas(1)|prostate(5)|skin(4)|stomach(2)|urinary_tract(1)	37		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTGTGGCTTTCCTGGAGGAG	0.597000													54	120					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24392434	24392434	+	Missense_Mutation	SNP	G	G	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr1:24392434G>A	ENST00000330966.7	-	29	3652	c.3490C>T	c.(3490-3492)Cca>Tca	p.P1164S	MYOM3_ENST00000338909.5_Missense_Mutation_p.P54S|MYOM3_ENST00000374434.3_Missense_Mutation_p.P1161S|RP11-293P20.2_ENST00000439239.2_RNA|MYOM3_ENST00000329601.7_Missense_Mutation_p.P1163S			Q5VTT5	MYOM3_HUMAN	myomesin 3	1161	Ig-like C2-type 3.									NS(2)|breast(2)|central_nervous_system(1)|endometrium(5)|kidney(6)|large_intestine(3)|lung(40)|ovary(2)|prostate(1)|skin(4)|urinary_tract(2)	68		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TGACCATCTGGCATCTCTGCC	0.542000													37	98					0	0	1	0	0
BMP1	649	broad.mit.edu	37	8	22067192	22067192	+	Missense_Mutation	SNP	G	G	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr8:22067192G>A	ENST00000306385.5	+	19	3480	c.2810G>A	c.(2809-2811)cGc>cAc	p.R937H	BMP1_ENST00000354870.5_3'UTR	NM_006129.4	NP_006120.1	P13497	BMP1_HUMAN	bone morphogenetic protein 1	937	CUB 5.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			breast(1)|endometrium(7)|kidney(2)|large_intestine(7)|lung(7)|ovary(2)|prostate(1)|skin(3)	30				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		AGGCTGGGGCGCTACTGTGGC	0.657000													40	53					0	0	1	0	0
ENC1	8507	broad.mit.edu	37	5	73931637	73931637	+	Missense_Mutation	SNP	C	C	T	rs61758147		TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr5:73931637C>T	ENST00000302351.4	-	2	1804	c.674G>A	c.(673-675)cGc>cAc	p.R225H	ENC1_ENST00000537006.1_Missense_Mutation_p.R225H|ENC1_ENST00000510316.1_Missense_Mutation_p.R152H	NM_003633.3	NP_003624.1	O14682	ENC1_HUMAN	ectodermal-neural cortex 1 (with BTB domain)	225					nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding	p.R225H(1)		breast(1)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(4)|lung(4)|ovary(1)|pancreas(1)|prostate(1)|skin(1)	20		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		GTAGCAATAGCGCTTCTTCAG	0.493000													13	40					0	0	1	0	0
PSAT1	29968	broad.mit.edu	37	9	80923397	80923397	+	Missense_Mutation	SNP	G	G	A			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr9:80923397G>A	ENST00000376588.3	+	6	706	c.638G>A	c.(637-639)cGt>cAt	p.R213H	PSAT1_ENST00000347159.2_Missense_Mutation_p.R213H	NM_058179.2	NP_478059.1	Q9Y617	SERC_HUMAN	phosphoserine aminotransferase 1	213					L-serine biosynthetic process|pyridoxine biosynthetic process		O-phospho-L-serine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			breast(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(9)|ovary(1)|urinary_tract(1)	20					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)	GTGATTGTCCGTGATGACCTG	0.522000													21	40					0	0	1	0	0
RP11-649A16.1	0	broad.mit.edu	37	3	146995077	146995077	+	RNA	DEL	A	A	-			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr3:146995077delA	ENST00000473299.1	-	0	132																											TCTGGACTGtaaaaaaaaaaa	0.294													3	3	---	---	---	---					
RP5-921G16.1	0	broad.mit.edu	37	7	123757438	123757438	+	RNA	DEL	T	T	-			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr7:123757438delT	ENST00000484322.1	+	0	168																											ccaataattattttagagtga	0.502													2	4	---	---	---	---					
AP003900.6	0	broad.mit.edu	37	21	11180761	11180762	+	RNA	INS	-	-	T	rs150288525		TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chr21:11180761_11180762insT	ENST00000603265.1	+	0	231																											aaACTAACTTCTTTTTTTTTTT	0.347													5	7	---	---	---	---					
AMMECR1	9949	broad.mit.edu	37	X	109561207	109561209	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-P8-A6RX-01A-11D-A35D-08	TCGA-P8-A6RX-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4c7d3248-95e1-4538-bfb3-f8c30c327fe0	fb464a7f-6991-43d5-b642-def477d6ca52	g.chrX:109561207_109561209delGGA	ENST00000262844.5	-	1	258_260	c.91_93delTCC	c.(91-93)del	p.S31del	AMMECR1_ENST00000372059.2_In_Frame_Del_p.S31del|AMMECR1_ENST00000372057.1_Intron	NM_015365.2	NP_056180.1	Q9Y4X0	AMER1_HUMAN	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	31	Gly/Ser-rich.									large_intestine(1)|lung(4)|ovary(1)|stomach(1)	7						CGCTGCAGTGGGAGGAGGAGGAG	0.680													3	3	---	---	---	---					
