Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EPHB2	2048	broad.mit.edu	37	1	23235625	23235625	+	Silent	SNP	C	C	T			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr1:23235625C>T	ENST00000400191.3	+	13	2481	c.2463C>T	c.(2461-2463)tcC>tcT	p.S821S	EPHB2_ENST00000374627.1_Silent_p.S816S|EPHB2_ENST00000374632.3_Silent_p.S822S|EPHB2_ENST00000374630.3_Silent_p.S821S	NM_004442.6|NM_017449.3	NP_004433.2|NP_059145.2	P29323	EPHB2_HUMAN	EPH receptor B2	821	Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			NS(1)|breast(1)|endometrium(6)|kidney(2)|large_intestine(10)|lung(17)|ovary(4)|pancreas(2)|prostate(3)|skin(8)|stomach(1)|urinary_tract(1)	56		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		AGGTGATGTCCTATGGGGAGC	0.597000													13	37					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128134119	128134119	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr6:128134119C>T	ENST00000368250.1	-	5	1928	c.1430G>A	c.(1429-1431)cGc>cAc	p.R477H	THEMIS_ENST00000537166.1_Missense_Mutation_p.R521H|THEMIS_ENST00000543064.1_Missense_Mutation_p.R556H|THEMIS_ENST00000368248.2_Missense_Mutation_p.R556H			Q8N1K5	THMS1_HUMAN	thymocyte selection associated	556	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				breast(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(10)|liver(1)|lung(28)|ovary(2)|pancreas(1)|prostate(1)|skin(4)|stomach(1)|urinary_tract(3)	60						TTTCGGAGGGCGAGGTGGGGG	0.493000													4	106					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16945409	16945409	+	RNA	SNP	T	T	A	rs13566		TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr1:16945409T>A	ENST00000412962.1	-	0	2110																											GCGGGATAGCTCGGTGGAGAG	0.612000													3	33					0	0	1	0	0
SLC33A1	9197	broad.mit.edu	37	3	155571395	155571395	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr3:155571395G>A	ENST00000392845.2	-	1	772	c.392C>T	c.(391-393)gCg>gTg	p.A131V	SLC33A1_ENST00000359479.3_Missense_Mutation_p.A131V	NM_004733.3	NP_004724.1	O00400	ACATN_HUMAN	solute carrier family 33 (acetyl-CoA transporter), member 1	131					cell death|transmembrane transport	endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane|membrane fraction	acetyl-CoA transporter activity			endometrium(1)|kidney(3)|large_intestine(6)|lung(7)|ovary(2)|pancreas(1)|prostate(1)|urinary_tract(1)	22			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AACGTAGACCGCATCAACCAA	0.438000													3	36					0	0	1	0	0
TPCN1	53373	broad.mit.edu	37	12	113714812	113714812	+	Missense_Mutation	SNP	A	A	G			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr12:113714812A>G	ENST00000550785.1	+	12	1416	c.1247A>G	c.(1246-1248)cAt>cGt	p.H416R	TPCN1_ENST00000541517.1_Missense_Mutation_p.H416R|TPCN1_ENST00000392569.4_Missense_Mutation_p.H276R|TPCN1_ENST00000335509.6_Missense_Mutation_p.H344R	NM_001143819.1	NP_001137291.1	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1	344						endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(16)|ovary(2)|prostate(3)|skin(3)|urinary_tract(1)	40						GCTATCCAGCATGCCTACCGC	0.567000													63	159					0	0	1	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60241050	60241050	+	Translation_Start_Site	SNP	G	G	A			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr5:60241050G>A	ENST00000296597.5	+	0	95				NDUFAF2_ENST00000511107.1_De_novo_Start_OutOfFrame	NM_174889.4	NP_777549.1	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) complex I, assembly factor 2							membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(1)|ovary(1)	6		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				TGCGGGTCCCGCTGCTGGCAG	0.632000													3	19					0	0	1	0	0
LINC00969	0	broad.mit.edu	37	3	195400799	195400799	+	RNA	SNP	G	G	A	rs7635172	by1000genomes	TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr3:195400799G>A	ENST00000445430.1	+	0	1395																											CAAACTCGCTGTTGGACCTGG	0.597000													4	9					0	0	1	0	0
MMP19	4327	broad.mit.edu	37	12	56230872	56230872	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr12:56230872C>T	ENST00000394182.1	-	4	616	c.617G>A	c.(616-618)gGc>gAc	p.G206D	MMP19_ENST00000548629.1_Missense_Mutation_p.G469D|MMP19_ENST00000409200.3_3'UTR|MMP19_ENST00000322569.4_Missense_Mutation_p.G492D			Q99542	MMP19_HUMAN	matrix metallopeptidase 19	492					angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			endometrium(1)|kidney(2)|large_intestine(7)|lung(12)|ovary(2)|skin(2)	26						CAAGGTTATGCCCGTACCTGA	0.507000													4	156					0	0	1	0	0
GULP1	51454	broad.mit.edu	37	2	189342446	189342446	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr2:189342446G>A	ENST00000409580.1	+	4	731	c.17G>A	c.(16-18)aGc>aAc	p.S6N	GULP1_ENST00000409637.3_Missense_Mutation_p.S6N|GULP1_ENST00000410051.1_Missense_Mutation_p.S6N|GULP1_ENST00000409609.1_Missense_Mutation_p.S6N|GULP1_ENST00000409843.1_Missense_Mutation_p.S6N|GULP1_ENST00000479019.1_3'UTR|GULP1_ENST00000409805.1_Missense_Mutation_p.S6N|GULP1_ENST00000409830.1_Missense_Mutation_p.S6N|GULP1_ENST00000359135.3_Missense_Mutation_p.S6N			Q9UBP9	GULP1_HUMAN	GULP, engulfment adaptor PTB domain containing 1	6					apoptosis|lipid transport|phagocytosis, engulfment	cytoplasm|intracellular membrane-bounded organelle	signal transducer activity			endometrium(3)|large_intestine(2)|lung(5)|ovary(1)|skin(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0423)|Epithelial(96;0.158)			CGTGCTTTTAGCAGGAAGAAA	0.348000													4	74					0	0	1	0	0
ALG1L13P	0	broad.mit.edu	37	8	8095990	8095990	+	RNA	SNP	C	C	G			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr8:8095990C>G	ENST00000523017.1	-	0	608																											CCAGGAGCCCCGAGACCTGCA	0.647000													2	1					0	0	1	0	0
AQP12A	375318	broad.mit.edu	37	2	241631584	241631584	+	Missense_Mutation	SNP	G	G	T			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr2:241631584G>T	ENST00000429564.1	+	2	316	c.253G>T	c.(253-255)Gtc>Ttc	p.V85F	AQP12A_ENST00000337801.4_Missense_Mutation_p.V73F			Q8IXF9	AQ12A_HUMAN	aquaporin 12A	73						integral to membrane	transporter activity			endometrium(2)|kidney(3)|large_intestine(2)|lung(7)	14		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		GGCGCACGGGGTCACCTTGGA	0.667000													4	66					0.00307968	0.00307968	1	1	0
SALL1	6299	broad.mit.edu	37	16	51173041	51173041	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr16:51173041C>T	ENST00000440970.1	-	2	3232	c.2801G>A	c.(2800-2802)tGc>tAc	p.C934Y	SALL1_ENST00000566102.1_Intron|SALL1_ENST00000251020.4_Missense_Mutation_p.C1031Y|SALL1_ENST00000541611.1_Intron	NM_001127892.1	NP_001121364.1	Q9NSC2	SALL1_HUMAN	spalt-like transcription factor 1	1031					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(4)|breast(2)|central_nervous_system(2)|endometrium(3)|kidney(5)|large_intestine(25)|lung(61)|ovary(3)|prostate(6)|skin(12)|upper_aerodigestive_tract(3)	126		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GCAAACTGTGCAAATAAATGG	0.423000													8	36					0	0	1	0	0
CDH20	28316	broad.mit.edu	37	18	59221533	59221533	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr18:59221533G>A	ENST00000262717.4	+	12	2409	c.2011G>A	c.(2011-2013)Ggc>Agc	p.G671S	CDH20_ENST00000536675.2_Missense_Mutation_p.G671S|CDH20_ENST00000538374.1_Missense_Mutation_p.G671S			Q9HBT6	CAD20_HUMAN	cadherin 20, type 2	671					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(12)|lung(33)|ovary(1)|pancreas(1)|skin(3)	61		Colorectal(73;0.186)				CGAGGGCGGCGGCGAGGAGGA	0.652000													29	96					0	0	1	0	0
OR10A5	144124	broad.mit.edu	37	11	6867636	6867636	+	Silent	SNP	G	G	A			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr11:6867636G>A	ENST00000299454.4	+	1	754	c.723G>A	c.(721-723)acG>acA	p.T241T	OR10A5_ENST00000379831.2_Silent_p.T245T			Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A, member 5	241					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(1)|kidney(2)|large_intestine(1)|lung(12)|ovary(1)|skin(2)|urinary_tract(2)	21		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCTTCTCTACGTGCTCCTCAC	0.443000													4	107					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114270000	114270000	+	Silent	SNP	G	G	A			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr7:114270000G>A	ENST00000393500.3	+	11	1132	c.312G>A	c.(310-312)caG>caA	p.Q104Q	FOXP2_ENST00000350908.4_Silent_p.Q179Q|AC020606.1_ENST00000580664.1_RNA|FOXP2_ENST00000390668.3_Silent_p.Q203Q|FOXP2_ENST00000393498.2_Silent_p.Q159Q|FOXP2_ENST00000408937.3_Silent_p.Q204Q|FOXP2_ENST00000360232.4_Silent_p.Q179Q|FOXP2_ENST00000378237.3_Silent_p.Q179Q|FOXP2_ENST00000393494.2_Silent_p.Q179Q|FOXP2_ENST00000393489.3_Silent_p.Q87Q|FOXP2_ENST00000403559.4_Silent_p.Q196Q|FOXP2_ENST00000393491.3_Silent_p.Q87Q			O15409	FOXP2_HUMAN	forkhead box P2	179	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding	p.Q204Q(1)		breast(3)|endometrium(7)|kidney(4)|large_intestine(7)|lung(22)|ovary(4)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	52						agcaacaacagcagcagcagc	0.498000													4	53					0	0	1	0	0
STAG3L2	0	broad.mit.edu	37	7	74300557	74300564	+	RNA	DEL	AGAGCTCC	AGAGCTCC	-			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr7:74300557_74300564delAGAGCTCC	ENST00000423186.1	-	0	573_580							P0CL84	ST3L2_HUMAN								nucleus	binding	p.E82fs*32(2)		breast(1)|central_nervous_system(1)|large_intestine(1)|lung(1)|pancreas(1)	5						CGGCCAGTGAAGAGCTCCAGGCGTGCGG	0.572													3	5	---	---	---	---					
WNK2	65268	broad.mit.edu	37	9	96002081	96002081	+	Frame_Shift_Del	DEL	G	G	-			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr9:96002081delG	ENST00000297954.4	+	6	1365	c.1365delG	c.(1363-1365)gafs	p.E455fs	WNK2_ENST00000427277.2_Frame_Shift_Del_p.E67fs|WNK2_ENST00000395475.2_Frame_Shift_Del_p.E441fs|WNK2_ENST00000395477.2_Frame_Shift_Del_p.E455fs|WNK2_ENST00000349097.3_Frame_Shift_Del_p.E67fs|WNK2_ENST00000356055.3_5'UTR			Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	455					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			breast(2)|central_nervous_system(1)|endometrium(11)|kidney(4)|large_intestine(5)|lung(17)|ovary(2)|prostate(3)|skin(4)|stomach(3)|upper_aerodigestive_tract(2)	54						TCTTCGCAGAGGACACAGGCG	0.647													2	4	---	---	---	---					
RP11-783K16.14	0	broad.mit.edu	37	11	63997583	63997584	+	RNA	INS	-	-	C			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr11:63997583_63997584insC	ENST00000534988.1	-	0	99																											AAAAAAAAAAACCCGCCCAGCC	0.530													6	1	---	---	---	---					
PTPRCAP	5790	broad.mit.edu	37	11	67203697	67203699	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr11:67203697_67203699delAGC	ENST00000326294.3	-	2	573_575	c.126_128delGCT	c.(124-129)ctc>ct	p.LL44del		NM_005608.2	NP_005599.1	Q14761	PTCA_HUMAN	protein tyrosine phosphatase, receptor type, C-associated protein	44					defense response	integral to membrane|plasma membrane				skin(1)|upper_aerodigestive_tract(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			cagcagtaggagcagcagcagca	0.714													2	4	---	---	---	---					
FBXL3	26224	broad.mit.edu	37	13	77581683	77581683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr13:77581683delA	ENST00000355619.5	-	5	1208	c.884delT	c.(883-885)tafs	p.L295fs	FBXL3_ENST00000477982.1_Intron	NM_012158.2	NP_036290.1	Q9UKT7	FBXL3_HUMAN	F-box and leucine-rich repeat protein 3	295					regulation of circadian rhythm|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity	p.L295fs*3(1)		breast(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(5)|urinary_tract(1)	16		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.218)		GBM - Glioblastoma multiforme(99;0.0521)		TTCTTCATATAAAAAAAAATA	0.418													7	61	---	---	---	---					
LGALS16	148003	broad.mit.edu	37	19	40151057	40151057	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QR-A6GZ-01A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ba3bfaaf-b42e-4279-a234-da6b29fffb5f	dc831897-5afc-4187-860f-4ac7b570871d	g.chr19:40151057delT	ENST00000392051.3	+	4	394	c.326delT	c.(325-327)atfs	p.I109fs		NM_001190441.1	NP_001177370.1	A8MUM7	A8MUM7_HUMAN	lectin, galactoside-binding, soluble, 16	109							sugar binding										GGTGAATACATTTATGCCTTT	0.433													2	4	---	---	---	---					
