Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACSL6	23305	broad.mit.edu	37	5	131308989	131308989	+	Silent	SNP	G	G	C			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr5:131308989G>C	ENST00000379264.2	-	12	1281	c.1173C>G	c.(1171-1173)gtC>gtG	p.V391V	ACSL6_ENST00000379244.1_Silent_p.V366V|ACSL6_ENST00000357096.1_Silent_p.V291V|ACSL6_ENST00000379249.3_Silent_p.V366V|ACSL6_ENST00000379255.1_Silent_p.V291V|ACSL6_ENST00000543479.1_Silent_p.V366V|ACSL6_ENST00000431707.1_Silent_p.V346V|ACSL6_ENST00000544770.1_Silent_p.V275V|ACSL6_ENST00000379240.1_Silent_p.V366V|ACSL6_ENST00000379246.1_Silent_p.V377V|ACSL6_ENST00000296869.4_Silent_p.V391V|ACSL6_ENST00000379272.2_Silent_p.V381V	NM_001009185.2	NP_001009185.1	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	366					fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			NS(1)|breast(1)|endometrium(2)|kidney(4)|large_intestine(8)|lung(12)|ovary(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(1)	35		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCAGTCGTGGGACCACAGGGA	0.552000													4	63					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11047521	11047521	+	RNA	SNP	C	C	T			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr21:11047521C>T	ENST00000470054.1	-	0	733									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTCATAATTCGTTGAAGACA	0.348000													5	382					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16945409	16945409	+	RNA	SNP	T	T	A	rs13566		TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr1:16945409T>A	ENST00000412962.1	-	0	2110																											GCGGGATAGCTCGGTGGAGAG	0.612000													4	46					0	0	1	0	0
LINC00969	0	broad.mit.edu	37	3	195400799	195400799	+	RNA	SNP	G	G	A	rs7635172	by1000genomes	TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr3:195400799G>A	ENST00000445430.1	+	0	1395																											CAAACTCGCTGTTGGACCTGG	0.597000													4	5					0	0	1	0	0
HSD17B7P2	0	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765		TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr10:38654432A>G	ENST00000494540.1	+	0	599					NR_003086.1																						TCATCTCGCAATGCAAGGAAA	0.453000													4	39					0	0	1	0	0
NUTM1	256646	broad.mit.edu	37	15	34648741	34648741	+	Silent	SNP	G	G	A			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr15:34648741G>A	ENST00000537011.1	+	8	2914	c.2532G>A	c.(2530-2532)ttG>ttA	p.L844L	NUTM1_ENST00000333756.4_Silent_p.L816L|NUTM1_ENST00000438749.3_Silent_p.L834L					NUT midline carcinoma, family member 1																		GCCCACCCTTGAGGTCCAAAG	0.522000													21	32					0	0	1	0	0
ARHGEF40	55701	broad.mit.edu	37	14	21552977	21552977	+	Silent	SNP	G	G	A			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr14:21552977G>A	ENST00000298694.4	+	18	3982	c.3855G>A	c.(3853-3855)aaG>aaA	p.K1285K	ARHGEF40_ENST00000298693.3_Silent_p.K1285K			Q8TER5	ARH40_HUMAN	Rho guanine nucleotide exchange factor (GEF) 40	1285	PH.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(4)|ovary(3)|upper_aerodigestive_tract(2)	9						GTGGCCGAAAGAAGTGCCTTC	0.527000													52	90					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169511063	169511063	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr1:169511063T>C	ENST00000367796.3	-	13	3481	c.3280A>G	c.(3280-3282)Atg>Gtg	p.M1094V	F5_ENST00000367797.3_Missense_Mutation_p.M1089V			P12259	FA5_HUMAN	coagulation factor V (proaccelerin, labile factor)	1089	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			NS(1)|breast(4)|central_nervous_system(4)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(24)|lung(55)|ovary(3)|prostate(4)|skin(5)|stomach(1)|upper_aerodigestive_tract(7)|urinary_tract(1)	128	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CCAAAATCCATAGAGGGCAAT	0.438000													9	118					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41337803	41337803	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr12:41337803C>T	ENST00000551295.2	+	14	1631	c.1514C>T	c.(1513-1515)aCg>aTg	p.T505M	CNTN1_ENST00000547702.1_Missense_Mutation_p.T505M|CNTN1_ENST00000547849.1_Missense_Mutation_p.T505M|CNTN1_ENST00000347616.1_Missense_Mutation_p.T505M|CNTN1_ENST00000348761.2_Missense_Mutation_p.T494M|CNTN1_ENST00000360099.3_Missense_Mutation_p.T505M	NM_001843.3	NP_001834.2	Q12860	CNTN1_HUMAN	contactin 1	505	Ig-like C2-type 6.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane		p.T505M(1)		central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(21)|lung(49)|ovary(3)|prostate(2)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(2)	90	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				ATAGATCCTACGCGAATTATA	0.333000													4	87					0	0	1	0	0
PPP1R10	5514	broad.mit.edu	37	6	30570123	30570123	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr6:30570123C>T	ENST00000376511.2	-	19	2855	c.2303G>A	c.(2302-2304)cGt>cAt	p.R768H		NM_002714.3	NP_002705.2	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	768	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(2)|lung(9)|ovary(2)|prostate(3)|skin(1)	25						TTCGTGGGGACGATGTCCACT	0.667000													63	79					0	0	1	0	0
TRGV3	0	broad.mit.edu	37	7	38398424	38398424	+	RNA	SNP	C	C	A			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr7:38398424C>A	ENST00000390346.2	-	0	226																											TTCTGACTGGCTGCAATGGGA	0.438000													4	67					0.00909568	0.00909568	1	1	0
FEZF2	55079	broad.mit.edu	37	3	62358227	62358229	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr3:62358227_62358229delCCT	ENST00000283268.3	-	2	609_611	c.315_317delAGG	c.(313-318)ggc>gg	p.GG115del	FEZF2_ENST00000486811.1_In_Frame_Del_p.GG115del|FEZF2_ENST00000475839.1_In_Frame_Del_p.GG115del	NM_018008.3	NP_060478.3	Q8TBJ5	FEZF2_HUMAN	FEZ family zinc finger 2	115	Gly-rich.				transcription, DNA-dependent	nucleus	zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(8)|lung(8)|skin(1)	20		Lung SC(41;0.0262)		BRCA - Breast invasive adenocarcinoma(55;0.000221)|KIRC - Kidney renal clear cell carcinoma(15;0.00834)|Kidney(15;0.00957)		gccgccgccgcctccgccgccgc	0.709													5	2	---	---	---	---					
GIPC1	10755	broad.mit.edu	37	19	14591196	14591212	+	Frame_Shift_Del	DEL	GTAGTGCCGGCAGCCCA	GTAGTGCCGGCAGCCCA	-	rs148903990	byFrequency	TCGA-QR-A6GZ-05A-11D-A35D-08	TCGA-QR-A6GZ-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1be348d1-bb8d-4bcb-9df7-f044e55c42b8	dc831897-5afc-4187-860f-4ac7b570871d	g.chr19:14591196_14591212delGTAGTGCCGGCAGCCCA	ENST00000393033.4	-	6	829_845	c.560_576delTGGGCTGCCGGCACTAC	c.(559-576)cfs	p.LGCRHY187fs	GIPC1_ENST00000393029.3_Frame_Shift_Del_p.LGCRHY90fs|GIPC1_ENST00000586027.1_Frame_Shift_Del_p.LGCRHY187fs|GIPC1_ENST00000345425.2_Frame_Shift_Del_p.LGCRHY187fs|GIPC1_ENST00000393028.1_Frame_Shift_Del_p.LGCRHY90fs|GIPC1_ENST00000591349.1_Frame_Shift_Del_p.LGCRHY90fs	NM_005716.3	NP_005707.1	O14908	GIPC1_HUMAN	GIPC PDZ domain containing family, member 1	187	PDZ.				endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding			endometrium(1)|lung(4)|upper_aerodigestive_tract(1)	6						GGGCCACCTCGTAGTGCCGGCAGCCCAGCAGGCTCTG	0.677											OREG0025316	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	52	---	---	---	---					
