Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SYNE1	23345	broad.mit.edu	37	6	152539540	152539540	+	Splice_Site	SNP	T	T	C	rs35128811		TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr6:152539540T>C	ENST00000367255.5	-	121	22646		c.e121-2		SYNE1_ENST00000423061.1_Splice_Site|SYNE1_ENST00000356820.4_Splice_Site|SYNE1_ENST00000448038.1_Splice_Site|SYNE1_ENST00000265368.4_Splice_Site|SYNE1_ENST00000341594.5_Splice_Site	NM_182961.3	NP_892006.3	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1						cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			NS(3)|biliary_tract(1)|breast(17)|central_nervous_system(21)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(4)|kidney(16)|large_intestine(138)|liver(1)|lung(190)|ovary(11)|pancreas(5)|prostate(12)|skin(20)|stomach(3)|upper_aerodigestive_tract(33)|urinary_tract(19)	524		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AACTCCAGCCTTTTTTTCCAC	0.343000										HNSCC(10;0.0054)			4	131					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151067935	151067935	+	Missense_Mutation	SNP	A	A	C			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr3:151067935A>C	ENST00000474524.1	+	15	2272	c.2234A>C	c.(2233-2235)aAg>aCg	p.K745T	MED12L_ENST00000273432.4_Missense_Mutation_p.K605T|P2RY12_ENST00000302632.3_Intron|MED12L_ENST00000491549.1_3'UTR	NM_053002.4	NP_443728.3	Q86YW9	MD12L_HUMAN	mediator complex subunit 12-like	745					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				NS(1)|breast(3)|central_nervous_system(3)|cervix(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(2)|kidney(9)|large_intestine(27)|lung(50)|ovary(6)|prostate(3)|skin(4)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	128			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CATCAGCTGAAGAAGATTACC	0.418000													4	88					0	0	1	0	0
MAML3	55534	broad.mit.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr4:140811108C>T	ENST00000509479.2	-	2	2338	c.1482G>A	c.(1480-1482)caG>caA	p.Q494Q	MAML3_ENST00000327122.5_Silent_p.Q338Q|MAML3_ENST00000398940.1_Silent_p.Q33Q	NM_018717.4	NP_061187.2	Q96JK9	MAML3_HUMAN	mastermind-like 3 (Drosophila)	494	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			breast(1)|endometrium(7)|kidney(2)|large_intestine(1)|lung(9)|ovary(1)|prostate(2)|urinary_tract(2)	25	all_hematologic(180;0.162)					gctgctgctgctgctgctgct	0.537000													4	22					0	0	1	0	0
APOA1	335	broad.mit.edu	37	11	116706628	116706628	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr11:116706628C>T	ENST00000236850.4	-	4	1065	c.700G>A	c.(700-702)Gcg>Acg	p.A234T	APOA1_ENST00000375320.1_Missense_Mutation_p.A234T|APOA1_ENST00000375329.2_Missense_Mutation_p.A212T|APOA1_ENST00000375323.1_Missense_Mutation_p.A234T|APOA1_ENST00000359492.2_Missense_Mutation_p.A234T	NM_000039.1	NP_000030.1	P02647	APOA1_HUMAN	apolipoprotein A-I	234	10 X approximate tandem repeats.				Cdc42 protein signal transduction|cholesterol efflux|cholesterol homeostasis|cholesterol import|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|negative regulation of cytokine secretion involved in immune response|negative regulation of interleukin-1 beta secretion|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid efflux|platelet activation|platelet degranulation|positive regulation of cholesterol esterification|positive regulation of hydrolase activity|protein stabilization|reverse cholesterol transport	endocytic vesicle|endoplasmic reticulum lumen|plasma membrane|spherical high-density lipoprotein particle|stored secretory granule|very-low-density lipoprotein particle	apolipoprotein A-I receptor binding|beta-amyloid binding|cholesterol binding|cholesterol transporter activity|enzyme binding|high-density lipoprotein particle receptor binding|identical protein binding|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding			cervix(1)|endometrium(1)|lung(4)|prostate(1)|skin(2)	9	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.59e-05)|all cancers(92;0.000162)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		TCCTCGAGCGCGGGCTTGGCC	0.642000													3	54					0	0	1	0	0
LCA5	167691	broad.mit.edu	37	6	80201370	80201370	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr6:80201370G>A	ENST00000392959.1	-	7	1644	c.1033C>T	c.(1033-1035)Cct>Tct	p.P345S	LCA5_ENST00000467898.2_Missense_Mutation_p.P345S|LCA5_ENST00000369846.4_Missense_Mutation_p.P345S	NM_181714.3	NP_859065.2	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	345					protein transport	cilium axoneme|microtubule basal body	protein binding			haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(11)|lung(15)|prostate(2)|skin(1)	32		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		GGAGTTAAAGGATATTCTTCT	0.373000													21	111					0	0	1	0	0
TULP1	7287	broad.mit.edu	37	6	35473863	35473863	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr6:35473863G>A	ENST00000229771.6	-	10	995	c.916C>T	c.(916-918)Cgc>Tgc	p.R306C	TULP1_ENST00000322263.4_Missense_Mutation_p.R253C	NM_003322.3	NP_003313.3	O00294	TULP1_HUMAN	tubby like protein 1	306					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(2)|lung(5)|ovary(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	19						AGCCGGCAGCGCACCGTGCGG	0.677000													14	42					0	0	1	0	0
ARMC3	219681	broad.mit.edu	37	10	23248052	23248052	+	Missense_Mutation	SNP	C	C	G			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr10:23248052C>G	ENST00000298032.5	+	5	430	c.346C>G	c.(346-348)Cag>Gag	p.Q116E	ARMC3_ENST00000464017.1_3'UTR|ARMC3_ENST00000376528.4_5'UTR|ARMC3_ENST00000409049.3_Missense_Mutation_p.Q116E|ARMC3_ENST00000409983.3_Missense_Mutation_p.Q116E	NM_173081.3	NP_775104.2	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	116							binding			breast(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(8)|lung(24)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	47						TGTCATTGCCCAGCTCGCTCC	0.284000													9	73					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189060901	189060901	+	Silent	SNP	G	G	A	rs147444946	byFrequency	TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr4:189060901G>A	ENST00000332517.3	+	1	329	c.189G>A	c.(187-189)ccG>ccA	p.P63P		NM_178556.3	NP_848651.2	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	63					multicellular organismal development		ligase activity|zinc ion binding			NS(3)|breast(2)|central_nervous_system(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(30)|ovary(2)|pancreas(1)|skin(3)|upper_aerodigestive_tract(1)	60		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		TGGAGGGCCCGCATTTCCAGT	0.602000													7	73					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152082552	152082552	+	Silent	SNP	C	C	T			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr1:152082552C>T	ENST00000368804.1	-	2	3140	c.3141G>A	c.(3139-3141)gaG>gaA	p.E1047E		NM_007113.2	NP_009044.2	Q07283	TRHY_HUMAN	trichohyalin	1047	10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			NS(2)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(20)|kidney(9)|large_intestine(16)|lung(33)|ovary(3)|pancreas(1)|prostate(4)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(4)	105	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATATTGCCTCTCCCGCTCCT	0.582000													4	105					0	0	1	0	0
NLGN1	22871	broad.mit.edu	37	3	173322724	173322724	+	Silent	SNP	A	A	G			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr3:173322724A>G	ENST00000457714.1	+	3	765	c.336A>G	c.(334-336)caA>caG	p.Q112Q	NLGN1_ENST00000545397.1_Silent_p.Q112Q|NLGN1_ENST00000401917.3_Silent_p.Q112Q|NLGN1_ENST00000361589.4_Silent_p.Q112Q	NM_014932.2	NP_055747.1	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	112					calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			breast(2)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(9)|liver(2)|lung(54)|ovary(1)|pancreas(1)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	83	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			ATGCCACTCAATTTGCTCCTG	0.463000													18	69					0	0	1	0	0
CROCCP2	0	broad.mit.edu	37	1	16952952	16952952	+	RNA	SNP	G	G	A	rs1762946	by1000genomes	TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr1:16952952G>A	ENST00000412962.1	-	0	664																											TCTGCCCTCAGCTTGGTCACG	0.622000													4	21					0	0	1	0	0
LL22NC03-80A10.6	0	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr22:22664606A>G	ENST00000426066.1	+	0	787					NR_027293.1																						GTCTTCATGCAAACTTGGTAT	0.398000													3	18					0	0	1	0	0
POM121L9P	0	broad.mit.edu	37	22	24659536	24659536	+	RNA	SNP	C	C	T			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr22:24659536C>T	ENST00000414583.2	+	0	3061					NR_003714.1																						GATCTCATCGCGGACACCACT	0.512000													3	8					0	0	1	0	0
SLC25A44	9673	broad.mit.edu	37	1	156177746	156177746	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr1:156177746C>T	ENST00000359511.4	+	3	867	c.695C>T	c.(694-696)gCt>gTt	p.A232V	SLC25A44_ENST00000469537.1_3'UTR|SLC25A44_ENST00000423538.2_Missense_Mutation_p.A209V	NM_014655.2	NP_055470.1	Q96H78	S2544_HUMAN	solute carrier family 25, member 44	232					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			breast(3)|kidney(2)|large_intestine(2)|lung(1)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	14	Hepatocellular(266;0.158)					GGGCCCCTGGCTGCAGCCACT	0.557000													9	41					0	0	1	0	0
PTPN18	26469	broad.mit.edu	37	2	131129929	131129934	+	In_Frame_Del	DEL	GACGGG	GACGGG	-	rs112040677		TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr2:131129929_131129934delGACGGG	ENST00000175756.5	+	13	1214_1219	c.1113_1118delGACGGG	c.(1111-1119)cag>ca	p.QTG371del	PTPN18_ENST00000347849.3_In_Frame_Del_p.QTG264del	NM_014369.3	NP_055184.2	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type 18 (brain-derived)	371						cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity	p.T378_G379delTG(1)		endometrium(1)|kidney(3)|large_intestine(2)|lung(5)|ovary(3)|prostate(1)	15	Colorectal(110;0.1)					gtgggacgcagacggggacggggacg	0.777													3	3	---	---	---	---					
PMS2P4	0	broad.mit.edu	37	7	66762448	66762449	+	RNA	INS	-	-	T			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr7:66762448_66762449insT	ENST00000414507.1	-	0	184																											aaaaaaaaaaaaTGGACCCATG	0.401													2	4	---	---	---	---					
TRUB1	142940	broad.mit.edu	37	10	116698250	116698250	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr10:116698250delC	ENST00000298746.3	+	1	299	c.238delC	c.(238-240)ccfs	p.P80fs	TRUB1_ENST00000485065.1_3'UTR	NM_139169.4	NP_631908.1	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase family member 1	80					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(2)|kidney(2)|large_intestine(1)|lung(5)|urinary_tract(2)	12		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		GCCCAAAGGGCCCACTTCAGC	0.657													2	4	---	---	---	---					
CCDC137	339230	broad.mit.edu	37	17	79639622	79639622	+	Frame_Shift_Del	DEL	A	A	-	rs35963091		TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chr17:79639622delA	ENST00000329214.8	+	6	1161	c.758delA	c.(757-759)ggfs	p.E254fs		NM_199287.2	NP_954981.1	Q6PK04	CC137_HUMAN	coiled-coil domain containing 137	254										NS(1)|central_nervous_system(2)|endometrium(2)|large_intestine(5)|lung(2)	12	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			ATTGTGGAGGAGGAGAGAGAG	0.672													2	4	---	---	---	---					
EFNB1	1947	broad.mit.edu	37	X	68058545	68058545	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QR-A6H0-01A-11D-A35D-08	TCGA-QR-A6H0-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a7beead6-bfb3-41cd-8d66-b630a1d927ca	8c64013f-3fef-4ace-ae3d-75f927c4c567	g.chrX:68058545delC	ENST00000204961.4	+	2	994	c.214delC	c.(214-216)ccfs	p.P72fs		NM_004429.4	NP_004420.1	P98172	EFNB1_HUMAN	ephrin-B1	72					cell adhesion|cell-cell signaling	integral to plasma membrane|soluble fraction|synapse	ephrin receptor binding			breast(1)|endometrium(7)|kidney(1)|large_intestine(3)|lung(9)|ovary(1)	22						AGCAGGGCGGCCCTATGAGTA	0.572													2	4	---	---	---	---					
