Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
OR2W3	343171	broad.mit.edu	37	1	248059477	248059477	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr1:248059477G>A	ENST00000537741.1	+	3	846	c.589G>A	c.(589-591)Ggc>Agc	p.G197S	OR2W3_ENST00000360358.3_Missense_Mutation_p.G197S			Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W, member 3	197					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|kidney(2)|large_intestine(2)|lung(33)|ovary(1)|pancreas(1)|prostate(1)|skin(5)|upper_aerodigestive_tract(3)	49	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGCCATCGAAGGCACCGTCTT	0.597000													6	106					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71500137	71500137	+	Nonsense_Mutation	SNP	C	C	G			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr4:71500137C>G	ENST00000396073.3	+	6	604	c.323C>G	c.(322-324)tCa>tGa	p.S108*		NM_031889.2	NP_114095.2	Q9NRM1	ENAM_HUMAN	enamelin	108					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			haematopoietic_and_lymphoid_tissue(1)|ovary(3)|upper_aerodigestive_tract(2)	6			Lung(101;0.235)			CGGAAATCCTCAGCACCCAAA	0.522000													19	100					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70048984	70048984	+	Silent	SNP	G	G	A			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr12:70048984G>A	ENST00000330891.5	-	10	1936	c.1710C>T	c.(1708-1710)agC>agT	p.S570S	BEST3_ENST00000553096.1_Silent_p.S464S|BEST3_ENST00000488961.1_Silent_p.S357S|BEST3_ENST00000331471.4_Intron	NM_032735.2	NP_116124.2	Q8N1M1	BEST3_HUMAN	bestrophin 3	570						chloride channel complex|plasma membrane	chloride channel activity			cervix(2)|endometrium(1)|kidney(1)|large_intestine(1)|lung(4)|prostate(1)|skin(2)	12	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			TTTCCTCAGCGCTGGCTGAAA	0.557000													21	28					0	0	1	0	0
OGT	8473	broad.mit.edu	37	X	70756122	70756122	+	Silent	SNP	C	C	T			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chrX:70756122C>T	ENST00000373719.3	+	2	349	c.132C>T	c.(130-132)tgC>tgT	p.C44C	OGT_ENST00000498566.1_3'UTR|OGT_ENST00000373701.3_Silent_p.C34C	NM_181672.2|NM_181673.2	NP_858058.1|NP_858059.1	O15294	OGT1_HUMAN	O-linked N-acetylglucosamine (GlcNAc) transferase	44					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			breast(6)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(5)|liver(3)|lung(9)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	43	Renal(35;0.156)					AGAGACACTGCATGCAGCTCT	0.478000													18	24					0	0	1	0	0
SPATA31A6	389730	broad.mit.edu	37	9	43625500	43625500	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr9:43625500G>A	ENST00000332857.6	-	4	3215	c.3187C>T	c.(3187-3189)Cgg>Tgg	p.R1063W		NM_001145196.1	NP_001138668.1			SPATA31 subfamily A, member 6																		TGGGAAGCCCGCATGTTCCCA	0.557000													4	91					0	0	1	0	0
IL6ST	3572	broad.mit.edu	37	5	55259298	55259298	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr5:55259298T>C	ENST00000381298.2	-	7	1007	c.695A>G	c.(694-696)aAc>aGc	p.N232S	IL6ST_ENST00000336909.5_Missense_Mutation_p.N232S|IL6ST_ENST00000502326.3_Missense_Mutation_p.N232S|IL6ST_ENST00000381287.4_Missense_Mutation_p.N232S|IL6ST_ENST00000536319.1_Missense_Mutation_p.N232S|IL6ST_ENST00000381286.3_Intron|IL6ST_ENST00000381293.2_Missense_Mutation_p.N66S|IL6ST_ENST00000522633.2_Missense_Mutation_p.N232S|IL6ST_ENST00000381294.3_Missense_Mutation_p.N232S	NM_001190981.1|NM_002184.3|NM_175767.2	NP_001177910.1|NP_002175.2|NP_786943.1	P40189	IL6RB_HUMAN	interleukin 6 signal transducer (gp130, oncostatin M receptor)	232	Fibronectin type-III 2.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			breast(2)|endometrium(5)|kidney(5)|large_intestine(4)|liver(2)|lung(1)|ovary(1)|prostate(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	26		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				TTCCTCTGAGTTGATCACTGA	0.294000			O		hepatocellular ca								12	41					0	0	1	0	0
LILRB5	0	broad.mit.edu	37	19	54754889	54754889	+	Silent	SNP	T	T	C			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr19:54754889T>C	ENST00000450632.1	-	13	1823	c.1746A>G	c.(1744-1746)agA>agG	p.R582R	LILRB5_ENST00000345866.6_Intron|LILRB5_ENST00000449561.2_Intron|LILRB5_ENST00000316219.5_Intron			O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5	388					cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			NS(1)|breast(1)|endometrium(3)|kidney(5)|large_intestine(12)|lung(25)|ovary(1)|pancreas(1)|prostate(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	56	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGTCCATCTGTCTGTCCTCTT	0.597000													4	38					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202287753	202287753	+	Missense_Mutation	SNP	C	C	G			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr1:202287753C>G	ENST00000367278.3	+	18	2411	c.2322C>G	c.(2320-2322)caC>caG	p.H774Q	LGR6_ENST00000439764.2_Missense_Mutation_p.H635Q|LGR6_ENST00000255432.7_Missense_Mutation_p.H722Q	NM_001017403.1	NP_001017403.1	Q9HBX8	LGR6_HUMAN	leucine-rich repeat containing G protein-coupled receptor 6	774						integral to membrane|plasma membrane	protein-hormone receptor activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(16)|ovary(3)|pancreas(1)|prostate(3)|skin(3)	36						TGGTGAGGCACGTGGCCTGGC	0.642000													3	35					0	0	1	0	0
ZMYND8	23613	broad.mit.edu	37	20	45910870	45910870	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr20:45910870G>A	ENST00000311275.7	-	10	1167	c.914C>T	c.(913-915)gCc>gTc	p.A305V	ZMYND8_ENST00000471951.2_Missense_Mutation_p.A325V|ZMYND8_ENST00000352431.2_Missense_Mutation_p.A325V|ZMYND8_ENST00000355972.4_Missense_Mutation_p.A305V|ZMYND8_ENST00000468376.2_5'UTR|ZMYND8_ENST00000396281.4_Missense_Mutation_p.A305V|ZMYND8_ENST00000536340.1_Missense_Mutation_p.A332V|ZMYND8_ENST00000458360.2_Missense_Mutation_p.A300V|ZMYND8_ENST00000262975.4_Missense_Mutation_p.A305V|ZMYND8_ENST00000372023.3_Missense_Mutation_p.A300V|ZMYND8_ENST00000446994.2_Missense_Mutation_p.A242V|ZMYND8_ENST00000360911.3_Missense_Mutation_p.A300V|ZMYND8_ENST00000461685.1_Missense_Mutation_p.A325V|ZMYND8_ENST00000540497.1_Missense_Mutation_p.A300V			Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8	305	PWWP.						protein binding|zinc ion binding			NS(1)|central_nervous_system(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(11)|lung(22)|ovary(1)|prostate(3)|skin(2)|urinary_tract(8)	62			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			AAAGAATCGGGCATCGACCTG	0.448000													5	68					0	0	1	0	0
MYO1C	4641	broad.mit.edu	37	17	1381197	1381197	+	Silent	SNP	G	G	A			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr17:1381197G>A	ENST00000359786.5	-	13	1794	c.1470C>T	c.(1468-1470)atC>atT	p.I490I	MYO1C_ENST00000438665.2_Silent_p.I471I|MYO1C_ENST00000545534.2_Silent_p.I466I|MYO1C_ENST00000361007.2_Silent_p.I455I|MYO1C_ENST00000575158.1_Silent_p.I455I	NM_001080779.1	NP_001074248.1	O00159	MYO1C_HUMAN	myosin IC	490	Myosin head-like.				mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(1)|liver(2)|lung(7)|upper_aerodigestive_tract(1)|urinary_tract(2)	17				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AAATCGAGATGATGCCCTTAA	0.567000													6	111					0	0	1	0	0
NFE2L2	4780	broad.mit.edu	37	2	178095651	178095651	+	Silent	SNP	T	T	C			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr2:178095651T>C	ENST00000397062.3	-	5	2234	c.1680A>G	c.(1678-1680)ttA>ttG	p.L560L	NFE2L2_ENST00000464747.1_Silent_p.L544L|NFE2L2_ENST00000446151.2_Silent_p.L537L|NFE2L2_ENST00000397063.4_Silent_p.L544L	NM_006164.4	NP_006155.2	Q16236	NF2L2_HUMAN	nuclear factor, erythroid 2-like 2	560					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|cervix(4)|endometrium(14)|kidney(5)|large_intestine(4)|liver(13)|lung(71)|oesophagus(29)|skin(2)|upper_aerodigestive_tract(11)|urinary_tract(4)	158			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			CTTCGAGATATAAGGTGCTGA	0.358000			Mis		"""NSCLC, HNSCC"""					HNSCC(56;0.16)			6	103					0	0	1	0	0
ZNF574	64763	broad.mit.edu	37	19	42584442	42584442	+	Nonsense_Mutation	SNP	C	C	T			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr19:42584442C>T	ENST00000600245.1	+	2	2339	c.1684C>T	c.(1684-1686)Caa>Taa	p.Q562*	ZNF574_ENST00000359044.4_Nonsense_Mutation_p.Q562*|ZNF574_ENST00000222339.7_Nonsense_Mutation_p.Q652*			Q6ZN55	ZN574_HUMAN	zinc finger protein 574	562					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(3)|lung(6)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	20		Prostate(69;0.059)				GGCTTTCACGCAAAGCTCCAC	0.632000													5	74					0	0	1	0	0
SDCCAG3	10807	broad.mit.edu	37	9	139302344	139302344	+	Silent	SNP	T	T	C			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr9:139302344T>C	ENST00000298537.7	-	3	478	c.267A>G	c.(265-267)agA>agG	p.R89R	SDCCAG3_ENST00000357365.3_Silent_p.R112R|SDCCAG3_ENST00000371725.3_Silent_p.R39R	NM_006643.3	NP_006634.3	Q96C92	SDCG3_HUMAN	serologically defined colon cancer antigen 3	112						cytoplasm				NS(1)|breast(2)|cervix(1)|endometrium(2)|large_intestine(1)|lung(9)	16		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;8.18e-06)|Epithelial(140;9.31e-06)		TCAGAAACTCTCTAAAAGAGA	0.453000													5	62					0	0	1	0	0
ZNF485	220992	broad.mit.edu	37	10	44112593	44112593	+	Missense_Mutation	SNP	A	A	G			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr10:44112593A>G	ENST00000361807.3	+	5	1296	c.1102A>G	c.(1102-1104)Acc>Gcc	p.T368A	ZNF485_ENST00000374437.2_Missense_Mutation_p.T277A|ZNF485_ENST00000374435.3_Missense_Mutation_p.T368A	NM_145312.3	NP_660355.2	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	368					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(8)|skin(1)|urinary_tract(1)	16						AAAGAGCTCAACCCTTACTGG	0.443000													9	33					0	0	1	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46053346	46053346	+	Silent	SNP	C	C	T			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr17:46053346C>T	ENST00000536708.2	+	8	949	c.840C>T	c.(838-840)ctC>ctT	p.L280L	CDK5RAP3_ENST00000338399.4_Silent_p.L255L	NM_001278197.1	NP_001265126.1	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	255					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding			NS(1)|central_nervous_system(2)|cervix(3)|endometrium(3)|large_intestine(2)|lung(5)|prostate(1)|skin(1)	18						GACCCCACCTCGAGGAGCTTC	0.602000													3	28					0	0	1	0	0
ZMYND8	23613	broad.mit.edu	37	20	45910871	45910871	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr20:45910871C>T	ENST00000311275.7	-	10	1166	c.913G>A	c.(913-915)Gcc>Acc	p.A305T	ZMYND8_ENST00000471951.2_Missense_Mutation_p.A325T|ZMYND8_ENST00000352431.2_Missense_Mutation_p.A325T|ZMYND8_ENST00000355972.4_Missense_Mutation_p.A305T|ZMYND8_ENST00000468376.2_5'UTR|ZMYND8_ENST00000396281.4_Missense_Mutation_p.A305T|ZMYND8_ENST00000536340.1_Missense_Mutation_p.A332T|ZMYND8_ENST00000458360.2_Missense_Mutation_p.A300T|ZMYND8_ENST00000262975.4_Missense_Mutation_p.A305T|ZMYND8_ENST00000372023.3_Missense_Mutation_p.A300T|ZMYND8_ENST00000446994.2_Missense_Mutation_p.A242T|ZMYND8_ENST00000360911.3_Missense_Mutation_p.A300T|ZMYND8_ENST00000461685.1_Missense_Mutation_p.A325T|ZMYND8_ENST00000540497.1_Missense_Mutation_p.A300T			Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8	305	PWWP.						protein binding|zinc ion binding			NS(1)|central_nervous_system(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(11)|lung(22)|ovary(1)|prostate(3)|skin(2)|urinary_tract(8)	62			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			AAGAATCGGGCATCGACCTGC	0.448000													5	67					0	0	1	0	0
INPP1	3628	broad.mit.edu	37	2	191231466	191231466	+	Missense_Mutation	SNP	C	C	G			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr2:191231466C>G	ENST00000392329.2	+	5	1011	c.311C>G	c.(310-312)gCa>gGa	p.A104G	INPP1_ENST00000541441.1_Missense_Mutation_p.A104G|INPP1_ENST00000322522.4_Missense_Mutation_p.A104G	NM_001128928.1	NP_001122400.1	P49441	INPP_HUMAN	inositol polyphosphate-1-phosphatase	104					signal transduction		inositol-1,4-bisphosphate 1-phosphatase activity|metal ion binding			cervix(1)|large_intestine(2)|lung(6)|ovary(1)|urinary_tract(1)	11			OV - Ovarian serous cystadenocarcinoma(117;0.000286)|Epithelial(96;0.0186)|all cancers(119;0.057)		Lithium(DB01356)	GAGGAAACAGCAGAGCTTCTT	0.448000													5	71					0	0	1	0	0
KLHL7	55975	broad.mit.edu	37	7	23213904	23213904	+	Missense_Mutation	SNP	C	C	A			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr7:23213904C>A	ENST00000322231.7	+	12	2172	c.1682C>A	c.(1681-1683)aCc>aAc	p.T561N	KLHL7_ENST00000409689.1_Missense_Mutation_p.T535N|KLHL7_ENST00000545443.1_Missense_Mutation_p.T561N|KLHL7_ENST00000539124.1_Missense_Mutation_p.T507N|AC005082.1_ENST00000366347.4_Intron|KLHL7_ENST00000339077.4_Missense_Mutation_p.T583N|KLHL7_ENST00000542558.1_Missense_Mutation_p.T358N			Q8IXQ5	KLHL7_HUMAN	kelch-like family member 7	583						Golgi apparatus|nucleolus|plasma membrane				breast(1)|central_nervous_system(1)|kidney(2)|large_intestine(6)|lung(11)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	25						AATGAAGAGACCCTTGAAACA	0.408000													20	35					1.28384e-07	1.38655e-07	1	1	0
RP11-34D15.2	0	broad.mit.edu	37	10	102104600	102104601	+	RNA	INS	-	-	T			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr10:102104600_102104601insT	ENST00000429420.1	-	0	103																											AAAAATCACAAttttttttttt	0.401													2	4	---	---	---	---					
RP11-35J10.5	0	broad.mit.edu	37	11	7768343	7768343	+	RNA	DEL	T	T	-			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr11:7768343delT	ENST00000527565.1	-	0	542																											CAAGGTGGCATTTGTGATCTA	0.473													2	4	---	---	---	---					
MS4A4E	643680	broad.mit.edu	37	11	59982050	59982050	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr11:59982050delT	ENST00000427611.2	-	5	491	c.272delA	c.(271-273)agfs	p.K91fs	MS4A4E_ENST00000398984.2_Frame_Shift_Del_p.K104fs|MS4A4E_ENST00000425663.1_Frame_Shift_Del_p.K61fs|MS4A4E_ENST00000526086.1_Frame_Shift_Del_p.K72fs|MS4A4E_ENST00000528394.1_Frame_Shift_Del_p.K104fs|MS4A4E_ENST00000398986.2_Frame_Shift_Del_p.K72fs					membrane-spanning 4-domains, subfamily A, member 4E											ovary(1)	1						TCACCAGACCTTTTGTTGTTC	0.308													2	4	---	---	---	---					
ANKK1	255239	broad.mit.edu	37	11	113268739	113268740	+	Splice_Site	DEL	GT	GT	-			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chr11:113268739_113268740delGT	ENST00000303941.3	+	7	1088		c.e7+1			NM_178510.1	NP_848605.1	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1								ATP binding|protein serine/threonine kinase activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(3)|liver(2)|lung(14)|ovary(1)|stomach(1)	29		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		ATGGACAGTGGTGAGTCTGGGT	0.599													2	4	---	---	---	---					
SCML2	10389	broad.mit.edu	37	X	18283726	18283726	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QR-A70C-01A-21D-A35D-08	TCGA-QR-A70C-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4765d0df-a878-4492-8744-14674ed5fd2e	9def449a-5289-4f58-8bb7-5684a7dc9f64	g.chrX:18283726delT	ENST00000251900.4	-	8	1086	c.927delA	c.(925-927)aafs	p.K309fs	SCML2_ENST00000398048.3_Frame_Shift_Del_p.K45fs	NM_006089.2	NP_006080.1	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2 (Drosophila)	309					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity			breast(4)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|lung(13)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	36	Hepatocellular(33;0.183)					AGTTTGGACCTTTTTTCCTTG	0.358													7	162	---	---	---	---					
