Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TXNDC2	0	broad.mit.edu	37	18	9886961	9886961	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr18:9886961G>A	ENST00000306084.6	+	2	684	c.485G>A	c.(484-486)gGc>gAc	p.G162D	TXNDC2_ENST00000536353.2_Missense_Mutation_p.G95D|TXNDC2_ENST00000357775.4_Missense_Mutation_p.G95D	NM_001098529.1	NP_001091999.1	Q86VQ3	TXND2_HUMAN	thioredoxin domain containing 2 (spermatozoa)	162	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			NS(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(9)|ovary(2)|pancreas(1)|skin(7)|urinary_tract(1)	31						CCCAAGCTGGGCAATATTCCC	0.562000													4	141					0	0	1	0	0
SIMC1	375484	broad.mit.edu	37	5	175764121	175764121	+	Silent	SNP	G	G	C			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr5:175764121G>C	ENST00000443967.1	+	11	2735	c.2328G>C	c.(2326-2328)ctG>ctC	p.L776L	SIMC1_ENST00000332772.4_Silent_p.L237L|SIMC1_ENST00000430704.2_Silent_p.L361L|SIMC1_ENST00000341199.6_Silent_p.L361L					SUMO-interacting motifs containing 1																		TGCAGTTTCTGCTGTCCAGTT	0.408000													17	90					0	0	1	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116062114	116062114	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr10:116062114C>T	ENST00000369271.3	-	12	1714	c.1414G>A	c.(1414-1416)Gcc>Acc	p.A472T	AFAP1L2_ENST00000304129.4_Missense_Mutation_p.A472T|AFAP1L2_ENST00000545353.1_Missense_Mutation_p.A525T	NM_001001936.1|NM_032550.2	NP_001001936.1|NP_115939.1	Q8N4X5	AF1L2_HUMAN	actin filament associated protein 1-like 2	472					inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding	p.A472T(1)		breast(1)|endometrium(1)|kidney(1)|large_intestine(3)|liver(1)|lung(11)|ovary(1)|prostate(2)	21		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GAGTTTTTGGCCGCACTCACA	0.547000													5	159					0	0	1	0	0
SNX19	399979	broad.mit.edu	37	11	130785052	130785052	+	Missense_Mutation	SNP	G	G	C			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr11:130785052G>C	ENST00000265909.4	-	1	1352	c.783C>G	c.(781-783)caC>caG	p.H261Q	SNX19_ENST00000533318.1_Intron|SNX19_ENST00000539184.1_Intron|SNX19_ENST00000528555.1_Intron|SNX19_ENST00000530356.1_Intron|SNX19_ENST00000533214.1_Missense_Mutation_p.H261Q	NM_014758.2	NP_055573.2	Q92543	SNX19_HUMAN	sorting nexin 19	261	PXA.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(8)|ovary(3)|prostate(1)|skin(6)|urinary_tract(1)	35	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		CGAGTACAAGGTGGATCCAGT	0.547000													19	75					0	0	1	0	0
CD96	0	broad.mit.edu	37	3	111263944	111263944	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr3:111263944G>A	ENST00000352690.4	+	2	353	c.113G>A	c.(112-114)gGc>gAc	p.G38D	CD96_ENST00000283285.5_Missense_Mutation_p.G38D|CD96_ENST00000438817.2_Missense_Mutation_p.G38D	NM_005816.4	NP_005807.1	P40200	TACT_HUMAN	CD96 molecule	38	Ig-like V-type 1.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				central_nervous_system(1)|endometrium(6)|kidney(3)|large_intestine(4)|liver(2)|lung(14)|skin(5)	35						GCTACACTTGGCTCTGATGTC	0.403000									Opitz Trigonocephaly syndrome				4	114					0	0	1	0	0
VPS13C	54832	broad.mit.edu	37	15	62253881	62253881	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr15:62253881T>C	ENST00000261517.5	-	35	3888	c.3815A>G	c.(3814-3816)cAt>cGt	p.H1272R	VPS13C_ENST00000249837.3_Missense_Mutation_p.H1229R|VPS13C_ENST00000395896.4_Missense_Mutation_p.H1272R|VPS13C_ENST00000395898.3_Missense_Mutation_p.H1229R	NM_020821.2	NP_065872.1	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13 homolog C (S. cerevisiae)	1272					protein localization					NS(3)|breast(4)|endometrium(4)|kidney(9)|large_intestine(26)|lung(46)|ovary(5)|prostate(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	117						GAACTGATTATGAACTCTGAT	0.383000													35	63					0	0	1	0	0
CPA4	51200	broad.mit.edu	37	7	129948219	129948219	+	Missense_Mutation	SNP	T	T	G			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr7:129948219T>G	ENST00000222482.4	+	8	803	c.775T>G	c.(775-777)Tgg>Ggg	p.W259G	CPA4_ENST00000493259.1_Missense_Mutation_p.W155G|CPA4_ENST00000445470.2_Missense_Mutation_p.W226G	NM_016352.3	NP_057436.2	Q9UI42	CBPA4_HUMAN	carboxypeptidase A4	259					histone acetylation|proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(10)|ovary(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	21	Melanoma(18;0.0435)					AAATAGAAACTGGAACGCTAG	0.562000													5	50					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632137	156632137	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr4:156632137T>C	ENST00000296518.7	+	6	1029	c.820T>C	c.(820-822)Tcg>Ccg	p.S274P	GUCY1A3_ENST00000513574.1_Missense_Mutation_p.S274P|GUCY1A3_ENST00000511108.1_Missense_Mutation_p.S274P|GUCY1A3_ENST00000511507.1_Missense_Mutation_p.S274P|GUCY1A3_ENST00000455639.2_Missense_Mutation_p.S274P|GUCY1A3_ENST00000393832.3_Missense_Mutation_p.S16P|GUCY1A3_ENST00000506455.1_Missense_Mutation_p.S274P			Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3	274					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(25)|liver(2)|lung(19)|ovary(1)|pancreas(1)|prostate(1)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	64	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ACCCCAGTCCTCGCTGGTGAT	0.458000													4	77					0	0	1	0	0
JOSD1	9929	broad.mit.edu	37	22	39085109	39085109	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr22:39085109T>C	ENST00000216039.5	-	3	1019	c.340A>G	c.(340-342)Aac>Gac	p.N114D		NM_014876.5	NP_055691.1	Q15040	JOS1_HUMAN	Josephin domain containing 1	114	Josephin.						peptidase activity			large_intestine(1)|lung(1)|ovary(2)|pancreas(1)	5	Melanoma(58;0.04)					CCCATGACGTTAGTGAGGGCA	0.552000													7	15					0	0	1	0	0
AOC3	8639	broad.mit.edu	37	17	41003755	41003755	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr17:41003755G>A	ENST00000308423.2	+	1	555	c.395G>A	c.(394-396)aGg>aAg	p.R132K		NM_003734.2	NP_003725.1	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3	132					amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			breast(1)|central_nervous_system(4)|endometrium(4)|kidney(1)|large_intestine(8)|lung(14)|ovary(1)|skin(8)	41		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	TTCTTTGGCAGGCAACCCCAG	0.677000													7	31					0	0	1	0	0
DPPA2	151871	broad.mit.edu	37	3	109027103	109027103	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr3:109027103C>T	ENST00000478945.1	-	6	680	c.434G>A	c.(433-435)cGa>cAa	p.R145Q		NM_138815.3	NP_620170.3	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	145						nucleus	nucleic acid binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(19)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	32						CCTCGAACATCGCTGTAATCT	0.438000													5	56					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1418187	1418187	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr2:1418187G>A	ENST00000345913.4	+	2	98	c.7G>A	c.(7-9)Gcg>Acg	p.A3T	TPO_ENST00000337415.3_Missense_Mutation_p.A3T|TPO_ENST00000382201.3_Missense_Mutation_p.A3T|TPO_ENST00000382269.3_Missense_Mutation_p.A3T|TPO_ENST00000497517.2_Intron|TPO_ENST00000349624.3_Missense_Mutation_p.A3T|TPO_ENST00000382198.1_Missense_Mutation_p.A3T|TPO_ENST00000539820.1_Missense_Mutation_p.A3T|TPO_ENST00000329066.4_Missense_Mutation_p.A3T|TPO_ENST00000346956.3_Missense_Mutation_p.A3T	NM_000547.5	NP_000538.3	P07202	PERT_HUMAN	thyroid peroxidase	3					cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			breast(1)|central_nervous_system(3)|endometrium(8)|kidney(4)|large_intestine(14)|liver(2)|lung(33)|ovary(8)|pancreas(6)|prostate(4)|skin(7)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	95	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	TAGAATGAGAGCGCTCGCTGT	0.522000													11	25					0	0	1	0	0
MLLT6	4302	broad.mit.edu	37	17	36881820	36881820	+	Missense_Mutation	SNP	A	A	G	rs145698748		TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr17:36881820A>G	ENST00000325718.7	+	20	3342	c.3251A>G	c.(3250-3252)aAa>aGa	p.K1084R		NM_005937.3	NP_005928.2	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6	1084					regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|lung(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	8	Breast(7;4.43e-21)					ACCGCTGACAAAGGAGCCTCA	0.582000			T	MLL	AL								4	26					0	0	1	0	0
RTN4	57142	broad.mit.edu	37	2	55252359	55252359	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr2:55252359G>A	ENST00000337526.6	-	3	3119	c.2876C>T	c.(2875-2877)gCc>gTc	p.A959V	RTN4_ENST00000402434.2_Intron|RTN4_ENST00000405240.1_Missense_Mutation_p.A753V|RTN4_ENST00000354474.6_Missense_Mutation_p.A727V|RTN4_ENST00000317610.7_Intron|RTN4_ENST00000404909.1_Missense_Mutation_p.A753V|RTN4_ENST00000394611.2_Missense_Mutation_p.A753V|RTN4_ENST00000357732.4_Intron|RTN4_ENST00000357376.3_Missense_Mutation_p.A753V	NM_020532.4	NP_065393.1	Q9NQC3	RTN4_HUMAN	reticulon 4	959					apoptosis|axonal fasciculation|cerebral cortex radial glia guided migration|endoplasmic reticulum tubular network organization|negative regulation of anti-apoptosis|negative regulation of axon extension|nerve growth factor receptor signaling pathway|regulation of apoptosis|regulation of branching morphogenesis of a nerve|regulation of cell migration	integral to endoplasmic reticulum membrane|nuclear envelope|plasma membrane	protein binding			NS(2)|breast(4)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(11)|lung(9)|ovary(2)|prostate(1)|skin(1)|stomach(1)	36						TGCTTGAGTGGCCAAAGCAGA	0.403000													4	108					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158549598	158549598	+	Missense_Mutation	SNP	A	A	G			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr1:158549598A>G	ENST00000368150.1	-	1	91	c.92T>C	c.(91-93)gTt>gCt	p.V31A		NM_001004477.1	NP_001004477.1	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X, member 1 (gene/pseudogene)	31					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|cervix(1)|endometrium(2)|large_intestine(6)|lung(22)|ovary(2)|skin(2)|urinary_tract(1)	37	all_hematologic(112;0.0378)					AGAAAAGCCAACAAGAATGAA	0.368000													20	223					0	0	1	0	0
TRIM51	84767	broad.mit.edu	37	11	55653270	55653270	+	Silent	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr11:55653270G>A	ENST00000449290.2	+	2	458	c.366G>A	c.(364-366)cgG>cgA	p.R122R		NM_032681.3	NP_116070.2	Q9BSJ1	SPRY5_HUMAN	tripartite motif-containing 51	122						intracellular	zinc ion binding										AGGAGCACCGGAATCACATAC	0.478000													8	67					0	0	1	0	0
POLR3B	55703	broad.mit.edu	37	12	106897897	106897897	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr12:106897897G>A	ENST00000228347.4	+	27	3359	c.3137G>A	c.(3136-3138)cGt>cAt	p.R1046H	POLR3B_ENST00000539066.1_Missense_Mutation_p.R988H|RP11-144F15.1_ENST00000551505.1_Intron	NM_018082.5	NP_060552.4	Q9NW08	RPC2_HUMAN	polymerase (RNA) III (DNA directed) polypeptide B	1046					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(14)|lung(22)|ovary(1)|prostate(3)|skin(3)|urinary_tract(2)	57						GGTGGCTTGCGTCTCGGGGAA	0.418000													6	131					0	0	1	0	0
PIGO	84720	broad.mit.edu	37	9	35092369	35092369	+	Silent	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr9:35092369C>T	ENST00000378617.3	-	7	1909	c.1515G>A	c.(1513-1515)gaG>gaA	p.E505E	PIGO_ENST00000341666.3_Silent_p.E505E|PIGO_ENST00000298004.5_Intron|PIGO_ENST00000361778.2_Intron	NM_032634.3	NP_116023.2	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis, class O	505					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			endometrium(3)|kidney(2)|large_intestine(8)|lung(13)|ovary(3)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(3)	38			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CTAGCTTCAGCTCAATAGTTC	0.582000													10	49					0	0	1	0	0
HECA	51696	broad.mit.edu	37	6	139488311	139488311	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr6:139488311C>T	ENST00000367658.2	+	2	1447	c.1162C>T	c.(1162-1164)Ctc>Ttc	p.L388F	RP1-225E12.2_ENST00000588638.1_RNA|RP1-225E12.3_ENST00000585874.1_RNA|RP1-225E12.2_ENST00000587577.1_RNA|RP1-225E12.2_ENST00000586229.1_RNA|RP1-225E12.2_ENST00000415194.2_RNA|RP1-225E12.2_ENST00000588529.1_RNA|RP1-225E12.2_ENST00000590679.1_RNA|RP1-225E12.2_ENST00000586266.1_RNA|RP1-225E12.2_ENST00000589192.1_RNA	NM_016217.2	NP_057301.1	Q9UBI9	HDC_HUMAN	headcase homolog (Drosophila)	388					respiratory tube development					endometrium(4)|kidney(1)|large_intestine(3)|lung(4)|ovary(1)|prostate(1)|skin(1)	15				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		TCTGGCCGCGCTCAGTGCCAG	0.577000													12	45					0	0	1	0	0
THOC1	9984	broad.mit.edu	37	18	246364	246364	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr18:246364C>T	ENST00000261600.6	-	11	885	c.878G>A	c.(877-879)gGa>gAa	p.G293E	THOC1_ENST00000582313.1_5'UTR	NM_005131.2	NP_005122.2	Q96FV9	THOC1_HUMAN	THO complex 1	293					apoptosis|intronless viral mRNA export from host nucleus|mRNA processing|regulation of transcription elongation, DNA-dependent|RNA splicing|signal transduction|transcription, DNA-dependent	cytoplasm|nuclear matrix|nuclear speck|THO complex part of transcription export complex	DNA binding|protein binding|RNA binding			breast(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|skin(1)|stomach(1)|urinary_tract(1)	20		all_cancers(4;0.0896)|Myeloproliferative disorder(11;0.0412)				TACATGTTCTCCTCCTGTTTT	0.274000													7	41					0	0	1	0	0
RP11-156P1.3	0	broad.mit.edu	37	17	45128671	45128671	+	RNA	SNP	T	T	G	rs1056072	by1000genomes	TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr17:45128671T>G	ENST00000575173.1	-	0	418																											GCTCACAAAATAAGTTCCAGG	0.323000													4	283					0	0	1	0	0
C5	727	broad.mit.edu	37	9	123742463	123742463	+	Missense_Mutation	SNP	A	A	C			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr9:123742463A>C	ENST00000223642.1	-	28	3585	c.3556T>G	c.(3556-3558)Ttt>Gtt	p.F1186V		NM_001735.2	NP_001726.2	P01031	CO5_HUMAN	complement component 5	1186					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(7)|kidney(2)|large_intestine(14)|lung(5)|ovary(2)|prostate(4)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	46				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	GCCAATGTAAAGGTGCTCTGG	0.408000													21	77					0	0	1	0	0
KLRD1	3824	broad.mit.edu	37	12	10462061	10462061	+	Nonsense_Mutation	SNP	G	G	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr12:10462061G>T	ENST00000381908.3	+	2	342	c.82G>T	c.(82-84)Gga>Tga	p.G28*	KLRD1_ENST00000543777.1_Nonsense_Mutation_p.G28*|KLRD1_ENST00000543420.1_Nonsense_Mutation_p.G28*|KLRD1_ENST00000350274.5_Intron|KLRD1_ENST00000538997.1_Intron|KLRD1_ENST00000381907.4_Nonsense_Mutation_p.G28*|KLRD1_ENST00000336164.4_Nonsense_Mutation_p.G28*			Q13241	KLRD1_HUMAN	killer cell lectin-like receptor subfamily D, member 1	28					cell surface receptor linked signaling pathway|regulation of immune response	integral to membrane|plasma membrane	sugar binding|transmembrane receptor activity			endometrium(2)|kidney(2)|large_intestine(1)|lung(3)|upper_aerodigestive_tract(2)	10						GTCTACGTTGGGAATTTTGTT	0.343000													15	69					3.32936e-07	3.39218e-07	1	1	0
HAT1	8520	broad.mit.edu	37	2	172841113	172841113	+	Missense_Mutation	SNP	A	A	G			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr2:172841113A>G	ENST00000264108.4	+	9	877	c.841A>G	c.(841-843)Agc>Ggc	p.S281G	HAT1_ENST00000392584.1_Missense_Mutation_p.S196G|SLC25A12_ENST00000472748.1_Intron	NM_003642.3	NP_003633.1	O14929	HAT1_HUMAN	histone acetyltransferase 1	281					chromatin silencing at telomere|DNA packaging	cytoplasm|nuclear matrix|nucleoplasm	histone acetyltransferase activity|protein binding			breast(1)|kidney(1)|large_intestine(5)|liver(2)|lung(8)|ovary(1)|prostate(1)	19			OV - Ovarian serous cystadenocarcinoma(117;0.216)			TCCATCCAAAAGCTATGTGAA	0.333000													27	2					0	0	1	0	0
TRIP11	9321	broad.mit.edu	37	14	92470283	92470283	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr14:92470283T>C	ENST00000267622.4	-	11	4410	c.4037A>G	c.(4036-4038)cAg>cGg	p.Q1346R		NM_004239.3	NP_004230.2	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1346				QQ -> HE (in Ref. 4; AAB84386).	transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			breast(3)|central_nervous_system(2)|endometrium(1)|kidney(8)|large_intestine(12)|lung(17)|ovary(7)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	58				COAD - Colon adenocarcinoma(157;0.223)		TAACTCTTGCTGAAGCAATTC	0.418000			T	PDGFRB	AML								17	62					0	0	1	0	0
FAM83D	81610	broad.mit.edu	37	20	37576619	37576619	+	Missense_Mutation	SNP	T	T	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr20:37576619T>A	ENST00000217429.4	+	3	883	c.842T>A	c.(841-843)aTc>aAc	p.I281N		NM_030919.2	NP_112181.2	Q9H4H8	FA83D_HUMAN	family with sequence similarity 83, member D	251					cell division|mitosis	cytoplasm|spindle pole				endometrium(2)|kidney(2)|large_intestine(7)|lung(12)|ovary(4)|stomach(1)	28		Myeloproliferative disorder(115;0.00878)				ATTGATGGCATCCGCGTGGCA	0.418000													12	75					0	0	1	0	0
DOCK8	81704	broad.mit.edu	37	9	441994	441994	+	Silent	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr9:441994C>T	ENST00000432829.2	+	42	5587	c.5271C>T	c.(5269-5271)atC>atT	p.I1757I	DOCK8_ENST00000453981.1_Silent_p.I1825I|DOCK8_ENST00000469391.1_Silent_p.I1725I|DOCK8_ENST00000382329.1_Silent_p.I1292I	NM_203447.3	NP_982272.2	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1825	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			breast(1)|central_nervous_system(5)|endometrium(2)|kidney(6)|large_intestine(13)|lung(22)|ovary(3)|prostate(3)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(6)	65		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TTCCTGAGATCTCACATAGAC	0.403000													10	85					0	0	1	0	0
DCAF11	0	broad.mit.edu	37	14	24592285	24592285	+	Splice_Site	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr14:24592285C>T	ENST00000446197.3	+	14	2232	c.1506_splice	c.e14+1	p.S502_splice	DCAF11_ENST00000396936.1_Splice_Site_p.S402_splice|DCAF11_ENST00000396941.4_Splice_Site_p.S476_splice|DCAF11_ENST00000559115.1_Splice_Site_p.S502_splice|RP11-468E2.6_ENST00000558325.1_Splice_Site_p.F91_splice	NM_025230.4	NP_079506.3	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11	502						CUL4 RING ubiquitin ligase complex	protein binding	p.S502L(1)									GTCAGCAGTTCGGTGAGGTTG	0.572000													14	43					0	0	1	0	0
CPSF4	10898	broad.mit.edu	37	7	99054072	99054072	+	Silent	SNP	C	C	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr7:99054072C>T	ENST00000436336.2	+	8	845	c.684C>T	c.(682-684)caC>caT	p.H228H	CPSF4_ENST00000451876.1_Silent_p.H195H|ATP5J2_ENST00000466753.1_Intron|CPSF4_ENST00000292476.5_Silent_p.H253H|PTCD1_ENST00000555673.1_Intron|ATP5J2-PTCD1_ENST00000413834.1_Intron|CPSF4_ENST00000441580.1_Silent_p.H175H	NM_001081559.1|NM_006693.2	NP_001075028.1|NP_006684.1	O95639	CPSF4_HUMAN	cleavage and polyadenylation specific factor 4, 30kDa	253					modification by virus of host mRNA processing|mRNA processing|viral infectious cycle	mRNA cleavage and polyadenylation specificity factor complex	RNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|kidney(2)|large_intestine(5)|lung(5)	14	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					AGAAAGGACACTACGCCAACA	0.577000													15	23					0	0	1	0	0
RP11-798G7.5	0	broad.mit.edu	37	17	43587730	43587730	+	RNA	SNP	A	A	C	rs142536398	by1000genomes	TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr17:43587730A>C	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							GTATTGATTCATTTTATTCAT	0.343000													3	50					0	0	1	0	0
RTP4	64108	broad.mit.edu	37	3	187089150	187089150	+	Missense_Mutation	SNP	A	A	G			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr3:187089150A>G	ENST00000259030.2	+	2	840	c.730A>G	c.(730-732)Aca>Gca	p.T244A		NM_022147.2	NP_071430.2	Q96DX8	RTP4_HUMAN	receptor (chemosensory) transporter protein 4	244					detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			breast(1)|endometrium(2)|large_intestine(2)|lung(5)|skin(1)	11	all_cancers(143;4.66e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		CAAATGCTTTACATCAGAATG	0.378000													11	16					0	0	1	0	0
OSBPL6	114880	broad.mit.edu	37	2	179255937	179255937	+	Missense_Mutation	SNP	G	G	T			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr2:179255937G>T	ENST00000190611.4	+	22	2815	c.2439G>T	c.(2437-2439)tgG>tgT	p.W813C	OSBPL6_ENST00000409631.1_Missense_Mutation_p.W777C|OSBPL6_ENST00000315022.2_Missense_Mutation_p.W817C|OSBPL6_ENST00000409045.3_Missense_Mutation_p.W782C|OSBPL6_ENST00000392505.2_Missense_Mutation_p.W838C|OSBPL6_ENST00000359685.3_Missense_Mutation_p.W777C	NM_032523.3	NP_115912.1	Q9BZF3	OSBL6_HUMAN	oxysterol binding protein-like 6	813					lipid transport		lipid binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(13)|lung(18)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	46			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			AGTGCATTTGGAGACCAGGTG	0.527000													45	11					1.35964e-18	1.49838e-18	1	1	0
PYGB	5834	broad.mit.edu	37	20	25273158	25273158	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr20:25273158G>A	ENST00000216962.4	+	17	2196	c.2086G>A	c.(2086-2088)Gcc>Acc	p.A696T		NM_002862.3	NP_002853.2	P11216	PYGB_HUMAN	phosphorylase, glycogen; brain	696					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(4)|lung(12)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)	31					Pyridoxal Phosphate(DB00114)	CATGGACGGCGCCAACGTGGA	0.647000													21	81					0	0	1	0	0
FGF16	8823	broad.mit.edu	37	X	76709702	76709702	+	Missense_Mutation	SNP	A	A	G			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chrX:76709702A>G	ENST00000439435.1	+	1	55	c.55A>G	c.(55-57)Act>Gct	p.T19A				O43320	FGF16_HUMAN	fibroblast growth factor 16	0					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|metabolic process|organ morphogenesis|response to temperature stimulus	extracellular space	growth factor activity			NS(1)|breast(1)|lung(2)	4						CGGGGAGTGGACTCTGGCCTG	0.428000													6	9					0	0	1	0	0
NBPF9	400818	broad.mit.edu	37	1	144814702	144814702	+	Missense_Mutation	SNP	G	G	T	rs145249789	by1000genomes	TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr1:144814702G>T	ENST00000440491.2	+	3	340	c.340G>T	c.(340-342)Gct>Tct	p.A114S	NBPF9_ENST00000281815.8_5'UTR|NBPF9_ENST00000468645.1_3'UTR|NBPF9_ENST00000338347.4_Missense_Mutation_p.A114S	NM_001037675.2	NP_001032764.1			neuroblastoma breakpoint family, member 9											NS(2)|prostate(1)	3						CCTGGTTCACGCTCAGGAACG	0.493000													4	114					5.4927e-09	5.70396e-09	1	1	0
PROM1	8842	broad.mit.edu	37	4	15989292	15989292	+	Silent	SNP	T	T	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr4:15989292T>A	ENST00000505450.1	-	19	2709	c.2097A>T	c.(2095-2097)ggA>ggT	p.G699G	PROM1_ENST00000447510.2_Silent_p.G708G|PROM1_ENST00000539194.1_Silent_p.G708G|PROM1_ENST00000540805.1_Silent_p.G708G|PROM1_ENST00000510224.1_Silent_p.G708G|PROM1_ENST00000508167.1_Silent_p.G699G|PROM1_ENST00000543373.1_Silent_p.G699G	NM_001145848.1	NP_001139320.1	O43490	PROM1_HUMAN	prominin 1	708					camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			breast(2)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(4)|liver(1)|lung(11)|ovary(3)|pancreas(1)|upper_aerodigestive_tract(2)	35						TTACCAACAATCCATTCCCTG	0.353000													23	109					0	0	1	0	0
ZFR	51663	broad.mit.edu	37	5	32419951	32419953	+	In_Frame_Del	DEL	GGT	GGT	-			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr5:32419951_32419953delGGT	ENST00000265069.8	-	3	495_497	c.393_395delACC	c.(391-396)ccc>cc	p.PP131del		NM_016107.3	NP_057191.2	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	131	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding			breast(1)|endometrium(3)|kidney(3)|large_intestine(9)|lung(14)|upper_aerodigestive_tract(2)	32				STAD - Stomach adenocarcinoma(35;0.19)		AGTAGCTGGGGGTGGTGGTGGTG	0.483													7	383	---	---	---	---					
RUNX2	860	broad.mit.edu	37	6	45296445	45296446	+	Frame_Shift_Ins	INS	-	-	A			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr6:45296445_45296446insA	ENST00000352853.5	+	2	186_187	c.186_187insA	c.(184-189)ctaaaafs	p.LK62fs	RUNX2_ENST00000483243.1_3'UTR|SUPT3H_ENST00000371460.1_Intron|RUNX2_ENST00000465038.2_5'UTR|RUNX2_ENST00000541979.1_Frame_Shift_Ins_p.LK62fs|SUPT3H_ENST00000306867.5_Intron|SUPT3H_ENST00000459689.1_Intron|RUNX2_ENST00000371438.1_5'UTR|SUPT3H_ENST00000371459.1_Intron			Q13950	RUNX2_HUMAN	runt-related transcription factor 2	0	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			breast(2)|endometrium(2)|kidney(1)|large_intestine(5)|liver(1)|lung(18)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	34						AGTTCTATCTGAAAAAAAAAGG	0.386													7	86	---	---	---	---					
LIPE-AS1	0	broad.mit.edu	37	19	42989130	42989130	+	RNA	DEL	T	T	-	rs76061290		TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr19:42989130delT	ENST00000594688.1	+	0	1450				LIPE-AS1_ENST00000594624.2_RNA|LIPE-AS1_ENST00000596116.1_RNA|LIPE-AS1_ENST00000593740.2_RNA|LIPE-AS1_ENST00000597203.1_RNA|LIPE-AS1_ENST00000457234.2_RNA	NR_073179.1																						tatttatttatttttttttaA	0.254													2	4	---	---	---	---					
MBOAT7	79143	broad.mit.edu	37	19	54692324	54692324	+	Frame_Shift_Del	DEL	A	A	-			TCGA-QR-A70K-01A-12D-A35D-08	TCGA-QR-A70K-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5b364e89-dcc0-4745-bbdb-815f52c81377	cb60fb86-b526-4433-8244-3174f160d475	g.chr19:54692324delA	ENST00000245615.1	-	2	519	c.39delT	c.(37-39)ctfs	p.L13fs	MBOAT7_ENST00000474910.1_Intron|MBOAT7_ENST00000338624.6_Intron|MBOAT7_ENST00000391754.1_Frame_Shift_Del_p.L13fs|MBOAT7_ENST00000431666.2_5'UTR	NM_024298.3	NP_077274.3	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain containing 7	13					phospholipid biosynthetic process	integral to membrane	acyltransferase activity			endometrium(4)|large_intestine(1)|lung(3)|prostate(1)|skin(1)	10	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GGATGGAGATAAGAAGAACCA	0.567											OREG0003643	type=REGULATORY REGION|Gene=LENG4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	2	4	---	---	---	---					
