Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZXDA	7789	broad.mit.edu	37	X	57935103	57935103	+	Silent	SNP	A	A	G			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chrX:57935103A>G	ENST00000358697.4	-	1	1964	c.1752T>C	c.(1750-1752)ctT>ctC	p.L584L		NM_007156.4	NP_009087.1	P98168	ZXDA_HUMAN	zinc finger, X-linked, duplicated A	584	Required for transcriptional activation.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(2)|endometrium(9)|kidney(1)|large_intestine(7)|lung(13)|ovary(2)|prostate(2)|skin(1)	37						TGCTGGGTGTAAGAGAATTTG	0.458000													3	55					0	0	1	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739116	15739116	+	RNA	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr19:15739116G>A	ENST00000441682.2	+	0	1181							P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F, polypeptide 8						prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(14)|skin(1)	26						CCTTAGGGACGACCTGGCCCA	0.607000													35	47					0	0	1	0	0
EPAS1	2034	broad.mit.edu	37	2	46607403	46607403	+	Missense_Mutation	SNP	C	C	T			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr2:46607403C>T	ENST00000263734.3	+	12	2102	c.1592C>T	c.(1591-1593)cCc>cTc	p.P531L		NM_001430.4	NP_001421.2	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	531	NTAD.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|liver(2)|lung(11)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	39		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			ACACTGGCACCCTATATCCCC	0.592000													51	44					0	0	1	0	0
DNAJC7	7266	broad.mit.edu	37	17	40141571	40141571	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr17:40141571T>C	ENST00000457167.4	-	7	840	c.604A>G	c.(604-606)Att>Gtt	p.I202V	DNAJC7_ENST00000316603.7_Missense_Mutation_p.I146V|DNAJC7_ENST00000426588.3_Missense_Mutation_p.I146V	NM_003315.3	NP_003306.3	Q99615	DNJC7_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 7	202					chaperone cofactor-dependent protein refolding	cytoplasm|cytoskeleton|nucleus	heat shock protein binding|unfolded protein binding			endometrium(1)|kidney(1)|large_intestine(3)|lung(3)|ovary(1)	9		all_cancers(22;0.00273)|Breast(137;0.00104)|all_epithelial(22;0.0305)				ATTCGTAGAATGTCACTGCAA	0.428000													24	75					0	0	1	0	0
PRDM9	56979	broad.mit.edu	37	5	23527470	23527470	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr5:23527470G>A	ENST00000296682.3	+	11	2455	c.2273G>A	c.(2272-2274)cGc>cAc	p.R758H		NM_020227.2	NP_064612.2	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	758					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding	p.R758H(1)		NS(1)|breast(1)|central_nervous_system(3)|endometrium(15)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(27)|lung(87)|ovary(6)|pancreas(2)|prostate(4)|skin(10)|upper_aerodigestive_tract(11)	172						CGGGGCTTTCGCGATAAGTCA	0.572000										HNSCC(3;0.000094)			5	84					0	0	1	0	0
ADCY2	108	broad.mit.edu	37	5	7766829	7766829	+	Silent	SNP	C	C	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr5:7766829C>A	ENST00000338316.4	+	17	2213	c.2124C>A	c.(2122-2124)atC>atA	p.I708I	ADCY2_ENST00000537121.1_Silent_p.I528I	NM_020546.2	NP_065433.2	Q08462	ADCY2_HUMAN	adenylate cyclase 2 (brain)	708					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			NS(3)|breast(2)|central_nervous_system(2)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(22)|lung(56)|ovary(8)|pancreas(1)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(7)	119						AGGAAACAATCCCTCCAACTG	0.393000													37	35					1.90571e-15	2.06452e-15	1	1	0
SRRM2	23524	broad.mit.edu	37	16	2815446	2815446	+	Silent	SNP	T	T	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr16:2815446T>A	ENST00000301740.8	+	11	5466	c.4917T>A	c.(4915-4917)ggT>ggA	p.G1639G		NM_016333.3	NP_057417.3	Q9UQ35	SRRM2_HUMAN	serine/arginine repetitive matrix 2	1639	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			breast(3)|central_nervous_system(1)|cervix(3)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(20)|lung(34)|ovary(6)|pancreas(3)|prostate(2)|skin(6)|upper_aerodigestive_tract(3)|urinary_tract(7)	105						GCAGATCAGGTTCATCAAGCA	0.562000													13	15					0	0	1	0	0
LINC00264	0	broad.mit.edu	37	10	26880266	26880266	+	RNA	SNP	G	G	A	rs138111133	by1000genomes	TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr10:26880266G>A	ENST00000412114.1	+	0	501					NR_026793.1																						ACCAAGCCCAGTGGACAGATG	0.443000													3	32					0	0	1	0	0
GPR128	84873	broad.mit.edu	37	3	100373746	100373746	+	Missense_Mutation	SNP	C	C	G			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr3:100373746C>G	ENST00000273352.3	+	12	1715	c.1447C>G	c.(1447-1449)Ctc>Gtc	p.L483V	GPR128_ENST00000481506.1_3'UTR|GPR128_ENST00000475887.1_Missense_Mutation_p.L188V	NM_032787.2	NP_116176.2	Q96K78	GP128_HUMAN	G protein-coupled receptor 128	483					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(1)|autonomic_ganglia(1)|breast(2)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(9)|liver(2)|lung(20)|ovary(3)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(2)	56						GATTTTCAACCTCCTCTTTGT	0.323000													20	25					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30672358	30672358	+	Silent	SNP	G	G	T			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr6:30672358G>T	ENST00000376406.3	-	10	5249	c.4602C>A	c.(4600-4602)gcC>gcA	p.A1534A	MDC1-AS1_ENST00000442150.1_RNA|MDC1_ENST00000376405.2_Silent_p.A1270A	NM_014641.2	NP_055456.2	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1534	Interaction with the PRKDC complex.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|kidney(1)|ovary(1)	4						GGAGCTCAGGGGCTGCGGGCA	0.592000								Other conserved DNA damage response genes					27	138					6.32553e-13	6.57855e-13	1	1	0
PSMC3	5702	broad.mit.edu	37	11	47444499	47444499	+	Missense_Mutation	SNP	A	A	T			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr11:47444499A>T	ENST00000298852.3	-	7	774	c.617T>A	c.(616-618)aTg>aAg	p.M206K	PSMC3_ENST00000602866.1_Missense_Mutation_p.M190K|PSMC3_ENST00000530912.1_Missense_Mutation_p.M164K	NM_002804.4	NP_002795.2	P17980	PRS6A_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 3	206					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			breast(1)|central_nervous_system(1)|kidney(1)|large_intestine(4)|lung(5)|ovary(4)|urinary_tract(1)	17				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CTTGTGGTTCATTGGCAAGAC	0.597000													4	90					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124382194	124382194	+	Silent	SNP	A	A	G	rs140021846	byFrequency	TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr8:124382194A>G	ENST00000287394.5	-	7	905	c.798T>C	c.(796-798)gaT>gaC	p.D266D	ATAD2_ENST00000521903.1_5'UTR	NM_014109.3	NP_054828.2	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	266	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(12)|lung(16)|ovary(3)|prostate(3)|skin(1)|urinary_tract(2)	48	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			cgtcatcatcatcatcatctt	0.368000													5	31					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713407	142713407	+	RNA	SNP	C	C	T	rs142431664	by1000genomes	TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr1:142713407C>T	ENST00000369381.2	-	0	1198																											CAGTAAGAAACTCATTCTTAT	0.318000													6	33					0	0	1	0	0
AHDC1	27245	broad.mit.edu	37	1	27876195	27876195	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr1:27876195G>A	ENST00000374011.2	-	6	3400	c.2432C>T	c.(2431-2433)tCa>tTa	p.S811L	AHDC1_ENST00000247087.5_Missense_Mutation_p.S811L|AHDC1_ENST00000482400.2_Intron	NM_001029882.2	NP_001025053.1	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	811	Gly-rich.						DNA binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(3)|large_intestine(8)|lung(20)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	42		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GCCACGGCCTGAGGCTCCACT	0.657000													27	23					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356467	40356467	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr4:40356467G>A	ENST00000310169.2	+	5	1509	c.1370G>A	c.(1369-1371)cGa>cAa	p.R457Q		NM_017581.3	NP_060051.2	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9 (neuronal)	457					elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(4)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(12)|ovary(1)|prostate(3)|skin(4)|stomach(1)	33					Nicotine(DB00184)	GTCATAGACCGATTCTTCATG	0.433000													22	72					0	0	1	0	0
IL4R	3566	broad.mit.edu	37	16	27357864	27357864	+	Silent	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr16:27357864G>A	ENST00000395762.2	+	6	697	c.438G>A	c.(436-438)ccG>ccA	p.P146P	IL4R_ENST00000170630.2_Silent_p.P146P|IL4R_ENST00000380922.3_Silent_p.P131P|IL4R_ENST00000449195.1_Silent_p.P146P|IL4R_ENST00000543915.2_Silent_p.P146P	NM_000418.3	NP_000409.1	P24394	IL4RA_HUMAN	interleukin 4 receptor	146	Fibronectin type-III.				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			breast(3)|endometrium(2)|kidney(2)|large_intestine(2)|lung(15)|ovary(2)|prostate(2)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)	33						GGAGCAACCCGTATCCCCCTG	0.522000													3	51					0	0	1	0	0
ZNF844	284391	broad.mit.edu	37	19	12187394	12187394	+	Missense_Mutation	SNP	T	T	C			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr19:12187394T>C	ENST00000439326.3	+	4	1634	c.1459T>C	c.(1459-1461)Ttt>Ctt	p.F487L	ZNF844_ENST00000441304.2_3'UTR	NM_001136501.1	NP_001129973.1	Q08AG5	ZN844_HUMAN	zinc finger protein 844	487					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.F487L(1)		NS(1)|breast(2)|central_nervous_system(1)|endometrium(2)|kidney(2)|lung(1)|prostate(1)	10						GCCTTCATTTTTTCCACTTCC	0.448000													3	48					0	0	1	0	0
CHEK2P2	0	broad.mit.edu	37	15	20496630	20496630	+	RNA	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr15:20496630G>A	ENST00000555186.1	+	0	683					NR_038836.1																						TCATGAAGGGGAAGCCGAGGG	0.438000													7	70					0	0	1	0	0
OSBPL6	114880	broad.mit.edu	37	2	179196280	179196280	+	Splice_Site	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr2:179196280G>A	ENST00000190611.4	+	6	696	c.318_splice	c.e6-1	p.R107_splice	OSBPL6_ENST00000409631.1_Splice_Site_p.R107_splice|OSBPL6_ENST00000357080.4_Splice_Site_p.R107_splice|OSBPL6_ENST00000477097.1_3'UTR|OSBPL6_ENST00000409045.3_Splice_Site_p.R107_splice|OSBPL6_ENST00000392505.2_Splice_Site_p.R107_splice|OSBPL6_ENST00000315022.2_Splice_Site_p.R86_splice|OSBPL6_ENST00000359685.3_Splice_Site_p.R107_splice	NM_032523.3	NP_115912.1	Q9BZF3	OSBL6_HUMAN	oxysterol binding protein-like 6	107	PH.				lipid transport		lipid binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(13)|lung(18)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	46			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TTCTTGCAGCGTTTTTTTGTC	0.363000													4	108					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr9:20414340G>A	ENST00000380338.4	-	5	790	c.504C>T	c.(502-504)agC>agT	p.S168S	MLLT3_ENST00000355930.6_5'UTR|MLLT3_ENST00000475957.1_5'UTR|MLLT3_ENST00000429426.2_Silent_p.S165S	NM_004529.2	NP_004520.2	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	168	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding	p.S168S(5)		central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7)	66				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctgctactgctgc	0.537000			T	MLL	ALL								4	68					0	0	1	0	0
SLC38A6	145389	broad.mit.edu	37	14	61486268	61486268	+	Missense_Mutation	SNP	G	G	A			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr14:61486268G>A	ENST00000354886.2	+	5	537	c.373G>A	c.(373-375)Gca>Aca	p.A125T	SLC38A6_ENST00000456840.2_Missense_Mutation_p.A102T|SLC38A6_ENST00000267488.4_Missense_Mutation_p.A125T	NM_001172702.1	NP_001166173.1	Q8IZM9	S38A6_HUMAN	solute carrier family 38, member 6	125					amino acid transport|sodium ion transport	integral to membrane				central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|liver(2)|lung(5)|ovary(1)|skin(3)|stomach(1)|urinary_tract(1)	21				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		GTTGGTGGTGGCAGGCACCAT	0.308000													5	71					0	0	1	0	0
SAMD11	148398	broad.mit.edu	37	1	865539	865539	+	Frame_Shift_Del	DEL	G	G	-			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr1:865539delG	ENST00000342066.3	+	3	160	c.77delG	c.(76-78)cgfs	p.R26fs	AL645608.1_ENST00000598827.1_Intron	NM_152486.2	NP_689699.2	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	26						nucleus				breast(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(2)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	15	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		caccAGAACCGGGGGCGGCTG	0.672													2	4	---	---	---	---					
STAG3L2	0	broad.mit.edu	37	7	74300557	74300564	+	RNA	DEL	AGAGCTCC	AGAGCTCC	-			TCGA-QR-A7IN-01A-11D-A35D-08	TCGA-QR-A7IN-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	35c48d5c-7531-461c-886e-73c8c87b546f	7660362a-4837-4486-bd62-f508247ef5e2	g.chr7:74300557_74300564delAGAGCTCC	ENST00000423186.1	-	0	573_580							P0CL84	ST3L2_HUMAN								nucleus	binding	p.E82fs*32(2)		breast(1)|central_nervous_system(1)|large_intestine(1)|lung(1)|pancreas(1)	5						CGGCCAGTGAAGAGCTCCAGGCGTGCGG	0.572													4	4	---	---	---	---					
