Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PUM2	23369	broad.mit.edu	37	2	20463176	20463176	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr2:20463176C>T	ENST00000361078.2	-	13	2025	c.2003G>A	c.(2002-2004)gGa>gAa	p.G668E	PUM2_ENST00000338086.5_Missense_Mutation_p.G668E|PUM2_ENST00000319801.5_Missense_Mutation_p.G589E|PUM2_ENST00000403432.1_Missense_Mutation_p.G668E|PUM2_ENST00000536417.1_Missense_Mutation_p.G612E			Q8TB72	PUM2_HUMAN	pumilio RNA-binding family member 2	668	Ser-rich.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			breast(2)|central_nervous_system(1)|endometrium(6)|kidney(4)|large_intestine(7)|lung(13)|ovary(2)|prostate(4)|urinary_tract(3)	42	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCTTCTGCTCCAGGTGCTGC	0.443000													43	63					0	0	1	0	0
PADI1	29943	broad.mit.edu	37	1	17548858	17548858	+	Missense_Mutation	SNP	C	C	T	rs142259163		TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr1:17548858C>T	ENST00000375471.4	+	2	258	c.166C>T	c.(166-168)Cgc>Tgc	p.R56C		NM_013358.2	NP_037490.2	Q9ULC6	PADI1_HUMAN	peptidyl arginine deiminase, type I	56					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity	p.R56C(1)		haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(14)|ovary(1)|prostate(4)|skin(1)|stomach(1)|urinary_tract(1)	28		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	GGTCTACAACCGCACACGTGT	0.552000													6	33					0	0	1	0	0
COL4A6	1288	broad.mit.edu	37	X	107413898	107413898	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chrX:107413898G>A	ENST00000334504.7	-	35	3667	c.3434C>T	c.(3433-3435)tCt>tTt	p.S1145F	COL4A6_ENST00000538570.1_Missense_Mutation_p.S1145F|COL4A6_ENST00000394872.2_Missense_Mutation_p.S1146F|COL4A6_ENST00000372216.4_Missense_Mutation_p.S1146F|COL4A6_ENST00000545689.1_Missense_Mutation_p.S1145F	NM_033641.2	NP_378667.1	Q14031	CO4A6_HUMAN	collagen, type IV, alpha 6	1146	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			breast(2)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(20)|lung(41)|ovary(7)|prostate(1)|skin(1)|stomach(1)|urinary_tract(2)	92						GTGACCAGAAGAACCTGGAAG	0.512000									Alport syndrome with Diffuse Leiomyomatosis				5	153					0	0	1	0	0
RPS12	6206	broad.mit.edu	37	6	133138155	133138155	+	Silent	SNP	G	G	A	rs1052683		TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr6:133138155G>A	ENST00000230050.3	+	5	501	c.291G>A	c.(289-291)gaG>gaA	p.E97E		NM_001016.3	NP_001007.2	P25398	RS12_HUMAN	ribosomal protein S12	97					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	structural constituent of ribosome			endometrium(1)|kidney(13)|lung(3)|urinary_tract(1)	18	Breast(56;0.214)			OV - Ovarian serous cystadenocarcinoma(155;0.00284)|GBM - Glioblastoma multiforme(226;0.0256)		TTGACAGAGAGGGGAAACCCC	0.373000													3	38					0	0	1	0	0
C12orf45	121053	broad.mit.edu	37	12	105385571	105385571	+	Missense_Mutation	SNP	C	C	G			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr12:105385571C>G	ENST00000552951.1	+	3	327	c.284C>G	c.(283-285)cCt>cGt	p.P95R	C12orf45_ENST00000280749.5_Intron	NM_152318.2	NP_689531.2	Q8N5I9	CL045_HUMAN	chromosome 12 open reading frame 45	95										large_intestine(1)|lung(2)	3						GCTGCACCACCTGGTCGTTTC	0.403000													8	62					0	0	1	0	0
C17orf66	256957	broad.mit.edu	37	17	34182738	34182738	+	Missense_Mutation	SNP	C	C	T	rs115744817	byFrequency	TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr17:34182738C>T	ENST00000311880.2	-	14	1443	c.1295G>A	c.(1294-1296)cGc>cAc	p.R432H	C17orf66_ENST00000592980.1_Missense_Mutation_p.R392H	NM_152781.2	NP_689994.2	A2RTY3	CQ066_HUMAN	chromosome 17 open reading frame 66	432							binding			breast(3)|central_nervous_system(1)|cervix(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(6)|lung(11)|skin(2)|stomach(4)	38		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		TTGTGGACTGCGGATCCCCAG	0.532000													3	41					0	0	1	0	0
PGAM4	441531	broad.mit.edu	37	X	77224418	77224418	+	Missense_Mutation	SNP	A	A	G			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chrX:77224418A>G	ENST00000458128.1	-	1	717	c.718T>C	c.(718-720)Tgc>Cgc	p.C240R	ATP7A_ENST00000350425.4_Intron|ATP7A_ENST00000343533.5_Intron|ATP7A_ENST00000341514.6_Intron	NM_001029891.2	NP_001025062.1	Q8N0Y7	PGAM4_HUMAN	phosphoglycerate mutase family member 4	240					glycolysis		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity	p.C240R(1)		endometrium(2)|lung(4)	6						ATGGCTTTGCACACCGTCTCT	0.562000													4	97					0	0	1	0	0
NPIPB6	728741	broad.mit.edu	37	16	28354353	28354353	+	Missense_Mutation	SNP	T	T	G	rs1794256	by1000genomes	TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr16:28354353T>G	ENST00000532254.1	-	7	1538	c.853A>C	c.(853-855)Act>Cct	p.T285P	NPIPB6_ENST00000533640.1_Missense_Mutation_p.T267P					nuclear pore complex interacting protein family, member B6									p.T285P(4)									AGACACTCAGTAGGTGTCTTG	0.507000													3	26					0	0	1	0	0
SZT2	23334	broad.mit.edu	37	1	43905438	43905438	+	Nonsense_Mutation	SNP	C	C	G			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr1:43905438C>G	ENST00000562955.1	+	49	6869	c.6869C>G	c.(6868-6870)tCa>tGa	p.S2290*	SZT2_ENST00000372442.1_Nonsense_Mutation_p.S1448*	NM_015284.3	NP_056099.3	Q5T011	SZT2_HUMAN	seizure threshold 2 homolog (mouse)	2347						peroxisome				NS(2)|breast(9)|central_nervous_system(1)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(19)|lung(39)|ovary(4)|pancreas(3)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	113						GACAGTTCTTCAGGTGGGACA	0.587000													14	4					0	0	1	0	0
SHISA2	387914	broad.mit.edu	37	13	26621012	26621012	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr13:26621012G>A	ENST00000319420.3	-	2	582	c.527C>T	c.(526-528)tCg>tTg	p.S176L		NM_001007538.1	NP_001007539.1	Q6UWI4	SHSA2_HUMAN	shisa family member 2	176					multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(7)|ovary(1)|prostate(2)|skin(1)	17						GCGTGAGGACGACCCCCGGGA	0.667000													35	38					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179430601	179430601	+	Missense_Mutation	SNP	T	T	C			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr2:179430601T>C	ENST00000589042.1	-	326	80482	c.80258A>G	c.(80257-80259)tAt>tGt	p.Y26753C	TTN_ENST00000591111.1_Missense_Mutation_p.Y25112C|TTN-AS1_ENST00000590807.1_RNA|TTN-AS1_ENST00000590932.1_RNA|TTN_ENST00000359218.5_Missense_Mutation_p.Y17813C|TTN_ENST00000342992.6_Missense_Mutation_p.Y24185C|TTN_ENST00000342175.6_Missense_Mutation_p.Y17880C|TTN-AS1_ENST00000586831.1_RNA|TTN-AS1_ENST00000438095.1_RNA|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000592689.1_RNA|TTN-AS1_ENST00000592600.1_RNA|TTN-AS1_ENST00000591332.1_RNA|TTN-AS1_ENST00000456053.1_RNA|TTN_ENST00000460472.2_Missense_Mutation_p.Y17688C|TTN-AS1_ENST00000419746.1_RNA|TTN-AS1_ENST00000586452.1_RNA|TTN-AS1_ENST00000585451.1_RNA|TTN-AS1_ENST00000586707.1_RNA|TTN-AS1_ENST00000592750.1_RNA	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	25112	Ig-like 128.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGAAGTAATAAATGGCTCC	0.418000													12	123					0	0	1	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr1:16918653C>T	ENST00000430580.2	-	6	853		c.e6+1			NM_017940.3	NP_060410.2	Q3BBV0	NBPF1_HUMAN	neuroblastoma breakpoint family, member 1							cytoplasm									UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													6	26					0	0	1	0	0
AIFM1	9131	broad.mit.edu	37	X	129265714	129265714	+	Silent	SNP	G	G	A			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chrX:129265714G>A	ENST00000287295.3	-	14	1739	c.1509C>T	c.(1507-1509)ccC>ccT	p.P503P	AIFM1_ENST00000346424.2_Silent_p.P216P|AIFM1_ENST00000319908.3_Silent_p.P499P|AIFM1_ENST00000460436.2_Silent_p.P164P|AIFM1_ENST00000440263.1_Silent_p.P151P|AIFM1_ENST00000535724.1_3'UTR	NM_001130847.3|NM_004208.3	NP_001124319.1|NP_004199.1	O95831	AIFM1_HUMAN	apoptosis-inducing factor, mitochondrion-associated, 1	503					activation of caspase activity|apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytosol|mitochondrial inner membrane|mitochondrial intermembrane space|nucleus|perinuclear region of cytoplasm	DNA binding|electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			central_nervous_system(1)|endometrium(5)|kidney(3)|large_intestine(4)|liver(2)|lung(8)|ovary(4)|prostate(2)|urinary_tract(1)	30						CACCAACTGTGGGCAAACTAC	0.478000													11	175					0	0	1	0	0
KIAA0556	23247	broad.mit.edu	37	16	27752044	27752044	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr16:27752044G>A	ENST00000261588.4	+	15	2445	c.2426G>A	c.(2425-2427)cGg>cAg	p.R809Q		NM_015202.2	NP_056017.2	O60303	K0556_HUMAN	KIAA0556	809										breast(4)|endometrium(7)|kidney(8)|large_intestine(17)|lung(24)|ovary(5)|prostate(3)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(3)	76						AAAGGCCTACGGCATGAGCCA	0.597000													15	19					0	0	1	0	0
SPDYA	245711	broad.mit.edu	37	2	29072796	29072796	+	Missense_Mutation	SNP	A	A	C			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr2:29072796A>C	ENST00000334056.5	+	8	1120	c.931A>C	c.(931-933)Agt>Cgt	p.S311R	SPDYA_ENST00000379579.4_Missense_Mutation_p.S311R|TRMT61B_ENST00000306108.5_3'UTR	NM_182756.3	NP_877433.2	Q5MJ70	SPDYA_HUMAN	speedy/RINGO cell cycle regulator family member A	311					G1/S transition of mitotic cell cycle|multicellular organismal development|positive regulation of cell proliferation|response to DNA damage stimulus	nucleus	protein kinase binding			cervix(1)|endometrium(1)|large_intestine(2)|lung(1)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(172;0.155)					GTTTACAGGAAGTGAAGAATG	0.323000													16	26					0	0	1	0	0
WDR20	91833	broad.mit.edu	37	14	102675248	102675248	+	Missense_Mutation	SNP	C	C	G			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr14:102675248C>G	ENST00000335263.5	+	3	821	c.741C>G	c.(739-741)ttC>ttG	p.F247L	WDR20_ENST00000342702.3_Missense_Mutation_p.F247L|WDR20_ENST00000556807.1_Missense_Mutation_p.F186L|WDR20_ENST00000556511.2_Missense_Mutation_p.F186L|WDR20_ENST00000299135.6_3'UTR|WDR20_ENST00000545563.1_Missense_Mutation_p.F74L|WDR20_ENST00000499851.2_5'UTR|WDR20_ENST00000454394.2_Missense_Mutation_p.F278L|WDR20_ENST00000424963.2_Missense_Mutation_p.F123L|WDR20_ENST00000322340.5_Intron	NM_181291.2	NP_851808.1	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20	247										breast(1)|large_intestine(2)|lung(4)|prostate(1)	8						TGCGGGTGTTCAACTTTGACT	0.567000													21	23					0	0	1	0	0
RAB11B	9230	broad.mit.edu	37	19	8464766	8464766	+	Silent	SNP	A	A	G			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr19:8464766A>G	ENST00000328024.6	+	2	278	c.60A>G	c.(58-60)tcA>tcG	p.S20S	RAB11B_ENST00000601897.1_Intron|RAB11B_ENST00000594216.1_Silent_p.S20S	NM_004218.3	NP_004209.2	Q15907	RB11B_HUMAN	RAB11B, member RAS oncogene family	20					cell cycle|protein transport|small GTPase mediated signal transduction	plasma membrane	GDP binding|GTP binding|GTPase activity			large_intestine(2)|lung(1)|ovary(1)	4						TCGGGGACTCAGGCGTGGGCA	0.647000													3	21					0	0	1	0	0
ADO	84890	broad.mit.edu	37	10	64565028	64565028	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr10:64565028C>T	ENST00000373783.1	+	1	513	c.209C>T	c.(208-210)cCg>cTg	p.P70L	RP11-436D10.3_ENST00000425290.1_RNA	NM_032804.5	NP_116193.2	Q96SZ5	AEDO_HUMAN	2-aminoethanethiol (cysteamine) dioxygenase	70							cysteamine dioxygenase activity|metal ion binding			lung(2)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					AACATCGCCCCGCGCAAGGCC	0.672000													3	20					0	0	1	0	0
SIRPA	140885	broad.mit.edu	37	20	1902301	1902301	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr20:1902301G>A	ENST00000358771.4	+	3	849	c.697G>A	c.(697-699)Gtc>Atc	p.V233I	SIRPA_ENST00000400068.3_Missense_Mutation_p.V233I|SIRPA_ENST00000356025.3_Missense_Mutation_p.V233I	NM_001040023.1	NP_001035112.1	P78324	SHPS1_HUMAN	signal-regulatory protein alpha	233	Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding	p.V233I(1)		cervix(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(13)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	21				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		GGTGGCCCACGTCACCTTGCA	0.617000													3	53					0	0	1	0	0
DHX37	57647	broad.mit.edu	37	12	125450247	125450247	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr12:125450247C>T	ENST00000308736.2	-	13	1800	c.1702G>A	c.(1702-1704)Gat>Aat	p.D568N	DHX37_ENST00000544745.1_Missense_Mutation_p.D355N	NM_032656.3	NP_116045.2	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	568	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			breast(5)|cervix(1)|endometrium(9)|kidney(5)|large_intestine(11)|liver(1)|lung(27)|ovary(1)|prostate(2)|skin(3)	65	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		AGGTCCAGATCGAGGTCGGAG	0.597000													10	13					0	0	1	0	0
AC074391.1	0	broad.mit.edu	37	2	65738863	65738863	+	RNA	DEL	G	G	-			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr2:65738863delG	ENST00000377977.3	+	0	862																											TTTTTTTTTTGTCCAGGAGGC	0.303													3	6	---	---	---	---					
RP11-276H19.2	0	broad.mit.edu	37	9	89628124	89628125	+	RNA	INS	-	-	A	rs35998235		TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr9:89628124_89628125insA	ENST00000602579.1	-	0	256					NR_027471.1																						TGTCTCCCTTCAAAAAAAAAAA	0.366													4	3	---	---	---	---					
UBR7	55148	broad.mit.edu	37	14	93673726	93673726	+	Frame_Shift_Del	DEL	G	G	-			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr14:93673726delG	ENST00000013070.6	+	1	326	c.90delG	c.(88-90)ctfs	p.L30fs	RP11-371E8.4_ENST00000557574.1_Intron|RP11-371E8.4_ENST00000557048.1_Intron|UBR7_ENST00000416753.1_5'UTR	NM_175748.3	NP_786924.2	Q8N806	UBR7_HUMAN	ubiquitin protein ligase E3 component n-recognin 7 (putative)	30							ubiquitin-protein ligase activity|zinc ion binding			breast(2)|endometrium(2)|large_intestine(2)|lung(12)|urinary_tract(1)	19						ACGAGGAGCTGGAGAATGAGG	0.706											OREG0022885	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
SNHG14	0	broad.mit.edu	37	15	25470450	25470452	+	RNA	DEL	GGA	GGA	-			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr15:25470450_25470452delGGA	ENST00000453082.2	+	0	1061					NR_003343.1																						TGAGAATTTTGGAGGAGGACACT	0.493													22	191	---	---	---	---					
USP3-AS1	0	broad.mit.edu	37	15	63889523	63889523	+	RNA	DEL	C	C	-			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr15:63889523delC	ENST00000560962.1	-	0	548				USP3-AS1_ENST00000558831.1_RNA|USP3-AS1_ENST00000560622.1_RNA|USP3-AS1_ENST00000561256.1_RNA|USP3-AS1_ENST00000561191.1_RNA|USP3-AS1_ENST00000559737.1_RNA																							CCATATATGTCCACCGGCCCA	0.572													2	4	---	---	---	---					
TNFSF12-TNFSF13	0	broad.mit.edu	37	17	7452625	7452626	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-RW-A67V-01A-11D-A35D-08	TCGA-RW-A67V-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d177db6-8f67-47e6-9cd7-9a7d8e3465e1	da931eb3-5bef-4845-a09f-67095468917e	g.chr17:7452625_7452626delCC	ENST00000293826.4	+	1	210_211	c.155_156delCC	c.(154-156)gfs	p.A52fs	TNFSF12_ENST00000557233.1_Frame_Shift_Del_p.A52fs|TNFSF12_ENST00000293825.6_Frame_Shift_Del_p.A52fs	NM_172089.3	NP_742086.1	Q8IZK7	Q8IZK7_HUMAN		52					immune response	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)|large_intestine(2)	3		Prostate(122;0.157)				TCGCTGTCCGCCCAGGTGAGGC	0.733													2	4	---	---	---	---					
