Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SEMG1	6406	broad.mit.edu	37	20	43836817	43836817	+	Silent	SNP	A	A	G	rs17850164		TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr20:43836817A>G	ENST00000372781.3	+	2	936	c.879A>G	c.(877-879)acA>acG	p.T293T	SEMG1_ENST00000244069.6_Intron	NM_003007.3	NP_002998.1			semenogelin I									p.T293T(2)		cervix(1)|endometrium(2)|kidney(3)|large_intestine(3)|liver(1)|lung(12)|prostate(1)|skin(6)|stomach(2)|urinary_tract(1)	32		Myeloproliferative disorder(115;0.0122)				CTTCAAGTACAGAAGAAAGAC	0.383000													4	80					0	0	1	0	0
SRGAP2	23380	broad.mit.edu	37	1	206566110	206566110	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr1:206566110C>T	ENST00000414007.1	+	2	131	c.131C>T	c.(130-132)gCg>gTg	p.A44V	SRGAP2_ENST00000419187.2_5'UTR			O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	184	FCH.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			NS(1)|breast(1)|kidney(1)|lung(1)	4	Breast(84;0.137)					CTAAAGGAGGCGGAGAAGCAG	0.557000													4	39					0	0	1	0	0
DDX3X	1654	broad.mit.edu	37	X	41205821	41205821	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chrX:41205821G>A	ENST00000399959.2	+	14	2416	c.1561G>A	c.(1561-1563)Gat>Aat	p.D521N	DDX3X_ENST00000457138.2_Missense_Mutation_p.D505N|DDX3X_ENST00000441189.2_Intron|DDX3X_ENST00000478993.1_3'UTR	NM_001193416.1|NM_001193417.1|NM_001356.3	NP_001180345.1|NP_001180346.1|NP_001347.3	O00571	DDX3X_HUMAN	DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked	521	Helicase C-terminal.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			NS(3)|breast(8)|central_nervous_system(36)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(4)|kidney(3)|large_intestine(3)|lung(7)|ovary(2)|pancreas(1)|prostate(3)|skin(2)|upper_aerodigestive_tract(4)|urinary_tract(1)	84						CTTGCCAAGTGATATTGAAGA	0.363000										HNSCC(61;0.18)			5	147					0	0	1	0	0
RP11-248G5.8	0	broad.mit.edu	37	13	52864001	52864001	+	RNA	SNP	A	A	G			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr13:52864001A>G	ENST00000451298.1	-	0	168				RP11-64P12.8_ENST00000606031.1_RNA																							GAAAAAATAAAGCAATAGCTA	0.313000													3	43					0	0	1	0	0
EPB41	2035	broad.mit.edu	37	1	29365807	29365807	+	Missense_Mutation	SNP	C	C	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr1:29365807C>A	ENST00000343067.4	+	11	1632	c.1505C>A	c.(1504-1506)gCg>gAg	p.A502E	EPB41_ENST00000347529.3_Missense_Mutation_p.A467E|EPB41_ENST00000398863.2_Missense_Mutation_p.A502E|EPB41_ENST00000373797.1_Missense_Mutation_p.A502E|EPB41_ENST00000373798.1_Missense_Mutation_p.A502E|EPB41_ENST00000373800.3_Missense_Mutation_p.A293E|EPB41_ENST00000356093.2_Missense_Mutation_p.A502E|EPB41_ENST00000349460.4_Missense_Mutation_p.A293E	NM_001166005.1	NP_001159477.1	P11171	41_HUMAN	erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	502	Hydrophilic.				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			NS(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(3)|ovary(2)|urinary_tract(1)	14		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		AAATTTCTTGCGCTAGGATCC	0.428000													16	70					1.02788e-11	1.06333e-11	1	1	0
IGSF9B	22997	broad.mit.edu	37	11	133790306	133790306	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr11:133790306C>T	ENST00000321016.8	-	18	3544	c.3314G>A	c.(3313-3315)gGc>gAc	p.G1105D	IGSF9B_ENST00000533871.2_Missense_Mutation_p.G1105D			Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1105	Pro-rich.					integral to membrane|plasma membrane				breast(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(18)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	44	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GGGCGACTTGCCTGCCCAACC	0.706000													3	45					0	0	1	0	0
HLA-V	0	broad.mit.edu	37	6	29761676	29761676	+	RNA	SNP	C	C	G			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr6:29761676C>G	ENST00000457107.1	+	0	902																											gagagggtttcatattcaaga	0.493000													4	23					0	0	1	0	0
FHDC1	85462	broad.mit.edu	37	4	153884185	153884185	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr4:153884185C>T	ENST00000511601.1	+	8	1120	c.932C>T	c.(931-933)gCc>gTc	p.A311V	FHDC1_ENST00000260008.3_Missense_Mutation_p.A311V			Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	311	FH2.				actin cytoskeleton organization		actin binding		ARFIP1/FHDC1(2)	NS(2)|breast(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(7)|liver(2)|lung(14)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	43	all_hematologic(180;0.093)					GGAGGGTATGCCGGCAATGCA	0.403000													4	173					0	0	1	0	0
ZNF28	7576	broad.mit.edu	37	19	53303977	53303977	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr19:53303977C>T	ENST00000438150.2	-	2	1855	c.962G>A	c.(961-963)cGt>cAt	p.R321H	ZNF28_ENST00000457749.2_Missense_Mutation_p.R374H|ZNF28_ENST00000414252.2_Missense_Mutation_p.R321H|ZNF28_ENST00000360272.4_Missense_Mutation_p.R321H			P17035	ZNF28_HUMAN	zinc finger protein 28	374					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(11)|liver(1)|lung(10)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	34				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		ATGAAGCCTACGATGGCGTGC	0.383000													4	172					0	0	1	0	0
DEPDC5	9681	broad.mit.edu	37	22	32200859	32200859	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr22:32200859G>A	ENST00000400246.1	+	17	1317	c.1175G>A	c.(1174-1176)cGt>cAt	p.R392H	DEPDC5_ENST00000400249.2_Missense_Mutation_p.R392H|DEPDC5_ENST00000535622.1_Missense_Mutation_p.R392H|DEPDC5_ENST00000382111.2_Missense_Mutation_p.R392H|DEPDC5_ENST00000400248.1_Missense_Mutation_p.R392H|DEPDC5_ENST00000536766.1_Missense_Mutation_p.R364H|DEPDC5_ENST00000382112.3_Missense_Mutation_p.R392H|DEPDC5_ENST00000400242.3_Missense_Mutation_p.R392H|DEPDC5_ENST00000266091.3_Missense_Mutation_p.R392H|DEPDC5_ENST00000382105.2_Missense_Mutation_p.R392H			O75140	DEPD5_HUMAN	DEP domain containing 5	392					intracellular signal transduction					breast(1)|central_nervous_system(5)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|lung(24)|ovary(5)|pancreas(2)|prostate(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	63						CGTGATTCTCGTCTGGGCGAT	0.453000													4	178					0	0	1	0	0
TUBB8P7	0	broad.mit.edu	37	16	90162172	90162172	+	RNA	SNP	T	T	C			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr16:90162172T>C	ENST00000567960.1	+	0	908				TUBB8P7_ENST00000564451.1_RNA																							GATGGCTGCCTGTGACCCCCG	0.567000													5	146					0	0	1	0	0
USP6	9098	broad.mit.edu	37	17	5074086	5074086	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr17:5074086G>A	ENST00000574788.1	+	36	6060	c.3830G>A	c.(3829-3831)tGt>tAt	p.C1277Y	USP6_ENST00000304328.5_Missense_Mutation_p.C960Y|USP6_ENST00000250066.6_Missense_Mutation_p.C1277Y|USP6_ENST00000332776.4_3'UTR			P35125	UBP6_HUMAN	ubiquitin specific peptidase 6 (Tre-2 oncogene)	1277					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(4)|lung(15)|ovary(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	34						CATGAAGCATGTGGCAATGGC	0.522000			T	"""COL1A1, CDH11, ZNF9, OMD"""	aneurysmal bone cysts								5	93					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38958370	38958370	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr19:38958370G>A	ENST00000355481.4	+	25	3430	c.3299G>A	c.(3298-3300)cGc>cAc	p.R1100H	RYR1_ENST00000360985.3_Missense_Mutation_p.R1100H|RYR1_ENST00000359596.3_Missense_Mutation_p.R1100H	NM_000540.2|NM_001042723.1	NP_000531.2|NP_001036188.1	P21817	RYR1_HUMAN	ryanodine receptor 1 (skeletal)	1100	6 X approximate repeats.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGCGAGATGCGCGTGGGCTGG	0.627000													12	73					0	0	1	0	0
NOC3L	64318	broad.mit.edu	37	10	96112725	96112725	+	Silent	SNP	C	C	G			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr10:96112725C>G	ENST00000371361.3	-	7	886	c.786G>C	c.(784-786)ctG>ctC	p.L262L	NOC3L_ENST00000463649.1_5'UTR|NOC3L_ENST00000371350.1_Silent_p.L262L|NOC3L_ENST00000543788.1_5'UTR	NM_022451.9	NP_071896.8	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog (S. cerevisiae)	262						nuclear speck|nucleolus	binding			endometrium(3)|large_intestine(17)|lung(5)|ovary(1)|skin(2)|stomach(1)	29		Colorectal(252;0.0897)				ATAACTCCATCAGAGAAACAA	0.333000													4	242					0	0	1	0	0
LYST	1130	broad.mit.edu	37	1	235969125	235969125	+	Missense_Mutation	SNP	C	C	T	rs148299757	by1000genomes	TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr1:235969125C>T	ENST00000389794.3	-	6	3485	c.3311G>A	c.(3310-3312)cGa>cAa	p.R1104Q	LYST_ENST00000389793.2_Missense_Mutation_p.R1104Q|LYST_ENST00000536965.1_Missense_Mutation_p.R1104Q			Q99698	LYST_HUMAN	lysosomal trafficking regulator	1104					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			NS(1)|breast(13)|central_nervous_system(3)|cervix(3)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(27)|lung(66)|ovary(7)|pancreas(1)|prostate(4)|skin(4)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1)	162	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TTCCAAAAGTCGTATACTTTG	0.428000													34	51					0	0	1	0	0
MLKL	197259	broad.mit.edu	37	16	74725330	74725330	+	Silent	SNP	C	C	T			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr16:74725330C>T	ENST00000308807.7	-	4	1030	c.567G>A	c.(565-567)ccG>ccA	p.P189P	MLKL_ENST00000306247.7_Intron	NM_152649.2	NP_689862.1	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like	189							ATP binding|protein binding|protein kinase activity			breast(1)|endometrium(2)|kidney(2)|large_intestine(3)|liver(2)|lung(6)|skin(1)|stomach(2)	19						TTTGCTCTTGCGGGATCTCCT	0.478000													8	245					0	0	1	0	0
RGPD8	727851	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	G	C			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr2:113127775G>C	ENST00000302558.3	-	23	5469	c.5278C>G	c.(5278-5280)Cct>Gct	p.P1760A	RGPD8_ENST00000409750.1_Missense_Mutation_p.P1620A	NM_001164463.1	NP_001157935.1			RANBP2-like and GRIP domain containing 8									p.P1760A(12)		endometrium(4)|kidney(1)|lung(1)|prostate(3)|urinary_tract(1)	10						GAACGGGAAGGATTTTCTTCC	0.308000													3	44					0	0	1	0	0
MMP15	4324	broad.mit.edu	37	16	58077523	58077523	+	Missense_Mutation	SNP	A	A	G			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr16:58077523A>G	ENST00000219271.3	+	9	2347	c.1562A>G	c.(1561-1563)aAt>aGt	p.N521S		NM_002428.2	NP_002419.1	P51511	MMP15_HUMAN	matrix metallopeptidase 15 (membrane-inserted)	521	Hemopexin-like 4.				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(4)|large_intestine(4)|lung(3)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1)	18						TTCCTGAGCAATGACGCAGGT	0.627000													8	11					0	0	1	0	0
PCDHA1	0	broad.mit.edu	37	5	140167494	140167494	+	Missense_Mutation	SNP	C	C	T			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr5:140167494C>T	ENST00000504120.2	+	1	1619	c.1619C>T	c.(1618-1620)gCg>gTg	p.A540V	PCDHA1_ENST00000378133.3_Missense_Mutation_p.A540V|PCDHA1_ENST00000394633.3_Intron	NM_018900.2	NP_061723.1														breast(3)|endometrium(3)|kidney(2)|large_intestine(13)|lung(34)|prostate(3)|skin(4)|upper_aerodigestive_tract(5)|urinary_tract(3)	70			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCGGGATGCGGGCGTGCCG	0.682000													5	160					0	0	1	0	0
RP11-248G5.8	0	broad.mit.edu	37	13	52864053	52864053	+	RNA	SNP	T	T	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr13:52864053T>A	ENST00000451298.1	-	0	116				RP11-64P12.8_ENST00000606031.1_RNA																							AACTTTGCTATCAGTGAAAAT	0.308000													3	34					0	0	1	0	0
ILDR1	286676	broad.mit.edu	37	3	121720708	121720708	+	Missense_Mutation	SNP	G	G	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr3:121720708G>A	ENST00000273691.3	-	4	488	c.383C>T	c.(382-384)gCa>gTa	p.A128V	ILDR1_ENST00000393631.1_Intron|ILDR1_ENST00000344209.5_Missense_Mutation_p.A128V|ILDR1_ENST00000460554.1_5'UTR|ILDR1_ENST00000462014.1_Missense_Mutation_p.A140V	NM_175924.3	NP_787120.1	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor 1	128	Ig-like V-type.					cytosol|integral to membrane|plasma membrane	receptor activity			central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(10)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	25				GBM - Glioblastoma multiforme(114;0.156)		CACGAGATCTGCTCCTACACA	0.517000													16	34					0	0	1	0	0
ERG	2078	broad.mit.edu	37	21	39817410	39817410	+	Silent	SNP	G	G	A			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr21:39817410G>A	ENST00000442448.1	-	4	445	c.174C>T	c.(172-174)gtC>gtT	p.V58V	ERG_ENST00000429727.2_Silent_p.V51V|ERG_ENST00000398911.1_Silent_p.V58V|ERG_ENST00000398919.2_Silent_p.V58V|ERG_ENST00000417133.2_Silent_p.V58V|ERG_ENST00000398907.1_Silent_p.V51V|ERG_ENST00000398897.1_Intron|ERG_ENST00000453032.2_Intron|ERG_ENST00000398910.1_Silent_p.V58V|ERG_ENST00000398905.1_Silent_p.V51V|ERG_ENST00000288319.7_Silent_p.V51V	NM_004449.4	NP_004440.1	P11308	ERG_HUMAN	v-ets avian erythroblastosis virus E26 oncogene homolog	58					cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		EWSR1/ERG(178)|NDRG1/ERG(5)|TMPRSS2/ERG(3582)|FUS/ERG(167)|SLC45A3/ERG(50)	lung(2)|ovary(1)|skin(1)	4		Prostate(19;3.6e-06)				CCTGCTGAGGGACGCGTGGGC	0.562000			T	"""EWSR1, TMPRSS2, ELF4, FUS, HERPUD1, NDRG1"""	"""Ewing sarcoma, prostate, AML"""								8	65					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10699541	10699541	+	Frame_Shift_Del	DEL	G	G	-			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr1:10699541delG	ENST00000377022.3	-	21	5055	c.4738delC	c.(4738-4740)acfs	p.H1580fs	RP4-734G22.3_ENST00000606802.1_RNA	NM_001079843.1	NP_001073312.1	Q86V15	CASZ1_HUMAN	castor zinc finger 1	1580					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(9)|large_intestine(13)|lung(18)|ovary(2)|prostate(5)|skin(2)|urinary_tract(1)	54	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		ACCACCGTGTGGCGGCAGCCC	0.697													2	4	---	---	---	---					
RP11-615J4.3	0	broad.mit.edu	37	3	111197863	111197868	+	RNA	DEL	CACACA	CACACA	-	rs71968470		TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr3:111197863_111197868delCACACA	ENST00000497896.1	-	0	208																											CGAACAGCCTcacacacacacacaca	0.544													3	3	---	---	---	---					
C2CD4B	388125	broad.mit.edu	37	15	62456957	62456957	+	Frame_Shift_Del	DEL	G	G	-			TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr15:62456957delG	ENST00000380392.3	-	2	355	c.227delC	c.(226-228)agfs	p.T76fs		NM_001007595.2	NP_001007596.2	A6NLJ0	C2C4B_HUMAN	C2 calcium-dependent domain containing 4B	76						nucleus				skin(1)	1						GTCCCAGTCCGTGCGGCCGGC	0.751													2	4	---	---	---	---					
MIR3648	0	broad.mit.edu	37	21	9825838	9825839	+	RNA	INS	-	-	GCG	rs3052281		TCGA-RW-A67W-01A-11D-A35D-08	TCGA-RW-A67W-10A-01D-A35B-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a2802760-5ae5-4aa6-8221-6410cfd3fe5f	962810ca-3ae8-4c48-ac0b-aba7aea29b12	g.chr21:9825838_9825839insGCG	ENST00000581792.1	+	0	7_8					NR_037421.1																						cggccgcgactgcggcggcggt	0.842													8	8	---	---	---	---					
