Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FAM86JP	0	broad.mit.edu	37	3	125647387	125647387	+	RNA	SNP	G	G	A			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr3:125647387G>A	ENST00000485843.1	+	0	532					NR_024251.1																						ACCAGAAACTGTTTCCCTATG	0.502000													4	70					0	0	1	0	0
AGAP6	414189	broad.mit.edu	37	10	51749117	51749117	+	Silent	SNP	G	G	A			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr10:51749117G>A	ENST00000412531.3	+	2	345	c.273G>A	c.(271-273)caG>caA	p.Q91Q	AGAP6_ENST00000374056.4_Intron	NM_001077665.2	NP_001071133.2	C9IYN2	C9IYN2_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH domain 6	91					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding	p.Q91Q(1)		NS(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|liver(1)|lung(8)|prostate(3)|skin(1)|stomach(2)	29						CAATATTCCAGAGGAACTCTC	0.358000													4	44					0	0	1	0	0
TCTE1	202500	broad.mit.edu	37	6	44250125	44250125	+	Missense_Mutation	SNP	T	T	G			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr6:44250125T>G	ENST00000371505.4	-	4	1140	c.1018A>C	c.(1018-1020)Aac>Cac	p.N340H	TCTE1_ENST00000371503.3_Intron|TMEM151B_ENST00000438774.2_Intron|TCTE1_ENST00000371504.1_Intron	NM_182539.3	NP_872345.2	Q5JU00	TCTE1_HUMAN	t-complex-associated-testis-expressed 1	340										breast(1)|central_nervous_system(1)|endometrium(6)|kidney(1)|large_intestine(10)|lung(9)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)	34	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TTAGCCAGGTTGAGCACACGC	0.602000													17	67					0	0	1	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72032295	72032295	+	Splice_Site	SNP	G	G	A			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr12:72032295G>A	ENST00000378743.3	-	7	1986	c.1627_splice	c.e7-1	p.A543_splice		NM_144982.4	NP_659419.3	O60293	ZC3H1_HUMAN	zinc finger, C3H1-type containing	543	Pro-rich.				RNA processing	intracellular	metal ion binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(4)|large_intestine(12)|lung(31)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	69						TGGTGAAGGAGCTGTAAAAAA	0.358000													7	21					0	0	1	0	0
GPRC5C	0	broad.mit.edu	37	17	72436724	72436724	+	Missense_Mutation	SNP	A	A	T			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr17:72436724A>T	ENST00000392627.1	+	2	2070	c.944A>T	c.(943-945)cAc>cTc	p.H315L	GPRC5C_ENST00000342648.5_Intron|GPRC5C_ENST00000481232.1_Intron|GPRC5C_ENST00000392629.2_Missense_Mutation_p.H282L	NM_022036.2	NP_071319.2	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor, family C, group 5, member C	270						cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			central_nervous_system(1)|large_intestine(3)|lung(9)|ovary(2)|pancreas(1)|prostate(1)	17						AACAAGCAGCACAACAGTCCC	0.607000													3	47					0	0	1	0	0
GLUD1P2	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	A	G			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr10:48968566A>G	ENST00000594520.1	+	0	723																											ACAGGATAACAAACTGGAAAA	0.318000													6	55					0	0	1	0	0
FAM86JP	0	broad.mit.edu	37	3	125647396	125647396	+	RNA	SNP	T	T	C			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr3:125647396T>C	ENST00000485843.1	+	0	541					NR_024251.1																						TGTTTCCCTATGAAGAGCACT	0.502000													4	70					0	0	1	0	0
PRSS3P2	0	broad.mit.edu	37	7	142481888	142481888	+	RNA	SNP	T	T	C	rs138077672	by1000genomes	TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr7:142481888T>C	ENST00000603901.1	+	0	567					NR_001296.3																						TGGGCTTCCTTGAGGGAGGCA	0.522000													4	31					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36893822	36893822	+	Frame_Shift_Del	DEL	C	C	-			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr3:36893822delC	ENST00000301807.6	-	13	4679	c.2782delG	c.(2782-2784)cafs	p.A928fs	TRANK1_ENST00000428977.2_Frame_Shift_Del_p.A928fs|TRANK1_ENST00000429976.2_Frame_Shift_Del_p.A1478fs	NM_014831.2	NP_055646.2	O15050	TRNK1_HUMAN	tetratricopeptide repeat and ankyrin repeat containing 1	1478					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			NS(2)|autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(18)|lung(20)|ovary(1)|prostate(3)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(2)	73						ACTCCAGATGCCAGATTGAGG	0.428													2	4	---	---	---	---					
LGI2	55203	broad.mit.edu	37	4	25032205	25032205	+	Frame_Shift_Del	DEL	G	G	-			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr4:25032205delG	ENST00000382114.4	-	1	296	c.111delC	c.(109-111)ccfs	p.P37fs		NM_018176.3	NP_060646.2	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	37	LRRNT.					extracellular region				breast(2)|endometrium(2)|kidney(2)|large_intestine(6)|lung(15)|prostate(1)|skin(3)|stomach(2)	33		Breast(46;0.173)				TGCAAGTGGCGGGGCAGCGCG	0.706													3	5	---	---	---	---					
CACNA1H	8912	broad.mit.edu	37	16	1260066	1260066	+	Frame_Shift_Del	DEL	A	A	-			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr16:1260066delA	ENST00000348261.5	+	18	4024	c.3776delA	c.(3775-3777)ggfs	p.E1259fs	CACNA1H_ENST00000358590.4_Frame_Shift_Del_p.E1259fs|CACNA1H_ENST00000565831.1_Frame_Shift_Del_p.E1259fs	NM_021098.2	NP_066921.2	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type, alpha 1H subunit	1259					aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(4)|endometrium(5)|kidney(2)|lung(23)	34		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	AAAGTGCTGGAGCCCTACAAG	0.697													2	4	---	---	---	---					
RP5-991G20.1	0	broad.mit.edu	37	16	72763863	72763864	+	RNA	INS	-	-	A			TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr16:72763863_72763864insA	ENST00000563328.2	+	0	164																											TTCAGCGGTCCAAAACAAAAAA	0.441													2	4	---	---	---	---					
IGLV3-12	0	broad.mit.edu	37	22	23114749	23114749	+	RNA	DEL	T	T	-	rs74864698		TCGA-S7-A7WP-01A-11D-A35I-08	TCGA-S7-A7WP-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	687119b3-37f2-45c9-a3a7-99f98f22db9f	97dfb2ff-9dc1-4c76-9c1e-905963ed10e8	g.chr22:23114749delT	ENST00000390313.2	+	0	55																											CATCCTCTCCTTTTTTTTTTT	0.498													5	10	---	---	---	---					
