Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DHX16	8449	broad.mit.edu	37	6	30633377	30633377	+	Missense_Mutation	SNP	C	C	T	rs139415113		TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr6:30633377C>T	ENST00000376442.3	-	5	995	c.800G>A	c.(799-801)cGg>cAg	p.R267Q		NM_001164239.1|NM_003587.4	NP_001157711.1|NP_003578.2	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	267					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			kidney(2)|ovary(2)	4						GAGCTCCTGCCGCTCGTGCCG	0.627000													3	43					0	0	1	0	0
MAP3K4	4216	broad.mit.edu	37	6	161519378	161519378	+	Missense_Mutation	SNP	C	C	T			TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr6:161519378C>T	ENST00000392142.4	+	17	3741	c.3593C>T	c.(3592-3594)gCt>gTt	p.A1198V	MAP3K4_ENST00000366919.2_Intron|MAP3K4_ENST00000366920.2_Missense_Mutation_p.A1194V|MAP3K4_ENST00000348824.7_Intron	NM_005922.2	NP_005913.2	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1198	Poly-Ala.				activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			breast(6)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(20)|lung(28)|ovary(3)|skin(2)|stomach(1)	77		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		gctgctgctgctgctgttgct	0.597000													6	129					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	215823955	215823955	+	Silent	SNP	G	G	A	rs147037435	byFrequency	TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr1:215823955G>A	ENST00000366943.2	-	65	14708	c.14322C>T	c.(14320-14322)agC>agT	p.S4774S	USH2A_ENST00000307340.3_Silent_p.S4774S			O75445	USH2A_HUMAN	Usher syndrome 2A (autosomal recessive, mild)	4774	Fibronectin type-III 33.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			NS(7)|breast(20)|central_nervous_system(3)|cervix(2)|endometrium(32)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(71)|liver(2)|lung(282)|ovary(25)|pancreas(2)|prostate(12)|skin(22)|stomach(7)|upper_aerodigestive_tract(20)|urinary_tract(3)	527				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CCCCATGGGCGCTGCTGGAGA	0.483000										HNSCC(13;0.011)			16	23					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172642091	172642091	+	Silent	SNP	G	G	A			TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr3:172642091G>A	ENST00000351008.3	-	8	1428	c.1245C>T	c.(1243-1245)ttC>ttT	p.F415F		NM_031955.5	NP_114161.3	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	415					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			breast(2)|cervix(1)|large_intestine(8)|lung(20)|ovary(2)|prostate(1)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	43	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TGGTCAGACCGAAAGGTGTTT	0.338000													7	55					0	0	1	0	0
KIF3C	3797	broad.mit.edu	37	2	26203255	26203255	+	Missense_Mutation	SNP	G	G	A			TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr2:26203255G>A	ENST00000264712.3	-	1	2111	c.1532C>T	c.(1531-1533)gCg>gTg	p.A511V	KIF3C_ENST00000405914.1_Missense_Mutation_p.A511V	NM_002254.6	NP_002245.4	O14782	KIF3C_HUMAN	kinesin family member 3C	511					blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			breast(3)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(8)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	29	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTACTTGGCCGCAAGCAGCTC	0.627000													3	21					0	0	1	0	0
TRBV5-4	0	broad.mit.edu	37	7	142168862	142168862	+	RNA	SNP	A	A	G	rs140095394	by1000genomes	TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr7:142168862A>G	ENST00000454561.2	-	0	183																											TGGGCCAGGCAGCACTGCACC	0.597000													3	28					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713773	142713773	+	RNA	SNP	C	C	G			TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr1:142713773C>G	ENST00000369381.2	-	0	832																											TCTTTTTCCACATTGTCATTT	0.284000													4	77					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713774	142713774	+	RNA	SNP	A	A	G			TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr1:142713774A>G	ENST00000369381.2	-	0	831																											CTTTTTCCACATTGTCATTTT	0.284000													4	77					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54556464	54556464	+	Frame_Shift_Del	DEL	C	C	-			TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr15:54556464delC	ENST00000545554.1	+	8	3547	c.3547delC	c.(3547-3549)cafs	p.P1183fs	UNC13C_ENST00000260323.11_Frame_Shift_Del_p.P1183fs|UNC13C_ENST00000537900.1_Frame_Shift_Del_p.P1181fs			Q8NB66	UN13C_HUMAN	unc-13 homolog C (C. elegans)	1183					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			breast(3)|endometrium(5)|kidney(5)|large_intestine(20)|lung(70)|ovary(6)|pancreas(2)|prostate(2)|upper_aerodigestive_tract(4)|urinary_tract(4)	121				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GAAAAACCGGCCAGAAGTATT	0.408													2	4	---	---	---	---					
RRN3P2	0	broad.mit.edu	37	16	29113498	29113498	+	RNA	DEL	T	T	-	rs11366120		TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr16:29113498delT	ENST00000564580.1	+	0	1360																											AGGAGGTGGAttttttttttc	0.542													3	5	---	---	---	---					
RP4-777D9.2	0	broad.mit.edu	37	20	21142441	21142442	+	RNA	INS	-	-	A	rs71715453		TCGA-S7-A7WU-01A-11D-A35I-08	TCGA-S7-A7WU-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	02290cdf-4c2d-4eb4-b0ff-2b9989c6a2fb	7e54767e-763c-4d5f-a1d0-3eed338704c3	g.chr20:21142441_21142442insA	ENST00000591761.1	-	0	5142				RP5-872K7.7_ENST00000425746.2_RNA|PLK1S1_ENST00000457464.1_RNA																							TTCATTTCTGGAAAAAAAAAAA	0.366													3	3	---	---	---	---					
