Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MCM8	84515	broad.mit.edu	37	20	5933129	5933129	+	Missense_Mutation	SNP	G	G	T			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr20:5933129G>T	ENST00000378896.3	+	3	585	c.208G>T	c.(208-210)Gat>Tat	p.D70Y	MCM8_ENST00000265187.4_Missense_Mutation_p.D70Y|MCM8_ENST00000378886.2_Missense_Mutation_p.D70Y|MCM8_ENST00000378883.1_Missense_Mutation_p.D70Y	NM_032485.4|NM_182802.1	NP_115874.3|NP_877954.1	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	70					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			cervix(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(9)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)	23						GTCAACATTGGATCGATTCAT	0.338000													4	166					0.00909568	0.00909568	1	1	0
SCARB2	950	broad.mit.edu	37	4	77100808	77100808	+	Silent	SNP	G	G	A			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr4:77100808G>A	ENST00000264896.2	-	4	823	c.474C>T	c.(472-474)gcC>gcT	p.A158A	SCARB2_ENST00000452464.2_Intron	NM_005506.3	NP_005497.1	Q14108	SCRB2_HUMAN	scavenger receptor class B, member 2	158					cell adhesion|protein targeting to lysosome	integral to plasma membrane|lysosomal lumen|lysosomal membrane|membrane fraction	enzyme binding|receptor activity			breast(1)|endometrium(4)|kidney(4)|large_intestine(7)|lung(3)|prostate(2)|skin(1)	22			Lung(101;0.196)			CTTTCAACATGGCCTCGATGA	0.488000											OREG0016231	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	218					0	0	1	0	0
ANKRD20A8P	0	broad.mit.edu	37	2	95522786	95522786	+	RNA	SNP	T	T	C			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr2:95522786T>C	ENST00000432432.2	-	0	241					NR_040113.1													p.K44K(1)									CGGCGTCGCCTTTGACAGCTG	0.687000													3	35					0	0	1	0	0
IPO8	10526	broad.mit.edu	37	12	30792609	30792609	+	Missense_Mutation	SNP	C	C	T			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr12:30792609C>T	ENST00000256079.4	-	21	2667	c.2329G>A	c.(2329-2331)Gag>Aag	p.E777K	IPO8_ENST00000544829.1_Missense_Mutation_p.E572K	NM_006390.3	NP_006381.2	O15397	IPO8_HUMAN	importin 8	777					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(16)|liver(1)|lung(22)|prostate(2)|skin(2)|urinary_tract(2)	52	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GTACGAAGCTCACTAGTTTTG	0.438000													19	90					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7683487	7683487	+	Missense_Mutation	SNP	G	G	A	rs147216751		TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr17:7683487G>A	ENST00000572933.1	+	37	7195	c.5735G>A	c.(5734-5736)cGc>cAc	p.R1912H	DNAH2_ENST00000389173.2_Missense_Mutation_p.R1912H			Q9P225	DYH2_HUMAN	dynein, axonemal, heavy chain 2	1912	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(3)|breast(11)|central_nervous_system(1)|cervix(3)|endometrium(18)|haematopoietic_and_lymphoid_tissue(2)|kidney(16)|large_intestine(53)|liver(2)|lung(49)|ovary(7)|prostate(7)|skin(15)|upper_aerodigestive_tract(1)|urinary_tract(1)	189		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TATGCTGGCCGCACAGAGCTT	0.463000													4	205					0	0	1	0	0
ZNF286B	729288	broad.mit.edu	37	17	18565373	18565373	+	Silent	SNP	A	A	G	rs147985634	by1000genomes	TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr17:18565373A>G	ENST00000545289.1	-	5	1696	c.1446T>C	c.(1444-1446)ctT>ctC	p.L482L		NM_001145045.1	NP_001138517.1	P0CG31	Z286B_HUMAN	zinc finger protein 286B	482					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|lung(1)	2						GATGTTGAATAAGAGCTGATG	0.388000													3	58					0	0	1	0	0
GLE1	2733	broad.mit.edu	37	9	131285068	131285068	+	Missense_Mutation	SNP	A	A	T			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr9:131285068A>T	ENST00000309971.4	+	4	660	c.554A>T	c.(553-555)cAg>cTg	p.Q185L	GLE1_ENST00000539582.1_Intron|GLE1_ENST00000372770.4_Missense_Mutation_p.Q185L	NM_001003722.1	NP_001003722.1	Q53GS7	GLE1_HUMAN	GLE1 RNA export mediator	185					poly(A)+ mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear pore	protein binding			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(3)|skin(2)|upper_aerodigestive_tract(1)	16						AAAGAATTCCAGGACTTGCGG	0.473000													3	46					0	0	1	0	0
LCE1E	353135	broad.mit.edu	37	1	152759824	152759824	+	Missense_Mutation	SNP	A	A	C			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr1:152759824A>C	ENST00000368770.3	+	2	102	c.49A>C	c.(49-51)Act>Cct	p.T17P	LCE1E_ENST00000368771.1_Missense_Mutation_p.T17P	NM_178353.1	NP_848130.1	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	17	Cys-rich.				keratinization					lung(5)|stomach(1)	6	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			tcccaagtgcactcccaagtg	0.602000													75	103					0	0	1	0	0
RP11-1407O15.2	0	broad.mit.edu	37	17	36357265	36357265	+	Missense_Mutation	SNP	C	C	T			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr17:36357265C>T	ENST00000312412.4	-	9	987	c.988G>A	c.(988-990)Gca>Aca	p.A330T	RP11-1407O15.2_ENST00000544906.1_Missense_Mutation_p.A175T|TBC1D3_ENST00000537432.1_5'UTR																kidney(1)|lung(3)	4						ATAAGCAATGCAGTCTCCCTA	0.378000													4	19					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223438146	223438146	+	Missense_Mutation	SNP	G	G	T			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr1:223438146G>T	ENST00000343846.3	-	4	1183	c.550C>A	c.(550-552)Cta>Ata	p.L184I	SUSD4_ENST00000344029.6_Missense_Mutation_p.L184I|SUSD4_ENST00000454695.2_Missense_Mutation_p.L24I|SUSD4_ENST00000478605.1_5'UTR|SUSD4_ENST00000366878.4_Missense_Mutation_p.L184I			Q5VX71	SUSD4_HUMAN	sushi domain containing 4	184	Sushi 3.					integral to membrane				cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(5)|liver(1)|lung(5)|skin(1)	17				GBM - Glioblastoma multiforme(131;0.0611)		GAAGAGGCTAGAGGTCTCAGG	0.468000													33	44					6.00712e-18	6.42141e-18	1	1	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261693	39261693	+	Missense_Mutation	SNP	A	A	T	rs113059833	by1000genomes	TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr17:39261693A>T	ENST00000391415.1	+	1	110	c.53A>T	c.(52-54)gAc>gTc	p.D18V		NM_001146041.1	NP_001139513.1	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	18						keratin filament		p.D18V(1)		central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(1)|urinary_tract(3)	14						TGCGGCCAAGACCTCTGTCAG	0.627000													5	33					0	0	1	0	0
ALG1L13P	0	broad.mit.edu	37	8	8095843	8095843	+	RNA	SNP	C	C	T	rs62495078		TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr8:8095843C>T	ENST00000523017.1	-	0	608																											GAAGAGCAGACACTGCCATGG	0.602000													5	33					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32058106	32058106	+	Silent	SNP	G	G	C			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr5:32058106G>C	ENST00000438447.1	+	12	2485	c.2097G>C	c.(2095-2097)ggG>ggC	p.G699G	PDZD2_ENST00000282493.3_Silent_p.G699G			O15018	PDZD2_HUMAN	PDZ domain containing 2	699					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				NS(2)|breast(4)|central_nervous_system(5)|cervix(2)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(31)|lung(58)|ovary(6)|prostate(2)|skin(8)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	148						ATACCAGTGGGGGAGCCTCAG	0.572000													9	28					0	0	1	0	0
VIT	5212	broad.mit.edu	37	2	37041349	37041349	+	Missense_Mutation	SNP	G	G	A			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr2:37041349G>A	ENST00000379242.3	+	16	2229	c.1927G>A	c.(1927-1929)Gtt>Att	p.V643I	VIT_ENST00000389975.3_Missense_Mutation_p.V628I|VIT_ENST00000404084.1_Missense_Mutation_p.V580I|VIT_ENST00000401530.1_Missense_Mutation_p.V607I|VIT_ENST00000497382.1_Missense_Mutation_p.V297I|VIT_ENST00000379241.3_Missense_Mutation_p.V606I	NM_053276.3	NP_444506.2	Q6UXI7	VITRN_HUMAN	vitrin	628	VWFA 2.					proteinaceous extracellular matrix				autonomic_ganglia(1)|breast(3)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|lung(15)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	57		all_hematologic(82;0.248)				TGCGATAGGCGTTGCCTGGGC	0.512000													11	41					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22940429	22940429	+	Missense_Mutation	SNP	C	C	G			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr19:22940429C>G	ENST00000397104.3	-	5	2008	c.2009G>C	c.(2008-2010)tGc>tCc	p.C670S	ZNF99_ENST00000596209.1_Missense_Mutation_p.C761S					zinc finger protein 99									p.C670S(1)		NS(1)|breast(1)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(20)|lung(55)|ovary(2)|prostate(10)|skin(5)|stomach(9)|upper_aerodigestive_tract(2)|urinary_tract(3)	124		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTCACATTTGCAGGGTTTCTC	0.358000													3	60					0	0	1	0	0
PCYT2	5833	broad.mit.edu	37	17	79862805	79862805	+	Silent	SNP	C	C	T			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr17:79862805C>T	ENST00000538936.2	-	13	1182	c.1074G>A	c.(1072-1074)gcG>gcA	p.A358A	PCYT2_ENST00000331285.3_Silent_p.A280A|PCYT2_ENST00000570388.1_Silent_p.A280A|PCYT2_ENST00000570391.1_Silent_p.A326A|PCYT2_ENST00000538721.2_Silent_p.A376A|PCYT2_ENST00000571105.1_Silent_p.A336A	NM_001256435.1|NM_002861.3	NP_001243364.1|NP_002852.1	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	358					phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity			breast(2)|endometrium(1)|lung(4)|ovary(1)	8	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			TCTGGTTTCGCGCCTCATACT	0.647000													3	29					0	0	1	0	0
FBXO28	23219	broad.mit.edu	37	1	224340859	224340859	+	Missense_Mutation	SNP	T	T	C			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr1:224340859T>C	ENST00000366862.5	+	4	575	c.532T>C	c.(532-534)Tat>Cat	p.Y178H	FBXO28_ENST00000424254.2_Intron	NM_015176.3	NP_055991.1	Q9NVF7	FBX28_HUMAN	F-box protein 28	178										endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(3)|ovary(2)|skin(1)	10	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.0363)		TGATGAGATTTATCGTGTGTT	0.343000													47	40					0	0	1	0	0
DGCR8	54487	broad.mit.edu	37	22	20073282	20073282	+	Translation_Start_Site	SNP	T	T	G			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr22:20073282T>G	ENST00000351989.3	+	0	225				DGCR8_ENST00000383024.2_De_novo_Start_OutOfFrame|MIR3618_ENST00000580330.1_RNA	NM_022720.6	NP_073557.3	Q8WYQ5	DGCR8_HUMAN	DGCR8 microprocessor complex subunit						primary miRNA processing	cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding			NS(2)|breast(1)|endometrium(5)|large_intestine(5)|lung(7)|skin(1)|upper_aerodigestive_tract(1)	22	Colorectal(54;0.0993)					GCTGAGTGCATTGTGATTTCC	0.463000													7	14					0	0	1	0	0
GAD1	2571	broad.mit.edu	37	2	171710489	171710489	+	Missense_Mutation	SNP	G	G	A			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr2:171710489G>A	ENST00000358196.3	+	14	1920	c.1370G>A	c.(1369-1371)cGc>cAc	p.R457H		NM_000817.2	NP_000808.2	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 (brain, 67kDa)	457					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(11)|lung(15)|ovary(1)|urinary_tract(2)	35					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CAGTGTGGCCGCCACGTGGAT	0.488000													3	35					0	0	1	0	0
MST1L	0	broad.mit.edu	37	1	17085078	17085078	+	RNA	SNP	T	T	C			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr1:17085078T>C	ENST00000455405.2	-	0	110																											AAACTGCACCTGGTCTGTAGG	0.612000													7	12					0	0	1	0	0
SUSD4	55061	broad.mit.edu	37	1	223438145	223438145	+	Missense_Mutation	SNP	A	A	C			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr1:223438145A>C	ENST00000343846.3	-	4	1184	c.551T>G	c.(550-552)cTa>cGa	p.L184R	SUSD4_ENST00000344029.6_Missense_Mutation_p.L184R|SUSD4_ENST00000454695.2_Missense_Mutation_p.L24R|SUSD4_ENST00000478605.1_5'UTR|SUSD4_ENST00000366878.4_Missense_Mutation_p.L184R			Q5VX71	SUSD4_HUMAN	sushi domain containing 4	184	Sushi 3.					integral to membrane				cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(5)|liver(1)|lung(5)|skin(1)	17				GBM - Glioblastoma multiforme(131;0.0611)		AGAAGAGGCTAGAGGTCTCAG	0.463000													31	44					0	0	1	0	0
MIB2	142678	broad.mit.edu	37	1	1564560	1564560	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr1:1564560delG	ENST00000357210.4	+	17	2640	c.2424delG	c.(2422-2424)gcfs	p.A809fs	MIB2_ENST00000360522.4_Frame_Shift_Del_p.A774fs|MIB2_ENST00000505820.2_Frame_Shift_Del_p.A866fs|MIB2_ENST00000355826.5_Frame_Shift_Del_p.A852fs|MIB2_ENST00000520777.1_Frame_Shift_Del_p.A862fs|MIB2_ENST00000378708.1_Frame_Shift_Del_p.A715fs|MIB2_ENST00000504599.1_Frame_Shift_Del_p.A765fs|MIB2_ENST00000378710.3_Frame_Shift_Del_p.A773fs|MIB2_ENST00000518681.1_Frame_Shift_Del_p.A801fs|MIB2_ENST00000378712.1_Frame_Shift_Del_p.A686fs	NM_080875.2	NP_543151.2	Q96AX9	MIB2_HUMAN	mindbomb E3 ubiquitin protein ligase 2	809					Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(1)|endometrium(5)|lung(7)|prostate(4)|upper_aerodigestive_tract(1)	18	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CGGTGGGCGCGGCGGTCGCCT	0.776													2	4	---	---	---	---					
C1orf27	54953	broad.mit.edu	37	1	186363120	186363121	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr1:186363120_186363121delTT	ENST00000287859.6	+	9	878_879	c.753_754delTT	c.(751-756)tcttfs	p.SF251fs	C1orf27_ENST00000432021.3_Intron|C1orf27_ENST00000419367.3_Frame_Shift_Del_p.SF219fs|C1orf27_ENST00000367470.3_Intron	NM_017847.5	NP_060317.3	Q5SWX8	ODR4_HUMAN	chromosome 1 open reading frame 27	251			S -> C (in dbSNP:rs12084264).			integral to membrane	oxidoreductase activity|zinc ion binding			endometrium(1)|kidney(2)|large_intestine(2)|lung(3)|ovary(1)	9						CTAGTCATTCTTTTGATGTCAG	0.277													2	4	---	---	---	---					
IMMT	10989	broad.mit.edu	37	2	86397875	86397875	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr2:86397875delC	ENST00000410111.3	-	6	1039	c.652delG	c.(652-654)agfs	p.E218fs	IMMT_ENST00000254636.5_Frame_Shift_Del_p.E119fs|IMMT_ENST00000449247.2_Frame_Shift_Del_p.E207fs|IMMT_ENST00000442664.2_Frame_Shift_Del_p.E217fs|IMMT_ENST00000409051.2_Frame_Shift_Del_p.E171fs|IMMT_ENST00000490238.1_5'UTR	NM_001100169.1|NM_001100170.1|NM_006839.2	NP_001093639.1|NP_001093640.1|NP_006830.2	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial	218						integral to mitochondrial inner membrane	protein binding			breast(1)|endometrium(1)|kidney(3)|large_intestine(9)|lung(12)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	30						TACATACACTCAATTTTAACT	0.423													2	4	---	---	---	---					
TRBV6-5	0	broad.mit.edu	37	7	142180822	142180824	+	RNA	DEL	AGA	AGA	-	rs146925843	by1000genomes	TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr7:142180822_142180824delAGA	ENST00000390368.2	-	0	115																											GCAGAGAAGGAGAACAAAGCTGA	0.562													8	95	---	---	---	---					
SCRIB	23513	broad.mit.edu	37	8	144874553	144874554	+	Frame_Shift_Ins	INS	-	-	C	rs6991873	by1000genomes	TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr8:144874553_144874554insC	ENST00000356994.2	-	32	4356_4357	c.4350_4351insG	c.(4348-4353)ccccctfs	p.PP1450fs	SCRIB_ENST00000320476.3_Frame_Shift_Ins_p.PP1450fs|SCRIB_ENST00000377533.3_Frame_Shift_Ins_p.PP1369fs	NM_182706.4	NP_874365.3	Q14160	SCRIB_HUMAN	scribbled planar cell polarity protein	1450					activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			NS(1)|autonomic_ganglia(1)|central_nervous_system(2)|endometrium(3)|kidney(3)|large_intestine(3)|lung(20)|ovary(2)|pancreas(1)|skin(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	42	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			CCTCCCAGGGGTGGGGGGGACG	0.752													2	4	---	---	---	---					
UBQLN3	50613	broad.mit.edu	37	11	5529918	5529920	+	In_Frame_Del	DEL	TGG	TGG	-	rs2234451	byFrequency	TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr11:5529918_5529920delTGG	ENST00000311659.4	-	2	1016_1018	c.869_871delCCA	c.(868-873)agc>a	p.TS290del	HBG2_ENST00000380259.2_Intron	NM_017481.2	NP_059509.1	Q9H347	UBQL3_HUMAN	ubiquilin 3	290			T -> S (in dbSNP:rs2234451).							NS(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(9)|lung(16)|ovary(4)|prostate(1)|skin(2)	39		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAGGTTGGCTGGTGGTGGTGGT	0.537													7	106	---	---	---	---					
C17orf76-AS1	0	broad.mit.edu	37	17	16344167	16344167	+	RNA	DEL	A	A	-	rs10587316		TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr17:16344167delA	ENST00000475953.1	+	0	483				C17orf76-AS1_ENST00000491009.1_RNA|C17orf76-AS1_ENST00000487066.1_RNA|C17orf76-AS1_ENST00000481898.1_RNA|RP11-138I1.3_ENST00000585048.1_lincRNA|C17orf76-AS1_ENST00000584926.1_RNA|C17orf76-AS1_ENST00000584141.1_RNA|C17orf76-AS1_ENST00000580770.1_RNA|C17orf76-AS1_ENST00000584177.1_RNA|C17orf76-AS1_ENST00000583400.2_RNA|C17orf76-AS1_ENST00000477249.2_RNA|C17orf76-AS1_ENST00000475947.2_RNA|C17orf76-AS1_ENST00000582911.1_RNA|C17orf76-AS1_ENST00000581913.1_RNA|C17orf76-AS1_ENST00000581718.1_RNA|C17orf76-AS1_ENST00000470491.2_RNA|C17orf76-AS1_ENST00000480811.1_RNA|C17orf76-AS1_ENST00000484836.1_RNA|C17orf76-AS1_ENST00000472367.1_RNA|C17orf76-AS1_ENST00000580180.1_RNA|C17orf76-AS1_ENST00000579473.1_RNA|C17orf76-AS1_ENST00000478103.2_RNA|C17orf76-AS1_ENST00000483140.1_RNA|C17orf76-AS1_ENST00000460249.1_RNA|C17orf76-AS1_ENST00000481027.1_RNA|C17orf76-AS1_ENST00000492250.1_RNA	NR_027667.1																						actccatctcaaaaaaaaaaa	0.413													3	3	---	---	---	---					
LRRC45	201255	broad.mit.edu	37	17	79981565	79981565	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr17:79981565delG	ENST00000306688.3	+	1	388	c.46delG	c.(46-48)ggfs	p.G16fs	LRRC45_ENST00000583383.1_3'UTR	NM_144999.2	NP_659436.1	Q96CN5	LRC45_HUMAN	leucine rich repeat containing 45	16						centrosome				lung(2)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	5	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CAGGGAGAGTGGGGCCGAGCC	0.711													2	4	---	---	---	---					
TLE2	7089	broad.mit.edu	37	19	3028803	3028804	+	Splice_Site	INS	-	-	G			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr19:3028803_3028804insG	ENST00000262953.6	-	2	287		c.e2-2		TLE2_ENST00000455444.2_5'UTR|TLE2_ENST00000443826.3_Splice_Site|TLE2_ENST00000590536.1_Splice_Site|TLE2_ENST00000591529.1_Splice_Site|TLE2_ENST00000426948.2_Splice_Site	NM_003260.4	NP_003251.2	Q04725	TLE2_HUMAN	transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)						negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity			breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(3)|lung(6)|prostate(1)	13				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCGGGGTCTGGGGGGGGTGT	0.624													7	125	---	---	---	---					
HAMP	57817	broad.mit.edu	37	19	35773520	35773522	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-SP-A6QC-01A-11D-A35I-08	TCGA-SP-A6QC-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3510ad36-e4f3-41f5-a5e3-1b56771b5180	9a540ad9-c71c-4557-9157-b18b25339958	g.chr19:35773520_35773522delCTC	ENST00000598398.1	+	2	336_338	c.40_42delCTC	c.(40-42)del	p.L18del	HAMP_ENST00000222304.3_In_Frame_Del_p.L18del	NM_021175.2	NP_066998.1	P81172	HEPC_HUMAN	hepcidin antimicrobial peptide	18					defense response to bacterium|defense response to fungus|immune response|killing of cells of other organism	extracellular region	hormone activity			breast(1)|central_nervous_system(1)|large_intestine(1)|lung(1)	4	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)		Epithelial(14;7.4e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.47e-19)|all cancers(14;4.17e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TTGCCTCCTGCTCCTCCTCCTCC	0.640													8	127	---	---	---	---					
