Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BTN2A3P	0	broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	rs141013110		TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr6:26422353C>T	ENST00000466808.2	+	0	7																		p.P3S(2)									GCTCATGGAACCAGCTGCTGC	0.622000													4	89					0	0	1	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148653479	148653479	+	Silent	SNP	C	C	T			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr4:148653479C>T	ENST00000336498.3	+	1	266	c.27C>T	c.(25-27)agC>agT	p.S9S		NM_024605.3	NP_078881.3	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	9	BAR.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			autonomic_ganglia(2)|endometrium(5)|kidney(2)|large_intestine(4)|liver(2)|lung(13)|ovary(1)|pancreas(1)|prostate(1)|skin(2)	33	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		TGGAGTTCAGCGACTGCTACC	0.672000													4	41					0	0	1	0	0
ADCY9	115	broad.mit.edu	37	16	4015941	4015941	+	Silent	SNP	C	C	T	rs146633008		TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr16:4015941C>T	ENST00000294016.3	-	11	4435	c.3897G>A	c.(3895-3897)acG>acA	p.T1299T		NM_001116.3	NP_001107.2	O60503	ADCY9_HUMAN	adenylate cyclase 9	1299				QHQLSISPDIRVQVDGSIGRSPTDEIANLVPSVQYVDKTSL GSDSSTQAKDAHLSPKRPWKEPVKAEERGRFGKAIEKDDCD ETGIEEANELTKLNVSKSV -> APAVHLPRHPRPGGWQHR TVSHRRDCQPGAFCPVCGQDISGF (in Ref. 1; AAC24201).	activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			breast(4)|central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(3)|large_intestine(11)|lung(9)|ovary(5)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	47						CCTTGGCCTGCGTGCTGCTGT	0.567000													3	68					0	0	1	0	0
ABCF2	10061	broad.mit.edu	37	7	150915186	150915186	+	Missense_Mutation	SNP	A	A	G			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr7:150915186A>G	ENST00000287844.2	-	11	1428	c.1319T>C	c.(1318-1320)cTg>cCg	p.L440P	ABCF2_ENST00000222388.2_Missense_Mutation_p.L440P	NM_007189.1	NP_009120.1	Q9UG63	ABCF2_HUMAN	ATP-binding cassette, sub-family F (GCN20), member 2	440	ABC transporter 2.					ATP-binding cassette (ABC) transporter complex|mitochondrial envelope	ATP binding|ATPase activity|transporter activity			breast(1)|central_nervous_system(1)|large_intestine(4)|lung(15)|ovary(1)|skin(2)	24			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TAGCAGCTTCAGAAGAGTTGA	0.517000													5	76					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100479757	100479757	+	Silent	SNP	C	C	T			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr8:100479757C>T	ENST00000395996.1	+	24	3672	c.3561C>T	c.(3559-3561)gtC>gtT	p.V1187V	VPS13B_ENST00000358544.2_Silent_p.V1187V|VPS13B_ENST00000357162.2_Silent_p.V1187V			Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13 homolog B (yeast)	1187					protein transport					NS(1)|autonomic_ganglia(1)|breast(6)|central_nervous_system(4)|cervix(3)|endometrium(11)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(37)|lung(78)|ovary(8)|pancreas(3)|prostate(5)|skin(9)|upper_aerodigestive_tract(4)|urinary_tract(9)	193	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CTCTAGCTGTCACGTCTCAAA	0.438000													31	127					0	0	1	0	0
GTPBP2	54676	broad.mit.edu	37	6	43589788	43589788	+	Silent	SNP	G	G	A			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr6:43589788G>A	ENST00000307126.5	-	11	1583	c.1584C>T	c.(1582-1584)caC>caT	p.H528H	GTPBP2_ENST00000476510.1_5'UTR|GTPBP2_ENST00000307114.7_Silent_p.H440H	NM_019096.3	NP_061969.3	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	528							GTP binding|GTPase activity			breast(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(3)|liver(1)|lung(3)|prostate(1)|skin(2)|urinary_tract(1)	18	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			CGTTGCCCACGTGTACTGTCA	0.552000													4	117					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr12:132547087G>A	ENST00000333577.4	+	48	8392	c.8283G>A	c.(8281-8283)caG>caA	p.Q2761Q	EP400_ENST00000332482.4_Silent_p.Q2688Q|EP400_ENST00000330386.6_Silent_p.Q2644Q|EP400_ENST00000389562.2_Silent_p.Q2724Q|EP400_ENST00000389561.2_Silent_p.Q2725Q			Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2724Q(16)|p.Q2725Q(1)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.562000													4	52					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21158716	21158716	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr10:21158716G>A	ENST00000377122.4	-	6	931	c.535C>T	c.(535-537)Cga>Tga	p.R179*	NEBL_ENST00000377159.4_Intron|NEBL_ENST00000417816.2_Intron|NEBL_ENST00000377119.1_Nonsense_Mutation_p.R179*	NM_006393.2	NP_006384.1	O76041	NEBL_HUMAN	nebulette	179					regulation of actin filament length		actin binding|structural constituent of muscle	p.R179*(1)		NS(2)|breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(14)|lung(22)|ovary(2)|pancreas(1)|prostate(2)|skin(8)|stomach(5)|upper_aerodigestive_tract(1)|urinary_tract(2)	70						ATGTCTGGTCGGTCAAGTTCT	0.368000													4	125					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr9:20414343A>G	ENST00000380338.4	-	5	787	c.501T>C	c.(499-501)agT>agC	p.S167S	MLLT3_ENST00000429426.2_Silent_p.S164S|MLLT3_ENST00000355930.6_5'UTR|MLLT3_ENST00000475957.1_5'UTR	NM_004529.2	NP_004520.2	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	167	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding	p.S167S(19)		central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7)	66				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctactgctgctgc	0.532000			T	MLL	ALL								5	83					0	0	1	0	0
PCDHGA4	0	broad.mit.edu	37	5	140737040	140737040	+	Missense_Mutation	SNP	C	C	T			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr5:140737040C>T	ENST00000571252.1	+	1	2273	c.2273C>T	c.(2272-2274)tCc>tTc	p.S758F	PCDHGA3_ENST00000253812.6_Intron|PCDHGB1_ENST00000523390.1_Intron|PCDHGA2_ENST00000394576.2_Intron|PCDHGA1_ENST00000517417.1_Intron	NM_018917.2	NP_061740.1														endometrium(1)|kidney(1)|lung(3)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGAGGTCTCCCTCACCGCG	0.602000													14	135					0	0	1	0	0
MICU3	286097	broad.mit.edu	37	8	16962937	16962937	+	Silent	SNP	C	C	G			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr8:16962937C>G	ENST00000318063.5	+	11	1143	c.1101C>G	c.(1099-1101)ctC>ctG	p.L367L	MICU3_ENST00000519866.1_3'UTR	NM_181723.2	NP_859074.1			mitochondrial calcium uptake family, member 3																		TGGATAATCTCCAAACAGAAG	0.313000													8	58					0	0	1	0	0
ZEB2	9839	broad.mit.edu	37	2	145147119	145147119	+	Nonsense_Mutation	SNP	C	C	A			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr2:145147119C>A	ENST00000558170.2	-	10	4728	c.3544G>T	c.(3544-3546)Gaa>Taa	p.E1182*	ZEB2_ENST00000409487.3_Nonsense_Mutation_p.E1182*|ZEB2_ENST00000303660.4_Nonsense_Mutation_p.E1182*|ZEB2_ENST00000539609.3_Nonsense_Mutation_p.E1158*	NM_014795.3	NP_055610.1	O60315	ZEB2_HUMAN	zinc finger E-box binding homeobox 2	1182	Glu-rich (acidic).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			breast(3)|central_nervous_system(1)|cervix(2)|endometrium(7)|kidney(6)|large_intestine(23)|lung(45)|ovary(5)|pancreas(2)|prostate(6)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(3)	107				BRCA - Breast invasive adenocarcinoma(221;0.112)		GTCTCTTCTTCATCTCGTATC	0.478000													4	109					1.23904e-05	1.23904e-05	1	1	0
CDC27	996	broad.mit.edu	37	17	45234323	45234323	+	Silent	SNP	T	T	C			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr17:45234323T>C	ENST00000066544.3	-	7	891	c.798A>G	c.(796-798)cgA>cgG	p.R266R	CDC27_ENST00000531206.1_Silent_p.R266R|CDC27_ENST00000446365.2_Silent_p.R205R|CDC27_ENST00000527547.1_Silent_p.R266R	NM_001114091.1|NM_001256.3	NP_001107563.1|NP_001247.3	P30260	CDC27_HUMAN	cell division cycle 27	266					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			NS(1)|breast(5)|central_nervous_system(3)|cervix(1)|endometrium(2)|kidney(17)|large_intestine(18)|lung(11)|ovary(5)|pancreas(1)|prostate(19)|skin(5)|upper_aerodigestive_tract(2)	90						CTAATAAACTTCGACCAGTTT	0.358000													8	73					0	0	1	0	0
STAC3	246329	broad.mit.edu	37	12	57643383	57643383	+	Missense_Mutation	SNP	A	A	G			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr12:57643383A>G	ENST00000332782.2	-	2	238	c.37T>C	c.(37-39)Tcc>Ccc	p.S13P	STAC3_ENST00000554578.1_Intron|STAC3_ENST00000546246.2_Intron	NM_145064.1	NP_659501.1	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	13					intracellular signal transduction		identical protein binding|metal ion binding			breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(10)|ovary(2)|skin(1)	18						GCTGGGAAGGAGGGCTTAGGG	0.537000													4	50					0	0	1	0	0
TRMT2B	79979	broad.mit.edu	37	X	100297190	100297190	+	Missense_Mutation	SNP	G	G	A			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chrX:100297190G>A	ENST00000338687.7	-	3	894	c.89C>T	c.(88-90)cCc>cTc	p.P30L	TRMT2B_ENST00000545398.1_Missense_Mutation_p.P30L|TRMT2B_ENST00000478422.1_Intron|TRMT2B_ENST00000372935.1_Missense_Mutation_p.P30L|TRMT2B_ENST00000372939.1_Missense_Mutation_p.P30L|TRMT2B_ENST00000372936.3_Missense_Mutation_p.P30L|TRMT2B_ENST00000372931.5_Missense_Mutation_p.P30L			Q96GJ1	TRM2_HUMAN	tRNA methyltransferase 2 homolog B (S. cerevisiae)	30							tRNA (uracil-5-)-methyltransferase activity			breast(3)|endometrium(2)|kidney(2)|large_intestine(3)|lung(10)|ovary(1)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	24						GGCATACCAGGGAAGCAGTCC	0.502000													18	44					0	0	1	0	0
HOXB3	3213	broad.mit.edu	37	17	46629486	46629486	+	Silent	SNP	G	G	A			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr17:46629486G>A	ENST00000470495.1	-	1	1798	c.351C>T	c.(349-351)tgC>tgT	p.C117C	HOXB3_ENST00000485909.2_Intron|HOXB3_ENST00000498678.1_Silent_p.C117C|HOXB3_ENST00000476342.1_Silent_p.C117C|HOXB3_ENST00000472863.1_Silent_p.C44C|HOXB-AS3_ENST00000465846.2_RNA|HOXB3_ENST00000460160.1_Intron|HOXB3_ENST00000311626.4_Silent_p.C117C|HOXB3_ENST00000490677.1_Intron|HOXB3_ENST00000489475.1_Silent_p.C44C			P14651	HXB3_HUMAN	homeobox B3	117					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|endometrium(4)|kidney(2)|large_intestine(2)|lung(16)|prostate(4)|upper_aerodigestive_tract(1)	30						TGCCGGGACCGCACTTTGGGG	0.617000													6	298					0	0	1	0	0
UBN1	29855	broad.mit.edu	37	16	4910691	4910693	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr16:4910691_4910693delAGA	ENST00000396658.4	+	6	1401_1403	c.698_700delAGA	c.(697-702)gag>g	p.EK233del	UBN1_ENST00000590769.1_In_Frame_Del_p.EK233del|UBN1_ENST00000262376.6_In_Frame_Del_p.EK233del|UBN1_ENST00000545171.1_In_Frame_Del_p.EK233del	NM_016936.3	NP_058632.2	Q9NPG3	UBN1_HUMAN	ubinuclein 1	233	Lys-rich.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity	p.K234E(1)		NS(1)|endometrium(6)|kidney(4)|large_intestine(10)|lung(12)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	38						GCCAGTAAGGAGAAGAAGAAGAA	0.453													9	215	---	---	---	---					
NPIPA8	101059953	broad.mit.edu	37	16	18441114	18441116	+	Splice_Site	DEL	CAC	CAC	-			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr16:18441114_18441116delCAC	ENST00000339303.5	-	1	15		c.e1+1							nuclear pore complex interacting protein family, member A8																		CGGCCATACTCACCACTGGGACT	0.709													5	11	---	---	---	---					
LINC00482	0	broad.mit.edu	37	17	79279019	79279020	+	RNA	INS	-	-	C	rs3215153	by1000genomes	TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chr17:79279019_79279020insC	ENST00000332012.5	-	0	573_574					NR_038080.1																						CCCAGGCACAGCCCCTGAGGCA	0.673													5	9	---	---	---	---					
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-	rs72445954		TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chrX:38079976_38079978delGCA	ENST00000378533.3	-	1	174_176	c.68_70delTGC	c.(67-72)cgc>c	p.LR23del	TM4SF2_ENST00000465127.1_Intron|SRPX_ENST00000544439.1_In_Frame_Del_p.LR23del|SRPX_ENST00000432886.2_In_Frame_Del_p.LR23del|SRPX_ENST00000538295.1_In_Frame_Del_p.LR23del|SRPX_ENST00000343800.6_Intron	NM_006307.4	NP_006298.1	P78539	SRPX_HUMAN	sushi-repeat containing protein, X-linked	23			Missing.		cell adhesion	cell surface|membrane		p.L23delL(2)		autonomic_ganglia(1)|breast(2)|endometrium(5)|large_intestine(5)|lung(10)|prostate(2)	25						GGCGGGACGCgcagcagcagcag	0.729											OREG0019726	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	8	---	---	---	---					
FAM120C	54954	broad.mit.edu	37	X	54209302	54209303	+	In_Frame_Ins	INS	-	-	GGCGGC			TCGA-SP-A6QG-01A-12D-A35I-08	TCGA-SP-A6QG-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fc3443dd-2a18-4c31-b14e-d87edca616ff	d94a0f0a-e850-4bfb-b531-1259d30edbd6	g.chrX:54209302_54209303insGGCGGC	ENST00000375180.2	-	1	385_386	c.329_330insGCCGCC	c.(328-330)ccc>cGCCGCCcc	p.109_110insRR	FAM120C_ENST00000328235.4_In_Frame_Ins_p.109_110insRR|FAM120C_ENST00000477084.1_In_Frame_Ins_p.109_110insRR	NM_017848.4	NP_060318.3	Q9NX05	F120C_HUMAN	family with sequence similarity 120C	109										breast(3)|central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(5)|lung(9)|ovary(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	28						GCAGCTGAGGGGGCGGCGGCGG	0.748													3	5	---	---	---	---					
