Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MLTK	0	broad.mit.edu	37	2	174085985	174085985	+	Silent	SNP	C	C	T			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr2:174085985C>T	ENST00000338983.3	+	12	1290	c.1095C>T	c.(1093-1095)aaC>aaT	p.N365N	MLTK_ENST00000539448.1_Silent_p.N365N|MLTK_ENST00000375213.3_Intron|MLK7-AS1_ENST00000423106.2_RNA|MLTK_ENST00000409176.2_Intron|MLTK_ENST00000431503.2_Silent_p.N264N|MLK7-AS1_ENST00000422703.1_RNA	NM_133646.2	NP_598407.1																					CAACAAGTAACGGGGAGGGCC	0.478000													6	64					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	A	G	rs9424867		TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr1:145302714A>G	ENST00000342960.5	+	8	1187	c.1152A>G	c.(1150-1152)ttA>ttG	p.L384L	NBPF10_ENST00000369338.1_Silent_p.L113L|NBPF10_ENST00000369339.2_Silent_p.L113L|RP11-458D21.5_ENST00000468030.1_3'UTR	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	384								p.L113L(3)|p.L384L(3)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527000													4	56					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71103196	71103196	+	Missense_Mutation	SNP	G	G	A	rs140028548		TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr16:71103196G>A	ENST00000393567.2	-	14	2098	c.1948C>T	c.(1948-1950)Cgc>Tgc	p.R650C	HYDIN_ENST00000448691.1_Missense_Mutation_p.R650C|HYDIN_ENST00000448089.2_Missense_Mutation_p.R650C|HYDIN_ENST00000541601.1_Missense_Mutation_p.R667C|HYDIN_ENST00000393550.2_Missense_Mutation_p.R665C|HYDIN_ENST00000321489.5_Missense_Mutation_p.R650C|HYDIN_ENST00000288168.10_Missense_Mutation_p.R667C|HYDIN_ENST00000538248.1_Missense_Mutation_p.R677C	NM_001270974.1	NP_001257903.1	Q4G0P3	HYDIN_HUMAN	HYDIN, axonemal central pair apparatus protein	650										breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(17)|lung(12)|ovary(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)	43		Ovarian(137;0.0654)				CCCTGGGGGCGAATGGTGCCA	0.488000													6	35					0	0	1	0	0
ATP6V0C	527	broad.mit.edu	37	16	2569716	2569716	+	Silent	SNP	C	C	T			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr16:2569716C>T	ENST00000330398.4	+	3	672	c.438C>T	c.(436-438)ctC>ctT	p.L146L	ATP6C_ENST00000569317.1_Intron|ATP6V0C_ENST00000565223.1_Silent_p.L103L|ATP6V0C_ENST00000564973.1_Silent_p.L103L|RP11-20I23.1_ENST00000564543.1_3'UTR	NM_001198569.1|NM_001694.3	NP_001185498.1|NP_001685.1	P27449	VATL_HUMAN	ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c	146					ATP hydrolysis coupled proton transport|ATP synthesis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|interspecies interaction between organisms|transferrin transport	endosome membrane|integral to membrane|proton-transporting ATP synthase complex, coupling factor F(o)|proton-transporting V-type ATPase, V0 domain|vacuolar membrane	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism|ubiquitin protein ligase binding			endometrium(1)|lung(1)|ovary(1)	3		Ovarian(90;0.17)				TCTACGGTCTCATCGTCGCCC	0.597000													4	56					0	0	1	0	0
TCF19	6941	broad.mit.edu	37	6	31129467	31129467	+	Missense_Mutation	SNP	G	G	A			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr6:31129467G>A	ENST00000376257.3	+	3	1236	c.482G>A	c.(481-483)cGg>cAg	p.R161Q	TCF19_ENST00000376255.4_Missense_Mutation_p.R161Q|TCF19_ENST00000496421.1_Intron	NM_007109.2	NP_009040.2	Q9Y242	TCF19_HUMAN	transcription factor 19	161					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			kidney(1)|large_intestine(1)|lung(5)|prostate(1)|skin(1)	9						GCTCCACAGCGGCCTCTCAGC	0.647000													6	38					0	0	1	0	0
C6orf58	352999	broad.mit.edu	37	6	127911362	127911362	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr6:127911362C>T	ENST00000329722.7	+	5	817	c.805C>T	c.(805-807)Cga>Tga	p.R269*		NM_001010905.1	NP_001010905.1	Q6P5S2	CF058_HUMAN	chromosome 6 open reading frame 58	269						extracellular region				kidney(3)|large_intestine(3)|liver(1)|lung(7)|pancreas(1)	15				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		CATGCCACCACGAATTCTTCT	0.403000													9	117					0	0	1	0	0
ABCA9	10350	broad.mit.edu	37	17	66979978	66979978	+	Silent	SNP	G	G	A			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr17:66979978G>A	ENST00000340001.4	-	36	4723	c.4512C>T	c.(4510-4512)tcC>tcT	p.S1504S	ABCA9_ENST00000370732.2_3'UTR|ABCA9_ENST00000453985.2_Silent_p.S1466S	NM_080283.3	NP_525022.2	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A (ABC1), member 9	1504	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			NS(2)|breast(4)|central_nervous_system(3)|endometrium(8)|kidney(3)|large_intestine(21)|lung(35)|ovary(4)|prostate(5)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	91	Breast(10;1.47e-12)					GGTGTTGGATGGAACCAATAC	0.468000													3	55					0	0	1	0	0
SNORD3A	0	broad.mit.edu	37	17	19091465	19091465	+	RNA	SNP	G	G	C			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr17:19091465G>C	ENST00000365494.1	+	0	137																											gcgttgcttggctgcaactgc	0.517000													20	261					0	0	1	0	0
FAM187B	148109	broad.mit.edu	37	19	35718939	35718939	+	Silent	SNP	G	G	A	rs13382163		TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr19:35718939G>A	ENST00000324675.3	-	1	693	c.645C>T	c.(643-645)taC>taT	p.Y215Y		NM_152481.1	NP_689694.1	Q17R55	F187B_HUMAN	family with sequence similarity 187, member B	215						integral to membrane		p.Y215Y(1)		breast(1)|endometrium(1)|large_intestine(2)|lung(3)|ovary(2)	9						CAAAAATGACGTAATCCACCC	0.537000													3	22					0	0	1	0	0
NCOR1P1	0	broad.mit.edu	37	20	26094557	26094557	+	RNA	SNP	A	A	C			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr20:26094557A>C	ENST00000478176.1	-	0	107					NR_003678.1																						TTACAGAGTGAGGAGGATAAT	0.418000													3	16					0	0	1	0	0
GRIK1	2897	broad.mit.edu	37	21	30927396	30927396	+	Missense_Mutation	SNP	G	G	A			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr21:30927396G>A	ENST00000399914.1	-	15	3060	c.2539C>T	c.(2539-2541)Cgg>Tgg	p.R847W	GRIK1_ENST00000535441.1_Missense_Mutation_p.R864W|GRIK1_ENST00000389124.2_Missense_Mutation_p.R862W|GRIK1_ENST00000399907.1_Missense_Mutation_p.R862W|GRIK1_ENST00000389125.3_Missense_Mutation_p.R847W|GRIK1_ENST00000399909.1_Missense_Mutation_p.R847W|GRIK1_ENST00000309434.7_Missense_Mutation_p.R864W|GRIK1_ENST00000399913.1_Missense_Mutation_p.R862W|GRIK1_ENST00000327783.4_Missense_Mutation_p.R862W			P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	862					central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity	p.R847W(1)		NS(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(11)|lung(18)|ovary(1)|prostate(4)|skin(1)|stomach(1)|urinary_tract(1)	45					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TTATTCTTCCGTGATTTGTAT	0.393000													5	30					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32163789	32163789	+	Missense_Mutation	SNP	A	A	G			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr6:32163789A>G	ENST00000375023.3	-	30	5575	c.5437T>C	c.(5437-5439)Tgg>Cgg	p.W1813R	NOTCH4_ENST00000443903.2_3'UTR	NM_004557.3	NP_004548.3	Q99466	NOTC4_HUMAN	notch 4	1813					cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(4)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|lung(47)|ovary(5)|prostate(4)|skin(10)|upper_aerodigestive_tract(1)|urinary_tract(1)	100						AGCAGATCCCAGTGGTTACGT	0.716000													7	9					0	0	1	0	0
AHCTF1	25909	broad.mit.edu	37	1	247067288	247067288	+	Missense_Mutation	SNP	T	T	A			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr1:247067288T>A	ENST00000366508.1	-	7	1170	c.1034A>T	c.(1033-1035)aAt>aTt	p.N345I	AHCTF1_ENST00000391829.2_Missense_Mutation_p.N310I|AHCTF1_ENST00000326225.3_Missense_Mutation_p.N319I			Q8WYP5	ELYS_HUMAN	AT hook containing transcription factor 1	310	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			NS(1)|breast(6)|cervix(3)|endometrium(8)|kidney(6)|large_intestine(12)|liver(2)|lung(21)|ovary(5)|prostate(1)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(2)	74	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			ACACTTTCTATTACCAAAGGC	0.328000													8	27					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197184340	197184340	+	Missense_Mutation	SNP	T	T	C			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr2:197184340T>C	ENST00000260983.2	-	9	1456	c.1274A>G	c.(1273-1275)cAc>cGc	p.H425R	HECW2_ENST00000409111.1_Missense_Mutation_p.H69R	NM_020760.1	NP_065811.1	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	425					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity	p.H425P(1)		biliary_tract(1)|breast(3)|central_nervous_system(4)|cervix(2)|endometrium(7)|kidney(4)|large_intestine(24)|lung(45)|ovary(5)|pancreas(2)|prostate(2)|skin(10)|upper_aerodigestive_tract(2)|urinary_tract(2)	113						GTGGCCATTGTGTTCGATAGC	0.507000													9	59					0	0	1	0	0
CPXM1	56265	broad.mit.edu	37	20	2775281	2775281	+	Missense_Mutation	SNP	C	C	T			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr20:2775281C>T	ENST00000380605.2	-	13	1929	c.1865G>A	c.(1864-1866)cGc>cAc	p.R622H		NM_001184699.1|NM_019609.4	NP_001171628.1|NP_062555.1	Q96SM3	CPXM1_HUMAN	carboxypeptidase X (M14 family), member 1	622					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			endometrium(5)|kidney(5)|large_intestine(8)|lung(17)|ovary(2)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	43						AATGCCCATGCGCACCTGtgt	0.552000													3	30					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31791358	31791358	+	Silent	SNP	C	C	T			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr10:31791358C>T	ENST00000446923.2	+	4	745	c.354C>T	c.(352-354)gaC>gaT	p.D118D	ZEB1_ENST00000559858.1_3'UTR|ZEB1_ENST00000361642.5_Silent_p.D135D|ZEB1_ENST00000542815.3_Silent_p.D67D|ZEB1_ENST00000320985.10_Silent_p.D134D|ZEB1_ENST00000560721.2_Silent_p.D114D	NM_001128128.2|NM_001174094.1	NP_001121600.1|NP_001167565.1	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1	134					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			NS(2)|breast(4)|central_nervous_system(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(14)|lung(38)|ovary(3)|skin(6)|upper_aerodigestive_tract(4)	77		Prostate(175;0.0156)				AACAACAAGACACTGCTGTCA	0.408000													6	40					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40792724	40792724	+	Missense_Mutation	SNP	T	T	C			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr4:40792724T>C	ENST00000381782.2	+	8	1637	c.1142T>C	c.(1141-1143)gTt>gCt	p.V381A	NSUN7_ENST00000316607.5_Missense_Mutation_p.V381A	NM_024677.4	NP_078953.3			NOP2/Sun domain family, member 7											NS(1)|autonomic_ganglia(1)|cervix(1)|large_intestine(1)|lung(2)|skin(1)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	12						GGACTGGGTGTTAGTAATCCA	0.269000													3	70					0	0	1	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529	by1000genomes	TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr17:39254054A>T	ENST00000333822.4	-	1	339	c.283T>A	c.(283-285)Tgc>Agc	p.C95S		NM_031960.2	NP_114166.1	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4-8	95	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].					keratin filament		p.C95S(4)		endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|lung(1)|prostate(1)	11						ctggagatgcagcagcTAGGG	0.677000													3	23					0	0	1	0	0
FLRT2	23768	broad.mit.edu	37	14	86089608	86089608	+	Missense_Mutation	SNP	C	C	T			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr14:86089608C>T	ENST00000330753.4	+	2	2517	c.1750C>T	c.(1750-1752)Cgg>Tgg	p.R584W	FLRT2_ENST00000554746.1_Missense_Mutation_p.R584W	NM_013231.4	NP_037363.1	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	584					cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			NS(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|kidney(7)|large_intestine(21)|lung(27)|ovary(3)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	73				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CCGGGGCCGGCGGAAAGATGA	0.493000													9	74					0	0	1	0	0
RP11-473J6.1	0	broad.mit.edu	37	8	35764050	35764050	+	RNA	DEL	T	T	-			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr8:35764050delT	ENST00000523748.1	+	0	366																											actgctcgcctttatctttgt	0.532													2	4	---	---	---	---					
MAP3K9	4293	broad.mit.edu	37	14	71275774	71275776	+	In_Frame_Del	DEL	CCT	CCT	-	rs3832971		TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr14:71275774_71275776delCCT	ENST00000554752.2	-	1	112_114	c.113_115delAGG	c.(112-117)gcg>g	p.EA38del	MAP3K9_ENST00000555993.2_In_Frame_Del_p.EA38del|MAP3K9_ENST00000381250.4_In_Frame_Del_p.EA38del			P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase 9	38	Ala-rich.|Poly-Glu.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity	p.E38delE(1)		breast(1)|central_nervous_system(3)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(5)|lung(25)|ovary(2)|prostate(1)|skin(3)|stomach(2)	46				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GCCGCCGCCGcctcctcctcctc	0.773													3	4	---	---	---	---					
MARK4	57787	broad.mit.edu	37	19	45790742	45790742	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr19:45790742delC	ENST00000300843.4	+	13	1611	c.1314delC	c.(1312-1314)agfs	p.S438fs	MARK4_ENST00000262891.4_Frame_Shift_Del_p.S438fs	NM_031417.3	NP_113605.2	Q96L34	MARK4_HUMAN	MAP/microtubule affinity-regulating kinase 4	438					microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			NS(1)|biliary_tract(1)|central_nervous_system(4)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(6)|lung(7)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)	31		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCAAACGCAGCCCGACGAGCA	0.701													2	4	---	---	---	---					
HELZ2	85441	broad.mit.edu	37	20	62193251	62193251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SR-A6MU-01A-11D-A35I-08	TCGA-SR-A6MU-10B-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d3a73077-d1b2-4000-9184-0b300022c629	eca93414-506d-4dcc-948b-670ab178a569	g.chr20:62193251delG	ENST00000467148.1	-	11	6685	c.6616delC	c.(6616-6618)gtfs	p.R2206fs	HELZ2_ENST00000427522.2_Frame_Shift_Del_p.R1637fs	NM_001037335.2	NP_001032412.2			helicase with zinc finger 2, transcriptional coactivator																		TTCTCCCCACGGGGGGGGCCT	0.647													3	6	---	---	---	---					
