Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RP11-24M17.5	0	broad.mit.edu	37	15	76074441	76074441	+	RNA	SNP	A	A	T			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr15:76074441A>T	ENST00000395215.3	+	0	620																											CGAGCTGCAGAGAAGCGGTCC	0.557000													3	38					0	0	1	0	0
GSTA1	2938	broad.mit.edu	37	6	52658986	52658986	+	Silent	SNP	T	T	C			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr6:52658986T>C	ENST00000334575.5	-	5	506	c.351A>G	c.(349-351)aaA>aaG	p.K117K	GSTA1_ENST00000493331.1_5'UTR	NM_145740.3	NP_665683.1	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	117	GST C-terminal.		K -> Q (in dbSNP:rs1051757).		glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			large_intestine(2)|lung(8)|ovary(1)|upper_aerodigestive_tract(1)	12	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	GCTTGGCATCTTTTTCCTCAG	0.398000													4	194					0	0	1	0	0
RP11-24M17.5	0	broad.mit.edu	37	15	76074431	76074431	+	RNA	SNP	C	C	T	rs149323153	by1000genomes	TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr15:76074431C>T	ENST00000395215.3	+	0	610																		p.S190L(2)									CTCCAGTCCTCGAGCTGCAGA	0.547000													3	34					0	0	1	0	0
LINC00969	0	broad.mit.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs12107841	by1000genomes	TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr3:195400728A>G	ENST00000445430.1	+	0	1324																											GATTGTGCCCAGCCTGTACGC	0.587000													4	23					0	0	1	0	0
ARSI	340075	broad.mit.edu	37	5	149677492	149677492	+	Missense_Mutation	SNP	G	G	T			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr5:149677492G>T	ENST00000328668.7	-	2	1574	c.995C>A	c.(994-996)cCc>cAc	p.P332H		NM_001012301.2	NP_001012301.1	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I	332						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(11)|ovary(1)|pancreas(1)|skin(1)|urinary_tract(1)	23			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTTGAGCAGGGGACTGTGGAC	0.637000													7	31					3.09899e-07	3.09899e-07	1	1	0
SF3A3	10946	broad.mit.edu	37	1	38455621	38455621	+	Missense_Mutation	SNP	T	T	C			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr1:38455621T>C	ENST00000373019.4	-	1	972	c.17A>G	c.(16-18)gAg>gGg	p.E6G	SF3A3_ENST00000448721.2_Missense_Mutation_p.E6G	NM_006802.2	NP_006793.1	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3, 60kDa	6					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding			breast(1)|endometrium(1)|kidney(3)|large_intestine(1)|liver(1)|lung(3)|prostate(2)	12	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CCGCTGCTGCTCCAGTATTGT	0.592000											OREG0013386	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	63					0	0	1	0	0
ARNTL	406	broad.mit.edu	37	11	13402802	13402802	+	Splice_Site	SNP	G	G	A			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr11:13402802G>A	ENST00000389708.3	+	18	2067		c.e18+1		ARNTL_ENST00000403510.3_Splice_Site|ARNTL_ENST00000403290.1_Splice_Site|ARNTL_ENST00000401424.1_Splice_Site|ARNTL_ENST00000403482.3_Splice_Site|ARNTL_ENST00000389707.4_Splice_Site|ARNTL_ENST00000396441.3_Splice_Site|ARNTL_ENST00000361003.4_Splice_Site			O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear translocator-like						circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(1)|endometrium(2)|large_intestine(11)|lung(5)|upper_aerodigestive_tract(1)	20				Epithelial(150;0.0243)		AGGCAAGAAGGTAAGACTGAT	0.502000													3	37					0	0	1	0	0
EPAS1	2034	broad.mit.edu	37	2	46607406	46607406	+	Missense_Mutation	SNP	A	A	G			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr2:46607406A>G	ENST00000263734.3	+	12	2105	c.1595A>G	c.(1594-1596)tAt>tGt	p.Y532C		NM_001430.4	NP_001421.2	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	532	NTAD.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|liver(2)|lung(11)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	39		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			CTGGCACCCTATATCCCCATG	0.587000													75	10					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274214	39274214	+	Missense_Mutation	SNP	G	G	C			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr17:39274214G>C	ENST00000391413.2	-	1	392	c.354C>G	c.(352-354)agC>agG	p.S118R		NM_033059.3	NP_149048.2	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	118	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament				endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|lung(8)|prostate(5)|skin(1)	33		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			gtctgcagcagctggacacac	0.652000													3	28					0	0	1	0	0
COL19A1	1310	broad.mit.edu	37	6	70854156	70854156	+	Splice_Site	SNP	G	G	A			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr6:70854156G>A	ENST00000322773.4	+	24	1782		c.e24+1		COL19A1_ENST00000393344.1_Splice_Site	NM_001858.4	NP_001849.2	Q14993	COJA1_HUMAN	collagen, type XIX, alpha 1						cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			breast(4)|central_nervous_system(3)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(5)|kidney(4)|large_intestine(8)|lung(54)|ovary(3)|prostate(2)|skin(10)|upper_aerodigestive_tract(4)|urinary_tract(2)	109						AGGAGAAAAGGTATAGTTTAC	0.398000													41	60					0	0	1	0	0
EPS8	0	broad.mit.edu	37	12	15800190	15800190	+	Missense_Mutation	SNP	G	G	C			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr12:15800190G>C	ENST00000281172.5	-	15	1875	c.1439C>G	c.(1438-1440)tCc>tGc	p.S480C	EPS8_ENST00000543523.1_Missense_Mutation_p.S480C|EPS8_ENST00000540613.1_Missense_Mutation_p.S220C|EPS8_ENST00000543612.1_Missense_Mutation_p.S480C|EPS8_ENST00000542903.1_Missense_Mutation_p.S220C	NM_004447.5	NP_004438.3	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway substrate 8	480					cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			NS(1)|breast(3)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(9)|ovary(3)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	33		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		TGATACACTGGAATGCTGAAA	0.428000													15	43					0	0	1	0	0
ZNF507	22847	broad.mit.edu	37	19	32845169	32845169	+	Missense_Mutation	SNP	C	C	T			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr19:32845169C>T	ENST00000311921.3	+	2	1625	c.1433C>T	c.(1432-1434)gCc>gTc	p.A478V	ZNF507_ENST00000355898.5_Missense_Mutation_p.A478V|ZNF507_ENST00000587084.1_3'UTR|ZNF507_ENST00000544431.1_Missense_Mutation_p.A478V	NM_001136156.1|NM_014910.4	NP_001129628.1|NP_055725.2	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	478					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(2)|breast(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(10)|ovary(1)|pancreas(1)|skin(2)|urinary_tract(1)	31	Esophageal squamous(110;0.162)					GATGAGAATGCCCCACCAGGC	0.448000													3	45					0	0	1	0	0
FAM159A	348378	broad.mit.edu	37	1	53108560	53108560	+	Missense_Mutation	SNP	G	G	A			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr1:53108560G>A	ENST00000517870.1	+	2	358	c.208G>A	c.(208-210)Gta>Ata	p.V70I	FAM159A_ENST00000401050.3_3'UTR	NM_001042693.1	NP_001036158.1	Q6UWV7	F159A_HUMAN	family with sequence similarity 159, member A	70						integral to membrane				endometrium(3)|lung(6)|upper_aerodigestive_tract(1)	10						AGGCCTGTCCGTAGCAGCAGT	0.522000													4	115					0	0	1	0	0
RP11-798G7.5	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs149697015	by1000genomes	TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr17:43587569G>C	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							aactccgtctgaaaagaaaag	0.443000													3	34					0	0	1	0	0
EHBP1	23301	broad.mit.edu	37	2	63220752	63220752	+	Missense_Mutation	SNP	G	G	A			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr2:63220752G>A	ENST00000263991.5	+	19	3516	c.3034G>A	c.(3034-3036)Gtc>Atc	p.V1012I	EHBP1_ENST00000496857.1_3'UTR|EHBP1_ENST00000354487.3_Missense_Mutation_p.V977I|EHBP1_ENST00000405289.1_Missense_Mutation_p.V977I|EHBP1_ENST00000405015.3_Missense_Mutation_p.V941I|EHBP1_ENST00000431489.1_Missense_Mutation_p.V941I	NM_015252.3	NP_056067.2	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1	1012						cytoplasm|membrane				biliary_tract(1)|breast(3)|cervix(1)|endometrium(4)|kidney(4)|large_intestine(8)|lung(22)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	47	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			AGATTCTACAGTCAGAAAAAC	0.338000													8	42					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101559400	101559400	+	Silent	SNP	A	A	G			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr7:101559400A>G	ENST00000360264.3	+	2	89	c.69A>G	c.(67-69)gaA>gaG	p.E23E	CUX1_ENST00000546411.2_Silent_p.E12E|CUX1_ENST00000292538.4_Silent_p.E23E|CUX1_ENST00000560541.1_3'UTR|CUX1_ENST00000556210.1_Silent_p.E12E|CUX1_ENST00000547394.2_Silent_p.E23E|CUX1_ENST00000550008.2_Silent_p.E12E|CUX1_ENST00000292535.7_Silent_p.E12E|CUX1_ENST00000549414.2_Silent_p.E12E|CUX1_ENST00000393824.3_Intron|CUX1_ENST00000437600.4_Silent_p.E23E|CUX1_ENST00000425244.2_Silent_p.E23E	NM_001202543.1	NP_001189472.1	P39880	CUX1_HUMAN	cut-like homeobox 1	12					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)|central_nervous_system(1)|cervix(2)|endometrium(6)|kidney(3)|large_intestine(8)|lung(26)|ovary(7)|pancreas(1)|prostate(6)|skin(2)|stomach(1)|urinary_tract(5)	70						AACAGAGAGAACTCGATGCCA	0.502000													9	121					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45695987	45695995	+	In_Frame_Del	DEL	CCGCCGCCA	CCGCCGCCA	-	rs56064803	byFrequency	TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr5:45695987_45695995delCCGCCGCCA	ENST00000303230.4	-	1	258_266	c.201_209delTGGCGGCGG	c.(199-210)ggc>gg	p.GGGG71del		NM_021072.3	NP_066550.2	O60741	HCN1_HUMAN	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	71	Gly-rich.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity	p.G72_G74delGGG(1)		NS(3)|breast(4)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(21)|liver(1)|lung(98)|ovary(1)|prostate(7)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(5)	156						gccgccgccgccgccgccaccgccgccac	0.770													6	7	---	---	---	---					
CEP290	80184	broad.mit.edu	37	12	88512304	88512305	+	Frame_Shift_Ins	INS	-	-	T	rs77980773		TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr12:88512304_88512305insT	ENST00000552810.1	-	17	2009_2010	c.1666_1667insA	c.(1666-1668)tcgfs	p.S556fs	CEP290_ENST00000397838.3_5'UTR|CEP290_ENST00000309041.7_Frame_Shift_Ins_p.S558fs	NM_025114.3	NP_079390.3	O15078	CE290_HUMAN	centrosomal protein 290kDa	556					cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding	p.I558fs*20(1)		breast(4)|central_nervous_system(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(20)|liver(1)|lung(18)|ovary(5)|pancreas(1)|prostate(2)|stomach(1)|upper_aerodigestive_tract(1)	73						CATTTGACGAATTTTTTTTTTC	0.312													2	4	---	---	---	---					
SEZ6L2	26470	broad.mit.edu	37	16	29908335	29908335	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr16:29908335delC	ENST00000308713.5	-	3	846	c.319delG	c.(319-321)tcfs	p.V107fs	SEZ6L2_ENST00000537485.1_Frame_Shift_Del_p.V63fs|SEZ6L2_ENST00000562159.1_5'UTR|SEZ6L2_ENST00000350527.3_Intron|SEZ6L2_ENST00000346932.5_Frame_Shift_Del_p.V107fs	NM_001114099.2|NM_201575.3	NP_001107571.1|NP_963869.2	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2	107	Pro-rich.					endoplasmic reticulum membrane|integral to membrane|plasma membrane				breast(2)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(10)|lung(16)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	39						TTAGGGGTGACGGCTGTTGTC	0.736													2	4	---	---	---	---					
ARFGAP3	26286	broad.mit.edu	37	22	43213780	43213780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SR-A6MV-01A-11D-A35I-08	TCGA-SR-A6MV-10D-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60e6543-bc1d-4fb9-9149-548b39eb42fd	4180fbb4-7ea0-44cd-bb1e-b0899579ad93	g.chr22:43213780delT	ENST00000263245.5	-	10	1115	c.896delA	c.(895-897)atfs	p.N299fs	ARFGAP3_ENST00000429508.2_Frame_Shift_Del_p.N227fs|ARFGAP3_ENST00000437119.2_Frame_Shift_Del_p.N255fs	NM_001142293.1|NM_014570.4	NP_001135765.1|NP_055385.3	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating protein 3	299					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(3)|endometrium(1)|kidney(1)|large_intestine(3)|lung(2)|ovary(1)	11						TGAGTCAACATTTTTTTTGCC	0.363													7	130	---	---	---	---					
