Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DIDO1	11083	broad.mit.edu	37	20	61542656	61542656	+	Silent	SNP	G	G	C			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr20:61542656G>C	ENST00000266070.4	-	3	634	c.309C>G	c.(307-309)ccC>ccG	p.P103P	DIDO1_ENST00000370371.4_Silent_p.P103P|DIDO1_ENST00000395335.2_Silent_p.P103P|DIDO1_ENST00000266071.5_Silent_p.P103P|DIDO1_ENST00000395343.1_Silent_p.P103P|DIDO1_ENST00000370368.1_Silent_p.P103P|DIDO1_ENST00000354665.4_Silent_p.P103P|DIDO1_ENST00000370366.1_Silent_p.P103P|DIDO1_ENST00000395340.1_Silent_p.P103P	NM_033081.2	NP_149072.2	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1	103					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			NS(6)|breast(5)|central_nervous_system(1)|cervix(3)|endometrium(6)|kidney(1)|large_intestine(17)|lung(39)|ovary(8)|prostate(3)|skin(7)|stomach(2)|upper_aerodigestive_tract(1)	99	Breast(26;5.68e-08)					CGTCTGTGGCGGGGCAGGACG	0.662000													15	19					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133796909	133796909	+	Missense_Mutation	SNP	T	T	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr11:133796909T>A	ENST00000321016.8	-	13	1939	c.1709A>T	c.(1708-1710)gAc>gTc	p.D570V	IGSF9B_ENST00000533871.2_Missense_Mutation_p.D570V			Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	570	Fibronectin type-III 1.					integral to membrane|plasma membrane				breast(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(18)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	44	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CTCCAGGGTGTCCACCAGCAG	0.602000													8	5					0	0	1	0	0
RP11-248G5.8	0	broad.mit.edu	37	13	52865661	52865661	+	RNA	SNP	C	C	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr13:52865661C>A	ENST00000451298.1	-	0	31				RP11-64P12.8_ENST00000606031.1_RNA																							AAGGATGACACAATTGAATGA	0.289000													4	33					0.00909568	0.00938909	1	1	0
SETDB2	83852	broad.mit.edu	37	13	50055170	50055170	+	Silent	SNP	G	G	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr13:50055170G>A	ENST00000354234.4	+	8	1980	c.1074G>A	c.(1072-1074)caG>caA	p.Q358Q	SETDB2_ENST00000258672.5_Silent_p.Q358Q|SETDB2_ENST00000317257.8_Silent_p.Q370Q	NM_001160308.1	NP_001153780.1	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2	370	Pre-SET.				cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(3)|lung(2)|ovary(1)|upper_aerodigestive_tract(1)	15		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		TGAGGTTACAGGTGTTCAAAA	0.398000													12	95					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16863161	16863161	+	Missense_Mutation	SNP	C	C	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr11:16863161C>A	ENST00000355661.3	-	9	815	c.805G>T	c.(805-807)Gac>Tac	p.D269Y	PLEKHA7_ENST00000532079.1_Intron|PLEKHA7_ENST00000448080.2_Missense_Mutation_p.D269Y|PLEKHA7_ENST00000531066.1_Missense_Mutation_p.D269Y			Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A member 7	269	PH.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(3)|large_intestine(7)|lung(13)|ovary(1)|prostate(2)|skin(7)|urinary_tract(1)	37						GCGTTCATGTCCTCCTGGGTG	0.592000													6	28					0.0293803	0.0293803	1	1	0
PMM1	5372	broad.mit.edu	37	22	41980005	41980005	+	Missense_Mutation	SNP	G	G	C			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr22:41980005G>C	ENST00000216259.7	-	5	516	c.432C>G	c.(430-432)agC>agG	p.S144R	PMM1_ENST00000466645.1_5'UTR	NM_002676.2	NP_002667.2	Q92871	PMM1_HUMAN	phosphomannomutase 1	144					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol	metal ion binding|phosphomannomutase activity			NS(1)|large_intestine(4)|lung(3)|ovary(1)|urinary_tract(2)	11						CCAGGGTGCAGCTCCGGCCGA	0.567000													9	59					0	0	1	0	0
XPO7	23039	broad.mit.edu	37	8	21827087	21827087	+	Splice_Site	SNP	C	C	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr8:21827087C>A	ENST00000434536.1	+	3	361	c.259_splice	c.e3+1	p.R87_splice	XPO7_ENST00000433566.4_Splice_Site_p.R88_splice|XPO7_ENST00000518017.1_3'UTR|XPO7_ENST00000252512.9_Splice_Site_p.R87_splice			Q9UIA9	XPO7_HUMAN	exportin 7	87	Importin N-terminal.				mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(4)|kidney(4)|large_intestine(2)|lung(12)|ovary(2)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	36				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		AATAGATATTCGTAAGTGGAG	0.398000													3	9					6.4e-05	7.31429e-05	1	1	0
TEX11	0	broad.mit.edu	37	X	69825319	69825319	+	Missense_Mutation	SNP	T	T	C			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chrX:69825319T>C	ENST00000395889.2	-	25	2199	c.2044A>G	c.(2044-2046)Aca>Gca	p.T682A	TEX11_ENST00000344304.3_Missense_Mutation_p.T682A|TEX11_ENST00000374333.2_Missense_Mutation_p.T667A|TEX11_ENST00000374320.2_Missense_Mutation_p.T357A	NM_001003811.1	NP_001003811.1	Q8IYF3	TEX11_HUMAN	testis expressed 11	682							protein binding			breast(4)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(12)|lung(13)|ovary(3)|prostate(3)|skin(3)	48	Renal(35;0.156)					AGTAAACATGTTTTCCGTGCA	0.393000													10	21					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54848254	54848254	+	Silent	SNP	G	G	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr19:54848254G>A	ENST00000291759.4	-	6	1169	c.1113C>T	c.(1111-1113)taC>taT	p.Y371Y	AC008984.2_ENST00000507363.1_RNA	NM_012276.3	NP_036408.3	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4	371	Ig-like C2-type 4.					integral to membrane	receptor activity			NS(2)|breast(1)|central_nervous_system(2)|endometrium(2)|large_intestine(5)|lung(13)|prostate(3)|skin(1)|upper_aerodigestive_tract(3)	32	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		TATGAGCTCCGTACATTGATC	0.587000													9	85					0	0	1	0	0
GFI1B	8328	broad.mit.edu	37	9	135866270	135866270	+	Missense_Mutation	SNP	C	C	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr9:135866270C>A	ENST00000339463.3	+	11	1645	c.826C>A	c.(826-828)Cac>Aac	p.H276N	GFI1B_ENST00000534944.1_Missense_Mutation_p.H230N|GFI1B_ENST00000372124.1_Missense_Mutation_p.H230N|GFI1B_ENST00000450530.1_Missense_Mutation_p.H276N|GFI1B_ENST00000372123.1_Missense_Mutation_p.H230N|GFI1B_ENST00000372122.1_Missense_Mutation_p.H276N			Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription repressor	276	Interaction with ARIH2.|Mediates interaction with GATA1.				cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(2)|endometrium(1)|kidney(1)|large_intestine(5)|lung(10)|ovary(1)|prostate(1)	21				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		TGAGAAGCCGCACAAGTGCCA	0.652000													7	27					0.000157383	0.000173664	1	1	0
LL22NC03-80A10.6	0	broad.mit.edu	37	22	22661478	22661478	+	RNA	SNP	T	T	G			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr22:22661478T>G	ENST00000426066.1	+	0	368					NR_027293.1																						CAGATGCGTCTGAAGAAACAT	0.488000													5	49					0	0	1	0	0
NEURL	0	broad.mit.edu	37	10	105331472	105331472	+	Missense_Mutation	SNP	G	G	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr10:105331472G>A	ENST00000369780.4	+	3	951	c.542G>A	c.(541-543)cGc>cAc	p.R181H	NEURL_ENST00000369777.2_Missense_Mutation_p.R164H|NEURL_ENST00000465048.1_3'UTR	NM_004210.4	NP_004201.3	O76050	NEU1A_HUMAN		181	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(1)|lung(4)|ovary(2)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	17				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		GTCTTCCACCGCATCAACGAC	0.637000													4	58					0	0	1	0	0
CYP21A1P	0	broad.mit.edu	37	6	31975463	31975463	+	RNA	SNP	T	T	C			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr6:31975463T>C	ENST00000342991.6	+	0	1386					NR_040090.1		Q5ST44	Q5ST44_HUMAN									electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen										GCAGCGACTGTAGGAGGAGCT	0.657000													3	7					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71570317	71570317	+	Missense_Mutation	SNP	T	T	G			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr14:71570317T>G	ENST00000304743.2	+	32	6472	c.6026T>G	c.(6025-6027)cTt>cGt	p.L2009R	PCNX_ENST00000439984.3_Missense_Mutation_p.L1898R|PCNX_ENST00000238570.5_Missense_Mutation_p.L1937R|PCNX_ENST00000556272.1_3'UTR	NM_014982.2	NP_055797.2	Q96RV3	PCX1_HUMAN	pecanex homolog (Drosophila)	2009						integral to membrane				NS(2)|biliary_tract(1)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(14)|liver(2)|lung(40)|ovary(1)|prostate(7)|skin(2)|urinary_tract(1)	87			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		CACGAACAGCTTAAAGACATT	0.453000													4	56					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152280504	152280504	+	Silent	SNP	G	G	A	rs141571186		TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr1:152280504G>A	ENST00000368799.1	-	3	6893	c.6858C>T	c.(6856-6858)caC>caT	p.H2286H	FLG-AS1_ENST00000593011.1_RNA|FLG-AS1_ENST00000420707.1_RNA	NM_002016.1	NP_002007.1	P20930	FILA_HUMAN	filaggrin	2286	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			autonomic_ganglia(1)|breast(13)|central_nervous_system(5)|cervix(2)|endometrium(38)|haematopoietic_and_lymphoid_tissue(1)|kidney(16)|large_intestine(57)|lung(211)|ovary(13)|pancreas(1)|prostate(15)|skin(24)|stomach(5)|upper_aerodigestive_tract(10)|urinary_tract(12)	424	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCTGTCTTCGTGATGGGACC	0.557000									Ichthyosis				7	322					0	0	1	0	0
STAC3	246329	broad.mit.edu	37	12	57642948	57642948	+	Silent	SNP	T	T	C			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr12:57642948T>C	ENST00000332782.2	-	3	411	c.210A>G	c.(208-210)gaA>gaG	p.E70E	STAC3_ENST00000554578.1_Silent_p.E31E|STAC3_ENST00000546246.2_Intron	NM_145064.1	NP_659501.1	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	70	Poly-Glu.				intracellular signal transduction		identical protein binding|metal ion binding			breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(10)|ovary(2)|skin(1)	18						cctcctcttcttcctcttcct	0.542000													3	40					0	0	1	0	0
PMM1	5372	broad.mit.edu	37	22	41980004	41980004	+	Missense_Mutation	SNP	A	A	T			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr22:41980004A>T	ENST00000216259.7	-	5	517	c.433T>A	c.(433-435)Tgc>Agc	p.C145S	PMM1_ENST00000466645.1_5'UTR	NM_002676.2	NP_002667.2	Q92871	PMM1_HUMAN	phosphomannomutase 1	145					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol	metal ion binding|phosphomannomutase activity			NS(1)|large_intestine(4)|lung(3)|ovary(1)|urinary_tract(2)	11						TCCAGGGTGCAGCTCCGGCCG	0.567000													9	59					0	0	1	0	0
RPL32P3	0	broad.mit.edu	37	3	129116292	129116292	+	RNA	SNP	A	A	C			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr3:129116292A>C	ENST00000514355.1	-	0	412																				lung(1)	1						AGCAAATCCCACCCTGCCAGT	0.512000													6	28					0	0	1	0	0
ZNF8	7554	broad.mit.edu	37	19	58797161	58797161	+	Missense_Mutation	SNP	C	C	A			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr19:58797161C>A	ENST00000196548.5	+	2	276	c.145C>A	c.(145-147)Ctc>Atc	p.L49I	CTD-3138B18.4_ENST00000600029.1_3'UTR|AC010642.1_ENST00000591325.1_3'UTR	NM_021089.2	NP_066575.2	P17098	ZNF8_HUMAN	zinc finger protein 8	49	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			autonomic_ganglia(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(12)|ovary(1)|skin(1)	19		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		CCAGAGGATCCTCTACCGTGA	0.537000													4	78					0.00909568	0.00938909	1	1	0
NFATC1	4772	broad.mit.edu	37	18	77170440	77170440	+	Silent	SNP	C	C	T			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr18:77170440C>T	ENST00000253506.5	+	2	534	c.165C>T	c.(163-165)gcC>gcT	p.A55A	NFATC1_ENST00000542384.1_Silent_p.A55A|NFATC1_ENST00000591814.1_Silent_p.A55A|NFATC1_ENST00000586434.1_Silent_p.A42A|NFATC1_ENST00000318065.5_Silent_p.A42A|NFATC1_ENST00000545796.1_Intron|NFATC1_ENST00000427363.2_Silent_p.A55A|NFATC1_ENST00000592223.1_Silent_p.A42A|NFATC1_ENST00000397790.2_Intron|NFATC1_ENST00000587635.1_Silent_p.A55A|NFATC1_ENST00000329101.4_Silent_p.A42A	NM_006162.3	NP_006153.2	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	55					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			NS(2)|breast(1)|endometrium(7)|kidney(1)|large_intestine(4)|lung(17)|ovary(2)|prostate(4)|skin(1)|soft_tissue(1)	40		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		TCAGCCCCGCCCTGCCGCTCC	0.632000													5	80					0	0	1	0	0
HLA-DRB6	0	broad.mit.edu	37	6	32522379	32522380	+	RNA	INS	-	-	C	rs112115106		TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr6:32522379_32522380insC	ENST00000411500.1	-	0	740					NR_001298.1																						TGAAAATAGGATTGGGAGAGTA	0.475													5	11	---	---	---	---					
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232		TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr9:139277995_139277997delGCT	ENST00000298532.2	-	15	1992_1994	c.1624_1626delAGC	c.(1624-1626)del	p.S542del		NM_003086.2	NP_003077.2	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex, polypeptide 4, 190kDa	542					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity	p.S542delS(2)		biliary_tract(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(13)|ovary(1)|prostate(3)|skin(2)|urinary_tract(1)	33		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CGTCCTCCTCgctgctgctgctg	0.690													3	5	---	---	---	---					
UBE2Q2P1	0	broad.mit.edu	37	15	85077360	85077360	+	RNA	DEL	A	A	-			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr15:85077360delA	ENST00000339094.1	-	0	1678					NR_003661.2																						tttttaaactaaaaaaaaaaa	0.373													3	2	---	---	---	---					
NKD1	85407	broad.mit.edu	37	16	50667639	50667641	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr16:50667639_50667641delCAC	ENST00000268459.3	+	10	1584_1586	c.1360_1362delCAC	c.(1360-1362)del	p.H458del		NM_033119.4	NP_149110.1	Q969G9	NKD1_HUMAN	naked cuticle homolog 1 (Drosophila)	458	His-rich.				Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding			NS(1)|central_nervous_system(1)|endometrium(1)|kidney(3)|large_intestine(5)|lung(9)|prostate(1)|urinary_tract(2)	23		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		GAGACATGAGcaccaccaccacc	0.655													2	4	---	---	---	---					
CCDC155	147872	broad.mit.edu	37	19	49920666	49920668	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr19:49920666_49920668delCTG	ENST00000447857.3	+	20	1793_1795	c.1588_1590delCTG	c.(1588-1590)del	p.L536del		NM_144688.4	NP_653289.3	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	536	Poly-Leu.					integral to membrane	calcium ion binding			NS(1)|central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(2)|lung(10)|ovary(1)|stomach(1)	22						TGTCCTGGGCctgctgctgctgc	0.650													3	3	---	---	---	---					
ANKRD20A11P	0	broad.mit.edu	37	21	15343746	15343749	+	RNA	DEL	TCTG	TCTG	-			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chr21:15343746_15343749delTCTG	ENST00000344693.5	-	0	736					NR_027270.1																						CTCTGTGCTTTCTGATGTGCTGCT	0.407													4	2	---	---	---	---					
RP13-228J13.1	0	broad.mit.edu	37	X	154578866	154578866	+	RNA	DEL	T	T	-			TCGA-TT-A6YK-01A-11D-A35I-08	TCGA-TT-A6YK-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0811ea07-4dc7-4aff-9a19-7bd397ba2f48	591b0920-7e11-4561-aa5f-62d0a4f4d723	g.chrX:154578866delT	ENST00000412436.1	-	0	98				RP13-228J13.1_ENST00000444722.1_RNA|RP13-228J13.5_ENST00000453508.1_RNA																							TTTCTCTCTGTTTTTTTTTTT	0.418													5	10	---	---	---	---					
