Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ANKRD36C	400986	broad.mit.edu	37	2	96593000	96593000	+	Missense_Mutation	SNP	A	A	G	rs111976783		TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr2:96593000A>G	ENST00000456556.1	-	28	1985	c.1901T>C	c.(1900-1902)aTa>aCa	p.I634T						ankyrin repeat domain 36C									p.I634T(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TTCTGTGGCTATATTTGAAAC	0.338000													5	47					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	A	rs79307257	by1000genomes	TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr2:96593016C>A	ENST00000456556.1	-	28	1969	c.1885G>T	c.(1885-1887)Gat>Tat	p.D629Y						ankyrin repeat domain 36C									p.D629Y(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						GAAACAGAATCTTTCTCATCA	0.318000													5	47					0.00198382	0.00212552	1	1	0
KLHL23	151230	broad.mit.edu	37	2	170591547	170591547	+	Missense_Mutation	SNP	A	A	C			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr2:170591547A>C	ENST00000392647.2	+	2	267	c.23A>C	c.(22-24)gAt>gCt	p.D8A	KLHL23_ENST00000272797.4_Missense_Mutation_p.D8A|KLHL23_ENST00000602521.1_Intron	NM_144711.5	NP_653312.2	Q8NBE8	KLH23_HUMAN	kelch-like family member 23	8										breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(4)|skin(1)|urinary_tract(1)	16						GGACAAGAAGATTATATTTAT	0.313000													3	75					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	rs146714035	by1000genomes	TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr1:145367739A>G	ENST00000342960.5	+	83	10370	c.10335A>G	c.(10333-10335)aaA>aaG	p.K3445K	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	3445								p.K3445K(4)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.413000													4	115					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593025	96593025	+	Missense_Mutation	SNP	C	C	T	rs75189823	by1000genomes	TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr2:96593025C>T	ENST00000456556.1	-	28	1960	c.1876G>A	c.(1876-1878)Gat>Aat	p.D626N						ankyrin repeat domain 36C									p.D626N(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TCTTTCTCATCACTTGTAGCC	0.318000													5	49					0	0	1	0	0
LL22NC03-80A10.6	0	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr22:22664606A>G	ENST00000426066.1	+	0	787					NR_027293.1																						GTCTTCATGCAAACTTGGTAT	0.398000													3	16					0	0	1	0	0
ACE	1636	broad.mit.edu	37	17	61560491	61560491	+	Missense_Mutation	SNP	C	C	T			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr17:61560491C>T	ENST00000290866.4	+	9	1468	c.1444C>T	c.(1444-1446)Cgt>Tgt	p.R482C	ACE_ENST00000584529.1_Intron|ACE_ENST00000428043.1_Missense_Mutation_p.R482C|ACE_ENST00000538928.1_Intron	NM_000789.3	NP_000780.1	P12821	ACE_HUMAN	angiotensin I converting enzyme	482	Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			autonomic_ganglia(1)|breast(2)|endometrium(5)|kidney(3)|large_intestine(3)|lung(22)|ovary(6)|pancreas(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	51					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CTTTAGTGGGCGTACCCCCCC	0.552000													5	143					0	0	1	0	0
ESPNP	0	broad.mit.edu	37	1	17023376	17023376	+	RNA	SNP	C	C	T	rs613579	by1000genomes	TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr1:17023376C>T	ENST00000492551.1	-	0	1571					NR_026567.1																						CCAGTAGCTCCGAGTTGTCGC	0.617000													6	24					0	0	1	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150526285	150526285	+	Missense_Mutation	SNP	G	G	T			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr1:150526285G>T	ENST00000271643.4	+	6	1054	c.818G>T	c.(817-819)gGc>gTc	p.G273V	ADAMTSL4_ENST00000369041.5_Missense_Mutation_p.G273V|RP11-54A4.2_ENST00000442435.2_RNA|ADAMTSL4_ENST00000369038.2_Missense_Mutation_p.G273V|ADAMTSL4_ENST00000369039.5_Missense_Mutation_p.G273V	NM_019032.4	NP_061905.2	Q6UY14	ATL4_HUMAN	ADAMTS-like 4	273					apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			breast(1)|cervix(1)|endometrium(6)|large_intestine(3)|lung(13)|ovary(2)|prostate(3)|skin(3)	32	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GGAGAAGGTGGCTTCTTCCGT	0.657000													3	26					1	1	1	1	0
AC008103.5	0	broad.mit.edu	37	22	18845995	18845995	+	RNA	SNP	T	T	C			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr22:18845995T>C	ENST00000412938.1	+	0	3353																											CATCCCGTCCTGCGCAGGCCG	0.592000													4	26					0	0	1	0	0
ANKRD36BP2	0	broad.mit.edu	37	2	89100689	89100689	+	RNA	SNP	C	C	T	rs80169119		TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr2:89100689C>T	ENST00000393525.3	+	0	1163																											AGATGTGATGCTAGAGTACAA	0.358000													4	87					0	0	1	0	0
GABRB2	0	broad.mit.edu	37	5	160763709	160763709	+	Silent	SNP	C	C	T	rs138163747	byFrequency	TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr5:160763709C>T	ENST00000274547.2	-	7	826	c.609G>A	c.(607-609)acG>acA	p.T203T	GABRB2_ENST00000517547.1_Silent_p.T43T|GABRB2_ENST00000353437.6_Silent_p.T203T|GABRB2_ENST00000517901.1_Silent_p.T140T|GABRB2_ENST00000520240.1_Silent_p.T203T|GABRB2_ENST00000393959.1_Silent_p.T203T	NM_000813.2|NM_021911.2	NP_000804.1|NP_068711.1	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta 2	203					gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(6)|liver(1)|lung(9)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	26	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GTTCAATTTTCGTTACTCCTG	0.378000													3	59					0	0	1	0	0
RP11-739N20.2	0	broad.mit.edu	37	1	204363980	204363980	+	RNA	DEL	A	A	-			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr1:204363980delA	ENST00000443515.1	+	0	146																											tttgtttttcaaaaaaaaaaa	0.308													4	2	---	---	---	---					
KCNV2	169522	broad.mit.edu	37	9	2718201	2718201	+	Frame_Shift_Del	DEL	C	C	-			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr9:2718201delC	ENST00000382082.3	+	1	700	c.462delC	c.(460-462)gafs	p.D154fs		NM_133497.3	NP_598004.1	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	154						voltage-gated potassium channel complex	voltage-gated potassium channel activity			NS(1)|breast(1)|central_nervous_system(3)|endometrium(5)|kidney(4)|large_intestine(7)|lung(9)|ovary(1)|prostate(2)|skin(2)	35				GBM - Glioblastoma multiforme(50;0.0257)		TCGACCGCGACCCGGCCGTCT	0.652													2	4	---	---	---	---					
RTN4RL2	349667	broad.mit.edu	37	11	57243790	57243790	+	Frame_Shift_Del	DEL	C	C	-			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr11:57243790delC	ENST00000335099.3	+	3	986	c.669delC	c.(667-669)ttfs	p.F223fs		NM_178570.1	NP_848665.1	Q86UN3	R4RL2_HUMAN	reticulon 4 receptor-like 2	223					axon regeneration	anchored to plasma membrane	receptor activity			NS(1)|endometrium(1)|large_intestine(2)|lung(2)	6						GCGCGGCCTTCCGCGGCCTCA	0.716													2	4	---	---	---	---					
PPP1R16B	26051	broad.mit.edu	37	20	37464689	37464689	+	Frame_Shift_Del	DEL	G	G	-			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chr20:37464689delG	ENST00000299824.1	+	2	310	c.121delG	c.(121-123)agfs	p.E41fs	PPP1R16B_ENST00000373331.2_Frame_Shift_Del_p.E41fs	NM_015568.2	NP_056383.1	Q96T49	PP16B_HUMAN	protein phosphatase 1, regulatory subunit 16B	41					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			biliary_tract(1)|endometrium(4)|kidney(3)|large_intestine(10)|lung(23)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)	49		Myeloproliferative disorder(115;0.00878)				GGCACAGTACGAGCAGGACTT	0.672													2	4	---	---	---	---					
MECP2	4204	broad.mit.edu	37	X	153363122	153363122	+	Translation_Start_Site	DEL	T	T	-			TCGA-TT-A6YO-01A-11D-A35I-08	TCGA-TT-A6YO-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3d78ff96-7fc0-4605-9721-5b0d9f1cb94d	5ebd3ab8-698e-4360-a13c-48761a724828	g.chrX:153363122delT	ENST00000303391.6	-	0	90				MECP2_ENST00000407218.1_De_novo_Start_OutOfFrame|MECP2_ENST00000453960.2_Start_Codon_Del	NM_004992.3	NP_004983.1	P51608	MECP2_HUMAN	methyl CpG binding protein 2 (Rett syndrome)						negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	heterochromatin|nucleus	double-stranded methylated DNA binding|protein domain specific binding|protein N-terminus binding|transcription corepressor activity			breast(2)|cervix(2)|endometrium(2)|kidney(3)|large_intestine(3)|lung(8)|prostate(2)|urinary_tract(1)	23	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					gcggcggcCATTTTCCGGACG	0.766													2	4	---	---	---	---					
